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Gentoo's Bugzilla – Attachment 768837 Details for
Bug 836814
sci-biology/gmap-2020.10.27 fails tests on MUSL
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build.log
build.log (text/plain), 424.47 KB, created by
Agostino Sarubbo
on 2022-04-05 07:49:21 UTC
(
hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2022-04-05 07:49:21 UTC
Size:
424.47 KB
patch
obsolete
> * Package: sci-biology/gmap-2020.10.27 > * Repository: gentoo > * Maintainer: sci-biology@gentoo.org > * USE: abi_x86_64 amd64 elibc_musl kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo-mirror/gentoo/commit/525c118216dd8499c08974e2fd9fd0f42279dd88 (Tue Apr 5 07:04:39 UTC 2022) >@@@@@ END @@@@@ > > > >################## ># emerge --info: # >################## >Portage 3.0.30 (python 3.10.4-final-0, default/linux/amd64/17.0/musl/hardened, gcc-11.2.1, musl-1.2.2-r8, 4.19.174-gentoo x86_64) >================================================================= >System uname: Linux-4.19.174-gentoo-x86_64-Intel-R-_Xeon-R-_CPU_E5-2650_v4_@_2.20GHz-with-libc >KiB Mem: 264046488 total, 55876616 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Tue, 05 Apr 2022 07:04:38 +0000 >sh bash 5.1_p16 >ld GNU ld (Gentoo 2.38 p3) 2.38 >app-misc/pax-utils: 1.3.3::gentoo >app-shells/bash: 5.1_p16::gentoo >dev-lang/perl: 5.34.1::gentoo >dev-lang/python: 3.8.13::gentoo, 3.9.12::gentoo, 3.10.4::gentoo >dev-util/cmake: 3.23.0::gentoo >dev-util/meson: 0.61.4-r2::gentoo >sys-apps/baselayout: 2.8::gentoo >sys-apps/openrc: 0.44.10::gentoo >sys-apps/sandbox: 2.29::gentoo >sys-devel/autoconf: 2.71-r1::gentoo >sys-devel/automake: 1.16.5::gentoo >sys-devel/binutils: 2.38-r1::gentoo >sys-devel/binutils-config: 5.4.1::gentoo >sys-devel/gcc: 11.2.1_p20220115::gentoo >sys-devel/gcc-config: 2.5-r1::gentoo >sys-devel/libtool: 2.4.7::gentoo >sys-devel/make: 4.3::gentoo >sys-kernel/linux-headers: 5.17::gentoo (virtual/os-headers) >sys-libs/musl: 1.2.2-r8::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-verify-max-age: 24 > sync-rsync-verify-metamanifest: yes > sync-rsync-verify-jobs: 1 > sync-rsync-extra-opts: > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* gmap" >CBUILD="x86_64-gentoo-linux-musl" >CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >CHOST="x86_64-gentoo-linux-musl" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/fonts/fonts.conf /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >DISTDIR="/var/tmp/portage/sci-biology/gmap-2020.10.27/distdir" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" >FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg buildpkg-live config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0" >GENTOO_MIRRORS="http://mirror.leaseweb.com/gentoo/ http://ftp.snt.utwente.nl/pub/os/linux/gentoo/ http://ftp.belnet.be/pub/rsync.gentoo.org/gentoo/ http://distfiles.gentoo.org" >INSTALL_MASK="charset.alias /usr/share/locale/locale.alias" >LANG="C.UTF8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" >MAKEOPTS="-j16" >PKGDIR="/root/tbci/binpkg" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >SHELL="/bin/bash" >USE="acl amd64 bzip2 crypt elogind hardened iconv ipv6 jumbo-build libglvnd libtirpc native-symlinks ncurses nls nptl openmp pam pcre pie readline seccomp split-usr ssl ssp test unicode xattr xtpax zlib" ABI_X86="64" ELIBC="musl" KERNEL="linux" USERLAND="GNU" >Unset: ADDR2LINE, AR, ARFLAGS, AS, ASFLAGS, CC, CCLD, CONFIG_SHELL, CPP, CPPFLAGS, CTARGET, CXX, CXXFILT, ELFEDIT, EXTRA_ECONF, F77FLAGS, FC, GCOV, GPROF, LC_ALL, LD, LEX, LFLAGS, LIBTOOL, LINGUAS, MAKE, MAKEFLAGS, NM, OBJCOPY, OBJDUMP, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RANLIB, READELF, RUSTFLAGS, SIZE, STRINGS, STRIP, YACC, YFLAGS > > > > > >############################## ># emerge history (qlop -mv): # >############################## > > > > >####################################### ># installed packages (qlist -ICvUSS): # >####################################### >acct-group/audio-0-r1:0 >acct-group/cdrom-0-r1:0 >acct-group/dialout-0-r1:0 >acct-group/disk-0-r1:0 >acct-group/input-0-r1:0 >acct-group/kmem-0-r1:0 >acct-group/kvm-0-r1:0 >acct-group/lp-0-r1:0 >acct-group/man-0-r1:0 >acct-group/messagebus-0-r1:0 >acct-group/portage-0:0 >acct-group/render-0-r1:0 >acct-group/sgx-0:0 >acct-group/sshd-0-r1:0 >acct-group/tape-0-r1:0 >acct-group/tty-0-r1:0 >acct-group/video-0-r1:0 >acct-user/man-1-r1:0 >acct-user/messagebus-0-r1:0 >acct-user/portage-0:0 >acct-user/sshd-0-r1:0 >app-admin/eselect-1.4.20:0 -doc -emacs -vim-syntax >app-admin/perl-cleaner-2.30:0 >app-arch/bzip2-1.0.8-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static -static-libs >app-arch/gzip-1.11:0 -pic -static >app-arch/libarchive-3.6.0:0/13 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl -blake2 bzip2 e2fsprogs -expat iconv -lz4 lzma -lzo -nettle -static-libs -verify-sig xattr -zstd >app-arch/tar-1.34:0 acl -minimal nls -selinux xattr >app-arch/unzip-6.0_p26:0 bzip2 -natspec unicode >app-arch/xz-utils-5.2.5-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 extra-filters nls split-usr -static-libs >app-arch/zstd-1.5.2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -lz4 -static-libs threads >app-crypt/gnupg-2.3.4-r2:0 bzip2 -doc -ldap nls readline -selinux smartcard ssl -test tofu -tools -tpm -usb -user-socket -verify-sig -wks-server >app-crypt/gpgme-1.17.1:1/11.6.15 -common-lisp cxx -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -qt5 -static-libs -verify-sig >app-crypt/libb2-0.98.1-r3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -native-cflags openmp -static-libs >app-crypt/libmd-1.0.4:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >app-crypt/pinentry-1.2.0:0 -caps -efl -emacs -gnome-keyring -gtk ncurses -qt5 >app-crypt/rhash-1.4.2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug nls ssl -static-libs >app-editors/nano-6.2:0 -debug -justify -magic -minimal ncurses nls spell split-usr -static unicode >app-eselect/eselect-fontconfig-20220403:0 >app-eselect/eselect-iptables-20220320:0 >app-eselect/eselect-lib-bin-symlink-0.1.1-r1:0 >app-eselect/eselect-pinentry-0.7.2:0 >app-misc/c_rehash-1.7-r1:0 >app-misc/ca-certificates-20211016.3.77:0 -cacert >app-misc/editor-wrapper-4-r1:0 >app-misc/mime-types-2.1.53:0 -nginx >app-misc/pax-utils-1.3.3:0 -caps -debug -python -python_single_target_python3_10 -python_single_target_python3_8 python_single_target_python3_9 seccomp >app-misc/tmux-3.2a:0 -debug -selinux -utempter -vim-syntax >app-portage/eix-0.36.1:0 -debug -doc nls -sqlite >app-portage/elt-patches-20211104:0 >app-portage/gemato-16.2:0 gpg -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test -tools >app-portage/gentoolkit-0.5.1-r1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >app-portage/portage-utils-0.93.3:0 nls openmp qmanifest qtegrity -static >app-shells/bash-5.1_p16:0 -afs -bashlogger -examples -mem-scramble net nls -plugins readline >app-shells/push-3.4:0 >app-shells/quoter-4.2:0 >app-text/ansifilter-2.18:0 -qt5 >app-text/build-docbook-catalog-2.2:0 >app-text/docbook-xml-dtd-4.5-r2:4.5 >app-text/docbook-xml-dtd-4.4-r3:4.4 >app-text/docbook-xml-dtd-4.2-r3:4.2 >app-text/docbook-xml-dtd-4.1.2-r7:4.1.2 >app-text/docbook-xsl-stylesheets-1.79.1-r2:0 -ruby >app-text/manpager-1:0 >app-text/sgml-common-0.6.3-r7:0 >app-text/xmlto-0.0.28-r8:0 -latex -text >dev-db/sqlite-3.38.2:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -doc -icu readline -secure-delete -static-libs -tcl -test -tools >dev-lang/perl-5.34.1:0/5.34 -berkdb -debug -doc -gdbm ithreads -minimal -quadmath >dev-lang/python-3.10.4:3.10 -bluetooth -build -examples gdbm hardened -libedit -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig -wininst xml >dev-lang/python-3.9.12:3.9 -bluetooth -build -examples gdbm hardened -lto ncurses -pgo readline sqlite ssl -test -tk -verify-sig -wininst xml >dev-lang/python-3.8.13:3.8 -bluetooth -build -examples gdbm hardened ncurses readline sqlite ssl -test -tk -verify-sig -wininst xml >dev-lang/python-exec-2.4.8:2 native-symlinks python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-lang/python-exec-conf-2.4.6:2 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 >dev-lang/tcl-8.6.12:0/8.6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug threads >dev-libs/elfutils-0.186:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma nls -static-libs -test -threads utils -valgrind -zstd >dev-libs/expat-2.4.8:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples -static-libs unicode >dev-libs/glib-2.72.0:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -dbus -debug elf -fam -gtk-doc mime -selinux -static-libs -sysprof -systemtap -test -utils xattr >dev-libs/gmp-6.2.1-r2:0/10.4 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cxx -doc -pic -static-libs >dev-libs/gobject-introspection-1.72.0:0 -doctool -gtk-doc -python_single_target_python3_10 -python_single_target_python3_8 python_single_target_python3_9 -test >dev-libs/gobject-introspection-common-1.72.0:0 >dev-libs/isl-0.24-r2:0/23 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/jsoncpp-1.9.5:0/25 -doc -test >dev-libs/libassuan-2.5.5:0 >dev-libs/libbsd-0.11.6:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -verify-sig >dev-libs/libevent-2.1.12:0/2.1-7 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 clock-gettime -debug -malloc-replacement ssl -static-libs -test threads -verbose-debug >dev-libs/libffi-3.4.2-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -exec-static-trampoline -pax-kernel -static-libs -test >dev-libs/libgcrypt-1.10.1:0/20 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_aes -cpu_flags_arm_neon -cpu_flags_arm_sha1 -cpu_flags_arm_sha2 -cpu_flags_ppc_altivec -cpu_flags_ppc_vsx2 -cpu_flags_ppc_vsx3 cpu_flags_x86_aes cpu_flags_x86_avx cpu_flags_x86_avx2 -cpu_flags_x86_padlock -cpu_flags_x86_sha cpu_flags_x86_sse4_1 -doc o-flag-munging -static-libs -verify-sig >dev-libs/libgpg-error-1.44:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -common-lisp nls -static-libs >dev-libs/libksba-1.6.0:0 -static-libs >dev-libs/libltdl-2.4.7:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/libpcre-8.45-r1:3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 cxx -jit -libedit pcre16 pcre32 readline split-usr -static-libs unicode zlib >dev-libs/libpcre2-10.39-r1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -jit -libedit pcre16 pcre32 readline split-usr -static-libs unicode zlib >dev-libs/libpipeline-1.5.5:0 -test >dev-libs/libtasn1-4.18.0:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs -test -valgrind >dev-libs/libunistring-1.0:0/2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs >dev-libs/libuv-1.44.1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >dev-libs/libxml2-2.9.13-r1:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -debug -examples -icu -lzma python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 readline -static-libs -test >dev-libs/libxslt-1.1.35:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 crypt -debug -examples -static-libs >dev-libs/lzo-2.10:2 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -examples split-usr -static-libs >dev-libs/mpc-1.2.1:0/3 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/mpfr-4.1.0_p13-r1:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >dev-libs/nettle-3.7.3:0/8-6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm -cpu_flags_arm_neon cpu_flags_x86_aes -cpu_flags_x86_sha -doc gmp -static-libs -test >dev-libs/npth-1.6-r1:0 >dev-libs/openssl-1.1.1n:0/1.1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 asm cpu_flags_x86_sse2 -rfc3779 -sctp -sslv3 -static-libs -test -tls-compression -tls-heartbeat -vanilla -verify-sig -verify-sig >dev-libs/popt-1.18:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nls -static-libs >dev-perl/Devel-CheckLib-1.140.0:0 -test >dev-perl/Encode-Locale-1.50.0-r1:0 -test >dev-perl/File-Listing-6.140.0:0 -test >dev-perl/HTML-Parser-3.760.0:0 -test >dev-perl/HTML-Tagset-3.200.0-r2:0 >dev-perl/HTTP-Cookies-6.100.0:0 -test >dev-perl/HTTP-Date-6.50.0:0 >dev-perl/HTTP-Message-6.330.0:0 -test -test >dev-perl/HTTP-Negotiate-6.10.0-r2:0 -test >dev-perl/IO-HTML-1.4.0:0 -test >dev-perl/IO-Socket-INET6-2.720.0-r2:0 -test >dev-perl/IO-Socket-SSL-2.74.0:0 -examples -idn -test >dev-perl/libwww-perl-6.600.0-r1:0 ssl -test >dev-perl/Locale-gettext-1.70.0-r1:0 -test >dev-perl/LWP-MediaTypes-6.40.0:0 -test >dev-perl/LWP-Protocol-https-6.100.0:0 -test >dev-perl/Module-Build-0.423.100:0 -test >dev-perl/Mozilla-CA-20999999-r1:0 -test >dev-perl/Net-HTTP-6.210.0:0 -minimal -test >dev-perl/Net-SSLeay-1.900.0:0 -examples -examples -minimal -test >dev-perl/Socket6-0.290.0:0 -test >dev-perl/TimeDate-2.330.0-r1:0 -test >dev-perl/Try-Tiny-0.310.0:0 -minimal -test >dev-perl/URI-5.100.0:0 -test >dev-perl/WWW-RobotRules-6.20.0-r2:0 -test >dev-perl/XML-Parser-2.460.0-r2:0 >dev-python/appdirs-1.4.4-r2:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 >dev-python/certifi-3021.3.16-r1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-python/charset_normalizer-2.0.12:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-python/flit_core-3.7.1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-python/idna-3.3:0 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python_targets_python3_8 python_targets_python3_9 xtpax >dev-python/PySocks-1.7.1-r1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 >dev-python/requests-2.27.1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -socks5 -test >dev-python/setuptools-61.3.1-r1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-python/setuptools_scm-6.4.1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-python/tomli-2.0.1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-python/urllib3-1.26.9:0 -brotli -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -test >dev-python/wheel-0.37.1-r1:0 -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 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-gnome-keyring gpg -highlight iconv -mediawiki -mediawiki-experimental nls pcre -perforce -perl -ppcsha1 -python_single_target_python3_10 -python_single_target_python3_8 python_single_target_python3_9 -subversion -test threads -tk webdav -xinetd >media-fonts/liberation-fonts-2.1.3:0 -X -X -fontforge >media-gfx/graphite2-1.3.14_p20210810-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -perl -test >media-libs/fontconfig-2.14.0-r1:1.