build.log

build.log (text/plain), 69.42 KB, created by Agostino Sarubbo on 2022-09-26 09:21:38 UTC

 * Package:    sci-biology/STAR-2.7.10a:0
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_musl kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox test userpriv usersandbox


@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@
This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix;
This ebuild was merged at the following commit:
https://github.com/gentoo-mirror/gentoo/commit/de9c67a261a11b7de9990ba4120c5018efef7e87  (Sat Sep 24 15:46:48 UTC 2022)
@@@@@ END @@@@@



##################
# emerge --info: #
##################
Portage 3.0.37 (python 3.10.7-final-0, default/linux/amd64/17.0/musl/hardened, gcc-12.2.0, musl-1.2.3-r4, 5.10.133-gentoo x86_64)
=================================================================
System uname: Linux-5.10.133-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5-2650_v4_@_2.20GHz-with-libc
KiB Mem:   264024340 total,  60944832 free
KiB Swap:          0 total,         0 free
Timestamp of repository gentoo: Sat, 24 Sep 2022 15:46:48 +0000
sh bash 5.1_p16-r2
ld GNU ld (Gentoo 2.39 p4) 2.39.0
app-misc/pax-utils:        1.3.5::gentoo
app-shells/bash:           5.1_p16-r2::gentoo
dev-lang/perl:             5.36.0::gentoo
dev-lang/python:           3.8.14::gentoo, 3.9.14::gentoo, 3.10.7::gentoo, 3.11.0_rc2::gentoo
dev-util/cmake:            3.24.2::gentoo
dev-util/meson:            0.63.2-r1::gentoo
sys-apps/baselayout:       2.9::gentoo
sys-apps/openrc:           0.45.2::gentoo
sys-apps/sandbox:          2.29::gentoo
sys-devel/autoconf:        2.71-r4::gentoo
sys-devel/automake:        1.16.5::gentoo
sys-devel/binutils:        2.39-r2::gentoo
sys-devel/binutils-config: 5.4.1::gentoo
sys-devel/gcc:             12.2.0::gentoo
sys-devel/gcc-config:      2.6::gentoo
sys-devel/libtool:         2.4.7::gentoo
sys-devel/make:            4.3::gentoo
sys-kernel/linux-headers:  5.19::gentoo (virtual/os-headers)
sys-libs/musl:             1.2.3-r4::gentoo
Repositories:

gentoo
    location: /usr/portage
    sync-type: rsync
    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
    priority: -1000
    sync-rsync-verify-max-age: 24
    sync-rsync-verify-jobs: 1
    sync-rsync-extra-opts: 
    sync-rsync-verify-metamanifest: yes

ACCEPT_KEYWORDS="amd64 ~amd64"
ACCEPT_LICENSE="* GPL-3"
CBUILD="x86_64-gentoo-linux-musl"
CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0"
CHOST="x86_64-gentoo-linux-musl"
CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0"
DISTDIR="/var/tmp/portage/sci-biology/STAR-2.7.10a/distdir"
EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b"
ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0"
FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0"
GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org"
INSTALL_MASK="charset.alias /usr/share/locale/locale.alias"
LANG="C.UTF8"
LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0"
MAKEOPTS="-j4"
PKGDIR="/root/tbci/binpkg"
PORTAGE_CONFIGROOT="/"
PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
PORTAGE_TMPDIR="/var/tmp"
SHELL="/bin/bash"
USE="acl amd64 bzip2 cli crypt dri elogind fortran hardened iconv ipv6 jumbo-build libglvnd libtirpc native-symlinks ncurses nls nptl openmp pam pcre pie readline seccomp split-usr ssl ssp test unicode xattr xtpax zlib" ABI_X86="64" ELIBC="musl" KERNEL="linux" USERLAND="GNU"
Unset:  ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS





##############################
# emerge history (qlop -mv): #
##############################
2022-09-24T16:32:05 >>> sci-libs/htslib-1.15.1




#######################################
# installed packages (qlist -ICvUSS): #
#######################################
acct-group/audio-0-r1:0
acct-group/cdrom-0-r1:0
acct-group/dialout-0-r1:0
acct-group/disk-0-r1:0
acct-group/input-0-r1:0
acct-group/kmem-0-r1:0
acct-group/kvm-0-r1:0
acct-group/lp-0-r1:0
acct-group/man-0-r1:0
acct-group/messagebus-0-r1:0
acct-group/portage-0:0
acct-group/render-0-r1:0
acct-group/sgx-0:0
acct-group/sshd-0-r1:0
acct-group/tape-0-r1:0
acct-group/tty-0-r1:0
acct-group/video-0-r1:0
acct-user/man-1-r1:0
acct-user/messagebus-0-r1:0
acct-user/portage-0:0
acct-user/sshd-0-r1:0
app-admin/eselect-1.4.20:0 -doc -emacs -vim-syntax
app-admin/perl-cleaner-2.30:0
app-arch/bzip2-1.0.8-r3:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs -verify-sig
app-arch/gzip-1.12-r2:0 -pic -static -verify-sig
app-arch/libarchive-3.6.1:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -verify-sig xattr -zstd
app-arch/tar-1.34:0 acl -minimal nls -selinux -verify-sig xattr
app-arch/unzip-6.0_p27:0 bzip2 -natspec unicode
app-arch/xz-utils-5.2.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 extra-filters nls split-usr -static-libs -verify-sig
app-arch/zstd-1.5.2-r2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 split-usr -static-libs threads
app-crypt/gnupg-2.3.7-r1:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -tpm -usb -user-socket -verify-sig -wks-server
app-crypt/gpgme-1.18.0-r1:1/11.6.15.1 -common-lisp cxx -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -qt5 -static-libs -test -verify-sig
app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs
app-crypt/libmd-1.0.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
app-crypt/pinentry-1.2.1:0 -caps -efl -emacs -gnome-keyring -gtk ncurses -qt5 -verify-sig
app-crypt/rhash-1.4.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls ssl -static-libs
app-editors/nano-6.4:0 -debug -justify -magic -minimal ncurses nls spell split-usr -static unicode
app-eselect/eselect-fontconfig-20220403:0
app-eselect/eselect-iptables-20220320:0
app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0
app-eselect/eselect-pinentry-0.7.2:0
app-misc/c_rehash-1.7-r1:0
app-misc/ca-certificates-20211016.3.83:0 -cacert
app-misc/editor-wrapper-4-r1:0
app-misc/mime-types-2.1.53:0 -nginx
app-misc/pax-utils-1.3.5:0 -caps man -python python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_8 -python_single_target_python3_9 seccomp -test
app-misc/tmux-3.3a-r1:0 -debug -selinux -systemd -utempter -vim-syntax
app-portage/eix-0.36.5:0 -debug -doc nls -sqlite
app-portage/elt-patches-20220831:0
app-portage/gemato-17.0:0 gpg -pretty-log -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test -tools
app-portage/gentoolkit-0.6.1-r3:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
app-portage/portage-utils-0.94.3:0 openmp qmanifest qtegrity -static
app-shells/bash-5.1_p16-r2:0 -afs -bashlogger -examples -mem-scramble net nls -plugins readline -verify-sig
app-shells/bash-completion-2.11:0 eselect -test
app-shells/gentoo-bashcomp-20190211-r1:0
app-shells/push-3.4:0
app-shells/quoter-4.2:0
app-text/ansifilter-2.18:0 -qt5
app-text/build-docbook-catalog-2.3-r1:0
app-text/docbook-xml-dtd-4.5-r2:4.5
app-text/docbook-xml-dtd-4.4-r3:4.4
