sys-cluster:torque-6.0.4-r1:20210804-052125.log

sys-cluster:torque-6.0.4-r1:20210804-052125.log (text/plain), 16.82 KB, created by Toralf Förster on 2021-08-04 09:00:49 UTC

 * Package:    sys-cluster/torque-6.0.4-r1
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 crypt elibc_glibc kernel_linux syslog tk userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
hostname: Unknown host
>>> Unpacking source...
>>> Unpacking torque-6.0.4-gh-20170829.tar.gz to /var/tmp/portage/sys-cluster/torque-6.0.4-r1/work
>>> Unpacking torque-6.0.4-gcc7.patch to /var/tmp/portage/sys-cluster/torque-6.0.4-r1/work
unpack torque-6.0.4-gcc7.patch: file format not recognized. Ignoring.
>>> Source unpacked in /var/tmp/portage/sys-cluster/torque-6.0.4-r1/work
>>> Preparing source in /var/tmp/portage/sys-cluster/torque-6.0.4-r1/work/torque-6a0b37f85c7d644e9217cbab1542792d646f59a6 ...
 * Applying torque-6.0.4-gcc7.patch ...
patching file src/cmds/qdel.c
patching file src/cmds/qsub_functions.c
Hunk #1 succeeded at 3292 (offset -71 lines).
patching file src/cmds/qterm.c
Hunk #1 succeeded at 57 with fuzz 2 (offset -32 lines).
patching file src/include/array.h
patching file src/include/attribute.h
Hunk #1 succeeded at 503 (offset -9 lines).
patching file src/lib/Libattr/attr_fn_acl.c
patching file src/lib/Libattr/attr_fn_arst.c
Hunk #2 succeeded at 696 (offset -40 lines).
patching file src/lib/Libcmds/cvtdate.c
patching file src/lib/Libdis/disrsc.c
patching file src/lib/Libdis/disrsi.c
patching file src/lib/Libdis/disrsl.c
patching file src/lib/Libdis/disrss.c
patching file src/lib/Libnet/net_client.c
patching file src/lib/Libnet/net_common.c
Hunk #1 succeeded at 396 (offset -9 lines).
patching file src/resmom/checkpoint.c
patching file src/resmom/generate_alps_status.c
patching file src/resmom/linux/mom_mach.c
Hunk #2 succeeded at 1211 (offset -11 lines).
Hunk #3 succeeded at 1225 (offset -11 lines).
Hunk #4 succeeded at 1266 (offset -11 lines).
Hunk #5 succeeded at 1278 (offset -11 lines).
Hunk #6 succeeded at 1567 (offset -11 lines).
Hunk #7 succeeded at 1580 (offset -11 lines).
Hunk #8 succeeded at 1618 (offset -11 lines).
Hunk #9 succeeded at 1631 (offset -11 lines).
Hunk #10 succeeded at 1647 (offset -11 lines).
Hunk #11 succeeded at 5045 (offset 40 lines).
Hunk #12 succeeded at 5069 (offset 40 lines).
Hunk #13 succeeded at 5139 (offset 40 lines).
Hunk #14 succeeded at 5167 (offset 40 lines).
patching file src/resmom/mom_main.c
Hunk #1 succeeded at 1064 (offset -3 lines).
Hunk #2 succeeded at 6380 (offset -139 lines).
patching file src/resmom/mom_req_quejob.c
patching file src/resmom/mom_server.c
Hunk #1 succeeded at 1875 (offset -25 lines).
Hunk #2 succeeded at 1884 (offset -25 lines).
Hunk #3 succeeded at 1905 (offset -25 lines).
patching file src/resmom/parse_config.c
Hunk #1 succeeded at 2312 (offset -73 lines).
patching file src/resmom/requests.c
Hunk #1 succeeded at 1484 (offset -6 lines).
patching file src/scheduler.cc/samples/fifo/dedtime.c
patching file src/server/array_func.c
Hunk #2 succeeded at 93 (offset 3 lines).
Hunk #3 succeeded at 157 (offset 3 lines).
patching file src/server/array_func.h
patching file src/server/job_func.c
Hunk #1 succeeded at 2429 (offset 42 lines).
patching file src/server/node_attr_def.c
patching file src/server/node_manager.c
Hunk #1 succeeded at 934 (offset 10 lines).
patching file src/server/pbsd_init.c
Hunk #1 succeeded at 2655 (offset -12 lines).
patching file src/server/process_request.c
Hunk #1 succeeded at 777 (offset -18 lines).
Hunk #2 succeeded at 785 (offset -18 lines).
Hunk #3 succeeded at 825 (offset -18 lines).
