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Gentoo's Bugzilla – Attachment 77059 Details for
Bug 118832
sci-biology/rebase-512 should be stabilised
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[patch]
test case output ppc-macos
phikz-orf144-ref.diff-macos (text/plain), 19.39 KB, created by
Fabian Groffen
on 2006-01-14 01:37:04 UTC
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Description:
test case output ppc-macos
Filename:
MIME Type:
Creator:
Fabian Groffen
Created:
2006-01-14 01:37:04 UTC
Size:
19.39 KB
patch
obsolete
>--- phikz-orf144-ref.restrict 2005-12-13 19:48:53.000000000 +0100 >+++ phikz-orf144.restrict 2006-01-14 10:36:39.000000000 +0100 >@@ -1,6 +1,6 @@ > ######################################## > # Program: restrict >-# Rundate: Tue Dec 13 2005 13:48:31 >+# Rundate: Sun Jan 14 2006 10:36:39 > # Report_format: table > # Report_file: phikz-orf144.restrict > ######################################## >@@ -22,14 +22,14 @@ > > Start End Enzyme_name Restriction_site 5prime 3prime 5primerev 3primerev > 1 5 TspDTI ATGAA 16 14 . . >- 28 32 SspD5I GGTGA 40 40 . . > 28 32 HphI GGTGA 40 39 . . >+ 28 32 SspD5I GGTGA 40 40 . . > 37 34 MnlI CCTC 27 26 . . >- 41 46 Hpy8I GTNNAC 43 43 . . > 41 46 HincII GTYRAC 43 43 . . >+ 41 46 Hpy8I GTNNAC 43 43 . . > 47 52 Hpy178III TCNNGA 48 50 . . >- 51 46 Eco57MI CTGRAG 31 29 . . > 51 46 BpmI CTGGAG 31 29 . . >+ 51 46 Eco57MI CTGRAG 31 29 . . > 58 61 MseI TTAA 58 60 . . > 60 65 ApoI RAATTY 60 64 . . > 61 64 Tsp509I AATT 60 64 . . >@@ -42,8 +42,8 @@ > 130 135 ApoI RAATTY 130 134 . . > 131 134 Tsp509I AATT 130 134 . . > 145 148 Tsp509I AATT 144 148 . . >- 150 155 Hpy178III TCNNGA 151 153 . . > 150 155 XbaI TCTAGA 150 154 . . >+ 150 155 Hpy178III TCNNGA 151 153 . . > 151 154 BfaI CTAG 151 153 . . > 164 160 BccI CCATC 154 155 . . > 186 189 CviJI RGCY 187 187 . . >@@ -51,27 +51,27 @@ > 203 208 SspI AATATT 205 205 . . > 222 227 PsiI TTATAA 224 224 . . > 246 249 CviRI TGCA 247 247 . . >- 257 262 BsaAI YACGTR 259 259 . . > 257 262 AcvI CACGTG 259 259 . . >- 258 261 TaiI ACGT 261 257 . . >+ 257 262 BsaAI YACGTR 259 259 . . > 258 261 MaeII ACGT 258 260 . . >+ 258 261 TaiI ACGT 261 257 . . > 260 265 BsgI GTGCAG 281 279 . . > 261 264 CviRI TGCA 262 262 . . >- 262 266 BthCI GCNGC 265 262 . . > 262 266 BisI GCNGC 263 264 . . >- 262 266 BbvI GCAGC 274 278 . . > 262 266 TseI GCWGC 262 265 . . >- 263 268 MspA1I CMGCKG 265 265 . . >+ 262 266 BbvI GCAGC 274 278 . . >+ 262 266 BthCI GCNGC 265 262 . . > 263 268 BamGI CAGCTG 265 265 . . >+ 263 268 MspA1I CMGCKG 265 265 . . > 264 267 CviJI RGCY 265 265 . . > 264 267 AluI AGCT 265 265 . . > 265 269 BthCI GCNGC 268 265 . . >- 265 269 BisI GCNGC 266 267 . . > 265 269 TseI GCWGC 265 268 . . >+ 265 269 BisI GCNGC 266 267 . . > 267 270 CviRI TGCA 268 268 . . > 269 265 BbvI GCAGC 252 256 . . >- 277 272 Eco57MI CTGRAG 257 255 . . > 277 272 BpmI CTGGAG 257 255 . . >+ 277 272 Eco57MI CTGRAG 257 255 . . > 278 274 BsrI ACTGG 274 272 . . > 280 284 TspDTI ATGAA 295 293 . . > 282 287 BsmI GAATGC 288 286 . . >@@ -80,59 +80,59 @@ > 305 315 Bce4I GCNNNNNNNGC 311 308 . . > 313 316 CviJI RGCY 314 314 . . > 319 315 BsrI ACTGG 315 313 . . >- 343 347 