gdal-3.5.0-r3:20220520-055725.log

gdal-3.5.0-r3:20220520-055725.log (text/plain), 15.10 KB, created by Bernd on 2022-05-20 06:18:13 UTC

 * Package:    sci-libs/gdal-3.5.0-r3
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 cpu_flags_x86_avx cpu_flags_x86_avx2 cpu_flags_x86_sse cpu_flags_x86_sse2 cpu_flags_x86_sse4_1 cpu_flags_x86_ssse3 curl elibc_glibc fits geos gif gml hdf5 heif jpeg jpeg2k kernel_linux lzma netcdf pdf png python python_single_target_python3_9 sqlite userland_GNU webp xls zstd
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
 * Using python3.9 to build
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-libs/gdal-3.5.0-r3/work/gdal-3.5.0"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/sci-libs/gdal-3.5.0-r3/work/gdal-3.5.0_build"
 * Source directory (CMAKE_USE_DIR): "/var/tmp/portage/sci-libs/gdal-3.5.0-r3/work/gdal-3.5.0"
 * Build directory  (BUILD_DIR):     "/var/tmp/portage/sci-libs/gdal-3.5.0-r3/work/gdal-3.5.0_build"
cmake -C /var/tmp/portage/sci-libs/gdal-3.5.0-r3/work/gdal-3.5.0_build/gentoo_common_config.cmake -G Ninja -DCMAKE_INSTALL_PREFIX=/usr -DENABLE_IPO=OFF -DGDAL_USE_EXTERNAL_LIBS=ON -DGDAL_USE_INTERNAL_LIBS=OFF -DCMAKE_INSTALL_INCLUDEDIR=include/gdal -DGDAL_USE_ARMADILLO=no -DGDAL_USE_ARROW=OFF -DGDAL_USE_BLOSC=OFF -DGDAL_USE_BRUNSLI=OFF -DGDAL_USE_CRNLIB=OFF -DGDAL_USE_CFITSIO=yes -DGDAL_USE_CURL=yes -DGDAL_USE_CRYPTOPP=OFF -DGDAL_USE_DEFLATE=OFF -DGDAL_USE_ECW=OFF -DGDAL_USE_EXPAT=ON -DGDAL_USE_FILEGDB=OFF -DGDAL_USE_FREEXL=yes -DGDAL_USE_FYBA=OFF -DGDAL_USE_GEOTIFF=ON -DGDAL_USE_GEOS=yes -DGDAL_USE_GIF=yes -DGDAL_USE_GTA=OFF -DGDAL_USE_HEIF=yes -DGDAL_USE_HDF4=OFF -DGDAL_USE_HDF5=yes -DGDAL_USE_HDFS=OFF -DGDAL_USE_ICONV=ON -DGDAL_USE_IDB=OFF -DGDAL_USE_JPEG=yes -DGDAL_USE_JPEG12_INTERNAL=ON -DGDAL_USE_JSONC=ON -DGDAL_USE_JXL=OFF -DGDAL_USE_KDU=OFF -DGDAL_USE_KEA=OFF -DGDAL_USE_LERC=OFF -DGDAL_USE_LIBKML=OFF -DGDAL_USE_LIBLZMA=yes -DGDAL_USE_LIBXML2=ON -DGDAL_USE_LURATECH=OFF -DGDAL_USE_LZ4=OFF -DGDAL_USE_MONGOCXX=OFF -DGDAL_USE_MRSID=OFF -DGDAL_USE_MSSQL_NCLI=OFF -DGDAL_USE_MSSQL_ODBC=OFF -DGDAL_USE_MYSQL=no -DGDAL_USE_NETCDF=yes -DGDAL_USE_ODBC=no -DGDAL_USE_ODBCCPP=OFF -DGDAL_USE_OGDI=no -DGDAL_USE_OPENCAD=OFF -DGDAL_USE_OPENCL=no -DGDAL_USE_OPENEXR=OFF -DGDAL_USE_OPENJPEG=yes -DGDAL_USE_OPENSSL=ON -DGDAL_USE_ORACLE=no -DGDAL_USE_PARQUET=OFF -DGDAL_USE_PCRE2=ON -DGDAL_USE_PDFIUM=OFF -DGDAL_USE_PNG=yes -DGDAL_USE_POPPLER=yes -DGDAL_USE_POSTGRESQL=no -DGDAL_USE_QHULL=OFF -DGDAL_USE_RASTERLITE2=OFF -DGDAL_USE_RDB=OFF -DGDAL_USE_SPATIALITE=no -DGDAL_USE_SQLITE3=yes -DGDAL_USE_SFCGAL=OFF -DGDAL_USE_TEIGHA=OFF -DGDAL_USE_TIFF=ON -DGDAL_USE_TILEDB=OFF -DGDAL_USE_WEBP=yes -DGDAL_USE_XERCESC=yes -DGDAL_USE_ZLIB=ON -DGDAL_USE_ZSTD=yes -DBUILD_PYTHON_BINDINGS=yes -DBUILD_JAVA_BINDINGS=no -Dtest_avx=yes -Dtest_avx2=yes -Dtest_sse=yes -Dtest_sse2=yes -Dtest_sse4.1=yes -Dtest_ssse3=yes -DCMAKE_BUILD_TYPE=RelWithDebInfo -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/gdal-3.5.0-r3/work/gdal-3.5.0_build/gentoo_toolchain.cmake /var/tmp/portage/sci-libs/gdal-3.5.0-r3/work/gdal-3.5.0
