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Gentoo's Bugzilla – Attachment 748677 Details for
Bug 821712
sci-chemistry/gromacs-2022_beta1-r1 fails to compile
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1-CMakeOutput.log
1-CMakeOutput.log (text/plain), 113.60 KB, created by
Agostino Sarubbo
on 2021-11-04 20:26:24 UTC
(
hide
)
Description:
1-CMakeOutput.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2021-11-04 20:26:24 UTC
Size:
113.60 KB
patch
obsolete
>The system is: Linux - 4.19.174-gentoo - x86_64 >Compiling the C compiler identification source file "CMakeCCompilerId.c" succeeded. >Compiler: /usr/bin/x86_64-pc-linux-gnu-gcc >Build flags: -O2;-pipe;-march=x86-64;-frecord-gcc-switches >Id flags: > >The output was: >0 > > >Compilation of the C compiler identification source "CMakeCCompilerId.c" produced "a.out" > >The C compiler identification is GNU, found in "/var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/3.21.4/CompilerIdC/a.out" > >Compiling the CXX compiler identification source file "CMakeCXXCompilerId.cpp" succeeded. >Compiler: /usr/bin/x86_64-pc-linux-gnu-g++ >Build flags: -O2;-pipe;-march=x86-64;-frecord-gcc-switches >Id flags: > >The output was: >0 > > >Compilation of the CXX compiler identification source "CMakeCXXCompilerId.cpp" produced "a.out" > >The CXX compiler identification is GNU, found in "/var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/3.21.4/CompilerIdCXX/a.out" > >Detecting C compiler ABI info compiled with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_ae8a9 && [1/2] Building C object CMakeFiles/cmTC_ae8a9.dir/CMakeCCompilerABI.c.o >Using built-in specs. >COLLECT_GCC=/usr/bin/x86_64-pc-linux-gnu-gcc >Target: x86_64-pc-linux-gnu >Configured with: /var/tmp/portage/sys-devel/gcc-11.2.0/work/gcc-11.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/11.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/11.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/11.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/11.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include/g++-v11 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/11.2.0/python --enable-languages=c,c++,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --disable-libunwind-exceptions --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 11.2.0 p1' --disable-esp --enable-libstdcxx-time --with-build-config=bootstrap-lto --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-fixed-point --enable-targets=all --enable-libgomp --disable-libssp --disable-libada --disable-systemtap --disable-valgrind-annotations --disable-vtable-verify --disable-libvtv --without-zstd --enable-lto --with-isl --disable-isl-version-check --enable-default-pie --enable-default-ssp >Thread model: posix >Supported LTO compression algorithms: zlib >gcc version 11.2.0 (Gentoo 11.2.0 p1) >COLLECT_GCC_OPTIONS='-O2' '-pipe' '-march=x86-64' '-frecord-gcc-switches' '-v' '-o' 'CMakeFiles/cmTC_ae8a9.dir/CMakeCCompilerABI.c.o' '-c' '-dumpdir' 'CMakeFiles/cmTC_ae8a9.dir/' > /usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/cc1 -quiet -v /usr/share/cmake/Modules/CMakeCCompilerABI.c -quiet -dumpdir CMakeFiles/cmTC_ae8a9.dir/ -dumpbase CMakeCCompilerABI.c.c -dumpbase-ext .c -march=x86-64 -O2 -version -frecord-gcc-switches -o - | > /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/as -v --64 -o CMakeFiles/cmTC_ae8a9.dir/CMakeCCompilerABI.c.o >GNU assembler version 2.37 (x86_64-pc-linux-gnu) using BFD version (Gentoo 2.37_p1 p0) 2.37 >GNU C17 (Gentoo 11.2.0 p1) version 11.2.0 (x86_64-pc-linux-gnu) > compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.24-GMP > >warning: MPFR header version 4.1.0 differs from library version 4.1.0-p13. >GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 >ignoring nonexistent directory "/usr/local/include" >ignoring nonexistent directory "/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/include" >#include "..." search starts here: >#include <...