PfeI GAWTC 343 346 . . > 343 347 HinfI GANTC 343 346 . . >- 353 356 TaqI TCGA 353 355 . . >+ 343 347 PfeI GAWTC 343 346 . . > 353 356 EsaBC3I TCGA 354 354 . . >+ 353 356 TaqI TCGA 353 355 . . > 354 349 BsmI GAATGC 349 347 . . >- 369 372 CviJI RGCY 370 370 . . > 369 372 AluI AGCT 370 370 . . >+ 369 372 CviJI RGCY 370 370 . . > 371 375 DdeI CTNAG 371 374 . . > 380 385 PstII CATCAG 410 412 . . > 382 378 TspDTI ATGAA 368 366 . . > 383 391 AlwNI CAGNNNCTG 388 385 . . >- 384 387 CviJI RGCY 385 385 . . > 384 387 AluI AGCT 385 385 . . >+ 384 387 CviJI RGCY 385 385 . . > 388 392 BsrI ACTGG 393 391 . . > 395 400 NlaIV GGNNCC 397 397 . . > 399 413 XcmI CCANNNNNNNNNTGG 406 405 . . > 401 404 Tsp509I AATT 400 404 . . > 409 413 BsrI ACTGG 414 412 . . >- 416 419 NlaIII CATG 419 415 . . >- 416 419 FatI CATG 415 419 . . > 416 419 CviAII CATG 416 418 . . >+ 416 419 FatI CATG 415 419 . . >+ 416 419 NlaIII CATG 419 415 . . > 436 439 Tsp509I AATT 435 439 . . >- 444 447 NlaIII CATG 447 443 . . >- 444 447 FatI CATG 443 447 . . > 444 447 CviAII CATG 444 446 . . >+ 444 447 FatI CATG 443 447 . . >+ 444 447 NlaIII CATG 447 443 . . > 445 449 TspDTI ATGAA 460 458 . . >- 457 460 PabI GTAC 459 457 . . >- 457 460 Csp6I GTAC 457 459 . . > 457 460 RsaI GTAC 458 458 . . >- 466 469 ChaI GATC 469 465 . . >- 466 469 DpnI GATC 467 467 . . >- 466 469 BspKT6I GATC 468 466 . . >+ 457 460 Csp6I GTAC 457 459 . . >+ 457 460 PabI GTAC 459 457 . . > 466 469 Sau3AI GATC 465 469 . . >+ 466 469 BspKT6I GATC 468 466 . . >+ 466 469 DpnI GATC 467 467 . . >+ 466 469 ChaI GATC 469 465 . . > 468 473 MmeI TCCRAC 493 491 . . > 470 466 AlwI GGATC 460 461 . . > 472 476 BsrI ACTGG 477 475 . . > 472 477 BmrI ACTGGG 482 481 . . >- 482 487 SnaBI TACGTA 484 484 . . > 482 487 BsaAI YACGTR 484 484 . . >- 483 486 TaiI ACGT 486 482 . . >+ 482 487 SnaBI TACGTA 484 484 . . > 483 486 MaeII ACGT 483 485 . . >+ 483 486 TaiI ACGT 486 482 . . > 489 494 BloHI RGATCY 489 493 . . >- 490 493 ChaI GATC 493 489 . . >- 490 493 DpnI GATC 491 491 . . >- 490 493 BspKT6I GATC 492 490 . . > 490 493 Sau3AI GATC 489 493 . . >- 494 499 BsaAI YACGTR 496 496 . . >+ 490 493 BspKT6I GATC 492 490 . . >+ 490 493 DpnI GATC 491 491 . . >+ 490 493 ChaI GATC 493 489 . . > 494 490 AlwI GGATC 484 485 . . >- 495 498 TaiI ACGT 498 494 . . >+ 494 499 BsaAI YACGTR 496 496 . . > 495 498 MaeII ACGT 495 497 . . >+ 495 498 TaiI ACGT 498 494 . . > 508 511 MseI TTAA 508 510 . . >- 514 519 NlaIV GGNNCC 516 516 . . > 514 519 BanI GGYRCC 514 518 . . >+ 514 519 NlaIV GGNNCC 516 516 . . > 517 512 TaqII CACCCA 502 500 . . > 525 528 Tsp509I AATT 524 528 . . > 527 530 MseI TTAA 527 529 . . >@@ -140,78 +140,78 @@ > 541 546 SspI AATATT 543 543 . . > 550 546 MboII GAAGA 538 537 . . > 560 563 MseI TTAA 560 562 . . >- 564 567 TaiI ACGT 567 563 . . > 564 567 MaeII ACGT 564 566 . . >+ 564 567 TaiI ACGT 567 563 . . > 566 571 Hpy8I GTNNAC 568 568 . . > 577 586 BsaBI GATNNNNATC 581 581 . . >- 583 586 ChaI GATC 586 582 . . >- 583 586 DpnI GATC 584 584 . . >- 583 586 BspKT6I GATC 585 583 . . > 583 586 Sau3AI GATC 582 586 . . >- 594 597 CviJI RGCY 595 595 . . >+ 583 586 BspKT6I GATC 585 583 . . >+ 583 586 DpnI GATC 584 584 . . >+ 583 586 ChaI GATC 