app-text/docbook-xml-dtd-4.2-r3:4.2
app-text/docbook-xml-dtd-4.1.2-r7:4.1.2
app-text/docbook-xsl-stylesheets-1.79.1-r3:0 -ruby
app-text/manpager-1:0
app-text/sgml-common-0.6.3-r7:0
app-text/xmlto-0.0.28-r9:0 -latex text
dev-db/sqlite-3.39.3:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools
dev-lang/perl-5.36.0:0/5.36 -berkdb -debug -doc -gdbm ithreads -minimal -quadmath
dev-lang/python-3.11.0_rc2:3.11 -bluetooth -build ensurepip -examples gdbm hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig
dev-lang/python-3.10.7:3.10 -bluetooth -build ensurepip -examples gdbm hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig xml
dev-lang/python-3.9.14:3.9 -bluetooth -build ensurepip -examples gdbm hardened -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig xml
dev-lang/python-3.8.14:3.8 -bluetooth -build ensurepip -examples gdbm hardened -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig -wininst xml
dev-lang/python-exec-2.4.9:2 native-symlinks python_targets_pypy3 python_targets_python3_10 python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-lang/python-exec-conf-2.4.6:2 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
dev-lang/tcl-8.6.12:0/8.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug threads
dev-libs/boehm-gc-8.2.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cxx large -static-libs threads
dev-libs/elfutils-0.187-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma nls -static-libs -test utils -valgrind -verify-sig -zstd
dev-libs/expat-2.4.9:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples -static-libs unicode
dev-libs/glib-2.74.0:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dbus -debug elf -gtk-doc mime -selinux -static-libs -sysprof -systemtap -test -utils xattr
dev-libs/gmp-6.2.1-r2:0/10.4 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cxx -doc -pic -static-libs
dev-libs/gobject-introspection-1.74.0:0 -doctool -gtk-doc python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_8 -python_single_target_python3_9 -test
dev-libs/gobject-introspection-common-1.74.0:0
dev-libs/isl-0.24-r2:0/23 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
dev-libs/jsoncpp-1.9.5:0/25 -doc -test
dev-libs/libassuan-2.5.5:0
dev-libs/libatomic_ops-7.6.14:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
dev-libs/libbsd-0.11.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig
dev-libs/libevent-2.1.12:0/2.1-7 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 clock-gettime -debug -malloc-replacement ssl -static-libs -test threads -verbose-debug
dev-libs/libffi-3.4.3:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -exec-static-trampoline -experimental-loong -pax-kernel -static-libs -test
dev-libs/libgcrypt-1.10.1-r2:0/20 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx2 -cpu_flags_ppc_vsx3 cpu_flags_x86_aes cpu_flags_x86_avx cpu_flags_x86_avx2 -cpu_flags_x86_padlock -cpu_flags_x86_sha cpu_flags_x86_sse4_1 -doc -static-libs -verify-sig
dev-libs/libgpg-error-1.45-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -common-lisp nls -static-libs -test
dev-libs/libksba-1.6.1:0 -static-libs -verify-sig
dev-libs/libltdl-2.4.7:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
dev-libs/libpcre2-10.40:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -jit -libedit pcre16 pcre32 readline split-usr -static-libs unicode -verify-sig zlib
dev-libs/libpipeline-1.5.6:0 -test
dev-libs/libtasn1-4.19.0:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test -valgrind -verify-sig
dev-libs/libunistring-1.0:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs
dev-libs/libuv-1.44.2-r1:0/1
dev-libs/libxml2-2.10.2:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -examples ftp -icu -lzma python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 readline -static-libs -test
dev-libs/libxslt-1.1.37:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 crypt -debug -examples -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -static-libs
dev-libs/lzo-2.10:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples split-usr -static-libs
dev-libs/mpc-1.2.1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
dev-libs/mpfr-4.1.0_p13-r1:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
dev-libs/nettle-3.8.1:0/8-6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec cpu_flags_x86_aes cpu_flags_x86_pclmul -cpu_flags_x86_sha -doc gmp -static-libs -verify-sig
dev-libs/npth-1.6-r1:0 -test
dev-libs/openssl-1.1.1q:0/1.1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cpu_flags_x86_sse2 -rfc3779 -sctp -sslv3 -static-libs -test -tls-compression -tls-heartbeat -vanilla -verify-sig -verify-sig -weak-ssl-ciphers
dev-libs/popt-1.19:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs
dev-perl/Devel-CheckLib-1.140.0:0 -test
dev-perl/Encode-Locale-1.50.0-r1:0 -test
dev-perl/File-BaseDir-0.90.0:0 -test
dev-perl/File-DesktopEntry-0.220.0-r1:0 -test
dev-perl/File-Listing-6.150.0:0 -test -test
dev-perl/File-MimeInfo-0.300.0:0 -test
dev-perl/HTML-Parser-3.760.0:0 -test
dev-perl/HTML-Tagset-3.200.0-r2:0
dev-perl/HTTP-Cookies-6.100.0:0 -test
dev-perl/HTTP-Date-6.50.0:0
dev-perl/HTTP-Message-6.330.0:0 -test -test
dev-perl/HTTP-Negotiate-6.10.0-r2:0 -test
dev-perl/IO-HTML-1.4.0:0 -test
dev-perl/IO-Socket-INET6-2.720.0-r2:0 -test
dev-perl/IO-Socket-SSL-2.74.0:0 -examples -idn -test
dev-perl/IPC-System-Simple-1.300.0:0 -test
dev-perl/libwww-perl-6.600.0-r1:0 ssl -test
dev-perl/Locale-gettext-1.70.0-r1:0 -test
dev-perl/LWP-MediaTypes-6.40.0:0 -test
dev-perl/LWP-Protocol-https-6.100.0:0 -test
dev-perl/Module-Build-0.423.100:0 -test
dev-perl/Mozilla-CA-20999999-r1:0 -test
dev-perl/Net-HTTP-6.210.0:0 -minimal -test
dev-perl/Net-SSLeay-1.920.0:0 -examples -examples -minimal -test
dev-perl/Socket6-0.290.0:0 -test
dev-perl/Sub-Name-0.260.0:0 -suggested -test
dev-perl/TimeDate-2.330.0-r1:0 -test
dev-perl/Try-Tiny-0.310.0:0 -minimal -test
dev-perl/URI-5.110.0:0 -test
dev-perl/WWW-RobotRules-6.20.0-r2:0 -test
dev-perl/XML-Parser-2.460.0-r2:0
dev-python/appdirs-1.4.4-r2:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
dev-python/autocommand-2.2.1_p20211118:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/certifi-3021.3.16-r2:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/charset_normalizer-2.1.1:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/cython-0.29.32:0 -doc -emacs -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/ensurepip-pip-22.2.2:0
dev-python/ensurepip-setuptools-65.2.0:0
dev-python/ensurepip-wheels-100:0
dev-python/flit_core-3.7.1:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/gpep517-9:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/idna-3.4:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/importlib_metadata-4.12.0:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/importlib_resources-5.9.0:0 -python_targets_pypy3 python_targets_python3_8 -test