> search starts here: > /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include > /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include-fixed > /usr/include >End of search list. >GNU C17 (Gentoo 11.2.0 p1) version 11.2.0 (x86_64-pc-linux-gnu) > compiled by GNU C version 11.2.0, GMP version 6.2.1, MPFR version 4.1.0, MPC version 1.2.1, isl version isl-0.24-GMP > >warning: MPFR header version 4.1.0 differs from library version 4.1.0-p13. >GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 >Compiler executable checksum: bd65cffe0fe96b1dd0e9ed6188eb828c >COMPILER_PATH=/usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/libexec/gcc/x86_64-pc-linux-gnu/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/lib/gcc/x86_64-pc-linux-gnu/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/ >LIBRARY_PATH=/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/lib/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../:/lib/:/usr/lib/ >COLLECT_GCC_OPTIONS='-O2' '-pipe' '-march=x86-64' '-frecord-gcc-switches' '-v' '-o' 'CMakeFiles/cmTC_ae8a9.dir/CMakeCCompilerABI.c.o' '-c' '-dumpdir' 'CMakeFiles/cmTC_ae8a9.dir/CMakeCCompilerABI.c.' >[2/2] Linking C executable cmTC_ae8a9 >Using built-in specs. >COLLECT_GCC=/usr/bin/x86_64-pc-linux-gnu-gcc >COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/lto-wrapper >Target: x86_64-pc-linux-gnu >Configured with: /var/tmp/portage/sys-devel/gcc-11.2.0/work/gcc-11.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/11.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/11.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/11.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/11.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include/g++-v11 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/11.2.0/python --enable-languages=c,c++,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --disable-libunwind-exceptions --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 11.2.0 p1' --disable-esp --enable-libstdcxx-time --with-build-config=bootstrap-lto --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-fixed-point --enable-targets=all --enable-libgomp --disable-libssp --disable-libada --disable-systemtap --disable-valgrind-annotations --disable-vtable-verify --disable-libvtv --without-zstd --enable-lto --with-isl --disable-isl-version-check --enable-default-pie --enable-default-ssp >Thread model: posix >Supported LTO compression algorithms: zlib >gcc version 11.2.0 (Gentoo 11.2.0 p1) >COMPILER_PATH=/usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/libexec/gcc/x86_64-pc-linux-gnu/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/lib/gcc/x86_64-pc-linux-gnu/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/ >LIBRARY_PATH=/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/lib/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../:/lib/:/usr/lib/ >COLLECT_GCC_OPTIONS='-O2' '-pipe' '-march=x86-64' '-frecord-gcc-switches' '-v' '-o' 'cmTC_ae8a9' '-dumpdir' 'cmTC_ae8a9.' > /usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/collect2 -plugin /usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/lto-wrapper -plugin-opt=-fresolution=/var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/temp/cc9SKfxz.res -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lgcc_s --eh-frame-hdr -m elf_x86_64 -dynamic-linker /lib64/ld-linux-x86-64.so.2 -pie -o cmTC_ae8a9 /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64/Scrt1.o /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/crtbeginS.o -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../.. -O1 --as-needed --defsym=__gentoo_check_ldflags__=0 CMakeFiles/cmTC_ae8a9.dir/CMakeCCompilerABI.c.o -lgcc --push-state --as-needed -lgcc_s --pop-state -lc -lgcc --push-state --as-needed -lgcc_s --pop-state /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64/crtn.o >COLLECT_GCC_OPTIONS='-O2' '-pipe' '-march=x86-64' '-frecord-gcc-switches' '-v' '-o' 'cmTC_ae8a9' '-dumpdir' 'cmTC_ae8a9.' > > > >Parsed C implicit include dir info from above output: rv=done > found start of include info > found start of implicit include info > add: [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include] > add: [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include-fixed] > add: [/usr/include] > end of search list found > collapse include dir [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include] ==> [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include] > collapse include dir [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include-fixed] ==> [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include-fixed] > collapse include dir [/usr/include] ==> [/usr/include] > implicit include dirs: [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include;/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include-fixed;/usr/include] > > >Parsed C implicit link information from above output: > link line regex: [^( *|.