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Gentoo's Bugzilla – Attachment 688866 Details for
Bug 773544
sci-libs/cantera-2.5.1 fails tests
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build.log
build.log (text/plain), 161.14 KB, created by
Agostino Sarubbo
on 2021-03-01 10:23:44 UTC
(
hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Agostino Sarubbo
Created:
2021-03-01 10:23:44 UTC
Size:
161.14 KB
patch
obsolete
> * Package: sci-libs/cantera-2.5.1 > * Repository: gentoo > * Maintainer: torokhov-s-a@yandex.ru proxy-maint@gentoo.org > * USE: abi_x86_64 amd64 cti elibc_glibc fortran kernel_linux python python_single_target_python3_8 test userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox test userpriv usersandbox > > >@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@ >This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix; >This ebuild was merged at the following commit: >https://github.com/gentoo/gentoo/commit/90169acaf310a7464980e089574f116b3b2ce242 (Mon Mar 1 08:25:57 UTC 2021) >@@@@@ END @@@@@ > > > >emerge --info: >Portage 3.0.16 (python 3.9.2-final-0, default/linux/amd64/17.1, gcc-10.2.0, glibc-2.32-r8, 5.4.0-1029-aws x86_64) >================================================================= >System uname: Linux-5.4.0-1029-aws-x86_64-Intel-R-_Xeon-R-_Platinum_8124M_CPU_@_3.00GHz-with-glibc2.32 >KiB Mem: 71926568 total, 51589360 free >KiB Swap: 0 total, 0 free >sh bash 5.1_p4 >ld GNU ld (Gentoo 2.35.2 p1) 2.35.2 >app-shells/bash: 5.1_p4::gentoo >dev-lang/perl: 5.32.1::gentoo >dev-lang/python: 2.7.18_p7::gentoo, 3.7.10::gentoo, 3.8.8::gentoo, 3.9.2::gentoo >dev-util/cmake: 3.19.6::gentoo >dev-util/pkgconfig: 0.29.2::gentoo >sys-apps/baselayout: 2.7-r1::gentoo >sys-apps/openrc: 0.42.1-r1::gentoo >sys-apps/sandbox: 2.20::gentoo >sys-devel/autoconf: 2.13-r1::gentoo, 2.69-r5::gentoo >sys-devel/automake: 1.16.3-r1::gentoo >sys-devel/binutils: 2.35.2::gentoo >sys-devel/gcc: 10.2.0-r5::gentoo >sys-devel/gcc-config: 2.4::gentoo >sys-devel/libtool: 2.4.6-r6::gentoo >sys-devel/make: 4.3::gentoo >sys-kernel/linux-headers: 5.11::gentoo (virtual/os-headers) >sys-libs/glibc: 2.32-r8::gentoo >Repositories: > >gentoo > location: /usr/portage > sync-type: rsync > sync-uri: rsync://rsync.gentoo.org/gentoo-portage > priority: -1000 > sync-rsync-extra-opts: > sync-rsync-verify-metamanifest: yes > sync-rsync-verify-max-age: 24 > sync-rsync-verify-jobs: 1 > >ACCEPT_KEYWORDS="amd64 ~amd64" >ACCEPT_LICENSE="* BSD" >CBUILD="x86_64-pc-linux-gnu" >CFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches" >CHOST="x86_64-pc-linux-gnu" >CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt" >CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo" >CXXFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches" >DISTDIR="/var/tmp/portage/sci-libs/cantera-2.5.1/distdir" >EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b" >ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR" >FCFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches" >FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs binpkg-multi-instance buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr" >FFLAGS="-O2 -pipe -march=x86-64 -frecord-gcc-switches" >GENTOO_MIRRORS="http://distfiles.gentoo.org" >LANG="en_US.utf8" >LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0" >MAKEOPTS="-j36" >PKGDIR="/root/.packages" >PORTAGE_CONFIGROOT="/" >PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git" >PORTAGE_TMPDIR="/var/tmp" >USE="acl amd64 berkdb bzip2 cli crypt cti dri elogind fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre python readline seccomp split-usr ssl tcpd test unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" PYTHON_SINGLE_TARGET="python3_8" USERLAND="GNU" >Unset: CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS > > > > > >emerge history: >2021-03-01T10:07:26 >>> dev-util/boost-build-1.75.0 >2021-03-01T10:07:27 >>> virtual/fortran-0 >2021-03-01T10:07:27 >>> dev-cpp/yaml-cpp-0.6.3-r3 >2021-03-01T10:07:28 >>> dev-cpp/eigen-3.3.9 >2021-03-01T10:07:27 >>> dev-python/cython-0.29.22 >2021-03-01T10:07:28 >>> dev-libs/libfmt-7.1.3 >2021-03-01T10:07:29 >>> dev-python/ruamel-yaml-clib-0.2.2-r1 >2021-03-01T10:07:28 >>> dev-util/scons-4.1.0-r1 >2021-03-01T10:07:38 >>> sci-libs/sundials-5.2.0 >2021-03-01T10:07:47 >>> dev-python/ruamel-yaml-0.16.12-r1 >2021-03-01T10:07:44 >>> dev-python/numpy-1.19.5 >2021-03-01T10:07:37 >>> dev-libs/boost-1.75.0 >2021-03-01T10:08:11 >>> sci-libs/cantera-2.5.1 >2021-03-01T10:09:43 >>> dev-lang/swig-4.0.2 >2021-03-01T10:09:44 >>> sci-libs/lapack-3.9.0-r1 >2021-03-01T10:09:45 >>> dev-cpp/gtest-1.10.0_p20200702 >2021-03-01T10:09:46 >>> sci-libs/hdf5-1.10.5-r1 >2021-03-01T10:09:48 >>> dev-python/pytz-2021.1 >2021-03-01T10:09:47 >>> dev-python/six-1.15.0-r1 >2021-03-01T10:09:48 >>> dev-python/olefile-0.46-r1 >2021-03-01T10:09:49 >>> dev-python/toml-0.10.2 >2021-03-01T10:09:50 >>> dev-python/pybind11-2.6.2 >2021-03-01T10:09:51 >>> virtual/lapack-3.8 >2021-03-01T10:09:52 >>> virtual/cblas-3.8 >2021-03-01T10:09:53 >>> virtual/blas-3.8 >2021-03-01T10:10:04 >>> dev-python/python-dateutil-2.8.1-r2 >2021-03-01T10:10:06 >>> dev-python/pillow-8.1.0 >2021-03-01T10:10:08 >>> dev-python/pkgconfig-1.5.2 >2021-03-01T10:10:08 >>> dev-python/pyproject2setuppy-10 >2021-03-01T10:10:14 >>> sci-libs/arpack-3.8.0 >2021-03-01T10:10:12 >>> dev-python/numpy-1.19.5 >2021-03-01T10:10:35 >>> dev-python/numexpr-2.7.2_p1 >2021-03-01T10:10:36 >>> dev-python/scipy-1.6.1 >2021-03-01T10:10:50 >>> dev-python/bottleneck-1.3.2 >2021-03-01T10:10:35 >>> dev-python/h5py-2.10.0-r1 >2021-03-01T10:10:53 >>> dev-python/pandas-1.2.2 > > > * Using following Fortran compiler: > * F77: x86_64-pc-linux-gnu-gfortran > * FC: x86_64-pc-linux-gnu-gfortran > * Using python3.8 to build >>>> Unpacking source... >>>> Unpacking cantera-2.5.1.tar.gz to /var/tmp/portage/sci-libs/cantera-2.5.1/work >>>> Source unpacked in /var/tmp/portage/sci-libs/cantera-2.5.1/work >>>> Preparing source in /var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1 ... > * Applying cantera-2.5.0_env.patch ... > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1 ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1 ... >scons -j36 build CC=x86_64-pc-linux-gnu-gcc CXX=x86_64-pc-linux-gnu-g++ cc_flags=-O2 -pipe -march=x86-64 -frecord-gcc-switches cxx_flags=-std=c++11 debug=no FORTRAN=x86_64-pc-linux-gnu-gfortran FORTRANFLAGS=-O2 -pipe -march=x86-64 -frecord-gcc-switches optimize_flags=-Wno-inline renamed_shared_libraries=no use_pch=no system_fmt=y system_sundials=y system_eigen=y system_yamlcpp=y env_vars=all extra_inc_dirs=/usr/include/eigen3 f90_interface=y python_package=full python_cmd=python3.8 prefix=/usr >scons: Reading SConscript files ... >INFO: SCons is using the following Python interpreter: /usr/bin/python3.8 >Configuration variables read from 'cantera.conf' and command line: > CXX = 'x86_64-pc-linux-gnu-g++' > CC = 'x86_64-pc-linux-gnu-gcc' > prefix = '/usr' > python_package = 'full' > python_cmd = 'python3.8' > f90_interface = 'y' > FORTRAN = 'x86_64-pc-linux-gnu-gfortran' > FORTRANFLAGS = '-O2 -pipe -march=x86-64 -frecord-gcc-switches' > system_eigen = 'y' > system_fmt = 'y' > system_yamlcpp = 'y' > system_sundials = 'y' > env_vars = 'all' > use_pch = False > cxx_flags = '-std=c++11' > cc_flags = '-O2 -pipe -march=x86-64 -frecord-gcc-switches' > optimize_flags = '-Wno-inline' > debug = False > extra_inc_dirs = '/usr/include/eigen3' > renamed_shared_libraries = False > >Checking for C++ header file cmath... yes >Checking for C++ header file fmt/ostream.h... yes >INFO: Using system installation of fmt library. >INFO: Found fmt version 7.1.3 >Checking for C++ header file yaml-cpp/yaml.h... yes >INFO: Using system installation of yaml-cpp library. >Checking for C++ header file gtest/gtest.h... yes >Checking for C++ header file gmock/gmock.h... yes >INFO: Using system installation of Googletest >Checking for C++ header file Eigen/Dense... yes >INFO: Using system installation of Eigen. >INFO: Found Eigen version 3.3.9 >Checking whether __GLIBCXX__ is declared... yes >Checking whether __clang__ is declared... no >Checking for C++ header file omp.h... yes >INFO: Found Boost version 1.75 >Checking whether boost::core::demangle is declared... yes >Checking for CVodeCreate(CV_BDF, CV_NEWTON) in C++ library sundials_cvodes... no >Checking for CVodeCreate(CV_BDF) in C++ library sundials_cvodes... yes >Checking for double x; log(x) in C library None... no >INFO: Using system installation of Sundials version 5.2.0. >Checking whether SUNDIALS_BLAS_LAPACK is declared... no >INFO: Using 'x86_64-pc-linux-gnu-gfortran' to build the Fortran 90 interface >INFO: Using NumPy version 1.19.5. >INFO: Using Cython version 0.29.22. >INFO: Building the full Python package for Python 3.8 >target.dir:/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/lib >target.dir:/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/lib >target.dir:/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/lib >target.dir:/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/lib >scons: done reading SConscript files. >scons: Building targets ... >Copy("build/data/KOH.cti", "data/inputs/KOH.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/KOH.cti build/data/KOH.xml >Copy("build/data/air.cti", "data/inputs/air.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/air.cti build/data/air.xml >Copy("build/data/airNASA9.cti", "data/inputs/airNASA9.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/airNASA9.cti build/data/airNASA9.xml >Copy("build/data/argon.cti", "data/inputs/argon.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/argon.cti build/data/argon.xml >Copy("build/data/diamond.cti", "data/inputs/diamond.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/diamond.cti build/data/diamond.xml >Copy("build/data/graphite.cti", "data/inputs/graphite.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/graphite.cti build/data/graphite.xml >Copy("build/data/gri30.cti", "data/inputs/gri30.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/gri30.cti build/data/gri30.xml >Copy("build/data/gri30_highT.cti", "data/inputs/gri30_highT.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/gri30_highT.cti build/data/gri30_highT.xml >Copy("build/data/gri30_ion.cti", "data/inputs/gri30_ion.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/gri30_ion.cti build/data/gri30_ion.xml >Copy("build/data/h2o2.cti", "data/inputs/h2o2.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/h2o2.cti build/data/h2o2.xml >Copy("build/data/liquidvapor.cti", "data/inputs/liquidvapor.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/liquidvapor.cti build/data/liquidvapor.xml >Copy("build/data/lithium_ion_battery.cti", "data/inputs/lithium_ion_battery.