dev-python/inflect-6.0.0:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/installer-0.5.1-r1:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/jaraco-context-4.1.2:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/jaraco-functools-3.5.1:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/jaraco-text-3.9.1:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/jinja-3.1.2:0 -doc -examples -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/markupsafe-2.1.1:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/more-itertools-8.14.0:0 -doc -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/nspektr-0.4.0:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/ordered-set-4.1.0:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/packaging-21.3-r2:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/pydantic-1.10.2:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/pyparsing-3.0.9:0 -examples -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/pypax-0.9.5-r1:0 -ptpax python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 xtpax
dev-python/PySocks-1.7.1-r2:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
dev-python/requests-2.28.1:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -socks5 -test
dev-python/setuptools-65.3.0:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/setuptools_scm-7.0.5:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/six-1.16.0-r1:0 -doc -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/tomli-2.0.1-r1:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/typing-extensions-4.3.0:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
dev-python/urllib3-1.26.12:0 -brotli -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/wheel-0.37.1-r1:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-python/zipp-3.8.1:0 -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-util/checkbashisms-2.22.2:0
dev-util/cmake-3.24.2:0 -doc -emacs ncurses -qt5 -test -test -verify-sig
dev-util/desktop-file-utils-0.26-r2:0 -emacs
dev-util/glib-utils-2.74.0:0 python_single_target_python3_10 -python_single_target_python3_11 -python_single_target_python3_8 -python_single_target_python3_9
dev-util/gperf-3.1-r1:0
dev-util/gtk-doc-am-1.33.2:0
dev-util/intltool-0.51.0-r3:0
dev-util/meson-0.63.2-r1:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -test
dev-util/meson-format-array-0:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
dev-util/ninja-1.11.1:0 -doc -emacs -test
dev-util/pkgconf-1.8.0-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -test
dev-util/re2c-2.2:0 -debug -test
dev-vcs/git-2.37.3:0 blksha1 -cgi curl -cvs -doc -gnome-keyring gpg -highlight iconv -mediawiki -mediawiki-experimental nls pcre -perforce -perl -ppcsha1 python_single_target_python3_10 -python_single_target_python3_8 -python_single_target_python3_9 safe-directory -selinux -subversion -test -tk webdav -xinetd
media-fonts/liberation-fonts-2.1.5:0 -X -X -fontforge
media-gfx/graphite2-1.3.14_p20210810-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -perl -test
media-libs/fontconfig-2.14.0-r1:1.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs -test
media-libs/freetype-2.12.1-r1:2 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 adobe-cff -brotli bzip2 cleartype-hinting -debug -doc -fontforge harfbuzz -infinality png -static-libs -svg -utils
media-libs/harfbuzz-5.2.0:0/4.0.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 cairo -debug -doc -experimental glib graphite -icu introspection -test truetype
media-libs/libpng-1.6.38:0/16 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -apng -cpu_flags_arm_neon cpu_flags_x86_sse -static-libs
net-dns/c-ares-1.18.1:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test
net-dns/libidn2-2.3.3:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs -verify-sig
net-firewall/iptables-1.8.8-r4:0/1.8.3 -conntrack -netlink -nftables -pcap split-usr -static-libs
net-libs/gnutls-3.7.7:0/30.30 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -brotli cxx -dane -doc -examples -guile idn nls openssl -pkcs11 seccomp -sslv2 -sslv3 -static-libs -test -test-full tls-heartbeat -tools -valgrind -verify-sig zlib -zstd
net-libs/libmnl-1.0.5:0/0.2.0 -examples -verify-sig
net-libs/nghttp2-1.50.0:0/1.14 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cxx -debug -hpack-tools -jemalloc -static-libs -test -utils -xml
net-misc/curl-7.85.0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 adns -alt-svc -brotli -curl_ssl_gnutls -curl_ssl_mbedtls -curl_ssl_nss curl_ssl_openssl ftp -gnutls -gopher -hsts http2 -idn imap ipv6 -kerberos -ldap -mbedtls -nghttp3 -nss openssl pop3 progress-meter -quiche -rtmp -samba smtp -ssh ssl -sslv3 -static-libs -telnet -test tftp -verify-sig -zstd
net-misc/dhcpcd-9.4.1:0 -debug embedded ipv6 -privsep udev
net-misc/iputils-20211215:0 arping -caps -clockdiff -doc filecaps -idn nls -rarpd -rdisc -static -test -tracepath
net-misc/netifrc-0.7.3-r1:0 dhcp
net-misc/openssh-9.0_p1-r6:0 -X -X509 -abi_mips_n32 -audit -debug -hpn -kerberos -ldns -libedit -livecd pam pie -sctp -security-key -selinux ssl -static -test -verify-sig -xmss
net-misc/rsync-3.2.6:0 acl -examples iconv -lz4 python_single_target_python3_10 -python_single_target_python3_8 -python_single_target_python3_9 ssl -stunnel -system-zlib -verify-sig xattr -xxhash -zstd
net-misc/wget-1.21.3-r1:0 -cookie-check -debug -gnutls -idn ipv6 -metalink nls -ntlm pcre ssl -static -test -uuid -verify-sig zlib
perl-core/Compress-Raw-Zlib-2.202.0:0
perl-core/File-Temp-0.231.100:0
sci-libs/htslib-1.15.1:0/3 bzip2 -curl lzma
sec-keys/openpgp-keys-gentoo-release-20220101:0 -test
sys-apps/acl-2.3.1-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls split-usr -static-libs
sys-apps/attr-2.5.1-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls split-usr -static-libs
sys-apps/baselayout-2.9:0 -build split-usr
sys-apps/coreutils-9.1-r1:0 acl -caps -gmp -hostname -kill -multicall nls -selinux split-usr -static -test -vanilla -verify-sig xattr
sys-apps/dbus-1.14.0-r6:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc elogind -selinux -static-libs -systemd -test -test
sys-apps/debianutils-5.7:0 installkernel -static
sys-apps/diffutils-3.8:0 nls -static -verify-sig
sys-apps/elfix-0.9.5:0 -ptpax xtpax
sys-apps/file-5.43:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma -python python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 -seccomp -static-libs -verify-sig zlib
sys-apps/findutils-4.9.0:0 nls -selinux -static -test -verify-sig
sys-apps/gawk-5.1.1-r2:0 -mpfr nls readline -verify-sig
sys-apps/gentoo-functions-0.17:0
sys-apps/grep-3.8:0 nls pcre -static -verify-sig
sys-apps/groff-1.22.4:0 -X -examples -uchardet
sys-apps/help2man-1.49.2:0 nls
sys-apps/install-xattr-0.8:0
sys-apps/iproute2-5.19.0-r2:0 -atm -berkdb -bpf -caps -elf iptables -libbsd -minimal -nfs -selinux split-usr