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -doc -static-libs -test >media-libs/freetype-2.12.0:2 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 adobe-cff -brotli bzip2 cleartype-hinting -debug -doc -fontforge harfbuzz -infinality png -static-libs -svg -utils >media-libs/harfbuzz-4.2.0:0/4.0.0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 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>sys-apps/debianutils-5.7:0 installkernel -static >sys-apps/diffutils-3.8:0 nls -static >sys-apps/elfix-0.9.5:0 -ptpax xtpax >sys-apps/file-5.41:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 bzip2 -lzma -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -seccomp -static-libs zlib >sys-apps/findutils-4.9.0:0 nls -selinux -static -test >sys-apps/gawk-5.1.1-r1:0 -mpfr nls readline >sys-apps/gentoo-functions-0.15:0 >sys-apps/grep-3.7:0 nls pcre -static >sys-apps/groff-1.22.4:0 -X -examples -uchardet >sys-apps/help2man-1.48.5:0 nls >sys-apps/install-xattr-0.8:0 >sys-apps/iproute2-5.17.0:0 -atm -berkdb -bpf -caps -elf iptables -libbsd -minimal -selinux >sys-apps/kbd-2.4.0:0 nls pam -test >sys-apps/kmod-29:0 -debug -doc lzma -pkcs7 -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs tools zlib -zstd >sys-apps/less-590:0 pcre unicode >sys-apps/man-db-2.10.2:0 -berkdb manpager -nls seccomp -selinux -static-libs zlib >sys-apps/net-tools-2.10:0 arp hostname ipv6 -nis nls -plipconfig -selinux -slattach -static >sys-apps/openrc-0.44.10:0 -audit -bash -debug ncurses netifrc -newnet pam -selinux -sysv-utils unicode >sys-apps/portage-3.0.30-r1:0 -apidoc -build -doc -gentoo-dev ipc native-extensions -python_targets_pypy3 python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 rsync-verify -selinux -test xattr >sys-apps/sandbox-2.29:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 nnp >sys-apps/sed-4.8:0 acl nls -selinux -static >sys-apps/shadow-4.11.1:0/4 acl -audit -bcrypt -cracklib nls pam -selinux -skey split-usr -su xattr >sys-apps/systemd-tmpfiles-249.9:0 -selinux -test >sys-apps/sysvinit-3.01:0 -ibm -selinux -static >sys-apps/texinfo-6.8:0 nls standalone -static >sys-apps/util-linux-2.38:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 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>sys-fs/e2fsprogs-1.46.5:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cron -fuse -lto -nls split-usr -static-libs threads tools >sys-fs/udev-249.9:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 acl kmod -selinux split-usr -test >sys-fs/udev-init-scripts-35:0 >sys-kernel/installkernel-gentoo-5:0 -grub >sys-kernel/linux-headers-5.17:0 -headers-only >sys-libs/argp-standalone-1.4.1-r1:0 -static-libs >sys-libs/binutils-libs-2.38-r1:0/2.38 -64-bit-bfd -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cet -multitarget nls -static-libs >sys-libs/fts-standalone-1.2.7:0 -static-libs >sys-libs/gdbm-1.23:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 berkdb nls readline -static-libs >sys-libs/libcap-2.63:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 pam split-usr -static-libs -tools >sys-libs/libseccomp-2.5.3:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -python python_targets_python3_10 python_targets_python3_8 python_targets_python3_9 -static-libs -test >sys-libs/musl-1.2.2-r8:0 -headers-only >sys-libs/ncurses-6.3_p20211106:0/6 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -ada cxx -debug -doc -gpm -minimal -profile split-usr -static-libs -test tinfo -trace >sys-libs/obstack-standalone-1.1:0 -static-libs >sys-libs/pam-1.5.2-r1:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -audit -berkdb -debug -filecaps -nis -selinux >sys-libs/readline-8.1_p2:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 split-usr -static-libs unicode -utils >sys-libs/zlib-1.2.12-r2:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 minizip split-usr -static-libs -verify-sig >sys-process/procps-3.3.17-r1:0/8 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 elogind kill -modern-top ncurses nls -selinux split-usr -static-libs -systemd -test unicode >sys-process/psmisc-23.4-r1:0 -X ipv6 nls -selinux >virtual/acl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/awk-1:0 >virtual/dev-manager-0-r2:0 >virtual/editor-0-r3:0 >virtual/libc-1-r1:0 >virtual/libcrypt-1-r1:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -static-libs >virtual/libelf-3:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libiconv-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libintl-0-r2:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 >virtual/libudev-232-r5:0/1 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -systemd >virtual/man-0-r4:0 >virtual/os-headers-0-r2:0 >virtual/package-manager-1:0 >virtual/pager-0:0 >virtual/perl-Carp-1.520.0-r1:0 >virtual/perl-Compress-Raw-Bzip2-2.101.0:0 >virtual/perl-Compress-Raw-Zlib-2.101.0:0 >virtual/perl-CPAN-2.290.0:0 >virtual/perl-CPAN-Meta-2.150.10-r5:0 >virtual/perl-CPAN-Meta-Requirements-2.140.0-r7:0 >virtual/perl-CPAN-Meta-YAML-0.18.0-r7:0 >virtual/perl-Data-Dumper-2.179.0:0 >virtual/perl-Digest-MD5-2.580.0:0 >virtual/perl-Encode-3.120.0:0 >virtual/perl-Exporter-5.760.0:0 >virtual/perl-ExtUtils-CBuilder-0.280.236:0 >virtual/perl-ExtUtils-Install-2.200.0:0 >virtual/perl-ExtUtils-MakeMaker-7.620.0:0 >virtual/perl-ExtUtils-Manifest-1.730.0:0 >virtual/perl-ExtUtils-ParseXS-3.430.0:0 >virtual/perl-File-Spec-3.800.0:0 >virtual/perl-File-Temp-0.231.100:0 >virtual/perl-Getopt-Long-2.520.0:0 >virtual/perl-IO-1.460.0:0 >virtual/perl-IO-Compress-2.102.0:0 >virtual/perl-IO-Socket-IP-0.410.0:0 >virtual/perl-JSON-PP-4.60.0:0 >virtual/perl-libnet-3.130.0:0 ssl >virtual/perl-MIME-Base64-3.160.0:0 >virtual/perl-Module-Metadata-1.0.37-r1:0 >virtual/perl-parent-0.238.0-r1:0 >virtual/perl-Parse-CPAN-Meta-2.150.10-r5:0 >virtual/perl-Perl-OSType-1.10.0-r5:0 >virtual/perl-podlators-4.140.0-r2:0 >virtual/perl-Scalar-List-Utils-1.560.0:0 >virtual/perl-Test-Harness-3.430.0:0 >virtual/perl-Text-ParseWords-3.300.0-r8:0 >virtual/perl-Time-Local-1.300.0:0 >virtual/perl-version-0.992.800:0 >virtual/perl-XSLoader-0.300.0-r4:0 >virtual/pkgconfig-2-r1:0 >virtual/service-manager-1:0 >virtual/ssh-0:0 -minimal >virtual/tmpfiles-0-r1:0 >virtual/ttf-fonts-1-r1:0 >virtual/udev-217-r3:0 >virtual/yacc-0:0 >www-client/pybugz-0.13-r1:0 python_targets_python3_8 python_targets_python3_9 >x11-libs/cairo-1.16.0-r5:0 -X -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -aqua -debug -gles2-only glib -opengl -static-libs svg -utils -valgrind >x11-libs/pixman-0.40.0:0 -abi_mips_n32 -abi_mips_n64 -abi_mips_o32 -abi_s390_32 -abi_s390_64 -abi_x86_32 abi_x86_64 -abi_x86_x32 -cpu_flags_arm_iwmmxt -cpu_flags_arm_iwmmxt2 -cpu_flags_arm_neon -cpu_flags_ppc_altivec cpu_flags_x86_mmxext cpu_flags_x86_sse2 cpu_flags_x86_ssse3 -loongson2f -static-libs >x11-misc/shared-mime-info-2.2:0 -test > > >####################### ># build.log # >####################### >>>> Unpacking source... >>>> Unpacking gmap-gsnap-2020-10-27.tar.gz to /var/tmp/portage/sci-biology/gmap-2020.10.27/work >>>> Source unpacked in /var/tmp/portage/sci-biology/gmap-2020.10.27/work >>>> Preparing source in /var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27 ... > * Applying gmap-2020.10.27-fno-common.patch ... > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27 ... > * econf: updating gmap-2020-10-27/config/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating gmap-2020-10-27/config/config.sub with /usr/share/gnuconfig/config.sub >./configure --prefix=/usr --build=x86_64-gentoo-linux-musl --host=x86_64-gentoo-linux-musl --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/gmap-2020.10.27 --htmldir=/usr/share/doc/gmap-2020.10.27/html --libdir=/usr/lib >checking package version... 2020-10-27 >loading default site script ./config.site >checking CFLAGS... -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 >checking build system type... x86_64-gentoo-linux-musl >checking host system type... x86_64-gentoo-linux-musl >checking target system type... x86_64-gentoo-linux-musl >checking for non-Intel CPU... no >checking for x86_64-gentoo-linux-musl-gcc... x86_64-gentoo-linux-musl-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-gentoo-linux-musl-gcc accepts -g... yes >checking for x86_64-gentoo-linux-musl-gcc option to accept ISO C89... none needed >checking for special C compiler options needed for large files... no >checking for _FILE_OFFSET_BITS value needed for large files... no >checking for a BSD-compatible install... /usr/lib/portage/python3.10/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking for style of include used by make... GNU >checking whether make supports nested variables... yes >checking dependency style of x86_64-gentoo-linux-musl-gcc... none >checking whether to enable maintainer-specific portions of Makefiles... no >checking bindir... /usr/bin >checking for a working version of perl... /usr/bin/perl >checking for x86_64-gentoo-linux-musl-gcc... (cached) x86_64-gentoo-linux-musl-gcc >checking whether we are using the GNU C compiler... (cached) yes >checking whether x86_64-gentoo-linux-musl-gcc accepts -g... (cached) yes >checking for x86_64-gentoo-linux-musl-gcc option to accept ISO C89... (cached) none needed >checking whether x86_64-gentoo-linux-musl-gcc and cc understand -c and -o together... yes >checking for C compiler vendor... gnu >checking for rint in -lm... yes >checking whether to use MPI_File for input... not specified so enabled by default >checking for pthreads feature... not specified so enabled by default >checking for the pthreads library -lpthreads... no >checking whether pthreads work without any flags... yes >checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE >checking if more special flags are required for pthreads... no >checking for cc_r... x86_64-gentoo-linux-musl-gcc >checking how to run the C preprocessor... x86_64-gentoo-linux-musl-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for dirent.h that defines DIR... yes >checking for library containing opendir... none required >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking fcntl.h usability... yes >checking fcntl.h presence... yes >checking for fcntl.h... yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking stddef.h usability... yes >checking stddef.h presence... yes >checking for stddef.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for strings.h... (cached) yes >checking for unistd.h... (cached) yes >checking for sys/types.h... (cached) yes >checking for inline... inline >checking whether byte ordering is bigendian... no >checking for an ANSI C-conforming const... yes >checking for working volatile... yes >checking for size_t... yes >checking for off_t... yes >checking for caddr_t... yes >checking size of unsigned long... 8 >checking size of unsigned long long... 8 >checking size of off_t... 8 >checking for _LARGEFILE_SOURCE value needed for large files... no >checking whether alloca is enabled... not specified so disabled by default >checking whether mmap is enabled... not specified so enabled by default >checking for working mmap with MAP_FIXED... yes >checking for working mmap with MAP_VARIABLE... no >checking for MAP_FILE in mmap... yes >checking for MAP_VARIABLE in mmap... no >checking for MAP_SHARED in mmap... yes >checking for MAP_PRIVATE in mmap... yes >checking for MAP_FAILED in mmap... yes >checking for MADV_DONTNEED in madvise... yes >checking for MADV_WILLNEED in madvise... yes >checking for MADV_RANDOM in madvise... yes >checking for MADV_SEQUENTIAL in madvise... yes >checking for SHM_NORESERVE in shmget... yes >checking for ceil... yes >checking for floor... yes >checking for index... yes >checking for log... yes >checking for madvise... yes >checking for memcpy... yes >checking for memmove... yes >checking for memset... yes >checking for munmap... yes >checking for pow... yes >checking for rint... yes >checking for stat64... yes >checking for strtoul... yes >checking for sysconf... yes >checking for sysctl... no >checking for sigaction... yes >checking for shmget... yes >checking for shmctl... yes >checking for shmat... yes >checking for shmdt... yes >checking for semget... yes >checking for semctl... yes >checking for semop... yes >checking for struct stat64... no >checking for pagesize via sysconf... yes >checking for pagesize via sysctl... no >checking whether fopen accepts "b" mode... yes >checking whether fopen accepts "t" mode... yes >checking whether C compiler accepts -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -mpopcnt... yes >checking for __builtin_popcount... yes >checking for __builtin_clz... yes >checking for __builtin_ctz... yes >checking for bsr instruction in assembly... yes >checking compiler is defective and requires an immediate in sse2 shift commands... no >checking for _mm_extract_epi64... yes >checking for _mm_popcnt_u64... yes >checking for whether simd is enabled... not specified so enabled by default >checking for sse2 support... yes >checking for ssse3 support... yes >checking for sse4.1 support... yes >checking for sse4.2 support... yes >checking for popcnt support... yes >checking for bmi1 support... no >checking for avx2 support... yes >checking for bmi2 support... no >checking for avx512 support... no >checking for avx512bw and avx512vl support... no >checking whether C compiler accepts -msse2... yes >checking for emmintrin.h header file... yes >checking whether C compiler accepts -msse2 -mssse3... yes >checking for tmmintrin.h header file... yes >checking whether C compiler accepts -msse2 -mssse3 -msse4.1... yes >checking for smmintrin.h header file... yes >checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2... yes >checking for nmmintrin.h header file... yes >checking for mm_popcnt run support... yes >checking whether C compiler accepts -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2... yes >checking for immintrin.h header file... yes >checking gmapdb... /usr/share >checking MAX_STACK_READLENGTH... 