loading initial cache file /var/tmp/portage/sci-libs/gdal-3.5.0-r3/work/gdal-3.5.0_build/gentoo_common_config.cmake
-- The C compiler identification is GNU 11.3.0
-- The CXX compiler identification is GNU 11.3.0
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for C++ include xmmintrin.h
-- Looking for C++ include xmmintrin.h - found
-- Looking for C++ include emmintrin.h
-- Looking for C++ include emmintrin.h - found
-- Looking for C++ include tmmintrin.h
-- Looking for C++ include tmmintrin.h - found
-- Looking for C++ include smmintrin.h
-- Looking for C++ include smmintrin.h - found
-- Looking for C++ include immintrin.h
-- Looking for C++ include immintrin.h - found
-- Found Python: /var/tmp/portage/sci-libs/gdal-3.5.0-r3/temp/python3.9/bin/python3 (found suitable version "3.9.13", minimum required is "3.6") found components: Interpreter Development NumPy Development.Module Development.Embed 
-- Performing Test HAVE_WFLAG_ALL
-- Performing Test HAVE_WFLAG_ALL - Success
-- Performing Test HAVE_WFLAG_EXTRA
-- Performing Test HAVE_WFLAG_EXTRA - Success
-- Performing Test HAVE_WFLAG_INIT_SELF
-- Performing Test HAVE_WFLAG_INIT_SELF - Success
-- Performing Test HAVE_WFLAG_UNUSED_PARAMETER
-- Performing Test HAVE_WFLAG_UNUSED_PARAMETER - Success
-- Performing Test HAVE_WFLAG_MISSING_PROTOTYPES
-- Performing Test HAVE_WFLAG_MISSING_PROTOTYPES - Success
-- Performing Test HAVE_WFLAG_MISSING_DECLARATIONS
-- Performing Test HAVE_WFLAG_MISSING_DECLARATIONS - Success
-- Performing Test HAVE_WFLAG_SHORTEN_64_TO_32
-- Performing Test HAVE_WFLAG_SHORTEN_64_TO_32 - Failed
-- Performing Test HAVE_WFLAG_LOGICAL_OP
-- Performing Test HAVE_WFLAG_LOGICAL_OP - Success
-- Performing Test HAVE_WFLAG_SHADOW
-- Performing Test HAVE_WFLAG_SHADOW - Success
-- Performing Test HAVE_WFLAG_SHADOW_FIELD
-- Performing Test HAVE_WFLAG_SHADOW_FIELD - Failed
-- Performing Test HAVE_WFLAG_MISSING_INCLUDE_DIRS
-- Performing Test HAVE_WFLAG_MISSING_INCLUDE_DIRS - Success
-- Performing Test HAVE_WFLAG_FORMAT_SECURITY
-- Performing Test HAVE_WFLAG_FORMAT_SECURITY - Success
-- Performing Test HAVE_WFLAG_ERROR_VLA
-- Performing Test HAVE_WFLAG_ERROR_VLA - Success
-- Performing Test HAVE_WFLAG_NO_CLOBBERED
-- Performing Test HAVE_WFLAG_NO_CLOBBERED - Success
-- Performing Test HAVE_WFLAG_DATE_TIME
-- Performing Test HAVE_WFLAG_DATE_TIME - Success
-- Performing Test HAVE_WFLAG_NULL_DEREFERENCE
-- Performing Test HAVE_WFLAG_NULL_DEREFERENCE - Success
-- Performing Test HAVE_WFLAG_DUPLICATE_COND
-- Performing Test HAVE_WFLAG_DUPLICATE_COND - Failed
-- Performing Test HAVE_WFLAG_EXTRA_SEMI
-- Performing Test HAVE_WFLAG_EXTRA_SEMI - Success
-- Performing Test HAVE_WFLAG_COMMA
-- Performing Test HAVE_WFLAG_COMMA - Failed