sys-apps/kbd-2.5.1:0 nls pam -test
sys-apps/kmod-30:0 -debug -doc lzma -pkcs7 -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs tools zlib zstd
sys-apps/less-608:0 pcre unicode
sys-apps/man-db-2.10.2-r1:0 manpager -nls seccomp -selinux -static-libs zlib
sys-apps/miscfiles-1.5-r4:0 -minimal
sys-apps/net-tools-2.10:0 arp hostname ipv6 -nis nls -plipconfig -selinux -slattach -static
sys-apps/openrc-0.45.2:0 -audit -bash -debug ncurses netifrc -newnet pam -selinux -sysv-utils unicode
sys-apps/portage-3.0.37:0 -apidoc -build -doc -gentoo-dev ipc native-extensions -python_targets_pypy3 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9 rsync-verify -selinux -test xattr
sys-apps/sandbox-2.29:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nnp
sys-apps/sed-4.8:0 acl nls -selinux -static -verify-sig
sys-apps/shadow-4.12.3:0/4 acl -audit -bcrypt -cracklib nls pam -selinux -skey split-usr -su -verify-sig xattr
sys-apps/systemd-utils-251.4-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -boot kmod -selinux split-usr -split-usr -sysusers -test tmpfiles udev
sys-apps/sysvinit-3.05:0 -ibm -nls -selinux -static -verify-sig
sys-apps/texinfo-6.8:0 nls standalone -static
sys-apps/util-linux-2.38.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -build -caps cramfs -cryptsetup -fdformat hardlink -kill logger -magic ncurses nls pam -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 readline -rtas -selinux -slang split-usr -static-libs su suid -systemd -test -tty-helpers -udev unicode -verify-sig
sys-apps/which-2.21:0
sys-auth/elogind-246.10-r2:0 acl -audit cgroup-hybrid -debug -doc pam -policykit -selinux -test
sys-auth/pambase-20220214:0 -caps -debug elogind -gnome-keyring -homed -minimal -mktemp nullok -pam_krb5 -pam_ssh passwdqc -pwhistory -pwquality -securetty -selinux sha512 -systemd -yescrypt
sys-auth/passwdqc-2.0.2-r1:0
sys-devel/autoconf-2.71-r4:2.71 -emacs
sys-devel/autoconf-archive-2022.09.03:0
sys-devel/autoconf-wrapper-20220130:0
sys-devel/automake-1.16.5:1.16 -test
sys-devel/automake-wrapper-11-r1:0
sys-devel/binutils-2.39-r2:2.39 -cet -default-gold -doc -gold -gprofng -multitarget nls -pgo plugins -static-libs -test -vanilla
sys-devel/binutils-config-5.4.1:0 native-symlinks
sys-devel/bison-3.8.2:0 -examples nls -static -test -verify-sig
sys-devel/flex-2.6.4-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static -test
sys-devel/gcc-12.2.0:12 -ada -cet -custom-cflags cxx -d -debug -doc -fixed-point fortran -go graphite hardened -jit -libssp lto -multilib -nls nptl -objc -objc++ -objc-gc openmp -pch -pgo pie -sanitize ssp -systemtap -test -valgrind -vanilla -vtv -zstd
sys-devel/gcc-config-2.6:0 cc-wrappers native-symlinks
sys-devel/gettext-0.21-r4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -cvs cxx -doc -emacs -git -java -java ncurses -nls openmp -static-libs -verify-sig
sys-devel/gnuconfig-20220508:0
sys-devel/libtool-2.4.7:2 -vanilla
sys-devel/m4-1.4.19:0 -examples nls -verify-sig
sys-devel/make-4.3:0 -guile nls -static -verify-sig
sys-devel/patch-2.7.6-r4:0 -static -test -verify-sig xattr
sys-fs/e2fsprogs-1.46.5-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cron -fuse -lto -nls split-usr -static-libs -test threads tools
sys-fs/udev-init-scripts-35:0
sys-kernel/installkernel-gentoo-5:0 -grub
sys-kernel/linux-headers-5.19:0 -headers-only
sys-libs/argp-standalone-1.5.0:0 -static-libs
sys-libs/binutils-libs-2.39-r1:0/2.39 -64-bit-bfd -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cet -multitarget nls -static-libs
sys-libs/fts-standalone-1.2.7:0 -static-libs
sys-libs/gdbm-1.23:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 berkdb nls readline -static-libs -verify-sig
sys-libs/libcap-2.65:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 pam split-usr -static-libs -tools
sys-libs/libseccomp-2.5.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -experimental-loong -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs -test
sys-libs/libxcrypt-4.4.28-r2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 compat split-usr -static-libs system -test
sys-libs/musl-1.2.3-r4:0 -crypt -headers-only -verify-sig
sys-libs/ncurses-6.3_p20220917:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -ada cxx -debug -doc -gpm -minimal -profile split-usr -stack-realign -static-libs -test tinfo -trace -verify-sig
sys-libs/obstack-standalone-1.2.3:0 -static-libs
sys-libs/pam-1.5.2-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -berkdb -debug -filecaps -nis -selinux split-usr
sys-libs/readline-8.1_p2-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static-libs unicode -utils -verify-sig
sys-libs/zlib-1.2.12-r3:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 minizip split-usr -static-libs -verify-sig
sys-process/procps-3.3.17-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux split-usr -static-libs -systemd -test unicode
sys-process/psmisc-23.4-r1:0 -X ipv6 nls -selinux
virtual/acl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs
virtual/awk-1:0
virtual/dev-manager-0-r2:0
virtual/editor-0-r3:0
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virtual/libintl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32
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virtual/man-0-r4:0
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virtual/perl-JSON-PP-4.70.0:0
virtual/perl-libnet-3.140.0:0 ssl
virtual/perl-MIME-Base64-3.160.0-r1:0
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virtual/tmpfiles-0-r3:0
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virtual/udev-217-r5:0
virtual/w3m-1:0
virtual/yacc-0:0
www-client/pybugz-0.13-r2:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
www-client/w3m-0.5.3_p20220429-r1:0 -X -fbcon -gdk-pixbuf -gpm -imlib l10n_ja -lynxkeymap nls -nntp ssl unicode -xface
x11-apps/xprop-1.2.5:0
x11-apps/xset-1.2.4-r1:0
x11-base/xcb-proto-1.15.2:0 python_targets_python3_10 -python_targets_python3_11 python_targets_python3_8 python_targets_python3_9
x11-base/xorg-proto-2022.2:0 -test
x11-libs/cairo-1.16.0-r5:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug -gles2-only glib -opengl -static-libs svg -utils -valgrind
x11-libs/libICE-1.0.10-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 ipv6
x11-libs/libSM-1.2.3-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc ipv6 uuid
x11-libs/libX11-1.8.1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -test
x11-libs/libXau-1.0.10:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc
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x11-libs/libXdmcp-1.1.3-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc
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x11-libs/xtrans-1.4.0:0 -doc
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#######################
# build.log           #
#######################
>>> Unpacking source...