*[/\])(x86_64-pc-linux-gnu-ld|CMAKE_LINK_STARTFILE-NOTFOUND|([^/\]+-)?ld|collect2)[^/\]*( |$)] > ignore line: [Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp] > ignore line: [] > ignore line: [Run Build Command(s):/usr/bin/ninja cmTC_ae8a9 && [1/2] Building C object CMakeFiles/cmTC_ae8a9.dir/CMakeCCompilerABI.c.o] > ignore line: [Using built-in specs.] > ignore line: [COLLECT_GCC=/usr/bin/x86_64-pc-linux-gnu-gcc] > ignore line: [Target: x86_64-pc-linux-gnu] > ignore line: [Configured with: /var/tmp/portage/sys-devel/gcc-11.2.0/work/gcc-11.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/11.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/11.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/11.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/11.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include/g++-v11 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/11.2.0/python --enable-languages=c c++ fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib 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'CMakeFiles/cmTC_ae8a9.dir/'] > ignore line: [ /usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/cc1 -quiet -v /usr/share/cmake/Modules/CMakeCCompilerABI.c -quiet -dumpdir CMakeFiles/cmTC_ae8a9.dir/ -dumpbase CMakeCCompilerABI.c.c -dumpbase-ext .c -march=x86-64 -O2 -version -frecord-gcc-switches -o - |] > ignore line: [ /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/as -v --64 -o CMakeFiles/cmTC_ae8a9.dir/CMakeCCompilerABI.c.o] > ignore line: [GNU assembler version 2.37 (x86_64-pc-linux-gnu) using BFD version (Gentoo 2.37_p1 p0) 2.37] > ignore line: [GNU C17 (Gentoo 11.2.0 p1) version 11.2.0 (x86_64-pc-linux-gnu)] > ignore line: [ compiled by GNU C version 11.2.0 GMP version 6.2.1 MPFR version 4.1.0 MPC version 1.2.1 isl version isl-0.24-GMP] > ignore line: [] > ignore line: [warning: MPFR header version 4.1.0 differs from library version 4.1.0-p13.] > ignore line: [GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072] > ignore line: [ignoring nonexistent directory "/usr/local/include"] > ignore line: [ignoring nonexistent directory "/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/include"] > ignore line: [#include "..." search starts here:] > ignore line: [#include <...> search starts here:] > ignore line: [ /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include] > ignore line: [ /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/include-fixed] > ignore line: [ /usr/include] > ignore line: [End of search list.] > ignore line: [GNU C17 (Gentoo 11.2.0 p1) version 11.2.0 (x86_64-pc-linux-gnu)] > ignore line: [ compiled by GNU C version 11.2.0 GMP version 6.2.1 MPFR version 4.1.0 MPC version 1.2.1 isl version isl-0.24-GMP] > ignore line: [] > ignore line: [warning: MPFR header version 4.1.0 differs from library version 4.1.0-p13.] > ignore line: [GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072] > ignore line: [Compiler executable checksum: bd65cffe0fe96b1dd0e9ed6188eb828c] > ignore line: [COMPILER_PATH=/usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/libexec/gcc/x86_64-pc-linux-gnu/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/lib/gcc/x86_64-pc-linux-gnu/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/] > ignore line: [LIBRARY_PATH=/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/lib/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../:/lib/:/usr/lib/] > ignore line: [COLLECT_GCC_OPTIONS='-O2' '-pipe' '-march=x86-64' '-frecord-gcc-switches' '-v' '-o' 'CMakeFiles/cmTC_ae8a9.dir/CMakeCCompilerABI.c.o' '-c' '-dumpdir' 'CMakeFiles/cmTC_ae8a9.dir/CMakeCCompilerABI.c.'] > ignore line: [[2/2] Linking C executable cmTC_ae8a9] > ignore line: [Using built-in specs.] > ignore line: [COLLECT_GCC=/usr/bin/x86_64-pc-linux-gnu-gcc] > ignore line: 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[COMPILER_PATH=/usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/libexec/gcc/x86_64-pc-linux-gnu/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/lib/gcc/x86_64-pc-linux-gnu/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/bin/] > ignore line: [LIBRARY_PATH=/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64/:/lib/../lib64/:/usr/lib/../lib64/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/lib/:/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../:/lib/:/usr/lib/] > ignore