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/lithium_ion_battery.cti build/data/lithium_ion_battery.xml >Copy("build/data/methane_pox_on_pt.cti", "data/inputs/methane_pox_on_pt.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/methane_pox_on_pt.cti build/data/methane_pox_on_pt.xml >Copy("build/data/nDodecane_Reitz.cti", "data/inputs/nDodecane_Reitz.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/nDodecane_Reitz.cti build/data/nDodecane_Reitz.xml >Copy("build/data/nasa.cti", "data/inputs/nasa.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/nasa.cti build/data/nasa.xml >Copy("build/data/nasa_condensed.cti", "data/inputs/nasa_condensed.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/nasa_condensed.cti build/data/nasa_condensed.xml >Copy("build/data/nasa_gas.cti", "data/inputs/nasa_gas.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/nasa_gas.cti build/data/nasa_gas.xml >Copy("build/data/ohn.cti", "data/inputs/ohn.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/ohn.cti build/data/ohn.xml >Copy("build/data/ptcombust.cti", "data/inputs/ptcombust.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/ptcombust.cti build/data/ptcombust.xml >Copy("build/data/silane.cti", "data/inputs/silane.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/silane.cti build/data/silane.xml >Copy("build/data/silicon.cti", "data/inputs/silicon.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/silicon.cti build/data/silicon.xml >Copy("build/data/silicon_carbide.cti", "data/inputs/silicon_carbide.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/silicon_carbide.cti build/data/silicon_carbide.xml >Copy("build/data/sofc.cti", "data/inputs/sofc.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/sofc.cti build/data/sofc.xml >Copy("build/data/water.cti", "data/inputs/water.cti") >"python3.8" interfaces/cython/cantera/ctml_writer.py data/inputs/water.cti build/data/water.xml >Copy("build/data/critProperties.xml", "data/inputs/critProperties.xml") >Copy("build/data/elements.xml", "data/inputs/elements.xml") >Copy("build/data/KOH.yaml", "data/KOH.yaml") >Copy("build/data/air.yaml", "data/air.yaml") >Copy("build/data/airNASA9.yaml", "data/airNASA9.yaml") >Copy("build/data/argon.yaml", "data/argon.yaml") >Copy("build/data/diamond.yaml", "data/diamond.yaml") >Copy("build/data/graphite.yaml", "data/graphite.yaml") >Copy("build/data/gri30.yaml", "data/gri30.yaml") >Copy("build/data/gri30_highT.yaml", "data/gri30_highT.yaml") >Copy("build/data/gri30_ion.yaml", "data/gri30_ion.yaml") >Copy("build/data/h2o2.yaml", "data/h2o2.yaml") >Copy("build/data/liquidvapor.yaml", "data/liquidvapor.yaml") >Copy("build/data/lithium_ion_battery.yaml", "data/lithium_ion_battery.yaml") >Copy("build/data/methane_pox_on_pt.yaml", "data/methane_pox_on_pt.yaml") >Copy("build/data/nDodecane_Reitz.yaml", "data/nDodecane_Reitz.yaml") >Copy("build/data/nasa.yaml", "data/nasa.yaml") >Copy("build/data/nasa_condensed.yaml", "data/nasa_condensed.yaml") >Copy("build/data/nasa_gas.yaml", "data/nasa_gas.yaml") >Copy("build/data/ohn.yaml", "data/ohn.yaml") >Copy("build/data/ptcombust.yaml", "data/ptcombust.yaml") >Copy("build/data/silane.yaml", "data/silane.yaml") >Copy("build/data/silicon.yaml", "data/silicon.yaml") >Copy("build/data/silicon_carbide.yaml", "data/silicon_carbide.yaml") >Copy("build/data/sofc.yaml", "data/sofc.yaml") >Copy("build/data/water.yaml", "data/water.yaml") >Copy("build/data/sample-data/LiC6_electrodebulk.yaml", "data/sample-data/LiC6_electrodebulk.yaml") >generate_license(["build/ext/LICENSE.txt"], ["License.txt", "ext/libexecstream/doc/license.txt"]) >ConfigBuilder(["build/src/config.h.build"], ["include/cantera/base/config.h.in"]) >Generating build/src/config.h.build with the following settings: > CANTERA_SHORT_VERSION "2.5" > CANTERA_VERSION "2.5.1" > CT_SUNDIALS_USE_LAPACK 0 > CT_SUNDIALS_VERSION 52 > CT_USE_DEMANGLE 1 > CT_USE_SYSTEM_EIGEN 1 > CT_USE_SYSTEM_FMT 1 > CT_USE_SYSTEM_YAMLCPP 1 > FTN_TRAILING_UNDERSCORE 1 > LAPACK_FTN_STRING_LEN_AT_END 1 > LAPACK_FTN_TRAILING_UNDERSCORE 1 > LAPACK_NAMES_LOWERCASE 1 > NEEDS_GENERIC_TEMPL_STATIC_DECL *undefined* >x86_64-pc-linux-gnu-g++ -o build/ext/libexecstream/exec-stream.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -w -fPIC -DNDEBUG -I/usr/include/eigen3 ext/libexecstream/exec-stream.cpp >Install file: "build/data/KOH.cti" as "interfaces/cython/cantera/data/KOH.cti" >Install file: "build/data/KOH.xml" as "interfaces/cython/cantera/data/KOH.xml" >Install file: "build/data/KOH.yaml" as "interfaces/cython/cantera/data/KOH.yaml" >Install file: "build/data/air.xml" as "interfaces/cython/cantera/data/air.xml" >Install file: "build/data/air.cti" as "interfaces/cython/cantera/data/air.cti" >Install file: "build/data/air.yaml" as "interfaces/cython/cantera/data/air.yaml" >Install file: "build/data/airNASA9.yaml" as "interfaces/cython/cantera/data/airNASA9.yaml" >Install file: "build/data/airNASA9.cti" as "interfaces/cython/cantera/data/airNASA9.cti" >Install file: "build/data/airNASA9.xml" as "interfaces/cython/cantera/data/airNASA9.xml" >Install file: "build/data/argon.cti" as "interfaces/cython/cantera/data/argon.cti" >Install file: "build/data/argon.yaml" as "interfaces/cython/cantera/data/argon.yaml" >Install file: "build/data/argon.xml" as "interfaces/cython/cantera/data/argon.xml" >Install file: "build/data/critProperties.xml" as "interfaces/cython/cantera/data/critProperties.xml" >Install file: "build/data/diamond.cti" as "interfaces/cython/cantera/data/diamond.cti" >Install