Hunk #4 succeeded at 870 (offset -18 lines).
Hunk #5 succeeded at 954 (offset -18 lines).
patching file src/server/req_quejob.c
Hunk #1 succeeded at 324 (offset -2 lines).
patching file src/server/req_runjob.c
Hunk #1 succeeded at 1742 (offset 66 lines).
patching file src/server/req_stat.c
Hunk #1 succeeded at 243 (offset 2 lines).
patching file src/server/svr_chk_owner.c
Hunk #1 succeeded at 418 (offset 5 lines).
patching file src/test/catch_child/scaffolding.c
Hunk #1 succeeded at 1010 (offset -2 lines).
patching file src/test/geteusernam/scaffolding.c
Hunk #1 succeeded at 69 with fuzz 1 (offset 5 lines).
patching file src/test/node_manager/test_uut.c
Hunk #1 succeeded at 282 with fuzz 2 (offset -2 lines).
patching file src/test/pbs_log/scaffolding.c
patching file src/test/pbsd_main/scaffolding.c
Hunk #1 succeeded at 401 (offset -6 lines).
patching file src/test/process_alps_status/scaffolding.c
Hunk #1 succeeded at 739 (offset 26 lines).
patching file src/test/process_request/scaffolding.c
Hunk #2 succeeded at 481 (offset -8 lines).
patching file src/test/req_stat/scaffolding.c
Hunk #1 succeeded at 227 (offset 6 lines).
patching file src/test/svr_chk_owner/scaffolding.c
Hunk #1 succeeded at 74 (offset -5 lines).
patching file torque.setup.in
patching file src/server/svr_jobfunc.c
 [ ok ]
 * Applying torque-6.0.3-fix-emptystring-comparison.patch ...
 [ ok ]
 * Applying torque-6.0.4-no-openssl.patch ...
patching file README.building_40
patching file configure.ac
Hunk #1 succeeded at 787 with fuzz 1 (offset 42 lines).
patching file src/daemon_client/Makefile.am
Hunk #1 succeeded at 4 with fuzz 2 (offset -1 lines).
 [ ok ]
 * Applying torque-6.0.4-error_buf_overflow_prevent.patch ...
 [ ok ]
 * Running eautoreconf in '/var/tmp/portage/sys-cluster/torque-6.0.4-r1/work/torque-6a0b37f85c7d644e9217cbab1542792d646f59a6' ...
 * Running 'libtoolize --install --copy --force --automake' ...
 [ ok ]
 * Running 'aclocal -I buildutils' ...
 [ ok ]
 * Running 'autoconf --force' ...
 [ ok ]
 * Running 'autoheader' ...
 [ ok ]
 * Running 'automake --add-missing --copy --foreign --force-missing' ...
 [ ok ]
 * Running elibtoolize in: torque-6a0b37f85c7d644e9217cbab1542792d646f59a6/
 * Running elibtoolize in: torque-6a0b37f85c7d644e9217cbab1542792d646f59a6/buildutils/
 *   Applying portage/1.2.0 patch ...
 *   Applying sed/1.5.6 patch ...
 *   Applying as-needed/2.4.3 patch ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sys-cluster/torque-6.0.4-r1/work/torque-6a0b37f85c7d644e9217cbab1542792d646f59a6 ...