line: [Reading specs from /usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/libgomp.spec] > ignore line: [COLLECT_GCC_OPTIONS='-O2' '-pipe' '-march=x86-64' '-frecord-gcc-switches' '-fopenmp' '-v' '-o' 'cmTC_283b3' '-v' '-shared-libgcc' '-pthread' '-dumpdir' 'cmTC_283b3.'] > link line: [ /usr/libexec/gcc/x86_64-pc-linux-gnu/11.2.0/collect2 -plugin 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==> ignore > arg [elf_x86_64] ==> ignore > arg [-dynamic-linker] ==> ignore > arg [/lib64/ld-linux-x86-64.so.2] ==> ignore > arg [-pie] ==> ignore > arg [-o] ==> ignore > arg [cmTC_283b3] ==> ignore > arg [-L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0] ==> dir [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0] > arg [-L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64] ==> dir [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64] > arg [-L/lib/../lib64] ==> dir [/lib/../lib64] > arg [-L/usr/lib/../lib64] ==> dir [/usr/lib/../lib64] > arg [-L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/lib] ==> dir [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/lib] > arg [-L/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../..] ==> dir [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../..] > arg [-O1] ==> ignore > arg [--as-needed] ==> ignore > arg [--defsym=__gentoo_check_ldflags__=0] ==> ignore > arg [CMakeFiles/cmTC_283b3.dir/OpenMPTryFlag.cpp.o] ==> ignore > arg [-lstdc++] ==> lib [stdc++] > arg [-lm] ==> lib [m] > arg [-lgomp] ==> lib [gomp] > arg [-lgcc_s] ==> lib [gcc_s] > arg [-lgcc] ==> lib [gcc] > arg [-lpthread] ==> lib [pthread] > arg [-lc] ==> lib [c] > arg [-lgcc_s] ==> lib [gcc_s] > arg [-lgcc] ==> lib [gcc] > collapse library dir [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0] ==> [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0] > collapse library dir [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../lib64] ==> [/usr/lib64] > collapse library dir [/lib/../lib64] ==> [/lib64] > collapse library dir [/usr/lib/../lib64] ==> [/usr/lib64] > collapse library dir [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../../../x86_64-pc-linux-gnu/lib] ==> [/usr/x86_64-pc-linux-gnu/lib] > collapse library dir [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0/../../..] ==> [/usr/lib] > implicit libs: [stdc++;m;gomp;gcc_s;gcc;pthread;c;gcc_s;gcc] > implicit objs: [] > implicit dirs: [/usr/lib/gcc/x86_64-pc-linux-gnu/11.2.0;/usr/lib64;/lib64;/usr/x86_64-pc-linux-gnu/lib;/usr/lib] > implicit fwks: [] > > >Performing C SOURCE FILE Test CFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_a2fce && [1/2] Building C object CMakeFiles/cmTC_a2fce.dir/src.c.o >[2/2] Linking C executable cmTC_a2fce > > >Source file was: >int main(void) { return 0; } >Performing C SOURCE FILE Test CFLAGS_EXCESS_PREC succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_6c80f && [1/2] Building C object CMakeFiles/cmTC_6c80f.dir/src.c.o >[2/2] Linking C executable cmTC_6c80f > > >Source file was: >int main(void) { return 0; } >Performing C SOURCE FILE Test CFLAGS_COPT succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_f50ae && [1/2] Building C object CMakeFiles/cmTC_f50ae.dir/src.c.o >[2/2] Linking C executable cmTC_f50ae > > >Source file was: >int main(void) { return 0; } >Performing C SOURCE FILE Test CFLAGS_NOINLINE succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_a2834 && [1/2] Building C object CMakeFiles/cmTC_a2834.dir/src.c.o >[2/2] Linking C executable cmTC_a2834 > > >Source file was: >int main(void) { return 0; } >Performing C++ SOURCE FILE Test CXXFLAGS_WARN_NO_MISSING_FIELD_INITIALIZERS succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_729f0 && [1/2] Building CXX object CMakeFiles/cmTC_729f0.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_729f0 > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test CXXFLAGS_EXCESS_PREC succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_aee35 && [1/2] Building CXX object CMakeFiles/cmTC_aee35.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_aee35 > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test CXXFLAGS_COPT succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_79423 && [1/2] Building CXX object CMakeFiles/cmTC_79423.