file: "build/data/diamond.yaml" as "interfaces/cython/cantera/data/diamond.yaml" >Install file: "build/data/elements.xml" as "interfaces/cython/cantera/data/elements.xml" >Install file: "build/data/diamond.xml" as "interfaces/cython/cantera/data/diamond.xml" >Install file: "build/data/graphite.cti" as "interfaces/cython/cantera/data/graphite.cti" >Install file: "build/data/graphite.xml" as "interfaces/cython/cantera/data/graphite.xml" >Install file: "build/data/graphite.yaml" as "interfaces/cython/cantera/data/graphite.yaml" >Copy("include/cantera/base/config.h", "build/src/config.h.build") >Install file: "build/data/gri30.cti" as "interfaces/cython/cantera/data/gri30.cti" >Install file: "build/data/gri30.xml" as "interfaces/cython/cantera/data/gri30.xml" >Install file: "build/data/gri30.yaml" as "interfaces/cython/cantera/data/gri30.yaml" >Install file: "build/data/gri30_ion.cti" as "interfaces/cython/cantera/data/gri30_ion.cti" >Install file: "build/data/gri30_highT.cti" as "interfaces/cython/cantera/data/gri30_highT.cti" >Install file: "build/data/gri30_highT.xml" as "interfaces/cython/cantera/data/gri30_highT.xml" >Install file: "build/data/h2o2.yaml" as "interfaces/cython/cantera/data/h2o2.yaml" >Install file: "build/data/h2o2.cti" as "interfaces/cython/cantera/data/h2o2.cti" >Install file: "build/data/gri30_ion.yaml" as "interfaces/cython/cantera/data/gri30_ion.yaml" >Install file: "build/data/h2o2.xml" as "interfaces/cython/cantera/data/h2o2.xml" >Install file: "build/data/liquidvapor.cti" as "interfaces/cython/cantera/data/liquidvapor.cti" >Install file: "build/data/gri30_highT.yaml" as "interfaces/cython/cantera/data/gri30_highT.yaml" >Install file: "build/data/gri30_ion.xml" as "interfaces/cython/cantera/data/gri30_ion.xml" >Install file: "build/data/liquidvapor.yaml" as "interfaces/cython/cantera/data/liquidvapor.yaml" >Install file: "build/data/lithium_ion_battery.cti" as "interfaces/cython/cantera/data/lithium_ion_battery.cti" >Install file: "build/data/lithium_ion_battery.xml" as "interfaces/cython/cantera/data/lithium_ion_battery.xml" >Install file: "build/data/liquidvapor.xml" as "interfaces/cython/cantera/data/liquidvapor.xml" >Install file: "build/data/methane_pox_on_pt.cti" as "interfaces/cython/cantera/data/methane_pox_on_pt.cti" >Install file: "build/data/lithium_ion_battery.yaml" as "interfaces/cython/cantera/data/lithium_ion_battery.yaml" >Install file: "build/data/methane_pox_on_pt.xml" as "interfaces/cython/cantera/data/methane_pox_on_pt.xml" >Install file: "build/data/nDodecane_Reitz.cti" as "interfaces/cython/cantera/data/nDodecane_Reitz.cti" >Install file: "build/data/methane_pox_on_pt.yaml" as "interfaces/cython/cantera/data/methane_pox_on_pt.yaml" >Install file: "build/data/nDodecane_Reitz.xml" as "interfaces/cython/cantera/data/nDodecane_Reitz.xml" >Install file: "build/data/nasa.cti" as "interfaces/cython/cantera/data/nasa.cti" >Install file: "build/data/nasa.xml" as "interfaces/cython/cantera/data/nasa.xml" >Install file: "build/data/nasa.yaml" as "interfaces/cython/cantera/data/nasa.yaml" >Install file: "build/data/nDodecane_Reitz.yaml" as "interfaces/cython/cantera/data/nDodecane_Reitz.yaml" >Install file: "build/data/nasa_condensed.cti" as "interfaces/cython/cantera/data/nasa_condensed.cti" >Install file: "build/data/nasa_condensed.yaml" as "interfaces/cython/cantera/data/nasa_condensed.yaml" >Install file: "build/data/nasa_gas.xml" as "interfaces/cython/cantera/data/nasa_gas.xml" >Install file: "build/data/nasa_gas.yaml" as "interfaces/cython/cantera/data/nasa_gas.yaml" >Install file: "build/data/nasa_condensed.xml" as "interfaces/cython/cantera/data/nasa_condensed.xml" >Install file: "build/data/ohn.cti" as "interfaces/cython/cantera/data/ohn.cti" >Install file: "build/data/nasa_gas.cti" as "interfaces/cython/cantera/data/nasa_gas.cti" >x86_64-pc-linux-gnu-g++ -o build/src/thermo/PDSS_IonsFromNeutral.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/PDSS_IonsFromNeutral.cpp >x86_64-pc-linux-gnu-g++ -o build/src/numerics/BandMatrix.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/numerics/BandMatrix.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/WaterPropsIAPWS.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/WaterPropsIAPWS.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_setMolesLinProg.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_setMolesLinProg.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/MargulesVPSSTP.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/MargulesVPSSTP.cpp >x86_64-pc-linux-gnu-g++ -o build/src/zeroD/ReactorBase.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/zeroD/ReactorBase.cpp >x86_64-pc-linux-gnu-g++ -o build/src/base/ctexceptions.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/base/ctexceptions.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/BinarySolutionTabulatedThermo.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/BinarySolutionTabulatedThermo.cpp >x86_64-pc-linux-gnu-g++ -o build/src/oneD/refine.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/oneD/refine.cpp >x86_64-pc-linux-gnu-g++ -o build/src/clib/ctrpath.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/clib/ctrpath.cpp >x86_64-pc-linux-gnu-g++ -o build/src/transport/GasTransport.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/transport/GasTransport.cpp >x86_64-pc-linux-gnu-g++ -o build/src/kinetics/ImplicitSurfChem.