300 >checking for zlib support... enabled >checking zlib.h usability... yes >checking zlib.h presence... yes >checking for zlib.h... yes >checking for gzopen in -lz... yes >checking for gzeof in -lz... yes >checking for gzgetc in -lz... yes >checking for gzgets in -lz... yes >checking for gzclose in -lz... yes >checking if zlib package is complete... working >checking for gzbuffer in -lz... yes >checking for bzlib support... enabled >checking bzlib.h usability... yes >checking bzlib.h presence... yes >checking for bzlib.h... yes >checking for BZ2_bzReadOpen in -lbz2... yes >checking for BZ2_bzRead in -lbz2... yes >checking for BZ2_bzReadClose in -lbz2... yes >checking if bzlib package is complete... working >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating src/Makefile >config.status: creating util/Makefile >config.status: creating util/gmap_process.pl >config.status: creating util/gmap_build.pl >config.status: creating util/gmap_cat.pl >config.status: creating util/md_coords.pl >config.status: creating util/fa_coords.pl >config.status: creating util/psl_splicesites.pl >config.status: creating util/psl_introns.pl >config.status: creating util/psl_genes.pl >config.status: creating util/ensembl_genes.pl >config.status: creating util/gtf_splicesites.pl >config.status: creating util/gtf_transcript_splicesites.pl >config.status: creating util/gtf_introns.pl >config.status: creating util/gtf_genes.pl >config.status: creating util/gff3_splicesites.pl >config.status: creating util/gff3_introns.pl >config.status: creating util/gff3_genes.pl >config.status: creating util/dbsnp_iit.pl >config.status: creating util/gvf_iit.pl >config.status: creating util/vcf_iit.pl >config.status: creating tests/Makefile >config.status: creating tests/align.test >config.status: creating tests/coords1.test >config.status: creating tests/setup1.test >config.status: creating tests/iit.test >config.status: creating src/config.h >config.status: executing depfiles commands >checking standard compiler and flags to be used... x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 >checking standard linker flags to be used... >checking pthread compiler flags to be used... >checking popcnt flags to be used... -mpopcnt >checking compile level... avx2 >checking AVX2 compiler flags to be used... -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27 ... >make -j16 >Making all in src >make[1]: Entering directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/src' >make all-am >make[2]: Entering directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/src' >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DMAIN=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cpuid-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap-gmap_select.o `test -f 'gmap_select.c' || echo './'`gmap_select.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl-gmapl_select.o `test -f 'gmapl_select.c' || echo './'`gmapl_select.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-md5.o `test -f 'md5.c' || echo './'`md5.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-fopen.o `test -f 'fopen.c' || echo './'`fopen.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-sequence.o `test -f 'sequence.c' || echo './'`sequence.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-genome.o `test -f 'genome.c' || echo './'`genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-chrom.o `test -f 'chrom.c' || echo './'`chrom.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-datadir.o `test -f 'datadir.c' || echo './'`datadir.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o get_genome-get-genome.o `test -f 'get-genome.c' || echo './'`get-genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-md5.o `test -f 'md5.c' || echo './'`md5.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-genome.o `test -f 'genome.c' || echo './'`genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-compress.o `test -f 'compress.c' || echo './'`compress.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-regiondb-write.o `test -f 'regiondb-write.c' || echo './'`regiondb-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-table.o `test -f 'table.c' || echo './'`table.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-tableuint.o `test -f 'tableuint.c' || echo './'`tableuint.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-tableuint8.o `test -f 'tableuint8.c' || echo './'`tableuint8.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-tableint.o `test -f 'tableint.c' || echo './'`tableint.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-chrom.o `test -f 'chrom.c' || echo './'`chrom.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapindex-gmapindex.o `test -f 'gmapindex.c' || echo './'`gmapindex.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-fopen.o `test -f 'fopen.c' || echo './'`fopen.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-datadir.o `test -f 'datadir.c' || echo './'`datadir.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o indexdb_cat-indexdb-cat.o `test -f 'indexdb-cat.c' || echo './'`indexdb-cat.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-iit-write-univ.o `test -f 'iit-write-univ.c' || echo './'`iit-write-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-iit-write.o `test -f 'iit-write.c' || echo './'`iit-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-tableint.o `test -f 'tableint.c' || echo './'`tableint.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-table.o `test -f 'table.c' || echo './'`table.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-chrom.o `test -f 'chrom.c' || echo './'`chrom.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_store-iit_store.o `test -f 'iit_store.c' || echo './'`iit_store.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_get-iit_get.o `test -f 'iit_get.c' || echo './'`iit_get.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o iit_dump-iit_dump.o `test -f 'iit_dump.c' || echo './'`iit_dump.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap-gsnap_select.o `test -f 'gsnap_select.c' || echo './'`gsnap_select.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl-cpuid.o `test -f 'cpuid.c' || echo './'`cpuid.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl-gsnapl_select.o `test -f 'gsnapl_select.c' || echo './'`gsnapl_select.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-compress.o `test -f 'compress.c' || echo './'`compress.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-chrom.o `test -f 'chrom.c' || echo './'`chrom.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-md5.o `test -f 'md5.c' || echo './'`md5.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-genome.o `test -f 'genome.c' || echo './'`genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o snpindex-snpindex.o `test -f 'snpindex.c' || echo './'`snpindex.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-compress.o `test -f 'compress.c' || echo './'`compress.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-regiondb-write.o `test -f 'regiondb-write.c' || echo './'`regiondb-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-cmet.o `test -f 'cmet.c' || echo './'`cmet.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-md5.o `test -f 'md5.c' || echo './'`md5.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-genome.o `test -f 'genome.c' || echo './'`genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o cmetindex-cmetindex.o `test -f 'cmetindex.c' || echo './'`cmetindex.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-compress.o `test -f 'compress.c' || echo './'`compress.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-popcount.o `test -f 'popcount.c' || echo './'`popcount.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-bitpack64-incr.o `test -f 'bitpack64-incr.c' || echo './'`bitpack64-incr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-indexdb-write.o `test -f 'indexdb-write.c' || echo './'`indexdb-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-regiondb-write.o `test -f 'regiondb-write.c' || echo './'`regiondb-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-atoi.o `test -f 'atoi.c' || echo './'`atoi.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-md5.o `test -f 'md5.c' || echo './'`md5.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-fopen.o `test -f 'fopen.c' || echo './'`fopen.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-sequence.o `test -f 'sequence.c' || echo './'`sequence.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-genome.o `test -f 'genome.c' || echo './'`genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o atoiindex-atoiindex.o `test -f 'atoiindex.c' || echo './'`atoiindex.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-bitpack64-write.o `test -f 'bitpack64-write.c' || echo './'`bitpack64-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-datadir.o `test -f 'datadir.c' || echo './'`datadir.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o trindex-trindex.o `test -f 'trindex.c' || echo './'`trindex.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-samheader.o `test -f 'samheader.c' || echo './'`samheader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-samread.o `test -f 'samread.c' || echo './'`samread.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-datadir.o `test -f 'datadir.c' || echo './'`datadir.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o sam_sort-sam_sort.o `test -f 'sam_sort.c' || echo './'`sam_sort.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-md5.o `test -f 'md5.c' || echo './'`md5.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-sequence.o `test -f 'sequence.c' || echo './'`sequence.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-block.o `test -f 'block.c' || echo './'`block.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-chrom.o `test -f 'chrom.c' || echo './'`chrom.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-gregion.o `test -f 'gregion.c' || echo './'`gregion.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-match.o `test -f 'match.c' || echo './'`match.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-stage1.o `test -f 'stage1.c' || echo './'`stage1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-diag.o `test -f 'diag.c' || echo './'`diag.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-cmet.o `test -f 'cmet.c' || echo './'`cmet.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-atoi.o `test -f 'atoi.c' || echo './'`atoi.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-pair.o `test -f 'pair.c' || echo './'`pair.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-stage2.o `test -f 'stage2.c' || echo './'`stage2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-smooth.o `test -f 'smooth.c' || echo './'`smooth.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-translation.o `test -f 'translation.c' || echo './'`translation.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-stage3.o `test -f 'stage3.c' || echo './'`stage3.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-request.o `test -f 'request.c' || echo './'`request.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-result.o `test -f 'result.c' || echo './'`result.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-output.o `test -f 'output.c' || echo './'`output.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-chimera.o `test -f 'chimera.c' || echo './'`chimera.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_nosimd-gmap.o `test -f 'gmap.c' || echo './'`gmap.