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_79423 > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test CXXFLAGS_NOINLINE succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_d45b0 && [1/2] Building CXX object CMakeFiles/cmTC_d45b0.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_d45b0 > > >Source file was: >int main() { return 0; } >Determining if files unistd.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_8de0e && [1/2] Building C object CMakeFiles/cmTC_8de0e.dir/HAVE_UNISTD_H.c.o >[2/2] Linking C executable cmTC_8de0e > > > >Determining if files pwd.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_c56f1 && [1/2] Building C object CMakeFiles/cmTC_c56f1.dir/HAVE_PWD_H.c.o >[2/2] Linking C executable cmTC_c56f1 > > > >Determining if files dirent.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_d8346 && [1/2] Building C object CMakeFiles/cmTC_d8346.dir/HAVE_DIRENT_H.c.o >[2/2] Linking C executable cmTC_d8346 > > > >Determining if files time.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_964c0 && [1/2] Building C object CMakeFiles/cmTC_964c0.dir/HAVE_TIME_H.c.o >[2/2] Linking C executable cmTC_964c0 > > > >Determining if files sys/time.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_34e6c && [1/2] Building C object CMakeFiles/cmTC_34e6c.dir/HAVE_SYS_TIME_H.c.o >[2/2] Linking C executable cmTC_34e6c > > > >Determining if files sched.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_da427 && [1/2] Building C object CMakeFiles/cmTC_da427.dir/HAVE_SCHED_H.c.o >[2/2] Linking C executable cmTC_da427 > > > >Determining if files xmmintrin.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_c2cc2 && [1/2] Building C object CMakeFiles/cmTC_c2cc2.dir/HAVE_XMMINTRIN_H.c.o >[2/2] Linking C executable cmTC_c2cc2 > > > >Determining if the gettimeofday exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_78734 && [1/2] Building CXX object CMakeFiles/cmTC_78734.dir/CheckSymbolExists.cxx.o >[2/2] Linking CXX executable cmTC_78734 > > >File /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: >/* */ >#include <sys/time.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef gettimeofday > return ((int*)(&gettimeofday))[argc]; >#else > (void)argc; > return 0; >#endif >} >Determining if the sysconf exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_67d15 && [1/2] Building CXX object CMakeFiles/cmTC_67d15.dir/CheckSymbolExists.cxx.o >[2/2] Linking CXX executable cmTC_67d15 > > >File /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: >/* */ >#include <unistd.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef sysconf > return ((int*)(&sysconf))[argc]; >#else > (void)argc; > return 0; >#endif >} >Determining if the nice exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_6b53f && [1/2] Building CXX object CMakeFiles/cmTC_6b53f.dir/CheckSymbolExists.cxx.o >[2/2] Linking CXX executable cmTC_6b53f > > >File /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: >/* */ >#include <unistd.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef nice > return ((int*)(&nice))[argc]; >#else > (void)argc; > return 0; >#endif >} >Determining if the fsync exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_34134 && [1/2] Building CXX object CMakeFiles/cmTC_34134.dir/CheckSymbolExists.cxx.o >[2/2] Linking CXX executable cmTC_34134 > > >File /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: >/* */ >#include <unistd.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef fsync > return ((int*)(&fsync))[argc]; >#else > (void)argc; > return 0; >#endif >} >Determining if the fileno exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_a7b57 && [1/2] Building CXX object CMakeFiles/cmTC_a7b57.dir/CheckSymbolExists.cxx.o >[2/2] Linking CXX executable cmTC_a7b57 > > >File /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: >/* */ >#include <stdio.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef fileno > return ((int*)(&fileno))[argc]; >#else > (void)argc; > return 0; >#endif >} >Determining if the sigaction exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_24c54 && [1/2] Building CXX object CMakeFiles/cmTC_24c54.dir/CheckSymbolExists.cxx.o >[2/2] Linking CXX executable cmTC_24c54 > > >File /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: >/* */ >#include <signal.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef sigaction > return ((int*)(&sigaction))[argc]; >#else > (void)argc; > return 0; >#endif >} >Performing C++ SOURCE FILE Test HAVE_BUILTIN_CLZ succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_0b4a3 && [1/2] Building CXX object CMakeFiles/cmTC_0b4a3.