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/kinetics/ImplicitSurfChem.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/MultiPhaseEquil.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/MultiPhaseEquil.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/PDSS_IdealGas.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/PDSS_IdealGas.cpp >x86_64-pc-linux-gnu-gfortran -o build/src/fortran/fct_interface.os -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fPIC -Ibuild/src/fortran -Isrc/fortran -Isrc/fortran -Jbuild/src/fortran src/fortran/fct_interface.f90 >x86_64-pc-linux-gnu-g++ -o build/src/thermo/WaterProps.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/WaterProps.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_rxnadj.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_rxnadj.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/LatticeSolidPhase.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/LatticeSolidPhase.cpp >x86_64-pc-linux-gnu-g++ -o build/src/zeroD/Reactor.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/zeroD/Reactor.cpp >x86_64-pc-linux-gnu-g++ -o build/src/base/ct2ctml.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/base/ct2ctml.cpp >x86_64-pc-linux-gnu-g++ -o build/src/oneD/StFlow.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/oneD/StFlow.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_solve_TP.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_solve_TP.cpp >x86_64-pc-linux-gnu-g++ -o build/src/clib/ctreactor.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/clib/ctreactor.cpp >x86_64-pc-linux-gnu-g++ -o build/src/transport/DustyGasTransport.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/transport/DustyGasTransport.cpp >x86_64-pc-linux-gnu-g++ -o build/src/kinetics/Group.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/kinetics/Group.cpp >x86_64-pc-linux-gnu-g++ -o build/src/numerics/ResidJacEval.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/numerics/ResidJacEval.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/MultiPhase.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/MultiPhase.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/PDSS_HKFT.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/PDSS_HKFT.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/VPStandardStateTP.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/VPStandardStateTP.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_report.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_report.cpp >x86_64-pc-linux-gnu-g++ -o build/src/transport/WaterTransport.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/transport/WaterTransport.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/LatticePhase.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/LatticePhase.cpp >x86_64-pc-linux-gnu-g++ -o build/src/oneD/Sim1D.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/oneD/Sim1D.cpp >x86_64-pc-linux-gnu-g++ -o build/src/clib/ctonedim.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/clib/ctonedim.cpp >x86_64-pc-linux-gnu-g++ -o build/src/kinetics/GasKinetics.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/kinetics/GasKinetics.cpp >x86_64-pc-linux-gnu-g++ -o build/src/numerics/ODE_integrators.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/numerics/ODE_integrators.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/ChemEquil.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/ChemEquil.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/PDSS_ConstVol.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/PDSS_ConstVol.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/ThermoPhase.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/ThermoPhase.cpp >x86_64-pc-linux-gnu-gfortran -o build/src/fortran/fctxml_interface.os -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fPIC -Ibuild/src/fortran -Isrc/fortran -Isrc/fortran -Jbuild/src/fortran src/fortran/fctxml_interface.f90 >x86_64-pc-linux-gnu-gfortran -o build/src/fortran/cantera_xml.os -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fPIC -Ibuild/src/fortran -Isrc/fortran -Isrc/fortran -Jbuild/src/fortran src/fortran/cantera_xml.f90 >x86_64-pc-linux-gnu-gfortran -o build/src/fortran/cantera_thermo.os -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fPIC -Ibuild/src/fortran -Isrc/fortran -Isrc/fortran -Jbuild/src/fortran src/fortran/cantera_thermo.f90 >x86_64-pc-linux-gnu-gfortran -o build/src/fortran/cantera_transport.os -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fPIC -Ibuild/src/fortran -Isrc/fortran -Isrc/fortran -Jbuild/src/fortran src/fortran/cantera_transport.f90 >x86_64-pc-linux-gnu-gfortran -o build/src/fortran/cantera_kinetics.os -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fPIC -Ibuild/src/fortran -Isrc/fortran -Isrc/fortran -Jbuild/src/fortran src/fortran/cantera_kinetics.f90 >x86_64-pc-linux-gnu-gfortran -o build/src/fortran/cantera_iface.os -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fPIC -Ibuild/src/fortran -Isrc/fortran -Isrc/fortran -Jbuild/src/fortran src/fortran/cantera_iface.f90 >x86_64-pc-linux-gnu-gfortran -o build/src/fortran/cantera_funcs.os -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fPIC -Ibuild/src/fortran -Isrc/fortran -Isrc/fortran -Jbuild/src/fortran src/fortran/cantera_funcs.f90 >x86_64-pc-linux-gnu-gfortran -o build/src/fortran/cantera.os -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -fPIC -Ibuild/src/fortran -Isrc/fortran -Isrc/fortran -Jbuild/src/fortran src/fortran/cantera.f90 >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_prob.