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-md5.o `test -f 'md5.c' || echo './'`md5.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-sequence.o `test -f 'sequence.c' || echo './'`sequence.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-block.o `test -f 'block.c' || echo './'`block.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-chrom.o `test -f 'chrom.c' || echo './'`chrom.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-gregion.o `test -f 'gregion.c' || echo './'`gregion.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-match.o `test -f 'match.c' || echo './'`match.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-stage1.o `test -f 'stage1.c' || echo './'`stage1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-diag.o `test -f 'diag.c' || echo './'`diag.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-cmet.o `test -f 'cmet.c' || echo './'`cmet.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-atoi.o `test -f 'atoi.c' || echo './'`atoi.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-pair.o `test -f 'pair.c' || echo './'`pair.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-stage2.o `test -f 'stage2.c' || echo './'`stage2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-smooth.o `test -f 'smooth.c' || echo './'`smooth.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-translation.o `test -f 'translation.c' || echo './'`translation.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-stage3.o `test -f 'stage3.c' || echo './'`stage3.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-request.o `test -f 'request.c' || echo './'`request.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-result.o `test -f 'result.c' || echo './'`result.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-output.o `test -f 'output.c' || echo './'`output.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-chimera.o `test -f 'chimera.c' || echo './'`chimera.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_nosimd-gmap.o `test -f 'gmap.c' || echo './'`gmap.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo './'`merge-uint4.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo './'`merge-diagonals-simd-uint4.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-mdprint.o `test -f 'mdprint.c' || echo './'`mdprint.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-cigar.o `test -f 'cigar.c' || echo './'`cigar.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-samprint.o `test -f 'samprint.c' || echo './'`samprint.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-mapq.o `test -f 'mapq.c' || echo './'`mapq.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-shortread.o `test -f 'shortread.c' || echo './'`shortread.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-substring.o `test -f 'substring.c' || echo './'`substring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-junction.o `test -f 'junction.c' || echo './'`junction.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-method.o `test -f 'method.c' || echo './'`method.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-ladder.o `test -f 'ladder.c' || echo './'`ladder.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-concordance.o `test -f 'concordance.c' || echo './'`concordance.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-simplepair.o `test -f 'simplepair.c' || echo './'`simplepair.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo './'`intlistpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-uintlistpool.o `test -f 'uintlistpool.c' || echo './'`uintlistpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-listpool.o `test -f 'listpool.c' || echo './'`listpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo './'`hitlistpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo './'`knownsplicing.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-splice.o `test -f 'splice.c' || echo './'`splice.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-indel.o `test -f 'indel.c' || echo './'`indel.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo './'`univdiagpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-intersect.o `test -f 'intersect.c' || echo './'`intersect.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo './'`kmer-search.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-path-solve.o `test -f 'path-solve.c' || echo './'`path-solve.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-extension-search.o `test -f 'extension-search.c' || echo './'`extension-search.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-segment-search.o `test -f 'segment-search.c' || echo './'`segment-search.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-terminal.o `test -f 'terminal.c' || echo './'`terminal.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-distant-rna.o `test -f 'distant-rna.c' || echo './'`distant-rna.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-distant-dna.o `test -f 'distant-dna.c' || echo './'`distant-dna.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo './'`uint8table_rh.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-request.o `test -f 'request.c' || echo './'`request.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-output.o `test -f 'output.c' || echo './'`output.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_nosimd-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-reader.o `test -f 'reader.c' || echo './'`reader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-compress.o `test -f 'compress.c' || echo './'`compress.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-genome.o `test -f 'genome.c' || echo './'`genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-popcount.o `test -f 'popcount.c' || echo './'`popcount.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo './'`merge-diagonals-heap.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-merge-uint8.o `test -f 'merge-uint8.c' || echo './'`merge-uint8.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo './'`merge-diagonals-simd-uint8.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-merge-uint4.o `test -f 'merge-uint4.c' || echo './'`merge-uint4.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo './'`merge-diagonals-simd-uint4.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-oligo.o `test -f 'oligo.c' || echo './'`oligo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-mdprint.o `test -f 'mdprint.c' || echo './'`mdprint.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-cigar.o `test -f 'cigar.c' || echo './'`cigar.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-samprint.o `test -f 'samprint.c' || echo './'`samprint.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-mapq.o `test -f 'mapq.c' || echo './'`mapq.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-fopen.o `test -f 'fopen.c' || echo './'`fopen.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-shortread.o `test -f 'shortread.c' || echo './'`shortread.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-substring.o `test -f 'substring.c' || echo './'`substring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-junction.o `test -f 'junction.c' || echo './'`junction.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-transcript.o `test -f 'transcript.c' || echo './'`transcript.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-method.o `test -f 'method.c' || echo './'`method.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-ladder.o `test -f 'ladder.c' || echo './'`ladder.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-concordance.o `test -f 'concordance.c' || echo './'`concordance.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-simplepair.o `test -f 'simplepair.c' || echo './'`simplepair.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-maxent.o `test -f 'maxent.c' || echo './'`maxent.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-intlistpool.o `test -f 'intlistpool.c' || echo './'`intlistpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-uint8listpool.o `test -f 'uint8listpool.c' || echo './'`uint8listpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-listpool.o `test -f 'listpool.c' || echo './'`listpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-hitlistpool.o `test -f 'hitlistpool.c' || echo './'`hitlistpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-intron.o `test -f 'intron.c' || echo './'`intron.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-knownsplicing.o `test -f 'knownsplicing.c' || echo './'`knownsplicing.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-splice.o `test -f 'splice.c' || echo './'`splice.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-indel.o `test -f 'indel.c' || echo './'`indel.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-univdiagpool.o `test -f 'univdiagpool.c' || echo './'`univdiagpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-intersect.o `test -f 'intersect.c' || echo './'`intersect.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-intersect-large.o `test -f 'intersect-large.c' || echo './'`intersect-large.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-kmer-search.o `test -f 'kmer-search.c' || echo './'`kmer-search.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-path-solve.o `test -f 'path-solve.c' || echo './'`path-solve.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-extension-search.o `test -f 'extension-search.c' || echo './'`extension-search.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-segment-search.o `test -f 'segment-search.c' || echo './'`segment-search.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-terminal.o `test -f 'terminal.c' || echo './'`terminal.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-distant-rna.o `test -f 'distant-rna.c' || echo './'`distant-rna.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-distant-dna.o `test -f 'distant-dna.c' || echo './'`distant-dna.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-uint8table_rh.o `test -f 'uint8table_rh.c' || echo './'`uint8table_rh.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-request.o `test -f 'request.c' || echo './'`request.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-output.o `test -f 'output.c' || echo './'`output.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-samheader.o `test -f 'samheader.c' || echo './'`samheader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-datadir.o `test -f 'datadir.c' || echo './'`datadir.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_nosimd-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-md5.o `test -f 'md5.c' || echo './'`md5.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-fopen.o `test -f 'fopen.c' || echo './'`fopen.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-sequence.o `test -f 'sequence.c' || echo './'`sequence.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-reader.o `test -f 'reader.c' || echo './'`reader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-compress.o `test -f 'compress.c' || echo './'`compress.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-genome.o `test -f 'genome.c' || echo './'`genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-popcount.o `test -f 'popcount.c' || echo './'`popcount.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-oligo.o `test -f 'oligo.c' || echo './'`oligo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-block.o `test -f 'block.c' || echo './'`block.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-chrom.o `test -f 'chrom.c' || echo './'`chrom.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-gregion.o `test -f 'gregion.c' || echo './'`gregion.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-match.o `test -f 'match.c' || echo './'`match.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-stage1.o `test -f 'stage1.c' || echo './'`stage1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-diag.o `test -f 'diag.c' || echo './'`diag.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-cmet.o `test -f 'cmet.c' || echo './'`cmet.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-atoi.o `test -f 'atoi.c' || echo './'`atoi.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-transcript.o `test -f 'transcript.c' || echo './'`transcript.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-intron.o `test -f 'intron.c' || echo './'`intron.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-maxent.o `test -f 'maxent.c' || echo './'`maxent.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-pair.o `test -f 'pair.c' || echo './'`pair.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-stage2.o `test -f 'stage2.c' || echo './'`stage2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-smooth.o `test -f 'smooth.c' || echo './'`smooth.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-translation.o `test -f 'translation.c' || echo './'`translation.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-stage3.o `test -f 'stage3.c' || echo './'`stage3.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-request.o `test -f 'request.c' || echo './'`request.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-result.o `test -f 'result.c' || echo './'`result.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-output.o `test -f 'output.c' || echo './'`output.