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_0b4a3 > > >Source file was: >int main(){ return __builtin_clz(1);} >Performing C++ SOURCE FILE Test HAVE_BUILTIN_CLZLL succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_bae68 && [1/2] Building CXX object CMakeFiles/cmTC_bae68.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_bae68 > > >Source file was: >int main(){ return __builtin_clzll(1);} >Determining if the function clock_gettime exists in the rt passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_a4a7b && [1/2] Building C object CMakeFiles/cmTC_a4a7b.dir/CheckFunctionExists.c.o >[2/2] Linking C executable cmTC_a4a7b > > > >Determining if the function feenableexcept exists in the m passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_d7b69 && [1/2] Building C object CMakeFiles/cmTC_d7b69.dir/CheckFunctionExists.c.o >[2/2] Linking C executable cmTC_d7b69 > > > >Determining if the function fedisableexcept exists in the m passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_007ba && [1/2] Building C object CMakeFiles/cmTC_007ba.dir/CheckFunctionExists.c.o >[2/2] Linking C executable cmTC_007ba > > > >Performing C SOURCE FILE Test sched_affinity_compile succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_9e509 && [1/2] Building C object CMakeFiles/cmTC_9e509.dir/src.c.o >[2/2] Linking C executable cmTC_9e509 > > >Source file was: >#ifndef _GNU_SOURCE >#define _GNU_SOURCE 1 >#endif >#include <sched.h> >int main(void) { > int i; > cpu_set_t mask; > CPU_ZERO(&mask); > sched_getaffinity(0, sizeof(cpu_set_t), &mask); > if(CPU_ISSET(0,&mask)) > { > CPU_CLR(0,&mask); > CPU_SET(0,&mask); > } > sched_setaffinity(0, sizeof(cpu_set_t), &mask); > return CPU_COUNT(&mask); >} >Determining if files mm_malloc.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_27342 && [1/2] Building C object CMakeFiles/cmTC_27342.dir/HAVE_MM_MALLOC_H.c.o >[2/2] Linking C executable cmTC_27342 > > > >Determining if files malloc.h exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_6debf && [1/2] Building C object CMakeFiles/cmTC_6debf.dir/HAVE_MALLOC_H.c.o >[2/2] Linking C executable cmTC_6debf > > > >Determining if the posix_memalign exist passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_b5c7d && [1/2] Building CXX object CMakeFiles/cmTC_b5c7d.dir/CheckSymbolExists.cxx.o >[2/2] Linking CXX executable cmTC_b5c7d > > >File /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp/CheckSymbolExists.cxx: >/* */ >#include <stdlib.h> > >int main(int argc, char** argv) >{ > (void)argv; >#ifndef posix_memalign > return ((int*)(&posix_memalign))[argc]; >#else > (void)argc; > return 0; >#endif >} >Determining if the function hwloc_topology_init exists passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_a2e34 && [1/2] Building C object CMakeFiles/cmTC_a2e34.dir/CheckFunctionExists.c.o >[2/2] Linking C executable cmTC_a2e34 > > > >Determining if the include file pthread.h exists passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_78d34 && [1/2] Building C object CMakeFiles/cmTC_78d34.dir/CheckIncludeFile.c.o >[2/2] Linking C executable cmTC_78d34 > > > >Determining if the function pthread_create exists in the pthread passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_ade20 && [1/2] Building C object CMakeFiles/cmTC_ade20.dir/CheckFunctionExists.c.o >[2/2] Linking C executable cmTC_ade20 > > > >Determining if the include file pthread.h exists passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_791bc && [1/2] Building CXX object CMakeFiles/cmTC_791bc.dir/CheckIncludeFile.cxx.o >[2/2] Linking CXX executable cmTC_791bc > > > >Performing C++ SOURCE FILE Test TEST_ATOMICS succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_3e071 && [1/2] Building CXX object CMakeFiles/cmTC_3e071.