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_prob.cpp >x86_64-pc-linux-gnu-g++ -o build/src/transport/TransportParams.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/transport/TransportParams.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/IonsFromNeutralVPSSTP.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/IonsFromNeutralVPSSTP.cpp >x86_64-pc-linux-gnu-g++ -o build/src/oneD/OneDim.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/oneD/OneDim.cpp >x86_64-pc-linux-gnu-g++ -o build/src/clib/ctmultiphase.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/clib/ctmultiphase.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/StoichSubstance.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/StoichSubstance.cpp >x86_64-pc-linux-gnu-g++ -o build/src/kinetics/FalloffFactory.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/kinetics/FalloffFactory.cpp >x86_64-pc-linux-gnu-g++ -o build/src/numerics/IDA_Solver.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/numerics/IDA_Solver.cpp >x86_64-pc-linux-gnu-g++ -o build/src/tpx/Heptane.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/tpx/Heptane.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/PDSSFactory.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/PDSSFactory.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/ThermoFactory.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/ThermoFactory.cpp >x86_64-pc-linux-gnu-g++ -o build/src/zeroD/IdealGasReactor.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/zeroD/IdealGasReactor.cpp >x86_64-pc-linux-gnu-g++ -o build/src/transport/TransportFactory.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/transport/TransportFactory.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_prep.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_prep.cpp >x86_64-pc-linux-gnu-g++ -o build/src/base/clockWC.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/base/clockWC.cpp >x86_64-pc-linux-gnu-g++ -o build/src/kinetics/solveSP.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/kinetics/solveSP.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/IdealSolnGasVPSS.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/IdealSolnGasVPSS.cpp >x86_64-pc-linux-gnu-g++ -o build/src/base/global.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -DGIT_COMMIT=\"unknown\" -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/base/global.cpp >x86_64-pc-linux-gnu-g++ -o build/src/oneD/MultiNewton.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/oneD/MultiNewton.cpp >x86_64-pc-linux-gnu-g++ -o build/src/clib/ctfunc.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/clib/ctfunc.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/SpeciesThermoInterpType.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/SpeciesThermoInterpType.cpp >x86_64-pc-linux-gnu-g++ -o build/src/kinetics/Falloff.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/kinetics/Falloff.cpp >x86_64-pc-linux-gnu-g++ -o build/src/numerics/FuncEval.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/numerics/FuncEval.cpp >x86_64-pc-linux-gnu-g++ -o build/src/tpx/HFC134a.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/tpx/HFC134a.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/PDSS.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/PDSS.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/SurfPhase.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/SurfPhase.cpp >x86_64-pc-linux-gnu-g++ -o build/src/zeroD/IdealGasConstPressureReactor.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/zeroD/IdealGasConstPressureReactor.cpp >x86_64-pc-linux-gnu-g++ -o build/src/transport/TransportData.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/transport/TransportData.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_phaseStability.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_phaseStability.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/Species.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/Species.cpp >x86_64-pc-linux-gnu-g++ -o build/src/base/application.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -DCANTERA_DATA=\"/usr/share/cantera/data\" -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/base/application.cpp >x86_64-pc-linux-gnu-g++ -o build/src/base/checkFinite.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/base/checkFinite.cpp >x86_64-pc-linux-gnu-g++ -o build/src/kinetics/importKinetics.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/kinetics/importKinetics.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/IdealSolidSolnPhase.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/IdealSolidSolnPhase.cpp >x86_64-pc-linux-gnu-g++ -o build/src/clib/ct.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/clib/ct.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/SpeciesThermoFactory.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/SpeciesThermoFactory.cpp >x86_64-pc-linux-gnu-g++ -o build/src/kinetics/BulkKinetics.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/kinetics/BulkKinetics.cpp >x86_64-pc-linux-gnu-g++ -o build/src/numerics/Func1.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/numerics/Func1.cpp >x86_64-pc-linux-gnu-g++ -o build/src/tpx/CarbonDioxide.