 * econf: updating torque-6a0b37f85c7d644e9217cbab1542792d646f59a6/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating torque-6a0b37f85c7d644e9217cbab1542792d646f59a6/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating torque-6a0b37f85c7d644e9217cbab1542792d646f59a6/buildutils/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating torque-6a0b37f85c7d644e9217cbab1542792d646f59a6/buildutils/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/torque-6.0.4-r1 --htmldir=/usr/share/doc/torque-6.0.4-r1/html --libdir=/usr/lib64 --enable-gui --enable-tcl-qstat --enable-syslog --disable-server --disable-drmaa --disable-munge-auth --disable-nvidia-gpus --with-rcp=scp --disable-cpuset --disable-cgroups --disable-autorun --disable-quickcommit --with-server-home=/var/spool/torque --with-environ=/etc/pbs_environment --with-default-server= --disable-gcc-warnings --disable-silent-rules --with-tcp-retry-limit=2 --without-loadlibfile
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking for x86_64-pc-linux-gnu-g++ option to enable C++11 features... none needed
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the compiler supports GNU C... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to enable C11 features... none needed
checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
checking the archiver (x86_64-pc-linux-gnu-ar) interface... ar
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B
checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-pc-linux-gnu-ar... (cached) x86_64-pc-linux-gnu-ar
checking for archiver @FILE support... @
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking for gawk... gawk
checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for x86_64-pc-linux-gnu-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for make... make
checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /bin/mkdir -p
checking whether make sets $(MAKE)... yes
checking whether make supports the include directive... yes (GNU style)
checking whether make supports nested variables... yes
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking dependency style of x86_64-pc-linux-gnu-g++... none
checking whether to enable maintainer-specific portions of Makefiles... no
fatal: not a git repository (or any parent up to mount point /var/tmp)
Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
cat: current_hash: No such file or directory
checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config
checking pkg-config is at least version 0.9.0... yes
checking PBS machine type... linux
checking whether make supports nested variables... (cached) yes
checking whether to turn on the AUTORUN_JOBS flag... no
checking whether to turn on the RESOURCEMAXDEFAULT flag... no
checking whether to turn on the QUICKCOMMIT flag... no
checking whether to include server and scheduler... no
checking whether to include the mom daemon... yes
checking whether to include the clients... yes
checking whether to build DRMAA lib... no
checking for ar... (cached) x86_64-pc-linux-gnu-ar
mv: cannot stat 'libtool': No such file or directory
./configure: line 18450: libtool: No such file or directory
mv: cannot stat 'libtool.old': No such file or directory
checking whether ln -s works... yes
checking for flex... flex
checking for lex output file root... lex.yy
checking for lex library... none needed
checking for library containing yywrap... no
checking whether yytext is a pointer... yes
checking for bison... bison -y
checking for gtbl... gtbl
checking for gpic... no
checking for pic... pic
checking for groff... groff
checking whether to turn on the compilation of DEBUG code... no
checking whether to compile with debugging symbols... DEBUG_SYMBOLS=yes
before tweak CFLAGS=-pipe -march=native -fno-diagnostics-color -O2 -fpermissive
mid tweak CFLAGS=-pipe -march=native -fno-diagnostics-color -fpermissive
after tweak CFLAGS=-g -pipe -march=native -fno-diagnostics-color -fpermissive
before tweak CXXFLAGS=-g -pipe -march=native -fno-diagnostics-color -O2
mid tweak CXXFLAGS=-g -pipe -march=native -fno-diagnostics-color
after tweak CXXFLAGS=-g -pipe -march=native -fno-diagnostics-color
checking whether to disable strict gcc warnings... yes
checking for stat64... yes
checking for open64... yes
checking for lseek64... yes
./configure: line 19092: ac_fn_c_check_member: command not found
checking for struct stat64.st_mode... yes
checking if largefile compiles (looking at you, OSX)... checking for pthread_create in -lpthread... no
configure: error: TORQUE needs pthreads in order to build

!!! Please attach the following file when seeking support:
!!! /var/tmp/portage/sys-cluster/torque-6.0.4-r1/work/torque-6a0b37f85c7d644e9217cbab1542792d646f59a6/config.log
 * ERROR: sys-cluster/torque-6.0.4-r1::gentoo failed (configure phase):
 *   econf failed
 * 
 * Call stack:
 *               ebuild.sh, line  127:  Called src_configure
 *             environment, line 3583:  Called econf '--enable-gui' '--enable-tcl-qstat' '--enable-syslog' '--disable-server' '--disable-drmaa' '--disable-munge-auth' '--disable-nvidia-gpus' '--with-rcp=scp' '--disable-cpuset' '--disable-cgroups' '--disable-autorun' '--disable-quickcommit' '--with-server-home=/var/spool/torque' '--with-environ=/etc/pbs_environment' '--with-default-server=' '--disable-gcc-warnings' '--disable-silent-rules' '--with-tcp-retry-limit=2' '--without-loadlibfile'
 *        phase-helpers.sh, line  711:  Called __helpers_die 'econf failed'
 *   isolated-functions.sh, line  112:  Called die
 * The specific snippet of code:
 *   		die "$@"
 * 
 * If you need support, post the output of `emerge --info '=sys-cluster/torque-6.0.4-r1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sys-cluster/torque-6.0.4-r1::gentoo'`.
 * The complete build log is located at '/var/log/portage/sys-cluster:torque-6.0.4-r1:20210804-052125.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sys-cluster/torque-6.0.4-r1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sys-cluster/torque-6.0.4-r1/temp/environment'.
 * Working directory: '/var/tmp/portage/sys-cluster/torque-6.0.4-r1/work/torque-6a0b37f85c7d644e9217cbab1542792d646f59a6'
 * S: '/var/tmp/portage/sys-cluster/torque-6.0.4-r1/work/torque-6a0b37f85c7d644e9217cbab1542792d646f59a6'