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-samheader.o `test -f 'samheader.c' || echo './'`samheader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-chimera.o `test -f 'chimera.c' || echo './'`chimera.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-datadir.o `test -f 'datadir.c' || echo './'`datadir.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmap_avx2-gmap.o `test -f 'gmap.c' || echo './'`gmap.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-md5.o `test -f 'md5.c' || echo './'`md5.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-fopen.o `test -f 'fopen.c' || echo './'`fopen.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-sequence.o `test -f 'sequence.c' || echo './'`sequence.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-reader.o `test -f 'reader.c' || echo './'`reader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-compress.o `test -f 'compress.c' || echo './'`compress.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-compress-write.o `test -f 'compress-write.c' || echo './'`compress-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-genome.o `test -f 'genome.c' || echo './'`genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-popcount.o `test -f 'popcount.c' || echo './'`popcount.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-genome-write.o `test -f 'genome-write.c' || echo './'`genome-write.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-oligo.o `test -f 'oligo.c' || echo './'`oligo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-block.o `test -f 'block.c' || echo './'`block.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-chrom.o `test -f 'chrom.c' || echo './'`chrom.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-segmentpos.o `test -f 'segmentpos.c' || echo './'`segmentpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-gregion.o `test -f 'gregion.c' || echo './'`gregion.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-match.o `test -f 'match.c' || echo './'`match.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-matchpool.o `test -f 'matchpool.c' || echo './'`matchpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-diagnostic.o `test -f 'diagnostic.c' || echo './'`diagnostic.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-stage1.o `test -f 'stage1.c' || echo './'`stage1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-diag.o `test -f 'diag.c' || echo './'`diag.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-diagpool.o `test -f 'diagpool.c' || echo './'`diagpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-cmet.o `test -f 'cmet.c' || echo './'`cmet.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-atoi.o `test -f 'atoi.c' || echo './'`atoi.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-oligoindex_hr.o `test -f 'oligoindex_hr.c' || echo './'`oligoindex_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-transcript.o `test -f 'transcript.c' || echo './'`transcript.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-intron.o `test -f 'intron.c' || echo './'`intron.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-maxent.o `test -f 'maxent.c' || echo './'`maxent.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-pair.o `test -f 'pair.c' || echo './'`pair.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-pairpool.o `test -f 'pairpool.c' || echo './'`pairpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-cellpool.o `test -f 'cellpool.c' || echo './'`cellpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-stage2.o `test -f 'stage2.c' || echo './'`stage2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-doublelist.o `test -f 'doublelist.c' || echo './'`doublelist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-smooth.o `test -f 'smooth.c' || echo './'`smooth.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-splicestringpool.o `test -f 'splicestringpool.c' || echo './'`splicestringpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-splicetrie_build.o `test -f 'splicetrie_build.c' || echo './'`splicetrie_build.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-splicetrie.o `test -f 'splicetrie.c' || echo './'`splicetrie.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-boyer-moore.o `test -f 'boyer-moore.c' || echo './'`boyer-moore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-dynprog.o `test -f 'dynprog.c' || echo './'`dynprog.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-dynprog_simd.o `test -f 'dynprog_simd.c' || echo './'`dynprog_simd.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-dynprog_single.o `test -f 'dynprog_single.c' || echo './'`dynprog_single.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-dynprog_genome.o `test -f 'dynprog_genome.c' || echo './'`dynprog_genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-dynprog_cdna.o `test -f 'dynprog_cdna.c' || echo './'`dynprog_cdna.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-dynprog_end.o `test -f 'dynprog_end.c' || echo './'`dynprog_end.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-translation.o `test -f 'translation.c' || echo './'`translation.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-pbinom.o `test -f 'pbinom.c' || echo './'`pbinom.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-changepoint.o `test -f 'changepoint.c' || echo './'`changepoint.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-stage3.o `test -f 'stage3.c' || echo './'`stage3.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-request.o `test -f 'request.c' || echo './'`request.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-result.o `test -f 'result.c' || echo './'`result.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-output.o `test -f 'output.c' || echo './'`output.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-samheader.o `test -f 'samheader.c' || echo './'`samheader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-chimera.o `test -f 'chimera.c' || echo './'`chimera.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-datadir.o `test -f 'datadir.c' || echo './'`datadir.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gmapl_avx2-gmap.o `test -f 'gmap.c' || echo './'`gmap.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-reader.o `test -f 'reader.c' || echo './'`reader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-compress.o `test -f 'compress.c' || echo './'`compress.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-genome.o `test -f 'genome.c' || echo './'`genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-popcount.o `test -f 'popcount.c' || echo './'`popcount.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-merge-uint4.o `test -f 'merge-uint4.c' || echo './'`merge-uint4.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo './'`merge-diagonals-simd-uint4.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-oligo.o `test -f 'oligo.c' || echo './'`oligo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-mdprint.o `test -f 'mdprint.c' || echo './'`mdprint.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-cigar.o `test -f 'cigar.c' || echo './'`cigar.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-samprint.o `test -f 'samprint.c' || echo './'`samprint.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-mapq.o `test -f 'mapq.c' || echo './'`mapq.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-fopen.o `test -f 'fopen.c' || echo './'`fopen.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-shortread.o `test -f 'shortread.c' || echo './'`shortread.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-substring.o `test -f 'substring.c' || echo './'`substring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-junction.o `test -f 'junction.c' || echo './'`junction.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-transcript.o `test -f 'transcript.c' || echo './'`transcript.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-method.o `test -f 'method.c' || echo './'`method.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-ladder.o `test -f 'ladder.c' || echo './'`ladder.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-concordance.o `test -f 'concordance.c' || echo './'`concordance.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-simplepair.o `test -f 'simplepair.c' || echo './'`simplepair.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-maxent.o `test -f 'maxent.c' || echo './'`maxent.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-intlistpool.o `test -f 'intlistpool.c' || echo './'`intlistpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-uintlistpool.o `test -f 'uintlistpool.c' || echo './'`uintlistpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-listpool.o `test -f 'listpool.c' || echo './'`listpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-hitlistpool.o `test -f 'hitlistpool.c' || echo './'`hitlistpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-intron.o `test -f 'intron.c' || echo './'`intron.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-knownsplicing.o `test -f 'knownsplicing.c' || echo './'`knownsplicing.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-splice.o `test -f 'splice.c' || echo './'`splice.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-indel.o `test -f 'indel.c' || echo './'`indel.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-univdiagpool.o `test -f 'univdiagpool.c' || echo './'`univdiagpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-intersect.o `test -f 'intersect.c' || echo './'`intersect.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-kmer-search.o `test -f 'kmer-search.c' || echo './'`kmer-search.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-path-solve.o `test -f 'path-solve.c' || echo './'`path-solve.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-extension-search.o `test -f 'extension-search.c' || echo './'`extension-search.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-segment-search.o `test -f 'segment-search.c' || echo './'`segment-search.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-terminal.o `test -f 'terminal.c' || echo './'`terminal.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-distant-rna.o `test -f 'distant-rna.c' || echo './'`distant-rna.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-distant-dna.o `test -f 'distant-dna.c' || echo './'`distant-dna.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-uint8table_rh.o `test -f 'uint8table_rh.c' || echo './'`uint8table_rh.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-uinttable_rh.o `test -f 'uinttable_rh.c' || echo './'`uinttable_rh.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-request.o `test -f 'request.c' || echo './'`request.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-output.o `test -f 'output.c' || echo './'`output.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-samheader.o `test -f 'samheader.c' || echo './'`samheader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-datadir.o `test -f 'datadir.c' || echo './'`datadir.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnap_avx2-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-except.o `test -f 'except.c' || echo './'`except.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-assert.o `test -f 'assert.c' || echo './'`assert.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-mem.o `test -f 'mem.c' || echo './'`mem.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-intlist.o `test -f 'intlist.c' || echo './'`intlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-uintlist.o `test -f 'uintlist.c' || echo './'`uintlist.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-uint8list.o `test -f 'uint8list.c' || echo './'`uint8list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-list.o `test -f 'list.c' || echo './'`list.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-littleendian.o `test -f 'littleendian.c' || echo './'`littleendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-bigendian.o `test -f 'bigendian.c' || echo './'`bigendian.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-univinterval.o `test -f 'univinterval.c' || echo './'`univinterval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-interval.o `test -f 'interval.c' || echo './'`interval.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-stopwatch.o `test -f 'stopwatch.c' || echo './'`stopwatch.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-semaphore.o `test -f 'semaphore.c' || echo './'`semaphore.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-access.o `test -f 'access.c' || echo './'`access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-filestring.o `test -f 'filestring.c' || echo './'`filestring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-iit-read-univ.o `test -f 'iit-read-univ.c' || echo './'`iit-read-univ.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-iit-read.o `test -f 'iit-read.c' || echo './'`iit-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-bzip2.o `test -f 'bzip2.c' || echo './'`bzip2.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-reader.o `test -f 'reader.c' || echo './'`reader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-genomicpos.o `test -f 'genomicpos.c' || echo './'`genomicpos.