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/tpx/CarbonDioxide.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/NasaPoly2.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/NasaPoly2.cpp >x86_64-pc-linux-gnu-g++ -o build/src/zeroD/FlowReactor.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/zeroD/FlowReactor.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_inest.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_inest.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/SingleSpeciesTP.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/SingleSpeciesTP.cpp >x86_64-pc-linux-gnu-g++ -o build/src/kinetics/RxnRates.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/kinetics/RxnRates.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/IdealMolalSoln.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/IdealMolalSoln.cpp >x86_64-pc-linux-gnu-g++ -o build/src/tpx/utils.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/tpx/utils.cpp >x86_64-pc-linux-gnu-g++ -o build/src/numerics/DenseMatrix.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/numerics/DenseMatrix.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/Nasa9PolyMultiTempRegion.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/Nasa9PolyMultiTempRegion.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/HMWSoln.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/HMWSoln.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_util.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_util.cpp >x86_64-pc-linux-gnu-g++ -o build/src/zeroD/FlowDeviceFactory.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/zeroD/FlowDeviceFactory.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_elem_rearrange.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_elem_rearrange.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/RedlichKwongMFTP.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/RedlichKwongMFTP.cpp >x86_64-pc-linux-gnu-g++ -o build/src/kinetics/ReactionPath.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/kinetics/ReactionPath.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/IdealGasPhase.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/IdealGasPhase.cpp >x86_64-pc-linux-gnu-g++ -o build/src/tpx/Water.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/tpx/Water.cpp >x86_64-pc-linux-gnu-g++ -o build/src/numerics/DAE_solvers.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/numerics/DAE_solvers.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/Nasa9Poly1.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/Nasa9Poly1.cpp >x86_64-pc-linux-gnu-g++ -o build/src/zeroD/flowControllers.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/zeroD/flowControllers.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/GibbsExcessVPSSTP.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/GibbsExcessVPSSTP.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_species_thermo.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_species_thermo.cpp >x86_64-pc-linux-gnu-g++ -o build/src/transport/TransportBase.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/transport/TransportBase.cpp >x86_64-pc-linux-gnu-g++ -o build/src/zeroD/FlowDevice.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/zeroD/FlowDevice.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_elem.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_elem.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/RedlichKisterVPSSTP.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/RedlichKisterVPSSTP.cpp >x86_64-pc-linux-gnu-g++ -o build/src/kinetics/Reaction.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/kinetics/Reaction.cpp >x86_64-pc-linux-gnu-g++ -o build/src/clib/ctxml.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/clib/ctxml.cpp >x86_64-pc-linux-gnu-g++ -o build/src/tpx/Sub.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/tpx/Sub.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/MultiSpeciesThermo.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/MultiSpeciesThermo.cpp >x86_64-pc-linux-gnu-g++ -o build/src/zeroD/WallFactory.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/zeroD/WallFactory.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/FixedChemPotSSTP.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/FixedChemPotSSTP.cpp >x86_64-pc-linux-gnu-g++ -o build/src/base/ValueCache.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/base/ValueCache.cpp >x86_64-pc-linux-gnu-g++ -o build/src/transport/MultiTransport.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/transport/MultiTransport.cpp >x86_64-pc-linux-gnu-g++ -o build/src/oneD/MultiJac.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/oneD/MultiJac.cpp >x86_64-pc-linux-gnu-g++ -o build/src/zeroD/ConstPressureReactor.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/zeroD/ConstPressureReactor.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_VolPhase.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_VolPhase.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/PureFluidPhase.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/PureFluidPhase.cpp >x86_64-pc-linux-gnu-g++ -o build/src/kinetics/KineticsFactory.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/kinetics/KineticsFactory.cpp >x86_64-pc-linux-gnu-g++ -o build/src/clib/ctsurf.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/clib/ctsurf.cpp >x86_64-pc-linux-gnu-g++ -o build/src/tpx/Oxygen.