-- Performing Test HAVE_WFLAG_FLOAT_CONVERSION
-- Performing Test HAVE_WFLAG_FLOAT_CONVERSION - Success
-- Performing Test HAVE_WFLAG_DOCUMENTATION_AND_NO_DEPRECATED
-- Performing Test HAVE_WFLAG_DOCUMENTATION_AND_NO_DEPRECATED - Failed
-- Performing Test HAVE_WFLAG_UNUSED_PRIVATE_FIELD
-- Performing Test HAVE_WFLAG_UNUSED_PRIVATE_FIELD - Failed
-- Performing Test HAVE_WFLAG_NON_VIRTUAL_DTOR
-- Performing Test HAVE_WFLAG_NON_VIRTUAL_DTOR - Success
-- Performing Test HAVE_WFLAG_OVERLOADED_VIRTUAL
-- Performing Test HAVE_WFLAG_OVERLOADED_VIRTUAL - Success
-- Performing Test HAVE_WFLAG_SUGGEST_OVERRIDE
-- Performing Test HAVE_WFLAG_SUGGEST_OVERRIDE - Success
-- Performing Test HAVE_FLAG_NO_OPERATOR_NAMES
-- Performing Test HAVE_FLAG_NO_OPERATOR_NAMES - Success
-- Performing Test HAVE_GCC_WARNING_ZERO_AS_NULL_POINTER_CONSTANT
-- Performing Test HAVE_GCC_WARNING_ZERO_AS_NULL_POINTER_CONSTANT - Success
-- Performing Test HAVE_WFLAG_OLD_STYLE_CAST
-- Performing Test HAVE_WFLAG_OLD_STYLE_CAST - Success
-- Performing Test HAVE_WFLAG_EFFCXX
-- Performing Test HAVE_WFLAG_EFFCXX - Success
-- Looking for vsnprintf
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-- Looking for locale.h
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-- Looking for direct.h - not found
-- Looking for dlfcn.h
-- Looking for dlfcn.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of int
-- Check size of int - done
-- Check size of unsigned long
-- Check size of unsigned long - done
-- Check size of void*
-- Check size of void* - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Performing Test HAVE_PTHREAD_MUTEX_RECURSIVE
-- Performing Test HAVE_PTHREAD_MUTEX_RECURSIVE - Success
-- Performing Test HAVE_PTHREAD_MUTEX_ADAPTIVE_NP
-- Performing Test HAVE_PTHREAD_MUTEX_ADAPTIVE_NP - Success
-- Performing Test HAVE_PTHREAD_SPINLOCK
-- Performing Test HAVE_PTHREAD_SPINLOCK - Success
-- Performing Test HAVE_5ARGS_MREMAP
-- Performing Test HAVE_5ARGS_MREMAP - Success
-- Looking for sys/stat.h
-- Looking for sys/stat.h - found
-- Looking for linux/fs.h
-- Looking for linux/fs.h - found
-- Looking for readlink
-- Looking for readlink - found
-- Looking for posix_spawnp
-- Looking for posix_spawnp - found
-- Looking for posix_memalign
-- Looking for posix_memalign - found
-- Looking for vfork
-- Looking for vfork - found
-- Looking for mmap
-- Looking for mmap - found
-- Looking for sigaction
-- Looking for sigaction - found
-- Looking for statvfs
-- Looking for statvfs - found
-- Looking for statvfs64
-- Looking for statvfs64 - found
-- Looking for lstat
-- Looking for lstat - found
-- Looking for getrlimit
-- Looking for getrlimit - found
-- Looking for RLIMIT_AS
-- Looking for RLIMIT_AS - found
-- Looking for ftell64
-- Looking for ftell64 - not found
-- Looking for ftello64
-- Looking for ftello64 - found
-- Looking for fseek64
-- Looking for fseek64 - not found
-- Looking for fseeko64
-- Looking for fseeko64 - found