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-compress.o `test -f 'compress.c' || echo './'`compress.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-genome.o `test -f 'genome.c' || echo './'`genome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-transcriptome.o `test -f 'transcriptome.c' || echo './'`transcriptome.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-popcount.o `test -f 'popcount.c' || echo './'`popcount.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-genome128_hr.o `test -f 'genome128_hr.c' || echo './'`genome128_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-genome128_consec.o `test -f 'genome128_consec.c' || echo './'`genome128_consec.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-genome_sites.o `test -f 'genome_sites.c' || echo './'`genome_sites.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-bitpack64-read.o `test -f 'bitpack64-read.c' || echo './'`bitpack64-read.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-bitpack64-readtwo.o `test -f 'bitpack64-readtwo.c' || echo './'`bitpack64-readtwo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-merge-diagonals-heap.o `test -f 'merge-diagonals-heap.c' || echo './'`merge-diagonals-heap.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-merge-uint8.o `test -f 'merge-uint8.c' || echo './'`merge-uint8.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-merge-diagonals-simd-uint8.o `test -f 'merge-diagonals-simd-uint8.c' || echo './'`merge-diagonals-simd-uint8.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-merge-uint4.o `test -f 'merge-uint4.c' || echo './'`merge-uint4.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-merge-diagonals-simd-uint4.o `test -f 'merge-diagonals-simd-uint4.c' || echo './'`merge-diagonals-simd-uint4.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-indexdb.o `test -f 'indexdb.c' || echo './'`indexdb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-regiondb.o `test -f 'regiondb.c' || echo './'`regiondb.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-oligo.o `test -f 'oligo.c' || echo './'`oligo.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-chrnum.o `test -f 'chrnum.c' || echo './'`chrnum.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-maxent_hr.o `test -f 'maxent_hr.c' || echo './'`maxent_hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-mdprint.o `test -f 'mdprint.c' || echo './'`mdprint.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-cigar.o `test -f 'cigar.c' || echo './'`cigar.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-samprint.o `test -f 'samprint.c' || echo './'`samprint.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-mapq.o `test -f 'mapq.c' || echo './'`mapq.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-fopen.o `test -f 'fopen.c' || echo './'`fopen.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-shortread.o `test -f 'shortread.c' || echo './'`shortread.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-substring.o `test -f 'substring.c' || echo './'`substring.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-junction.o `test -f 'junction.c' || echo './'`junction.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-transcript.o `test -f 'transcript.c' || echo './'`transcript.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-method.o `test -f 'method.c' || echo './'`method.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-stage3hr.o `test -f 'stage3hr.c' || echo './'`stage3hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-ladder.o `test -f 'ladder.c' || echo './'`ladder.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-concordance.o `test -f 'concordance.c' || echo './'`concordance.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-simplepair.o `test -f 'simplepair.c' || echo './'`simplepair.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-maxent.o `test -f 'maxent.c' || echo './'`maxent.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-orderstat.o `test -f 'orderstat.c' || echo './'`orderstat.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-intlistpool.o `test -f 'intlistpool.c' || echo './'`intlistpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-uint8listpool.o `test -f 'uint8listpool.c' || echo './'`uint8listpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-listpool.o `test -f 'listpool.c' || echo './'`listpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-hitlistpool.o `test -f 'hitlistpool.c' || echo './'`hitlistpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-intron.o `test -f 'intron.c' || echo './'`intron.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-gbuffer.o `test -f 'gbuffer.c' || echo './'`gbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-knownsplicing.o `test -f 'knownsplicing.c' || echo './'`knownsplicing.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-splice.o `test -f 'splice.c' || echo './'`splice.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-indel.o `test -f 'indel.c' || echo './'`indel.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-bitpack64-access.o `test -f 'bitpack64-access.c' || echo './'`bitpack64-access.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-univdiag.o `test -f 'univdiag.c' || echo './'`univdiag.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-univdiagpool.o `test -f 'univdiagpool.c' || echo './'`univdiagpool.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-sedgesort.o `test -f 'sedgesort.c' || echo './'`sedgesort.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-intersect.o `test -f 'intersect.c' || echo './'`intersect.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-intersect-large.o `test -f 'intersect-large.c' || echo './'`intersect-large.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-kmer-search.o `test -f 'kmer-search.c' || echo './'`kmer-search.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-path-solve.o `test -f 'path-solve.c' || echo './'`path-solve.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-extension-search.o `test -f 'extension-search.c' || echo './'`extension-search.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-segment-search.o `test -f 'segment-search.c' || echo './'`segment-search.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-terminal.o `test -f 'terminal.c' || echo './'`terminal.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-distant-rna.o `test -f 'distant-rna.c' || echo './'`distant-rna.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-distant-dna.o `test -f 'distant-dna.c' || echo './'`distant-dna.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-uint8table_rh.o `test -f 'uint8table_rh.c' || echo './'`uint8table_rh.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-stage1hr.o `test -f 'stage1hr.c' || echo './'`stage1hr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-request.o `test -f 'request.c' || echo './'`request.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-resulthr.o `test -f 'resulthr.c' || echo './'`resulthr.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-output.o `test -f 'output.c' || echo './'`output.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-inbuffer.o `test -f 'inbuffer.c' || echo './'`inbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-samheader.o `test -f 'samheader.c' || echo './'`samheader.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-outbuffer.o `test -f 'outbuffer.c' || echo './'`outbuffer.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-datadir.o `test -f 'datadir.c' || echo './'`datadir.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-parserange.o `test -f 'parserange.c' || echo './'`parserange.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-getline.o `test -f 'getline.c' || echo './'`getline.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-getopt.o `test -f 'getopt.c' || echo './'`getopt.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-getopt1.o `test -f 'getopt1.c' || echo './'`getopt1.c >x86_64-gentoo-linux-musl-gcc -DHAVE_CONFIG_H -I. -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -c -o gsnapl_avx2-gsnap.o `test -f 'gsnap.c' || echo './'`gsnap.c >x86_64-gentoo-linux-musl-gcc -DMAIN=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o cpuid cpuid-cpuid.o -lm >x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o gmap gmap-cpuid.o gmap-gmap_select.o -lm >x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o gmapl gmapl-cpuid.o gmapl-gmapl_select.o -lm >x86_64-gentoo-linux-musl-gcc -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o get-genome get_genome-except.o get_genome-assert.o get_genome-mem.o get_genome-intlist.o get_genome-list.o get_genome-littleendian.o get_genome-bigendian.o get_genome-univinterval.o get_genome-interval.o get_genome-uintlist.o get_genome-stopwatch.o get_genome-semaphore.o get_genome-access.o get_genome-filestring.o get_genome-iit-read-univ.o get_genome-iit-read.o get_genome-md5.o get_genome-bzip2.o get_genome-fopen.o get_genome-sequence.o get_genome-genome.o get_genome-genomicpos.o get_genome-chrom.o get_genome-chrnum.o get_genome-datadir.o get_genome-parserange.o get_genome-getline.o get_genome-getopt.o get_genome-getopt1.o get_genome-get-genome.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o gmapindex gmapindex-except.o gmapindex-assert.o gmapindex-mem.o gmapindex-intlist.o gmapindex-list.o gmapindex-littleendian.o gmapindex-bigendian.o gmapindex-univinterval.o gmapindex-interval.o gmapindex-uintlist.o gmapindex-stopwatch.o gmapindex-semaphore.o gmapindex-access.o gmapindex-filestring.o gmapindex-iit-read-univ.o gmapindex-iit-write-univ.o gmapindex-iit-read.o gmapindex-md5.o gmapindex-bzip2.o gmapindex-fopen.o gmapindex-sequence.o gmapindex-genome.o gmapindex-genomicpos.o gmapindex-compress-write.o gmapindex-genome-write.o gmapindex-compress.o gmapindex-popcount.o gmapindex-genome128_hr.o gmapindex-genome128_consec.o gmapindex-bitpack64-read.o gmapindex-bitpack64-readtwo.o gmapindex-bitpack64-access.o gmapindex-bitpack64-incr.o gmapindex-bitpack64-write.o gmapindex-indexdb.o gmapindex-indexdb-write.o gmapindex-regiondb.o gmapindex-regiondb-write.o gmapindex-table.o gmapindex-tableuint.o gmapindex-tableuint8.o gmapindex-tableint.o gmapindex-chrom.o gmapindex-segmentpos.o gmapindex-uint8list.o gmapindex-parserange.o gmapindex-getline.o gmapindex-gmapindex.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o indexdb_cat indexdb_cat-except.o indexdb_cat-assert.o indexdb_cat-mem.o indexdb_cat-littleendian.o indexdb_cat-bigendian.o indexdb_cat-genomicpos.o indexdb_cat-stopwatch.o indexdb_cat-semaphore.o indexdb_cat-access.o indexdb_cat-univinterval.o indexdb_cat-interval.o indexdb_cat-uintlist.o indexdb_cat-intlist.o indexdb_cat-list.o indexdb_cat-filestring.o indexdb_cat-iit-read-univ.o indexdb_cat-iit-read.o indexdb_cat-bitpack64-read.o indexdb_cat-bitpack64-readtwo.o indexdb_cat-bitpack64-access.o indexdb_cat-bitpack64-incr.o indexdb_cat-bitpack64-write.o indexdb_cat-indexdb.o indexdb_cat-indexdb-write.o indexdb_cat-compress-write.o indexdb_cat-bzip2.o indexdb_cat-fopen.o indexdb_cat-datadir.o indexdb_cat-parserange.o indexdb_cat-getline.o indexdb_cat-getopt.o indexdb_cat-getopt1.o indexdb_cat-indexdb-cat.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o iit_store iit_store-except.o iit_store-assert.o iit_store-mem.o iit_store-intlist.o iit_store-list.o iit_store-littleendian.o iit_store-bigendian.o iit_store-univinterval.o iit_store-interval.o iit_store-uintlist.o iit_store-stopwatch.o iit_store-semaphore.o iit_store-access.o iit_store-doublelist.o iit_store-iit-write-univ.o iit_store-iit-write.o iit_store-tableint.o iit_store-table.o iit_store-chrom.o iit_store-bzip2.o iit_store-getline.o iit_store-getopt.o iit_store-getopt1.o iit_store-iit_store.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o iit_get iit_get-except.o iit_get-assert.o iit_get-mem.o iit_get-intlist.o iit_get-list.o iit_get-littleendian.o iit_get-bigendian.o iit_get-univinterval.o iit_get-interval.o iit_get-uintlist.o iit_get-stopwatch.o iit_get-semaphore.o iit_get-access.o iit_get-filestring.o iit_get-iit-read-univ.o iit_get-iit-read.o iit_get-parserange.o iit_get-bzip2.o iit_get-getline.o iit_get-getopt.o iit_get-getopt1.o iit_get-iit_get.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o iit_dump iit_dump-except.o iit_dump-assert.o iit_dump-mem.o iit_dump-littleendian.o iit_dump-bigendian.o iit_dump-intlist.o iit_dump-list.o iit_dump-univinterval.o iit_dump-interval.o iit_dump-uintlist.o iit_dump-stopwatch.o iit_dump-semaphore.o iit_dump-access.o iit_dump-filestring.o iit_dump-iit-read-univ.o iit_dump-iit-read.o iit_dump-parserange.o iit_dump-getopt.o iit_dump-getopt1.o iit_dump-iit_dump.o -lm >x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o gsnap gsnap-cpuid.o gsnap-gsnap_select.o -lm >x86_64-gentoo-linux-musl-gcc -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o gsnapl gsnapl-cpuid.o gsnapl-gsnapl_select.o -lm >x86_64-gentoo-linux-musl-gcc -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o snpindex snpindex-except.o snpindex-assert.o snpindex-mem.o snpindex-intlist.o snpindex-list.o snpindex-littleendian.o snpindex-bigendian.o snpindex-univinterval.o snpindex-interval.o snpindex-uintlist.o snpindex-stopwatch.o snpindex-semaphore.o snpindex-access.o snpindex-filestring.o snpindex-iit-read-univ.o snpindex-iit-read.o snpindex-genomicpos.o snpindex-compress.o snpindex-compress-write.o snpindex-popcount.o snpindex-genome128_hr.o snpindex-genome128_consec.o snpindex-bitpack64-read.o snpindex-bitpack64-readtwo.o snpindex-bitpack64-access.o snpindex-bitpack64-incr.o snpindex-bitpack64-write.o snpindex-indexdb.o snpindex-indexdb-write.o snpindex-chrom.o snpindex-md5.o snpindex-bzip2.o snpindex-fopen.o snpindex-sequence.o snpindex-genome.o snpindex-datadir.o snpindex-parserange.o snpindex-getline.o snpindex-getopt.o snpindex-getopt1.o snpindex-snpindex.