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_3e071 > > >Source file was: > >// Set a define that forces a compilation error if this platform >// is not yet supported. >#define TMPI_CHECK_ATOMICS > >// Include the portable atomics implementation to test >#include "thread_mpi/atomic.h" > >int main(void) >{ > int i; > void *ptr; > tMPI_Atomic_t some_atomic; > tMPI_Atomic_ptr_t *some_atomic_ptr = NULL; > tMPI_Spinlock_t some_spinlock; > > /* Make the compiler actually emit code for these functions, so > that things like inability to emit inline assembly get > tested. It is not expected that the code below can run. */ > tMPI_Atomic_memory_barrier(); > tMPI_Atomic_memory_barrier_acq(); > tMPI_Atomic_memory_barrier_rel(); > tMPI_Atomic_set(&some_atomic, 0); > i = tMPI_Atomic_get(&some_atomic); > ptr = tMPI_Atomic_ptr_get(some_atomic_ptr); > tMPI_Atomic_ptr_set(some_atomic_ptr, ptr); > tMPI_Atomic_add_return(&some_atomic, 0); > tMPI_Atomic_fetch_add(&some_atomic, 0); > tMPI_Atomic_cas(&some_atomic, 0, 1); > tMPI_Atomic_ptr_cas(some_atomic_ptr, ptr, ptr); > tMPI_Atomic_swap(&some_atomic, 0); > tMPI_Atomic_ptr_swap(some_atomic_ptr, ptr); > tMPI_Spinlock_init(&some_spinlock); > tMPI_Spinlock_lock(&some_spinlock); > tMPI_Spinlock_trylock(&some_spinlock); > tMPI_Spinlock_unlock(&some_spinlock); > tMPI_Spinlock_islocked(&some_spinlock); > tMPI_Spinlock_wait(&some_spinlock); > return 0; >} >Performing C++ SOURCE FILE Test PTHREAD_SETAFFINITY succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_03de8 && [1/2] Building CXX object CMakeFiles/cmTC_03de8.dir/src.cxx.o >/var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp/src.cxx:1: warning: "_GNU_SOURCE" redefined > 1 | #define _GNU_SOURCE > | ><command-line>: note: this is the location of the previous definition >[2/2] Linking CXX executable cmTC_03de8 > > >Source file was: >#define _GNU_SOURCE >#include <pthread.h> >#include <stdlib.h> >#include <stdio.h> >#include <errno.h> > int main(void) { cpu_set_t set; > CPU_ZERO(&set); > CPU_SET(0, &set); > pthread_setaffinity_np(pthread_self(), sizeof(set), &set); > return 0; > } >Performing C SOURCE FILE Test C_mavx2_mfma_FLAG_ACCEPTED succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_67b58 && [1/2] Building C object CMakeFiles/cmTC_67b58.dir/src.c.o >[2/2] Linking C executable cmTC_67b58 > > >Source file was: >int main(void) { return 0; } >Performing C SOURCE FILE Test C_mavx2_mfma_COMPILE_WORKS succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_2738f && [1/2] Building C object CMakeFiles/cmTC_2738f.dir/src.c.o >[2/2] Linking C executable cmTC_2738f > > >Source file was: >#include<immintrin.h> >int main(){__m256i x=_mm256_set1_epi32(5);x=_mm256_add_epi32(x,x);return _mm256_movemask_epi8(x);} >Performing C++ SOURCE FILE Test CXX_mavx2_mfma_FLAG_ACCEPTED succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_b282e && [1/2] Building CXX object CMakeFiles/cmTC_b282e.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_b282e > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test CXX_mavx2_mfma_COMPILE_WORKS succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_d4c14 && [1/2] Building CXX object CMakeFiles/cmTC_d4c14.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_d4c14 > > >Source file was: >#include<immintrin.h> >int main(){__m256i x=_mm256_set1_epi32(5);x=_mm256_add_epi32(x,x);return _mm256_movemask_epi8(x);} >Performing C SOURCE FILE Test C_mavx512f_mfma_FLAG_ACCEPTED succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_05645 && [1/2] Building C object CMakeFiles/cmTC_05645.dir/src.c.o >[2/2] Linking C executable cmTC_05645 > > >Source file was: >int main(void) { return 0; } >Performing C SOURCE FILE Test C_mavx512f_mfma_COMPILE_WORKS succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_58bbf && [1/2] Building C object CMakeFiles/cmTC_58bbf.dir/src.c.o >[2/2] Linking C executable cmTC_58bbf > > >Source file was: >#include<immintrin.h> > int main(){__m512 x=_mm512_set1_ps(0.5); __m512 y=_mm512_fmadd_ps(x,x,x); > __m512i i = _mm512_set_epi32(15, 14, 13, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1, 0); > __mmask16 mask = (short)(0xffff); > int idata[16]; i = _mm512_maskz_permutexvar_epi32(mask, i, i); > _mm512_storeu_si512(idata, i); > return idata[0]*(int)(_mm512_cmp_ps_mask(x,y,_CMP_LT_OS));} >Performing C++ SOURCE FILE Test CXX_mavx512f_mfma_FLAG_ACCEPTED succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_12916 && [1/2] Building CXX object CMakeFiles/cmTC_12916.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_12916 > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test CXX_mavx512f_mfma_COMPILE_WORKS succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_4496a && [1/2] Building CXX object CMakeFiles/cmTC_4496a.