>>> Unpacking STAR-2.7.10a.tar.gz to /var/tmp/portage/sci-biology/STAR-2.7.10a/work
>>> Source unpacked in /var/tmp/portage/sci-biology/STAR-2.7.10a/work
>>> Preparing source in /var/tmp/portage/sci-biology/STAR-2.7.10a/work/STAR-2.7.10a ...
 * Applying STAR-2.7.10a-fix-build-system.patch ...
 [ ok ]
 * Applying STAR-2.7.10a-missing-include.patch ...
 [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/STAR-2.7.10a/work/STAR-2.7.10a ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/STAR-2.7.10a/work/STAR-2.7.10a ...
make -j4 -C source STAR 
make: Entering directory '/var/tmp/portage/sci-biology/STAR-2.7.10a/work/STAR-2.7.10a/source'
echo BAMbinSortByCoordinate.cpp BAMbinSortUnmapped.cpp BAMfunctions.cpp BAMoutput.cpp Chain.cpp ChimericAlign.cpp ChimericAlign_chimericBAMoutput.cpp ChimericAlign_chimericJunctionOutput.cpp ChimericAlign_chimericStitching.cpp ChimericDetection.cpp ChimericDetection_chimericDetectionMult.cpp ChimericSegment.cpp ClipCR4.cpp ClipMate_clip.cpp ClipMate_clipChunk.cpp ClipMate_initialize.cpp ErrorWarning.cpp GTF.cpp GTF_superTranscript.cpp GTF_transcriptGeneSJ.cpp Genome.cpp Genome_genomeGenerate.cpp Genome_genomeLoad.cpp Genome_genomeOutLoad.cpp Genome_insertSequences.cpp Genome_transformGenome.cpp GlobalVariables.cpp InOutStreams.cpp OutSJ.cpp PackedArray.cpp Parameters.cpp ParametersChimeric_initialize.cpp ParametersClip_initialize.cpp ParametersGenome.cpp ParametersSolo.cpp Parameters_closeReadsFiles.cpp Parameters_openReadsFiles.cpp Parameters_readFilesInit.cpp Parameters_readSAMheader.cpp Parameters_samAttributes.cpp Quantifications.cpp ReadAlign.cpp ReadAlignChunk.cpp ReadAlignChunk_mapChunk.cpp ReadAlignChunk_processChunks.cpp ReadAlign_CIGAR.cpp ReadAlign_alignBAM.cpp ReadAlign_assignAlignToWindow.cpp ReadAlign_calcCIGAR.cpp ReadAlign_chimericDetection.cpp ReadAlign_chimericDetectionOld.cpp ReadAlign_chimericDetectionOldOutput.cpp ReadAlign_chimericDetectionPEmerged.cpp ReadAlign_createExtendWindowsWithAlign.cpp ReadAlign_mapOneRead.cpp ReadAlign_mapOneReadSpliceGraph.cpp ReadAlign_mappedFilter.cpp ReadAlign_maxMappableLength2strands.cpp ReadAlign_multMapSelect.cpp ReadAlign_oneRead.cpp ReadAlign_outputAlignments.cpp ReadAlign_outputSpliceGraphSAM.cpp ReadAlign_outputTranscriptCIGARp.cpp ReadAlign_outputTranscriptSAM.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign_outputVariation.cpp ReadAlign_peOverlapMergeMap.cpp ReadAlign_quantTranscriptome.cpp ReadAlign_stitchPieces.cpp ReadAlign_stitchWindowSeeds.cpp ReadAlign_storeAligns.cpp ReadAlign_transformGenome.cpp ReadAlign_waspMap.cpp STAR.cpp SequenceFuns.cpp SharedMemory.cpp Solo.cpp SoloBarcode.cpp SoloBarcode_extractBarcode.cpp SoloFeature.cpp SoloFeature_addBAMtags.cpp SoloFeature_cellFiltering.cpp SoloFeature_collapseUMI_Graph.cpp SoloFeature_collapseUMIall_multiMappers.cpp SoloFeature_countCBgeneUMI.cpp SoloFeature_countSmartSeq.cpp SoloFeature_countVelocyto.cpp SoloFeature_emptyDrops_CR.cpp SoloFeature_loadRawMatrix.cpp SoloFeature_outputResults.cpp SoloFeature_processRecords.cpp SoloFeature_quantTranscript.cpp SoloFeature_redistributeReadsByCB.cpp SoloFeature_statsOutput.cpp SoloFeature_sumThreads.cpp SoloRead.cpp SoloReadBarcode.cpp SoloReadBarcode_getCBandUMI.cpp SoloReadFeature.cpp SoloReadFeature_inputRecords.cpp SoloReadFeature_record.cpp SoloRead_record.cpp SpliceGraph.cpp SpliceGraph_findSuperTr.cpp SpliceGraph_swScoreSpliced.cpp SpliceGraph_swTraceBack.cpp Stats.cpp SuffixArrayFuns.cpp SuperTranscriptome.cpp ThreadControl.cpp TimeFunctions.cpp Transcript.cpp Transcript_alignScore.cpp Transcript_convertGenomeCigar.cpp Transcript_generateCigarP.cpp Transcript_transformGenome.cpp Transcript_variationAdjust.cpp Transcript_variationOutput.cpp Transcriptome.cpp Transcriptome_alignExonOverlap.cpp Transcriptome_classifyAlign.cpp Transcriptome_geneCountsAddAlign.cpp Transcriptome_geneFullAlignOverlap.cpp Transcriptome_geneFullAlignOverlap_ExonOverIntron.cpp Transcriptome_quantAlign.cpp Variation.cpp bamRemoveDuplicates.cpp bamSortByCoordinate.cpp binarySearch2.cpp blocksOverlap.cpp extendAlign.cpp funCompareUintAndSuffixes.cpp funCompareUintAndSuffixesMemcmp.cpp genomeParametersWrite.cpp genomeSAindex.cpp genomeScanFastaFiles.cpp insertSeqSA.cpp mapThreadsSpawn.cpp outputSJ.cpp readLoad.cpp samHeaders.cpp serviceFuns.cpp signalFromBAM.cpp sjAlignSplit.cpp sjdbBuildIndex.cpp sjdbInsertJunctions.cpp sjdbLoadFromFiles.cpp sjdbLoadFromStream.cpp sjdbPrepare.cpp soloInputFeatureUMI.cpp stitchAlignToTranscript.cpp stitchGapIndel.cpp stitchWindowAligns.cpp streamFuns.cpp stringSubstituteAll.cpp sysRemoveDir.cpp twoPassRunPass1.cpp bam_cat.c