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o cmetindex cmetindex-except.o cmetindex-assert.o cmetindex-mem.o cmetindex-littleendian.o cmetindex-bigendian.o cmetindex-genomicpos.o cmetindex-stopwatch.o cmetindex-semaphore.o cmetindex-access.o cmetindex-univinterval.o cmetindex-interval.o cmetindex-filestring.o cmetindex-iit-read-univ.o cmetindex-iit-read.o cmetindex-compress.o cmetindex-compress-write.o cmetindex-popcount.o cmetindex-genome128_hr.o cmetindex-genome128_consec.o cmetindex-bitpack64-read.o cmetindex-bitpack64-readtwo.o cmetindex-bitpack64-access.o cmetindex-bitpack64-incr.o cmetindex-bitpack64-write.o cmetindex-indexdb.o cmetindex-indexdb-write.o cmetindex-regiondb-write.o cmetindex-cmet.o cmetindex-md5.o cmetindex-bzip2.o cmetindex-fopen.o cmetindex-sequence.o cmetindex-genome.o cmetindex-uintlist.o cmetindex-intlist.o cmetindex-uint8list.o cmetindex-list.o cmetindex-datadir.o cmetindex-parserange.o cmetindex-getline.o cmetindex-getopt.o cmetindex-getopt1.o cmetindex-cmetindex.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o atoiindex atoiindex-except.o atoiindex-assert.o atoiindex-mem.o atoiindex-littleendian.o atoiindex-bigendian.o atoiindex-genomicpos.o atoiindex-stopwatch.o atoiindex-semaphore.o atoiindex-access.o atoiindex-univinterval.o atoiindex-interval.o atoiindex-filestring.o atoiindex-iit-read-univ.o atoiindex-iit-read.o atoiindex-compress.o atoiindex-compress-write.o atoiindex-popcount.o atoiindex-genome128_hr.o atoiindex-genome128_consec.o atoiindex-bitpack64-read.o atoiindex-bitpack64-readtwo.o atoiindex-bitpack64-access.o atoiindex-bitpack64-incr.o atoiindex-bitpack64-write.o atoiindex-indexdb.o atoiindex-indexdb-write.o atoiindex-regiondb-write.o atoiindex-atoi.o atoiindex-md5.o atoiindex-bzip2.o atoiindex-fopen.o atoiindex-sequence.o atoiindex-genome.o atoiindex-uintlist.o atoiindex-intlist.o atoiindex-uint8list.o atoiindex-list.o atoiindex-datadir.o atoiindex-parserange.o atoiindex-getline.o atoiindex-getopt.o atoiindex-getopt1.o atoiindex-atoiindex.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o trindex trindex-except.o trindex-assert.o trindex-mem.o trindex-littleendian.o trindex-bigendian.o trindex-genomicpos.o trindex-stopwatch.o trindex-semaphore.o trindex-access.o trindex-interval.o trindex-filestring.o trindex-iit-read.o trindex-parserange.o trindex-univinterval.o trindex-iit-read-univ.o trindex-bitpack64-access.o trindex-bitpack64-write.o trindex-uintlist.o trindex-intlist.o trindex-list.o trindex-datadir.o trindex-bzip2.o trindex-getline.o trindex-getopt.o trindex-getopt1.o trindex-trindex.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DGMAPDB=\"/usr/share\" -DUTILITYP=1 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o sam_sort sam_sort-except.o sam_sort-assert.o sam_sort-mem.o sam_sort-littleendian.o sam_sort-bigendian.o sam_sort-intlist.o sam_sort-list.o sam_sort-stopwatch.o sam_sort-semaphore.o sam_sort-access.o sam_sort-univinterval.o sam_sort-interval.o sam_sort-uintlist.o sam_sort-filestring.o sam_sort-parserange.o sam_sort-iit-read-univ.o sam_sort-iit-read.o sam_sort-samheader.o sam_sort-samread.o sam_sort-bzip2.o sam_sort-getline.o sam_sort-datadir.o sam_sort-getopt.o sam_sort-getopt1.o sam_sort-sam_sort.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o gmap.nosimd gmap_nosimd-except.o gmap_nosimd-assert.o gmap_nosimd-mem.o gmap_nosimd-intlist.o gmap_nosimd-uintlist.o gmap_nosimd-list.o gmap_nosimd-littleendian.o gmap_nosimd-bigendian.o gmap_nosimd-univinterval.o gmap_nosimd-interval.o gmap_nosimd-stopwatch.o gmap_nosimd-semaphore.o gmap_nosimd-access.o gmap_nosimd-filestring.o gmap_nosimd-iit-read-univ.o gmap_nosimd-iit-read.o gmap_nosimd-md5.o gmap_nosimd-bzip2.o gmap_nosimd-fopen.o gmap_nosimd-sequence.o gmap_nosimd-reader.o gmap_nosimd-genomicpos.o gmap_nosimd-compress.o gmap_nosimd-compress-write.o gmap_nosimd-gbuffer.o gmap_nosimd-genome.o gmap_nosimd-popcount.o gmap_nosimd-genome_sites.o gmap_nosimd-genome-write.o gmap_nosimd-bitpack64-read.o gmap_nosimd-bitpack64-readtwo.o gmap_nosimd-indexdb.o gmap_nosimd-oligo.o gmap_nosimd-block.o gmap_nosimd-chrom.o gmap_nosimd-segmentpos.o gmap_nosimd-chrnum.o gmap_nosimd-uinttable_rh.o gmap_nosimd-gregion.o gmap_nosimd-match.o gmap_nosimd-matchpool.o gmap_nosimd-diagnostic.o gmap_nosimd-stage1.o gmap_nosimd-diag.o gmap_nosimd-diagpool.o gmap_nosimd-cmet.o gmap_nosimd-atoi.o gmap_nosimd-orderstat.o gmap_nosimd-oligoindex_hr.o gmap_nosimd-transcript.o gmap_nosimd-intron.o gmap_nosimd-maxent.o gmap_nosimd-maxent_hr.o gmap_nosimd-pair.o gmap_nosimd-pairpool.o gmap_nosimd-cellpool.o gmap_nosimd-stage2.o gmap_nosimd-doublelist.o gmap_nosimd-smooth.o gmap_nosimd-splicestringpool.o gmap_nosimd-splicetrie_build.o gmap_nosimd-splicetrie.o gmap_nosimd-boyer-moore.o gmap_nosimd-dynprog.o gmap_nosimd-dynprog_simd.o gmap_nosimd-dynprog_single.o gmap_nosimd-dynprog_genome.o gmap_nosimd-dynprog_cdna.o gmap_nosimd-dynprog_end.o gmap_nosimd-translation.o gmap_nosimd-pbinom.o gmap_nosimd-changepoint.o gmap_nosimd-stage3.o gmap_nosimd-request.o gmap_nosimd-result.o gmap_nosimd-output.o gmap_nosimd-inbuffer.o gmap_nosimd-samheader.o gmap_nosimd-outbuffer.o gmap_nosimd-chimera.o gmap_nosimd-datadir.o gmap_nosimd-parserange.o gmap_nosimd-getline.o gmap_nosimd-getopt.o gmap_nosimd-getopt1.o gmap_nosimd-gmap.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o gmapl.nosimd gmapl_nosimd-except.o gmapl_nosimd-assert.o gmapl_nosimd-mem.o gmapl_nosimd-intlist.o gmapl_nosimd-uintlist.o gmapl_nosimd-uint8list.o gmapl_nosimd-list.o gmapl_nosimd-littleendian.o gmapl_nosimd-bigendian.o gmapl_nosimd-univinterval.o gmapl_nosimd-interval.o gmapl_nosimd-stopwatch.o gmapl_nosimd-semaphore.o gmapl_nosimd-access.o gmapl_nosimd-filestring.o gmapl_nosimd-iit-read-univ.o gmapl_nosimd-iit-read.o gmapl_nosimd-md5.o gmapl_nosimd-bzip2.o gmapl_nosimd-fopen.o gmapl_nosimd-sequence.o gmapl_nosimd-reader.o gmapl_nosimd-genomicpos.o gmapl_nosimd-compress.o gmapl_nosimd-compress-write.o gmapl_nosimd-gbuffer.o gmapl_nosimd-genome.o gmapl_nosimd-popcount.o gmapl_nosimd-genome_sites.o gmapl_nosimd-genome-write.o gmapl_nosimd-bitpack64-read.o gmapl_nosimd-bitpack64-readtwo.o gmapl_nosimd-indexdb.o gmapl_nosimd-oligo.o gmapl_nosimd-block.o gmapl_nosimd-chrom.o gmapl_nosimd-segmentpos.o gmapl_nosimd-chrnum.o gmapl_nosimd-uinttable_rh.o gmapl_nosimd-gregion.o gmapl_nosimd-match.o gmapl_nosimd-matchpool.o gmapl_nosimd-diagnostic.o gmapl_nosimd-stage1.o gmapl_nosimd-diag.o gmapl_nosimd-diagpool.o gmapl_nosimd-cmet.o gmapl_nosimd-atoi.o gmapl_nosimd-orderstat.o gmapl_nosimd-oligoindex_hr.o gmapl_nosimd-transcript.o gmapl_nosimd-intron.o gmapl_nosimd-maxent.o gmapl_nosimd-maxent_hr.o gmapl_nosimd-pair.o gmapl_nosimd-pairpool.o gmapl_nosimd-cellpool.o gmapl_nosimd-stage2.o gmapl_nosimd-doublelist.o gmapl_nosimd-smooth.o gmapl_nosimd-splicestringpool.o gmapl_nosimd-splicetrie_build.o gmapl_nosimd-splicetrie.o gmapl_nosimd-boyer-moore.o gmapl_nosimd-dynprog.o gmapl_nosimd-dynprog_simd.o gmapl_nosimd-dynprog_single.o gmapl_nosimd-dynprog_genome.o gmapl_nosimd-dynprog_cdna.o gmapl_nosimd-dynprog_end.o gmapl_nosimd-translation.o gmapl_nosimd-pbinom.o gmapl_nosimd-changepoint.o gmapl_nosimd-stage3.o gmapl_nosimd-request.o gmapl_nosimd-result.o gmapl_nosimd-output.o gmapl_nosimd-inbuffer.o gmapl_nosimd-samheader.o gmapl_nosimd-outbuffer.o gmapl_nosimd-chimera.o gmapl_nosimd-datadir.o gmapl_nosimd-parserange.o gmapl_nosimd-getline.o gmapl_nosimd-getopt.o gmapl_nosimd-getopt1.o gmapl_nosimd-gmap.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o gsnap.nosimd gsnap_nosimd-except.o gsnap_nosimd-assert.o gsnap_nosimd-mem.o gsnap_nosimd-intlist.o gsnap_nosimd-uintlist.o gsnap_nosimd-list.o gsnap_nosimd-littleendian.o gsnap_nosimd-bigendian.o gsnap_nosimd-univinterval.o gsnap_nosimd-interval.o gsnap_nosimd-stopwatch.o gsnap_nosimd-semaphore.o gsnap_nosimd-access.o gsnap_nosimd-filestring.o gsnap_nosimd-iit-read-univ.o gsnap_nosimd-iit-read.o gsnap_nosimd-bzip2.o gsnap_nosimd-reader.o gsnap_nosimd-genomicpos.o gsnap_nosimd-compress.o gsnap_nosimd-genome.o gsnap_nosimd-transcriptome.o gsnap_nosimd-popcount.o gsnap_nosimd-genome128_hr.o gsnap_nosimd-genome128_consec.o gsnap_nosimd-genome_sites.o gsnap_nosimd-bitpack64-read.o gsnap_nosimd-bitpack64-readtwo.o gsnap_nosimd-merge-uint4.o gsnap_nosimd-merge-diagonals-simd-uint4.o gsnap_nosimd-indexdb.o gsnap_nosimd-regiondb.o gsnap_nosimd-oligo.o gsnap_nosimd-chrnum.o gsnap_nosimd-maxent_hr.o gsnap_nosimd-mdprint.o gsnap_nosimd-cigar.o gsnap_nosimd-samprint.o gsnap_nosimd-mapq.o gsnap_nosimd-fopen.o gsnap_nosimd-shortread.o gsnap_nosimd-substring.o gsnap_nosimd-junction.o gsnap_nosimd-transcript.o gsnap_nosimd-method.o gsnap_nosimd-stage3hr.o gsnap_nosimd-ladder.o gsnap_nosimd-concordance.o gsnap_nosimd-simplepair.o gsnap_nosimd-maxent.o gsnap_nosimd-orderstat.o gsnap_nosimd-intlistpool.o gsnap_nosimd-uintlistpool.o gsnap_nosimd-listpool.o gsnap_nosimd-hitlistpool.o gsnap_nosimd-intron.o gsnap_nosimd-gbuffer.o gsnap_nosimd-knownsplicing.o gsnap_nosimd-splice.o gsnap_nosimd-indel.o gsnap_nosimd-bitpack64-access.o gsnap_nosimd-univdiag.o gsnap_nosimd-univdiagpool.o gsnap_nosimd-sedgesort.o gsnap_nosimd-intersect.o gsnap_nosimd-kmer-search.o gsnap_nosimd-path-solve.o gsnap_nosimd-extension-search.o gsnap_nosimd-segment-search.o gsnap_nosimd-terminal.o gsnap_nosimd-distant-rna.o gsnap_nosimd-distant-dna.o gsnap_nosimd-uint8table_rh.o gsnap_nosimd-uinttable_rh.o gsnap_nosimd-stage1hr.o gsnap_nosimd-request.o gsnap_nosimd-resulthr.o gsnap_nosimd-output.o gsnap_nosimd-inbuffer.o gsnap_nosimd-samheader.o gsnap_nosimd-outbuffer.o gsnap_nosimd-datadir.o gsnap_nosimd-parserange.o gsnap_nosimd-getline.o gsnap_nosimd-getopt.o gsnap_nosimd-getopt1.o gsnap_nosimd-gsnap.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o gsnapl.nosimd gsnapl_nosimd-except.o gsnapl_nosimd-assert.o gsnapl_nosimd-mem.o gsnapl_nosimd-intlist.o gsnapl_nosimd-uintlist.o gsnapl_nosimd-uint8list.o gsnapl_nosimd-list.o gsnapl_nosimd-littleendian.o gsnapl_nosimd-bigendian.o gsnapl_nosimd-univinterval.o gsnapl_nosimd-interval.o gsnapl_nosimd-stopwatch.o gsnapl_nosimd-semaphore.o gsnapl_nosimd-access.o gsnapl_nosimd-filestring.o gsnapl_nosimd-iit-read-univ.o gsnapl_nosimd-iit-read.o gsnapl_nosimd-bzip2.o gsnapl_nosimd-reader.o gsnapl_nosimd-genomicpos.o gsnapl_nosimd-compress.o gsnapl_nosimd-genome.o gsnapl_nosimd-transcriptome.o gsnapl_nosimd-popcount.o gsnapl_nosimd-genome128_hr.o gsnapl_nosimd-genome128_consec.o gsnapl_nosimd-genome_sites.o gsnapl_nosimd-bitpack64-read.o gsnapl_nosimd-bitpack64-readtwo.o gsnapl_nosimd-merge-diagonals-heap.o gsnapl_nosimd-merge-uint8.o gsnapl_nosimd-merge-diagonals-simd-uint8.o gsnapl_nosimd-merge-uint4.o gsnapl_nosimd-merge-diagonals-simd-uint4.o gsnapl_nosimd-indexdb.o gsnapl_nosimd-regiondb.o gsnapl_nosimd-oligo.o gsnapl_nosimd-chrnum.o gsnapl_nosimd-maxent_hr.o gsnapl_nosimd-mdprint.o gsnapl_nosimd-cigar.o gsnapl_nosimd-samprint.o gsnapl_nosimd-mapq.o gsnapl_nosimd-fopen.o gsnapl_nosimd-shortread.o gsnapl_nosimd-substring.o gsnapl_nosimd-junction.o gsnapl_nosimd-transcript.o gsnapl_nosimd-method.o gsnapl_nosimd-stage3hr.o gsnapl_nosimd-ladder.o gsnapl_nosimd-concordance.o gsnapl_nosimd-simplepair.o gsnapl_nosimd-maxent.o gsnapl_nosimd-orderstat.o gsnapl_nosimd-intlistpool.o gsnapl_nosimd-uint8listpool.o gsnapl_nosimd-listpool.o gsnapl_nosimd-hitlistpool.o gsnapl_nosimd-intron.o gsnapl_nosimd-gbuffer.o gsnapl_nosimd-knownsplicing.o gsnapl_nosimd-splice.o gsnapl_nosimd-indel.o gsnapl_nosimd-bitpack64-access.o gsnapl_nosimd-univdiag.o gsnapl_nosimd-univdiagpool.o gsnapl_nosimd-sedgesort.o gsnapl_nosimd-intersect.o gsnapl_nosimd-intersect-large.o gsnapl_nosimd-kmer-search.o gsnapl_nosimd-path-solve.o gsnapl_nosimd-extension-search.o gsnapl_nosimd-segment-search.o gsnapl_nosimd-terminal.o gsnapl_nosimd-distant-rna.o gsnapl_nosimd-distant-dna.o gsnapl_nosimd-uint8table_rh.o gsnapl_nosimd-stage1hr.o gsnapl_nosimd-request.o gsnapl_nosimd-resulthr.o gsnapl_nosimd-output.o gsnapl_nosimd-inbuffer.o gsnapl_nosimd-samheader.o gsnapl_nosimd-outbuffer.o gsnapl_nosimd-datadir.o gsnapl_nosimd-parserange.o gsnapl_nosimd-getline.o gsnapl_nosimd-getopt.o gsnapl_nosimd-getopt1.o gsnapl_nosimd-gsnap.