-- Looking for stat64
-- Looking for stat64 - found
-- Performing Test NO_UNIX_STDIO_64
-- Performing Test NO_UNIX_STDIO_64 - Failed
-- Looking for fopen64
-- Looking for fopen64 - found
-- Looking for ftruncate64
-- Looking for ftruncate64 - found
-- Performing Test HAVE_USELOCALE
-- Performing Test HAVE_USELOCALE - Success
-- Performing Test HAVE_HIDE_INTERNAL_SYMBOLS
-- Performing Test HAVE_HIDE_INTERNAL_SYMBOLS - Success
-- Performing Test HAVE_GCC_ATOMIC_BUILTINS
-- Performing Test HAVE_GCC_ATOMIC_BUILTINS - Success
-- Performing Test HAVE_GCC_BSWAP
-- Performing Test HAVE_GCC_BSWAP - Success
-- Performing Test HAVE_SC_PHYS_PAGES
-- Performing Test HAVE_SC_PHYS_PAGES - Success
-- Performing Test INT128_TEST
-- Performing Test INT128_TEST - Success
-- checking if sprintf can be overloaded for GDAL compilation
-- Performing Test DEPRECATE_SPRINTF
-- Performing Test DEPRECATE_SPRINTF - Failed
-- Looking for linux/userfaultfd.h
-- Looking for linux/userfaultfd.h - found
-- GDAL_VERSION          = 3.5.0
-- GDAL_ABI_FULL_VERSION = 31.0.0
-- GDAL_SOVERSION        = 31
-- Found ODBC: /usr/lib64/libodbc.so  found components: ODBCINST 
-- Could NOT find ODBCCPP (missing: ODBCCPP_LIBRARY ODBCCPP_INCLUDE_DIR) 
-- Could NOT find MSSQL_ODBC (missing: MSSQL_ODBC_LIBRARY MSSQL_ODBC_INCLUDE_DIR MSSQL_ODBC_VERSION) 
-- Could NOT find MySQL (missing: MYSQL_LIBRARY MYSQL_INCLUDE_DIR) 
-- Found CURL: /usr/lib64/libcurl.so (found version "7.83.1")  
-- Performing Test Iconv_IS_BUILT_IN
-- Performing Test Iconv_IS_BUILT_IN - Success
-- Found Iconv: /usr/lib64/libc.so  
-- Performing Test _ICONV_SECOND_ARGUMENT_IS_NOT_CONST
-- Performing Test _ICONV_SECOND_ARGUMENT_IS_NOT_CONST - Success
-- Found LibXml2: /usr/lib64/libxml2.so (found version "2.9.14") 
-- Found XercesC: /usr/lib64/libxerces-c.so (found version "3.2.3") 
-- Found ZLIB: /usr/lib64/libz.so (found version "1.2.12") 
-- Could NOT find Deflate (missing: Deflate_LIBRARY Deflate_INCLUDE_DIR) 
-- Found OpenSSL: /usr/lib64/libcrypto.so (found version "1.1.1o") found components: SSL Crypto 
-- Performing Test CRYPTOPP_TEST_KNOWNBUG
-- Performing Test CRYPTOPP_TEST_KNOWNBUG - Success
-- Found CryptoPP: /usr/lib64/libcryptopp.so  
-- Found TIFF: /usr/lib64/libtiff.so (found suitable version "4.3.0", minimum required is "4.0")  
-- Could NOT find ZSTD (missing: ZSTD_DIR)
-- Found PkgConfig: /usr/bin/x86_64-pc-linux-gnu-pkg-config (found version "1.8.0") 
-- Found ZSTD: /usr/lib64/libzstd.so (found version "1.5.2")  
-- Could NOT find SFCGAL (missing: SFCGAL_LIBRARY SFCGAL_INCLUDE_DIR) 
-- Reading /usr/share/cmake/GeoTIFF/geotiff-config.cmake
-- GeoTIFF configuration, version 1.7.1
--   include directory: ${GeoTIFF_INCLUDE_DIRS}
--   ${GeoTIFF_LIBRARIES} set to shared library
-- Found PNG: /usr/lib64/libpng.so (found version "1.6.37+apng") 
-- Found JPEG: /usr/lib64/libjpeg.so (found version "62") 
-- Found GIF: /usr/lib64/libgif.so (found version "5.2.1") 