BAMbinSortByCoordinate.cpp BAMbinSortUnmapped.cpp BAMfunctions.cpp BAMoutput.cpp Chain.cpp ChimericAlign.cpp ChimericAlign_chimericBAMoutput.cpp ChimericAlign_chimericJunctionOutput.cpp ChimericAlign_chimericStitching.cpp ChimericDetection.cpp ChimericDetection_chimericDetectionMult.cpp ChimericSegment.cpp ClipCR4.cpp ClipMate_clip.cpp ClipMate_clipChunk.cpp ClipMate_initialize.cpp ErrorWarning.cpp GTF.cpp GTF_superTranscript.cpp GTF_transcriptGeneSJ.cpp Genome.cpp Genome_genomeGenerate.cpp Genome_genomeLoad.cpp Genome_genomeOutLoad.cpp Genome_insertSequences.cpp Genome_transformGenome.cpp GlobalVariables.cpp InOutStreams.cpp OutSJ.cpp PackedArray.cpp Parameters.cpp ParametersChimeric_initialize.cpp ParametersClip_initialize.cpp ParametersGenome.cpp ParametersSolo.cpp Parameters_closeReadsFiles.cpp Parameters_openReadsFiles.cpp Parameters_readFilesInit.cpp Parameters_readSAMheader.cpp Parameters_samAttributes.cpp Quantifications.cpp ReadAlign.cpp ReadAlignChunk.cpp ReadAlignChunk_mapChunk.cpp ReadAlignChunk_processChunks.cpp ReadAlign_CIGAR.cpp ReadAlign_alignBAM.cpp ReadAlign_assignAlignToWindow.cpp ReadAlign_calcCIGAR.cpp ReadAlign_chimericDetection.cpp ReadAlign_chimericDetectionOld.cpp ReadAlign_chimericDetectionOldOutput.cpp ReadAlign_chimericDetectionPEmerged.cpp ReadAlign_createExtendWindowsWithAlign.cpp ReadAlign_mapOneRead.cpp ReadAlign_mapOneReadSpliceGraph.cpp ReadAlign_mappedFilter.cpp ReadAlign_maxMappableLength2strands.cpp ReadAlign_multMapSelect.cpp ReadAlign_oneRead.cpp ReadAlign_outputAlignments.cpp ReadAlign_outputSpliceGraphSAM.cpp ReadAlign_outputTranscriptCIGARp.cpp ReadAlign_outputTranscriptSAM.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign_outputVariation.cpp ReadAlign_peOverlapMergeMap.cpp ReadAlign_quantTranscriptome.cpp ReadAlign_stitchPieces.cpp ReadAlign_stitchWindowSeeds.cpp ReadAlign_storeAligns.cpp ReadAlign_transformGenome.cpp ReadAlign_waspMap.cpp STAR.cpp SequenceFuns.cpp SharedMemory.cpp Solo.cpp SoloBarcode.cpp SoloBarcode_extractBarcode.cpp SoloFeature.cpp SoloFeature_addBAMtags.cpp SoloFeature_cellFiltering.cpp SoloFeature_collapseUMI_Graph.cpp SoloFeature_collapseUMIall_multiMappers.cpp SoloFeature_countCBgeneUMI.cpp SoloFeature_countSmartSeq.cpp SoloFeature_countVelocyto.cpp SoloFeature_emptyDrops_CR.cpp SoloFeature_loadRawMatrix.cpp SoloFeature_outputResults.cpp SoloFeature_processRecords.cpp SoloFeature_quantTranscript.cpp SoloFeature_redistributeReadsByCB.cpp SoloFeature_statsOutput.cpp SoloFeature_sumThreads.cpp SoloRead.cpp SoloReadBarcode.cpp SoloReadBarcode_getCBandUMI.cpp SoloReadFeature.cpp SoloReadFeature_inputRecords.cpp SoloReadFeature_record.cpp SoloRead_record.cpp SpliceGraph.cpp SpliceGraph_findSuperTr.cpp SpliceGraph_swScoreSpliced.cpp SpliceGraph_swTraceBack.cpp Stats.cpp SuffixArrayFuns.cpp SuperTranscriptome.cpp ThreadControl.cpp TimeFunctions.cpp Transcript.cpp Transcript_alignScore.cpp Transcript_convertGenomeCigar.cpp Transcript_generateCigarP.cpp Transcript_transformGenome.cpp Transcript_variationAdjust.cpp Transcript_variationOutput.cpp Transcriptome.cpp Transcriptome_alignExonOverlap.cpp Transcriptome_classifyAlign.cpp Transcriptome_geneCountsAddAlign.cpp Transcriptome_geneFullAlignOverlap.cpp Transcriptome_geneFullAlignOverlap_ExonOverIntron.cpp Transcriptome_quantAlign.cpp Variation.cpp bamRemoveDuplicates.cpp bamSortByCoordinate.cpp binarySearch2.cpp blocksOverlap.cpp extendAlign.cpp funCompareUintAndSuffixes.cpp funCompareUintAndSuffixesMemcmp.cpp genomeParametersWrite.cpp genomeSAindex.cpp genomeScanFastaFiles.cpp insertSeqSA.cpp mapThreadsSpawn.cpp outputSJ.cpp readLoad.cpp samHeaders.cpp serviceFuns.cpp signalFromBAM.cpp sjAlignSplit.cpp sjdbBuildIndex.cpp sjdbInsertJunctions.cpp sjdbLoadFromFiles.cpp sjdbLoadFromStream.cpp sjdbPrepare.cpp soloInputFeatureUMI.cpp stitchAlignToTranscript.cpp stitchGapIndel.cpp stitchWindowAligns.cpp streamFuns.cpp stringSubstituteAll.cpp sysRemoveDir.cpp twoPassRunPass1.cpp bam_cat.c
'rm' -f ./Depend.list
x86_64-gentoo-linux-musl-g++ -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -MM BAMbinSortByCoordinate.cpp BAMbinSortUnmapped.cpp BAMfunctions.cpp BAMoutput.cpp Chain.cpp ChimericAlign.cpp ChimericAlign_chimericBAMoutput.cpp ChimericAlign_chimericJunctionOutput.cpp ChimericAlign_chimericStitching.cpp ChimericDetection.cpp ChimericDetection_chimericDetectionMult.cpp ChimericSegment.cpp ClipCR4.cpp ClipMate_clip.cpp ClipMate_clipChunk.cpp ClipMate_initialize.cpp ErrorWarning.cpp GTF.cpp GTF_superTranscript.cpp GTF_transcriptGeneSJ.cpp Genome.cpp Genome_genomeGenerate.cpp Genome_genomeLoad.cpp Genome_genomeOutLoad.cpp Genome_insertSequences.cpp Genome_transformGenome.cpp GlobalVariables.cpp InOutStreams.cpp OutSJ.cpp PackedArray.cpp Parameters.cpp ParametersChimeric_initialize.cpp ParametersClip_initialize.cpp ParametersGenome.cpp ParametersSolo.cpp Parameters_closeReadsFiles.cpp Parameters_openReadsFiles.cpp Parameters_readFilesInit.cpp Parameters_readSAMheader.cpp Parameters_samAttributes.cpp Quantifications.cpp ReadAlign.cpp ReadAlignChunk.cpp ReadAlignChunk_mapChunk.cpp ReadAlignChunk_processChunks.cpp ReadAlign_CIGAR.cpp ReadAlign_alignBAM.cpp ReadAlign_assignAlignToWindow.cpp ReadAlign_calcCIGAR.cpp ReadAlign_chimericDetection.cpp ReadAlign_chimericDetectionOld.cpp ReadAlign_chimericDetectionOldOutput.cpp ReadAlign_chimericDetectionPEmerged.cpp ReadAlign_createExtendWindowsWithAlign.cpp ReadAlign_mapOneRead.cpp ReadAlign_mapOneReadSpliceGraph.cpp ReadAlign_mappedFilter.cpp ReadAlign_maxMappableLength2strands.cpp ReadAlign_multMapSelect.cpp ReadAlign_oneRead.cpp ReadAlign_outputAlignments.cpp ReadAlign_outputSpliceGraphSAM.cpp ReadAlign_outputTranscriptCIGARp.cpp ReadAlign_outputTranscriptSAM.cpp ReadAlign_outputTranscriptSJ.cpp ReadAlign_outputVariation.cpp ReadAlign_peOverlapMergeMap.cpp ReadAlign_quantTranscriptome.cpp ReadAlign_stitchPieces.cpp ReadAlign_stitchWindowSeeds.cpp ReadAlign_storeAligns.cpp ReadAlign_transformGenome.cpp ReadAlign_waspMap.cpp STAR.cpp SequenceFuns.cpp SharedMemory.cpp Solo.cpp SoloBarcode.cpp SoloBarcode_extractBarcode.cpp SoloFeature.cpp SoloFeature_addBAMtags.cpp