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o gmap.avx2 gmap_avx2-except.o gmap_avx2-assert.o gmap_avx2-mem.o gmap_avx2-intlist.o gmap_avx2-uintlist.o gmap_avx2-list.o gmap_avx2-littleendian.o gmap_avx2-bigendian.o gmap_avx2-univinterval.o gmap_avx2-interval.o gmap_avx2-stopwatch.o gmap_avx2-semaphore.o gmap_avx2-access.o gmap_avx2-filestring.o gmap_avx2-iit-read-univ.o gmap_avx2-iit-read.o gmap_avx2-md5.o gmap_avx2-bzip2.o gmap_avx2-fopen.o gmap_avx2-sequence.o gmap_avx2-reader.o gmap_avx2-genomicpos.o gmap_avx2-compress.o gmap_avx2-compress-write.o gmap_avx2-gbuffer.o gmap_avx2-genome.o gmap_avx2-popcount.o gmap_avx2-genome_sites.o gmap_avx2-genome-write.o gmap_avx2-bitpack64-read.o gmap_avx2-bitpack64-readtwo.o gmap_avx2-indexdb.o gmap_avx2-oligo.o gmap_avx2-block.o gmap_avx2-chrom.o gmap_avx2-segmentpos.o gmap_avx2-chrnum.o gmap_avx2-uinttable_rh.o gmap_avx2-gregion.o gmap_avx2-match.o gmap_avx2-matchpool.o gmap_avx2-diagnostic.o gmap_avx2-stage1.o gmap_avx2-diag.o gmap_avx2-diagpool.o gmap_avx2-cmet.o gmap_avx2-atoi.o gmap_avx2-orderstat.o gmap_avx2-oligoindex_hr.o gmap_avx2-transcript.o gmap_avx2-intron.o gmap_avx2-maxent.o gmap_avx2-maxent_hr.o gmap_avx2-pair.o gmap_avx2-pairpool.o gmap_avx2-cellpool.o gmap_avx2-stage2.o gmap_avx2-doublelist.o gmap_avx2-smooth.o gmap_avx2-splicestringpool.o gmap_avx2-splicetrie_build.o gmap_avx2-splicetrie.o gmap_avx2-boyer-moore.o gmap_avx2-dynprog.o gmap_avx2-dynprog_simd.o gmap_avx2-dynprog_single.o gmap_avx2-dynprog_genome.o gmap_avx2-dynprog_cdna.o gmap_avx2-dynprog_end.o gmap_avx2-translation.o gmap_avx2-pbinom.o gmap_avx2-changepoint.o gmap_avx2-stage3.o gmap_avx2-request.o gmap_avx2-result.o gmap_avx2-output.o gmap_avx2-inbuffer.o gmap_avx2-samheader.o gmap_avx2-outbuffer.o gmap_avx2-chimera.o gmap_avx2-datadir.o gmap_avx2-parserange.o gmap_avx2-getline.o gmap_avx2-getopt.o gmap_avx2-getopt1.o gmap_avx2-gmap.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o gmapl.avx2 gmapl_avx2-except.o gmapl_avx2-assert.o gmapl_avx2-mem.o gmapl_avx2-intlist.o gmapl_avx2-uintlist.o gmapl_avx2-uint8list.o gmapl_avx2-list.o gmapl_avx2-littleendian.o gmapl_avx2-bigendian.o gmapl_avx2-univinterval.o gmapl_avx2-interval.o gmapl_avx2-stopwatch.o gmapl_avx2-semaphore.o gmapl_avx2-access.o gmapl_avx2-filestring.o gmapl_avx2-iit-read-univ.o gmapl_avx2-iit-read.o gmapl_avx2-md5.o gmapl_avx2-bzip2.o gmapl_avx2-fopen.o gmapl_avx2-sequence.o gmapl_avx2-reader.o gmapl_avx2-genomicpos.o gmapl_avx2-compress.o gmapl_avx2-compress-write.o gmapl_avx2-gbuffer.o gmapl_avx2-genome.o gmapl_avx2-popcount.o gmapl_avx2-genome_sites.o gmapl_avx2-genome-write.o gmapl_avx2-bitpack64-read.o gmapl_avx2-bitpack64-readtwo.o gmapl_avx2-indexdb.o gmapl_avx2-oligo.o gmapl_avx2-block.o gmapl_avx2-chrom.o gmapl_avx2-segmentpos.o gmapl_avx2-chrnum.o gmapl_avx2-uinttable_rh.o gmapl_avx2-gregion.o gmapl_avx2-match.o gmapl_avx2-matchpool.o gmapl_avx2-diagnostic.o gmapl_avx2-stage1.o gmapl_avx2-diag.o gmapl_avx2-diagpool.o gmapl_avx2-cmet.o gmapl_avx2-atoi.o gmapl_avx2-orderstat.o gmapl_avx2-oligoindex_hr.o gmapl_avx2-transcript.o gmapl_avx2-intron.o gmapl_avx2-maxent.o gmapl_avx2-maxent_hr.o gmapl_avx2-pair.o gmapl_avx2-pairpool.o gmapl_avx2-cellpool.o gmapl_avx2-stage2.o gmapl_avx2-doublelist.o gmapl_avx2-smooth.o gmapl_avx2-splicestringpool.o gmapl_avx2-splicetrie_build.o gmapl_avx2-splicetrie.o gmapl_avx2-boyer-moore.o gmapl_avx2-dynprog.o gmapl_avx2-dynprog_simd.o gmapl_avx2-dynprog_single.o gmapl_avx2-dynprog_genome.o gmapl_avx2-dynprog_cdna.o gmapl_avx2-dynprog_end.o gmapl_avx2-translation.o gmapl_avx2-pbinom.o gmapl_avx2-changepoint.o gmapl_avx2-stage3.o gmapl_avx2-request.o gmapl_avx2-result.o gmapl_avx2-output.o gmapl_avx2-inbuffer.o gmapl_avx2-samheader.o gmapl_avx2-outbuffer.o gmapl_avx2-chimera.o gmapl_avx2-datadir.o gmapl_avx2-parserange.o gmapl_avx2-getline.o gmapl_avx2-getopt.o gmapl_avx2-getopt1.o gmapl_avx2-gmap.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o gsnap.avx2 gsnap_avx2-except.o gsnap_avx2-assert.o gsnap_avx2-mem.o gsnap_avx2-intlist.o gsnap_avx2-uintlist.o gsnap_avx2-list.o gsnap_avx2-littleendian.o gsnap_avx2-bigendian.o gsnap_avx2-univinterval.o gsnap_avx2-interval.o gsnap_avx2-stopwatch.o gsnap_avx2-semaphore.o gsnap_avx2-access.o gsnap_avx2-filestring.o gsnap_avx2-iit-read-univ.o gsnap_avx2-iit-read.o gsnap_avx2-bzip2.o gsnap_avx2-reader.o gsnap_avx2-genomicpos.o gsnap_avx2-compress.o gsnap_avx2-genome.o gsnap_avx2-transcriptome.o gsnap_avx2-popcount.o gsnap_avx2-genome128_hr.o gsnap_avx2-genome128_consec.o gsnap_avx2-genome_sites.o gsnap_avx2-bitpack64-read.o gsnap_avx2-bitpack64-readtwo.o gsnap_avx2-merge-uint4.o gsnap_avx2-merge-diagonals-simd-uint4.o gsnap_avx2-indexdb.o gsnap_avx2-regiondb.o gsnap_avx2-oligo.o gsnap_avx2-chrnum.o gsnap_avx2-maxent_hr.o gsnap_avx2-mdprint.o gsnap_avx2-cigar.o gsnap_avx2-samprint.o gsnap_avx2-mapq.o gsnap_avx2-fopen.o gsnap_avx2-shortread.o gsnap_avx2-substring.o gsnap_avx2-junction.o gsnap_avx2-transcript.o gsnap_avx2-method.o gsnap_avx2-stage3hr.o gsnap_avx2-ladder.o gsnap_avx2-concordance.o gsnap_avx2-simplepair.o gsnap_avx2-maxent.o gsnap_avx2-orderstat.o gsnap_avx2-intlistpool.o gsnap_avx2-uintlistpool.o gsnap_avx2-listpool.o gsnap_avx2-hitlistpool.o gsnap_avx2-intron.o gsnap_avx2-gbuffer.o gsnap_avx2-knownsplicing.o gsnap_avx2-splice.o gsnap_avx2-indel.o gsnap_avx2-bitpack64-access.o gsnap_avx2-univdiag.o gsnap_avx2-univdiagpool.o gsnap_avx2-sedgesort.o gsnap_avx2-intersect.o gsnap_avx2-kmer-search.o gsnap_avx2-path-solve.o gsnap_avx2-extension-search.o gsnap_avx2-segment-search.o gsnap_avx2-terminal.o gsnap_avx2-distant-rna.o gsnap_avx2-distant-dna.o gsnap_avx2-uint8table_rh.o gsnap_avx2-uinttable_rh.o gsnap_avx2-stage1hr.o gsnap_avx2-request.o gsnap_avx2-resulthr.o gsnap_avx2-output.o gsnap_avx2-inbuffer.o gsnap_avx2-samheader.o gsnap_avx2-outbuffer.o gsnap_avx2-datadir.o gsnap_avx2-parserange.o gsnap_avx2-getline.o gsnap_avx2-getopt.o gsnap_avx2-getopt1.o gsnap_avx2-gsnap.o -lz -lbz2 -lm >x86_64-gentoo-linux-musl-gcc -DTARGET=\"x86_64-gentoo-linux-musl\" -DGMAPDB=\"/usr/share\" -DMAX_STACK_READLENGTH=300 -DGSNAP=1 -DLARGE_GENOMES=1 -mpopcnt -DHAVE_SSE2=1 -DHAVE_SSSE3=1 -DHAVE_SSE4_1=1 -DHAVE_SSE4_2=1 -DHAVE_AVX2=1 -msse2 -mssse3 -msse4.1 -msse4.2 -mavx2 -O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color -fmessage-length=0 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -o gsnapl.avx2 gsnapl_avx2-except.o gsnapl_avx2-assert.o gsnapl_avx2-mem.o gsnapl_avx2-intlist.o gsnapl_avx2-uintlist.o gsnapl_avx2-uint8list.o gsnapl_avx2-list.o gsnapl_avx2-littleendian.o gsnapl_avx2-bigendian.o gsnapl_avx2-univinterval.o gsnapl_avx2-interval.o gsnapl_avx2-stopwatch.o gsnapl_avx2-semaphore.o gsnapl_avx2-access.o gsnapl_avx2-filestring.o gsnapl_avx2-iit-read-univ.o gsnapl_avx2-iit-read.o gsnapl_avx2-bzip2.o gsnapl_avx2-reader.o gsnapl_avx2-genomicpos.o gsnapl_avx2-compress.o gsnapl_avx2-genome.o gsnapl_avx2-transcriptome.o gsnapl_avx2-popcount.o gsnapl_avx2-genome128_hr.o gsnapl_avx2-genome128_consec.o gsnapl_avx2-genome_sites.o gsnapl_avx2-bitpack64-read.o gsnapl_avx2-bitpack64-readtwo.o gsnapl_avx2-merge-diagonals-heap.o gsnapl_avx2-merge-uint8.o gsnapl_avx2-merge-diagonals-simd-uint8.o gsnapl_avx2-merge-uint4.o gsnapl_avx2-merge-diagonals-simd-uint4.o gsnapl_avx2-indexdb.o gsnapl_avx2-regiondb.o gsnapl_avx2-oligo.o gsnapl_avx2-chrnum.o gsnapl_avx2-maxent_hr.o gsnapl_avx2-mdprint.o gsnapl_avx2-cigar.o gsnapl_avx2-samprint.o gsnapl_avx2-mapq.o gsnapl_avx2-fopen.o gsnapl_avx2-shortread.o gsnapl_avx2-substring.o gsnapl_avx2-junction.o gsnapl_avx2-transcript.o gsnapl_avx2-method.o gsnapl_avx2-stage3hr.o gsnapl_avx2-ladder.o gsnapl_avx2-concordance.o gsnapl_avx2-simplepair.o gsnapl_avx2-maxent.o gsnapl_avx2-orderstat.o gsnapl_avx2-intlistpool.o gsnapl_avx2-uint8listpool.o gsnapl_avx2-listpool.o gsnapl_avx2-hitlistpool.o gsnapl_avx2-intron.o gsnapl_avx2-gbuffer.o gsnapl_avx2-knownsplicing.o gsnapl_avx2-splice.o gsnapl_avx2-indel.o gsnapl_avx2-bitpack64-access.o gsnapl_avx2-univdiag.o gsnapl_avx2-univdiagpool.o gsnapl_avx2-sedgesort.o gsnapl_avx2-intersect.o gsnapl_avx2-intersect-large.o gsnapl_avx2-kmer-search.o gsnapl_avx2-path-solve.o gsnapl_avx2-extension-search.o gsnapl_avx2-segment-search.o gsnapl_avx2-terminal.o gsnapl_avx2-distant-rna.o gsnapl_avx2-distant-dna.o gsnapl_avx2-uint8table_rh.o gsnapl_avx2-stage1hr.o gsnapl_avx2-request.o gsnapl_avx2-resulthr.o gsnapl_avx2-output.o gsnapl_avx2-inbuffer.o gsnapl_avx2-samheader.o gsnapl_avx2-outbuffer.o gsnapl_avx2-datadir.o gsnapl_avx2-parserange.o gsnapl_avx2-getline.o gsnapl_avx2-getopt.o gsnapl_avx2-getopt1.o gsnapl_avx2-gsnap.o -lz -lbz2 -lm >make[2]: Leaving directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/src' >make[1]: Leaving directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/src' >Making all in util >make[1]: Entering directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/util' >cp gmap_process.pl gmap_process >cp gmap_build.pl gmap_build >cp gmap_cat.pl gmap_cat >cp md_coords.pl md_coords >chmod +x gmap_process >chmod +x gmap_build >cp fa_coords.pl fa_coords >chmod +x gmap_cat >chmod +x md_coords >cp psl_splicesites.pl psl_splicesites >cp psl_introns.pl psl_introns >chmod +x fa_coords >cp psl_genes.pl psl_genes >chmod +x psl_splicesites >cp ensembl_genes.pl ensembl_genes >chmod +x psl_introns >cp gtf_splicesites.pl gtf_splicesites >chmod +x psl_genes >cp gtf_introns.pl gtf_introns >chmod +x ensembl_genes >cp gtf_genes.pl gtf_genes >chmod +x gtf_splicesites >cp gtf_transcript_splicesites.pl gtf_transcript_splicesites >chmod +x gtf_introns >cp gff3_splicesites.pl gff3_splicesites >chmod +x gtf_genes >cp gff3_introns.pl gff3_introns >chmod +x gtf_transcript_splicesites >cp gff3_genes.pl gff3_genes >chmod +x gff3_splicesites >chmod +x gff3_introns >cp dbsnp_iit.pl dbsnp_iit >chmod +x gff3_genes >cp gvf_iit.pl gvf_iit >cp vcf_iit.pl vcf_iit >chmod +x dbsnp_iit >chmod +x vcf_iit >chmod +x gvf_iit >make[1]: Leaving directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/util' >Making all in tests >make[1]: Entering directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/tests' >make[1]: Nothing to be done for 'all'. >make[1]: Leaving directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/tests' >make[1]: Entering directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27' >make[1]: Nothing to be done for 'all-am'. >make[1]: Leaving directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27' >>>> Source compiled. >>>> Test phase: sci-biology/gmap-2020.10.27 >make -j16 check >Making check in src >make[1]: Entering directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/src' >make[1]: Leaving directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/src' >Making check in util >make[1]: Entering directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/util' >make[1]: Nothing to be done for 'check'. >make[1]: Leaving directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/util' >Making check in tests >make[1]: Entering directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/tests' >make check-TESTS >make[2]: Entering directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/tests' >make[3]: Entering directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/tests' >FAIL: align.test >PASS: iit.test > * ACCESS DENIED: open_wr: 'coords.chr17test' (from deleted directory, see https://bugs.gentoo.org/590084) >FAIL: coords1.test >PASS: setup1.test >make[4]: Entering directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/tests' >make[4]: Nothing to be done for 'all'. >make[4]: Leaving directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/tests' >============================================================================ >Testsuite summary for gmap 2020-10-27 >============================================================================ ># TOTAL: 4 ># PASS: 2 ># SKIP: 0 ># XFAIL: 0 ># FAIL: 2 ># XPASS: 0 ># ERROR: 0 >============================================================================ >See tests/test-suite.log >Please report to Thomas Wu <twu@gene.com> >============================================================================ >make[3]: *** [Makefile:539: test-suite.log] Error 1 >make[3]: Leaving directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/tests' >make[2]: *** [Makefile:647: check-TESTS] Error 2 >make[2]: Leaving directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/tests' >make[1]: *** [Makefile:710: check-am] Error 2 >make[1]: Leaving directory '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27/tests' >make: *** [Makefile:389: check-recursive] Error 1 > * ERROR: sci-biology/gmap-2020.10.27::gentoo failed (test phase): > * Make check failed. See above for details. > * > * Call stack: > * ebuild.sh, line 127: Called src_test > * environment, line 606: Called default > * phase-functions.sh, line 858: Called default_src_test > * phase-functions.sh, line 887: Called __eapi0_src_test > * phase-helpers.sh, line 809: Called die > * The specific snippet of code: > * $emake_cmd ${internal_opts} check || \ > * die "Make check failed. See above for details." > * > * If you need support, post the output of `emerge --info '=sci-biology/gmap-2020.10.27::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-biology/gmap-2020.10.27::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/sci-biology/gmap-2020.10.27:20220405-071509.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/gmap-2020.10.27/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-biology/gmap-2020.10.27/temp/environment'. > * Working directory: '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27' > * S: '/var/tmp/portage/sci-biology/gmap-2020.10.27/work/gmap-2020-10-27' >
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