-- Could NOT find OpenCAD (missing: OPENCAD_LIBRARY OPENCAD_INCLUDE_DIR) 
-- Found QHULL: /usr/lib64/libqhull_r.so  
-- Could NOT find LERC (missing: LERC_LIBRARY LERC_INCLUDE_DIR) 
-- Could NOT find BRUNSLI (missing: BRUNSLI_ENC_LIB BRUNSLI_DEC_LIB BRUNSLI_INCLUDE_DIR) 
-- Could NOT find Shapelib (missing: Shapelib_INCLUDE_DIR Shapelib_LIBRARY) 
-- Found PCRE2: /usr/lib64/libpcre2-8.so  
-- Looking for sqlite3_column_table_name
-- Looking for sqlite3_column_table_name - found
-- Looking for sqlite3_rtree_query_callback
-- Looking for sqlite3_rtree_query_callback - found
-- Performing Test SQLite3_HAS_NON_DEPRECATED_AUTO_EXTENSION
-- Performing Test SQLite3_HAS_NON_DEPRECATED_AUTO_EXTENSION - Success
-- Found SQLite3: /usr/lib64/libsqlite3.so (found version "3.38.5") 
-- Could NOT find SPATIALITE (missing: SPATIALITE_LIBRARY SPATIALITE_INCLUDE_DIR) 
-- Could NOT find RASTERLITE2 (missing: RASTERLITE2_LIBRARY RASTERLITE2_INCLUDE_DIR) 
-- Could NOT find LibKML (missing: LIBKML_BASE_LIBRARY LIBKML_INCLUDE_DIR LIBKML_DOM_LIBRARY LIBKML_ENGINE_LIBRARY) 
-- Unable to determine HDF5 C flags from HDF5 wrapper.
-- Unable to determine HDF5 C version_var from HDF5 wrapper.
-- Could NOT find HDF5 (missing: HDF5_INCLUDE_DIRS) (found version "1.12.2")
CMake Error at cmake/helpers/CheckDependentLibraries.cmake:178 (message):
  Configured to use HDF5, but not found
Call Stack (most recent call first):
  cmake/helpers/CheckDependentLibraries.cmake:502 (gdal_check_package)
  gdal.cmake:223 (include)
  CMakeLists.txt:218 (include)


-- Configuring incomplete, errors occurred!
See also "/var/tmp/portage/sci-libs/gdal-3.5.0-r3/work/gdal-3.5.0_build/CMakeFiles/CMakeOutput.log".
See also "/var/tmp/portage/sci-libs/gdal-3.5.0-r3/work/gdal-3.5.0_build/CMakeFiles/CMakeError.log".
 * ERROR: sci-libs/gdal-3.5.0-r3::gentoo failed (configure phase):
 *   cmake failed
 * 
 * Call stack:
 *     ebuild.sh, line  127:  Called src_configure
 *   environment, line 4691:  Called cmake_src_configure
 *   environment, line 1555:  Called die
 * The specific snippet of code:
 *       "${CMAKE_BINARY}" "${cmakeargs[@]}" "${CMAKE_USE_DIR}" || die "cmake failed";
 * 
 * If you need support, post the output of `emerge --info '=sci-libs/gdal-3.5.0-r3::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-libs/gdal-3.5.0-r3::gentoo'`.
!!! When you file a bug report, please include the following information:
GENTOO_VM=  CLASSPATH="" JAVA_HOME="/etc/java-config-2/current-system-vm"
JAVACFLAGS="" COMPILER=""
and of course, the output of emerge --info =gdal-3.5.0
 * The complete build log is located at '/var/log/portage/build/sci-libs/gdal-3.5.0-r3:20220520-055725.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/gdal-3.5.0-r3/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-libs/gdal-3.5.0-r3/work/gdal-3.5.0_build'
 * S: '/var/tmp/portage/sci-libs/gdal-3.5.0-r3/work/gdal-3.5.0'