SoloFeature_cellFiltering.cpp SoloFeature_collapseUMI_Graph.cpp SoloFeature_collapseUMIall_multiMappers.cpp SoloFeature_countCBgeneUMI.cpp SoloFeature_countSmartSeq.cpp SoloFeature_countVelocyto.cpp SoloFeature_emptyDrops_CR.cpp SoloFeature_loadRawMatrix.cpp SoloFeature_outputResults.cpp SoloFeature_processRecords.cpp SoloFeature_quantTranscript.cpp SoloFeature_redistributeReadsByCB.cpp SoloFeature_statsOutput.cpp SoloFeature_sumThreads.cpp SoloRead.cpp SoloReadBarcode.cpp SoloReadBarcode_getCBandUMI.cpp SoloReadFeature.cpp SoloReadFeature_inputRecords.cpp SoloReadFeature_record.cpp SoloRead_record.cpp SpliceGraph.cpp SpliceGraph_findSuperTr.cpp SpliceGraph_swScoreSpliced.cpp SpliceGraph_swTraceBack.cpp Stats.cpp SuffixArrayFuns.cpp SuperTranscriptome.cpp ThreadControl.cpp TimeFunctions.cpp Transcript.cpp Transcript_alignScore.cpp Transcript_convertGenomeCigar.cpp Transcript_generateCigarP.cpp Transcript_transformGenome.cpp Transcript_variationAdjust.cpp Transcript_variationOutput.cpp Transcriptome.cpp Transcriptome_alignExonOverlap.cpp Transcriptome_classifyAlign.cpp Transcriptome_geneCountsAddAlign.cpp Transcriptome_geneFullAlignOverlap.cpp Transcriptome_geneFullAlignOverlap_ExonOverIntron.cpp Transcriptome_quantAlign.cpp Variation.cpp bamRemoveDuplicates.cpp bamSortByCoordinate.cpp binarySearch2.cpp blocksOverlap.cpp extendAlign.cpp funCompareUintAndSuffixes.cpp funCompareUintAndSuffixesMemcmp.cpp genomeParametersWrite.cpp genomeSAindex.cpp genomeScanFastaFiles.cpp insertSeqSA.cpp mapThreadsSpawn.cpp outputSJ.cpp readLoad.cpp samHeaders.cpp serviceFuns.cpp signalFromBAM.cpp sjAlignSplit.cpp sjdbBuildIndex.cpp sjdbInsertJunctions.cpp sjdbLoadFromFiles.cpp sjdbLoadFromStream.cpp sjdbPrepare.cpp soloInputFeatureUMI.cpp stitchAlignToTranscript.cpp stitchGapIndel.cpp stitchWindowAligns.cpp streamFuns.cpp stringSubstituteAll.cpp sysRemoveDir.cpp twoPassRunPass1.cpp bam_cat.c parametersDefault.xxd >> Depend.list
x86_64-gentoo-linux-musl-g++: warning: parametersDefault.xxd: linker input file unused because linking not done
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature_collapseUMI_Graph.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature_collapseUMIall_multiMappers.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 ParametersClip_initialize.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 ClipMate_clip.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 ClipCR4.cpp
cd opal && \
x86_64-gentoo-linux-musl-g++ -c -I./ -std=c++11   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0  -mavx2 opal.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 ClipMate_clipChunk.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 ClipMate_initialize.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature_loadRawMatrix.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature_emptyDrops_CR.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 soloInputFeatureUMI.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature_countSmartSeq.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature_redistributeReadsByCB.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature_quantTranscript.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature_sumThreads.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature_countVelocyto.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature_countCBgeneUMI.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 Transcriptome_classifyAlign.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 Transcriptome_geneFullAlignOverlap_ExonOverIntron.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature_cellFiltering.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature_statsOutput.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 bamSortByCoordinate.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloBarcode.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 ParametersSolo.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloRead.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloRead_record.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloReadBarcode.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloReadBarcode_getCBandUMI.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloBarcode_extractBarcode.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloReadFeature.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloReadFeature_record.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloReadFeature_inputRecords.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 Solo.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature_outputResults.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature_processRecords.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SoloFeature_addBAMtags.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 ReadAlign_transformGenome.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 Genome_transformGenome.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 Transcript_convertGenomeCigar.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 twoPassRunPass1.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 samHeaders.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 Genome_genomeLoad.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 Genome_genomeOutLoad.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 Transcript_transformGenome.