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Gentoo's Bugzilla – Attachment 702669 Details for
Bug 785961
[guru] sys-cluster/nanos6-2.5.1-r1 fails to compile
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build.log
build.log (text/plain), 17.58 KB, created by
Agostino Sarubbo
on 2021-04-27 06:56:31 UTC
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2021-04-27 06:56:31 UTC
Size:
17.58 KB
patch
obsolete
> * Package: sys-cluster/nanos6-2.5.1-r1 > * Repository: guru > * Maintainer: lssndrbarbieri@gmail.com > * Upstream: https://github.com/bsc-pm/nanos6/issues > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo-mirror/gentoo/commit/56dc1a6bdc197249e171f1b6888db7b2d2d4fbf7 (Tue Apr 27 05:50:16 UTC 2021) >@@@@@ END @@@@@ > > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://gitweb.gentoo.org/repo/proj/guru.git/commit/?id=e658726e12f9e5e9f583fd95ac71dc396a68e36c (Sun Apr 25 17:12:56 UTC 2021) >@@@@@ END @@@@@ > > > >emerge --info: >Portage 3.0.18 (python 3.9.4-final-0, default/linux/amd64/17.1, gcc-10.3.0, glibc-2.33, 5.4.0-1029-aws x86_64) >================================================================= >System uname: Linux-5.4.0-1029-aws-x86_64-Intel-R-_Xeon-R-_Platinum_8175M_CPU_@_2.50GHz-with-glibc2.33 >KiB Mem: 64359964 total, 43029224 free >KiB Swap: 0 total, 0 free >Timestamp of repository gentoo: Tue, 27 Apr 2021 05:50:16 +0000 >sh bash 5.1_p4 >ld GNU ld (Gentoo 2.36.1 p3) 2.36.1 >app-shells/bash: 5.1_p4::gentoo >dev-lang/perl: 5.32.1::gentoo >dev-lang/python: 2.7.18_p8::gentoo, 3.7.10_p1::gentoo, 3.8.9::gentoo, 3.9.4::gentoo >dev-lang/rust: 1.51.0-r2::gentoo >dev-util/cmake: 3.20.1::gentoo >sys-apps/baselayout: 2.7-r2::gentoo >sys-apps/openrc: 0.42.1-r1::gentoo >sys-apps/sandbox: 2.23::gentoo >sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r5::gentoo >sys-devel/automake: 1.16.3-r1::gentoo >sys-devel/binutils: 2.36.1-r1::gentoo >sys-devel/gcc: 10.3.0::gentoo >sys-devel/gcc-config: 2.4::gentoo >sys-devel/libtool: 2.4.6-r6::gentoo >sys-devel/make: 4.3::gentoo >sys-kernel/linux-headers: 5.12::gentoo (virtual/os-headers) >sys-libs/glibc: 2.33::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-verify-jobs: 1 > sync-rsync-verify-max-age: 24 > sync-rsync-verify-metamanifest: yes > sync-rsync-extra-opts: > >guru > location: /opt/guru > masters: gentoo > priority: 0 > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* GPL-3" >CBUILD="x86_64-pc-linux-gnu" >CC="x86_64-pc-linux-gnu-clang" >CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color" >CHOST="x86_64-pc-linux-gnu" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXX="x86_64-pc-linux-gnu-clang++" >CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color" >DISTDIR="/var/tmp/portage/sys-cluster/nanos6-2.5.1-r1/distdir" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" >FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches -fno-diagnostics-color" >GENTOO_MIRRORS="http://distfiles.gentoo.org" >LANG="C.UTF8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld" >MAKEOPTS="-j16" >PKGDIR="/root/.packages" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >USE="acl amd64 berkdb bzip2 cli crypt dri elogind fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl tcpd unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" USERLAND="GNU" >Unset: CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS, RUSTFLAGS > > > > > >emerge history: >2021-04-27T08:40:29 >>> x11-misc/util-macros-1.19.3 >2021-04-27T08:40:30 >>> dev-util/boost-build-1.75.0 >2021-04-27T08:40:30 >>> sys-process/numactl-2.0.14 >2021-04-27T08:40:31 >>> sys-apps/pciutils-3.7.0 >2021-04-27T08:40:31 >>> media-fonts/font-util-1.3.2-r1 >2021-04-27T08:40:45 >>> x11-libs/libpciaccess-0.16 >2021-04-27T08:40:38 >>> dev-libs/boost-1.75.0 >2021-04-27T08:40:50 >>> sys-apps/hwloc-2.3.0 > > > >>>> Unpacking source... >>>> Unpacking nanos6-2.5.1.tar.gz to /var/tmp/portage/sys-cluster/nanos6-2.5.1-r1/work >>>> Source unpacked in /var/tmp/portage/sys-cluster/nanos6-2.5.1-r1/work >>>> Preparing source in /var/tmp/portage/sys-cluster/nanos6-2.5.1-r1/work/nanos6-version-2.5.1 ... > * Running eautoreconf in '/var/tmp/portage/sys-cluster/nanos6-2.5.1-r1/work/nanos6-version-2.5.1' ... > * Running 'libtoolize --install --copy --force --automake' ... > [ ok ] > * Running 'aclocal -I m4' ... > [ ok ] > * Running 'autoconf --force' ... > [ ok ] > * Running 'autoheader' ... > [ ok ] > * Running 'automake --add-missing --copy --foreign --force-missing' ... > [ ok ] > * Running elibtoolize in: nanos6-version-2.5.1/ > * Running elibtoolize in: nanos6-version-2.5.1/config-aux/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sys-cluster/nanos6-2.5.1-r1/work/nanos6-version-2.5.1 ... > * econf: updating nanos6-version-2.5.1/config-aux/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating nanos6-version-2.5.1/config-aux/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating nanos6-version-2.5.1/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating nanos6-version-2.5.1/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/nanos6-2.5.1-r1 --htmldir=/usr/share/doc/nanos6-2.5.1-r1/html --with-sysroot=/ --libdir=/usr/lib64 --disable-chrono-arch --disable-openacc --disable-static --enable-shared --with-boost=/usr --with-libnuma=/usr --with-pic --without-k1om --without-nanos6-clang --without-nanos6-mercurium --without-pgi --disable-cluster --disable-extra-debug --disable-embed-code-changes --disable-execution-workflow --without-git --without-extrae --without-papi --without-libunwind >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking for a BSD-compatible install... /usr/lib/portage/python3.9/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking how to create a pax tar archive... gnutar >checking whether make supports nested variables... (cached) yes >checking for /sys/devices/system/cpu/cpu0/cache/index3/coherency_line_size... yes >checking the host cache line size... 64 >checking whether make supports the include directive... yes (GNU style) >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-clang >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-clang accepts -g... yes >checking for x86_64-pc-linux-gnu-clang option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-clang understands -c and -o together... yes >checking dependency style of x86_64-pc-linux-gnu-clang... none >checking for x86_64-pc-linux-gnu-ar... llvm-ar >checking the archiver (llvm-ar) interface... ar >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-clang... ld.lld >checking if the linker (ld.lld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... llvm-nm >checking the name lister (llvm-nm) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for ld.lld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... llvm-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... (cached) llvm-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... llvm-strip >checking for x86_64-pc-linux-gnu-ranlib... llvm-ranlib >checking command to parse llvm-nm output from x86_64-pc-linux-gnu-clang object... ok >checking for sysroot... / >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-clang -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-clang supports -fno-rtti -fno-exceptions... yes >checking for x86_64-pc-linux-gnu-clang option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-clang PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-clang static flag -static works... yes >checking if x86_64-pc-linux-gnu-clang supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-clang supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-clang linker (ld.lld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for git... no >checking the source code version... unknown unknown >checking for lsb_release... no >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-clang++ accepts -g... yes >checking dependency style of x86_64-pc-linux-gnu-clang++... none >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-clang++ -E >checking for ld used by x86_64-pc-linux-gnu-clang++... ld.lld -m elf_x86_64 >checking if the linker (ld.lld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-clang++ linker (ld.lld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-clang++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-clang++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-clang++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-clang++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-clang++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-clang++ linker (ld.lld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether x86_64-pc-linux-gnu-clang++ supports C++11 features by default... yes >checking the x86_64-pc-linux-gnu-clang version... clang version 12.0.0 >checking the x86_64-pc-linux-gnu-clang++ version... clang version 12.0.0 >checking for gawk... (cached) gawk >checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-clang >checking whether we are using the GNU C compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-clang accepts -g... (cached) yes >checking for x86_64-pc-linux-gnu-clang option to accept ISO C89... (cached) none needed >checking whether x86_64-pc-linux-gnu-clang understands -c and -o together... (cached) yes >checking dependency style of x86_64-pc-linux-gnu-clang... (cached) none >checking for x86_64-pc-linux-gnu-clang option to accept ISO C99... none needed >checking whether ln -s works... yes >checking whether make sets $(MAKE)... (cached) yes >checking if awk supports more than 32767 fields... yes >checking for perl... /usr/bin/perl >checking for C compiler vendor... clang >checking for C++ compiler vendor... clang >checking the Nanos6 Mercurium installation prefix... not found >configure: The following checks will be performed with Mercurium >configure: The following checks will no longer be performed with Mercurium >checking the Nanos6 Clang installation prefix... not found >checking for x86_64-pc-linux-gnu-doxygen... no >checking for doxygen... no >configure: WARNING: doxygen not found - will not generate any doxygen documentation >checking for x86_64-pc-linux-gnu-perl... no >checking for perl... /usr/bin/perl >checking for boostlib >= 1.59 (105900) includes in "/usr/include"... yes >checking for boostlib >= 1.59 (105900) lib path in "/usr/lib/x86_64-linux-gnu"... no >checking for boostlib >= 1.59 (105900) lib path in "/usr/lib64"... yes >checking for boostlib >= 1.59 (105900)... yes >checking whether x86_64-pc-linux-gnu-clang is Clang... yes >checking whether Clang needs flag to prevent "argument unused" warning when linking with -pthread... no >checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE >checking whether more special flags are required for pthreads... no >checking for PTHREAD_PRIO_INHERIT... yes >checking for stdlib.h... (cached) yes >checking for unistd.h... (cached) yes >checking for stdbool.h that conforms to C99... yes >checking for _Bool... yes >checking for size_t... yes >checking for C/C++ restrict keyword... __restrict >checking for library containing dlopen... -ldl >checking for dlinfo... yes >configure: WARNING: cannot find libunwind library directory >checking execinfo.h usability... yes >checking execinfo.h presence... yes >checking for execinfo.h... yes >checking libunwind.h usability... no >checking libunwind.h presence... no >checking for libunwind.h... no >checking for backtrace... yes >checking for backtrace in -lunwind... no >configure: WARNING: libunwind cannot be found. Will use backtrace from libc instead. >checking the libnuma installation prefix... /usr >checking numa.h usability... yes >checking numa.h presence... yes >checking for numa.h... yes >checking for numa_alloc_interleaved in -lnuma... no >configure: error: libnuma cannot be found > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/sys-cluster/nanos6-2.5.1-r1/work/nanos6-version-2.5.1/config.log > * ERROR: sys-cluster/nanos6-2.5.1-r1::guru failed (configure phase): > * econf failed > * > * Call stack: > * ebuild.sh, line 125: Called src_configure > * environment, line 1704: Called econf '--disable-chrono-arch' '--disable-openacc' '--disable-static' '--enable-shared' '--with-boost=/usr' '--with-libnuma=/usr' '--with-pic' '--without-k1om' '--without-nanos6-clang' '--without-nanos6-mercurium' '--without-pgi' '--disable-cluster' '--disable-extra-debug' '--disable-embed-code-changes' '--disable-execution-workflow' '--without-git' '--without-extrae' '--without-papi' '--without-libunwind' > * phase-helpers.sh, line 680: Called __helpers_die 'econf failed' > * isolated-functions.sh, line 112: Called die > * The specific snippet of code: > * die "$@" > * > * If you need support, post the output of `emerge --info '=sys-cluster/nanos6-2.5.1-r1::guru'`, > * the complete build log and the output of `emerge -pqv '=sys-cluster/nanos6-2.5.1-r1::guru'`. > * The complete build log is located at '/var/log/emerge-log/build/sys-cluster/nanos6-2.5.1-r1:20210427-064102.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sys-cluster/nanos6-2.5.1-r1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sys-cluster/nanos6-2.5.1-r1/temp/environment'. > * Working directory: '/var/tmp/portage/sys-cluster/nanos6-2.5.1-r1/work/nanos6-version-2.5.1' > * S: '/var/tmp/portage/sys-cluster/nanos6-2.5.1-r1/work/nanos6-version-2.5.1' >
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