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_4496a > > >Source file was: >#include<immintrin.h> > int main(){__m512 x=_mm512_set1_ps(0.5); __m512 y=_mm512_fmadd_ps(x,x,x); > __m512i i = _mm512_set_epi32(15, 14, 13, 12, 11, 10, 9, 8, 7, 6, 5, 4, 3, 2, 1, 0); > __mmask16 mask = (short)(0xffff); > int idata[16]; i = _mm512_maskz_permutexvar_epi32(mask, i, i); > _mm512_storeu_si512(idata, i); > return idata[0]*(int)(_mm512_cmp_ps_mask(x,y,_CMP_LT_OS));} >Performing C++ SOURCE FILE Test _Wno_unused_command_line_argument_FLAG_ACCEPTED succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_87806 && [1/2] Building CXX object CMakeFiles/cmTC_87806.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_87806 > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test _callconv_ succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_97334 && [1/2] Building CXX object CMakeFiles/cmTC_97334.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_97334 > > >Source file was: > >#pragma GCC diagnostic error "-Wignored-attributes" >int f(int i) {return i;} int main(void) {return f(0);} > >Determining if the function fftwf_plan_many_dft exists in the /usr/lib64/libfftw3f.so passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_0534f && [1/2] Building C object CMakeFiles/cmTC_0534f.dir/CheckFunctionExists.c.o >[2/2] Linking C executable cmTC_0534f > > > >Determining if the function fftwf_plan_many_dft_r2c exists in the /usr/lib64/libfftw3f.so passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_38e35 && [1/2] Building C object CMakeFiles/cmTC_38e35.dir/CheckFunctionExists.c.o >[2/2] Linking C executable cmTC_38e35 > > > >Determining if the function fftwf_plan_many_dft_c2r exists in the /usr/lib64/libfftw3f.so passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_e5115 && [1/2] Building C object CMakeFiles/cmTC_e5115.dir/CheckFunctionExists.c.o >[2/2] Linking C executable cmTC_e5115 > > > >Determining if the function fftwf_have_simd_sse2 exists in the /usr/lib64/libfftw3f.so passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_24aff && [1/2] Building C object CMakeFiles/cmTC_24aff.dir/CheckFunctionExists.c.o >[2/2] Linking C executable cmTC_24aff > > > >Performing C++ SOURCE FILE Test HAS_NO_STRINGOP_TRUNCATION succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_648dd && [1/2] Building CXX object CMakeFiles/cmTC_648dd.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_648dd > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test HAS_NO_REDUNDANT_MOVE succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_8f650 && [1/2] Building CXX object CMakeFiles/cmTC_8f650.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_8f650 > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test HAS_NO_UNUSED succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_66025 && [1/2] Building CXX object CMakeFiles/cmTC_66025.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_66025 > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test HAS_NO_UNUSED_PARAMETER succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_20dc1 && [1/2] Building CXX object CMakeFiles/cmTC_20dc1.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_20dc1 > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test HAS_NO_MISSING_DECLARATIONS succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_5e3a1 && [1/2] Building CXX object CMakeFiles/cmTC_5e3a1.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_5e3a1 > > >Source file was: >int main() { return 0; } >Performing C++ SOURCE FILE Test HAS_NO_NULL_CONVERSIONS succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_be7f2 && [1/2] Building CXX object CMakeFiles/cmTC_be7f2.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_be7f2 > > >Source file was: >int main() { return 0; } >Determining if the include file inttypes.h exists passed with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_94f5b && [1/2] Building C object CMakeFiles/cmTC_94f5b.dir/CheckIncludeFile.c.o >[2/2] Linking C executable cmTC_94f5b > > > >Performing C++ SOURCE FILE Test LMFIT_LINKS_OK succeeded with the following output: >Change Dir: /var/tmp/portage/sci-chemistry/gromacs-2022_beta1-r1/work/gromacs-2022_beta1_float/CMakeFiles/CMakeTmp > >Run Build Command(s):/usr/bin/ninja cmTC_c11f7 && [1/2] Building CXX object CMakeFiles/cmTC_c11f7.dir/src.cxx.o >[2/2] Linking CXX executable cmTC_c11f7 > > >Source file was: >#include <lmcurve.h> >int main(){lmcurve(0,0,0,0,0,0,0,0);}
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