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 ReadAlign_outputSpliceGraphSAM.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 ReadAlign_mapOneReadSpliceGraph.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SpliceGraph.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SpliceGraph_swScoreSpliced.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SpliceGraph_swTraceBack.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SpliceGraph_findSuperTr.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 sjAlignSplit.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 GTF.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 GTF_transcriptGeneSJ.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 GTF_superTranscript.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SuperTranscriptome.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 ReadAlign_outputAlignments.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 ReadAlign.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 STAR.cpp
x86_64-gentoo-linux-musl-g++ -c   -std=c++11 -fopenmp -D'COMPILATION_TIME_PLACE=""' -D'GIT_BRANCH_COMMIT_DIFF=""' -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 SharedMemory.cpp
In file included from SharedMemory.cpp:5:
SharedMemory.h:142:27: error: expected ')' before 'key'
  142 |         SharedMemory(key_t key, bool unloadLast);
      |                     ~     ^~~~
      |                           )
SharedMemory.h:160:9: error: 'key_t' does not name a type
  160 |         key_t _key;
      |         ^~~~~
SharedMemory.h:161:9: error: 'key_t' does not name a type
  161 |         key_t _counterKey;
      |         ^~~~~
SharedMemory.cpp:21:1: error: no declaration matches 'SharedMemory::SharedMemory(key_t, bool)'
   21 | SharedMemory::SharedMemory(key_t key, bool unloadLast): _key(key), _counterKey(key+1), _unloadLast(unloadLast), _err(&cerr)
      | ^~~~~~~~~~~~
SharedMemory.h:85:7: note: candidates are: 'constexpr SharedMemory::SharedMemory(const SharedMemory&)'
   85 | class SharedMemory
      |       ^~~~~~~~~~~~
SharedMemory.h:85:7: note:                 'SharedMemory::SharedMemory()'
SharedMemory.h:85:7: note: 'class SharedMemory' defined here
SharedMemory.cpp: In member function 'std::string SharedMemory::GetPosixObjectKey()':
SharedMemory.cpp:89:19: error: '_key' was not declared in this scope; did you mean 'key'?
   89 |     key << "/" << _key;
      |                   ^~~~
      |                   key
SharedMemory.cpp: In member function 'std::string SharedMemory::CounterName()':
SharedMemory.cpp:96:45: error: '_key' was not declared in this scope
   96 |     counterName << "/shared_use_counter" << _key;
      |                                             ^~~~
SharedMemory.cpp: In member function 'void SharedMemory::CreateAndInitSharedObject(size_t)':
SharedMemory.cpp:108:19: error: '_key' was not declared in this scope
  108 |     _shmID=shmget(_key, toReserve, IPC_CREAT | IPC_EXCL | SHM_NORESERVE | 0666); //        _shmID = shmget(shmKey, shmSize, IPC_CREAT | SHM_NORESERVE | SHM_HUGETLB | 0666);
      |                   ^~~~
SharedMemory.cpp: In member function 'void SharedMemory::OpenIfExists()':
SharedMemory.cpp:140:23: error: '_key' was not declared in this scope
  140 |         _shmID=shmget(_key,0,0);
      |                       ^~~~
SharedMemory.cpp: In member function 'void SharedMemory::EnsureCounter()':
SharedMemory.cpp:246:33: error: '_counterKey' was not declared in this scope; did you mean '_counterMem'?
  246 |         _sharedCounterID=shmget(_counterKey,0,0);
      |                                 ^~~~~~~~~~~
      |                                 _counterMem
SharedMemory.cpp:253:33: error: '_counterKey' was not declared in this scope; did you mean '_counterMem'?
  253 |         _sharedCounterID=shmget(_counterKey, 1, IPC_CREAT | IPC_EXCL | SHM_NORESERVE | 0666);
      |                                 ^~~~~~~~~~~
      |                                 _counterMem
make: *** [Makefile:95: SharedMemory.o] Error 1
make: *** Waiting for unfinished jobs....
STAR.cpp: In function 'int main(int, char**)':
STAR.cpp:189:19: warning: ignoring return value of 'int bgzf_flush(BGZF*)' declared with attribute 'warn_unused_result' [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result]]
  189 |         bgzf_flush(P.inOut->outBAMfileUnsorted);
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
STAR.cpp:193:19: warning: ignoring return value of 'int bgzf_flush(BGZF*)' declared with attribute 'warn_unused_result' [-Wunused-result[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wunused-result]]
  193 |         bgzf_flush(P.inOut->outQuantBAMfile);
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
make: Leaving directory '/var/tmp/portage/sci-biology/STAR-2.7.10a/work/STAR-2.7.10a/source'
 * ERROR: sci-biology/STAR-2.7.10a::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/STAR-2.7.10a::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/STAR-2.7.10a::gentoo'`.
 * The complete build log is located at '/var/log/emerge-log/build/sci-biology/STAR-2.7.10a:20220924-163213.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/STAR-2.7.10a/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/STAR-2.7.10a/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/STAR-2.7.10a/work/STAR-2.7.10a'
 * S: '/var/tmp/portage/sci-biology/STAR-2.7.10a/work/STAR-2.7.10a'