586 582 . . > 594 597 AluI AGCT 595 595 . . >- 607 611 UnbI GGNCC 606 611 . . >- 607 611 FmuI GGNCC 610 607 . . >- 607 611 BmgT120I GGNCC 608 609 . . >+ 594 597 CviJI RGCY 595 595 . . > 607 611 Sau96I GGNCC 607 610 . . >- 608 611 CviJI RGCY 609 609 . . >+ 607 611 BmgT120I GGNCC 608 609 . . >+ 607 611 FmuI GGNCC 610 607 . . >+ 607 611 UnbI GGNCC 606 611 . . > 608 611 BanAI GGCC 609 609 . . >- 610 614 BssKI CCNGG 609 614 . . >- 610 614 ScrFI CCNGG 611 612 . . >- 610 614 AjnI CCWGG 609 614 . . >+ 608 611 CviJI RGCY 609 609 . . > 610 614 AeuI CCWGG 611 612 . . >+ 610 614 AjnI CCWGG 609 614 . . >+ 610 614 ScrFI CCNGG 611 612 . . >+ 610 614 BssKI CCNGG 609 614 . . > 614 619 BsgI GTGCAG 635 633 . . > 615 618 CviRI TGCA 616 616 . . >- 616 620 BthCI GCNGC 619 616 . . >- 616 620 BisI GCNGC 617 618 . . > 616 620 BbvI GCAGC 628 632 . . > 616 620 TseI GCWGC 616 619 . . >+ 616 620 BisI GCNGC 617 618 . . >+ 616 620 BthCI GCNGC 619 616 . . > 618 621 CviJI RGCY 619 619 . . > 620 623 Sth132I CCCG 627 631 . . > 622 626 Hpy99I CGWCG 626 621 . . > 629 634 Hpy178III TCNNGA 630 632 . . > 636 642 TspRI CASTGNN 642 633 . . > 637 641 BsrI ACTGG 642 640 . . >- 639 644 HaeI WGGCCW 641 641 . . >- 639 644 EaeI YGGCCR 639 643 . . > 639 644 MscI TGGCCA 641 641 . . >- 640 643 CviJI RGCY 641 641 . . >+ 639 644 EaeI YGGCCR 639 643 . . >+ 639 644 HaeI WGGCCW 641 641 . . > 640 643 BanAI GGCC 641 641 . . >+ 640 643 CviJI RGCY 641 641 . . > 647 651 TspDTI ATGAA 662 660 . . > 650 653 Tsp509I AATT 649 653 . . >- 654 657 CviJI RGCY 655 655 . . > 654 657 AluI AGCT 655 655 . . >+ 654 657 CviJI RGCY 655 655 . . > 655 659 BthCI GCNGC 658 655 . . >- 655 659 BisI GCNGC 656 657 . . > 655 659 TseI GCWGC 655 658 . . >+ 655 659 BisI GCNGC 656 657 . . > 659 655 BbvI GCAGC 642 646 . . >- 678 681 CviJI RGCY 679 679 . . > 678 681 AluI AGCT 679 679 . . >- 680 684 DdeI CTNAG 680 683 . . >+ 678 681 CviJI RGCY 679 679 . . > 680 684 BspCNI CTCAG 693 691 . . > 680 684 BseMII CTCAG 694 692 . . >+ 680 684 DdeI CTNAG 680 683 . . > 685 679 Bpu10I CCTNAGC 680 683 . . > 691 695 BccI CCATC 699 700 . . > 702 707 PsiI TTATAA 704 704 . . > 715 719 BssIMI GGGTC 716 719 . . >- 716 712 BccI CCATC 706 707 . . > 716 722 BstEII GGTNACC 716 721 . . >- 717 721 MaeIII GTNAC 716 721 . . >+ 716 712 BccI CCATC 706 707 . . > 717 721 Tsp45I GTSAC 716 721 . . >- 722 718 SspD5I GGTGA 709 709 . . >+ 717 721 MaeIII GTNAC 716 721 . . > 722 718 HphI GGTGA 710 709 . . >+ 722 718 SspD5I GGTGA 709 709 . . > 732 737 Hpy178III TCNNGA 733 735 . . > 741 746 PsiI TTATAA 743 743 . . > 748 751 MseI TTAA 748 750 . . >- 753 757 StsI GGATG 767 771 . . >- 753 757 FokI GGATG 766 770 . . > 753 757 BseGI GGATG 759 757 . . >+ 753 757 FokI GGATG 766 770 . . >+ 753 757 StsI GGATG 767 771 . . > 758 754 BccI CCATC 748 749 . . > 765 768 CviRI TGCA 766 766 . . > 766 770 BthCI GCNGC 769 766 . . >+ 766 770 TseI GCWGC 766 769 . . > 766 770 BisI GCNGC 767 768 . . > 766 770 BbvI GCAGC 778 782 . . >- 766 770 TseI GCWGC 766 769 . . > > #--------------------------------------- > #---------------------------------------
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bug 118832
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