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/tpx/Oxygen.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/Mu0Poly.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/Mu0Poly.cpp >x86_64-pc-linux-gnu-g++ -o build/src/zeroD/Wall.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/zeroD/Wall.cpp >x86_64-pc-linux-gnu-g++ -o build/src/base/xml.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/base/xml.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/Elements.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/Elements.cpp >x86_64-pc-linux-gnu-g++ -o build/src/fortran/fctxml.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -fPIC -DNDEBUG -Iinclude -Isrc -I/usr/include/eigen3 src/fortran/fctxml.cpp >x86_64-pc-linux-gnu-g++ -o build/src/base/Units.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/base/Units.cpp >x86_64-pc-linux-gnu-g++ -o build/src/transport/MixTransport.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/transport/MixTransport.cpp >x86_64-pc-linux-gnu-g++ -o build/src/oneD/IonFlow.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/oneD/IonFlow.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_TP.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_TP.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/Phase.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/Phase.cpp >x86_64-pc-linux-gnu-g++ -o build/src/kinetics/Kinetics.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/kinetics/Kinetics.cpp >x86_64-pc-linux-gnu-g++ -o build/src/tpx/Nitrogen.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/tpx/Nitrogen.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/MolalityVPSSTP.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/MolalityVPSSTP.cpp >x86_64-pc-linux-gnu-g++ -o build/src/zeroD/ReactorSurface.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/zeroD/ReactorSurface.cpp >x86_64-pc-linux-gnu-g++ -o build/src/base/stringUtils.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/base/stringUtils.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_Gibbs.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_Gibbs.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/DebyeHuckel.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/DebyeHuckel.cpp >x86_64-pc-linux-gnu-g++ -o build/src/base/Solution.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/base/Solution.cpp >x86_64-pc-linux-gnu-g++ -o build/src/fortran/fct.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -fPIC -DNDEBUG -Iinclude -Isrc -I/usr/include/eigen3 src/fortran/fct.cpp >x86_64-pc-linux-gnu-g++ -o build/src/transport/MMCollisionInt.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/transport/MMCollisionInt.cpp >x86_64-pc-linux-gnu-g++ -o build/src/oneD/Domain1D.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/oneD/Domain1D.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_SpeciesProperties.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_SpeciesProperties.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/PDSS_Water.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/PDSS_Water.cpp >x86_64-pc-linux-gnu-g++ -o build/src/kinetics/InterfaceKinetics.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/kinetics/InterfaceKinetics.cpp >x86_64-pc-linux-gnu-g++ -o build/src/numerics/polyfit.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/numerics/polyfit.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/BasisOptimize.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/BasisOptimize.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/WaterSSTP.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/WaterSSTP.cpp >x86_64-pc-linux-gnu-g++ -o build/src/tpx/Methane.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/tpx/Methane.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/MixtureFugacityTP.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/MixtureFugacityTP.cpp >x86_64-pc-linux-gnu-g++ -o build/src/zeroD/ReactorNet.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/zeroD/ReactorNet.cpp >x86_64-pc-linux-gnu-g++ -o build/src/base/plots.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/base/plots.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/ConstDensityThermo.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/ConstDensityThermo.cpp >x86_64-pc-linux-gnu-g++ -o build/src/base/AnyMap.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/base/AnyMap.cpp >x86_64-pc-linux-gnu-g++ -o build/src/transport/IonGasTransport.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/transport/IonGasTransport.cpp >x86_64-pc-linux-gnu-g++ -o build/src/oneD/Boundary1D.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/oneD/Boundary1D.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_MultiPhaseEquil.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_MultiPhaseEquil.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/PDSS_SSVol.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/PDSS_SSVol.cpp >x86_64-pc-linux-gnu-g++ -o build/src/numerics/funcs.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/numerics/funcs.cpp >x86_64-pc-linux-gnu-g++ -o build/src/numerics/CVodesIntegrator.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/numerics/CVodesIntegrator.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/WaterPropsIAPWSphi.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/WaterPropsIAPWSphi.cpp >x86_64-pc-linux-gnu-g++ -o build/src/tpx/Hydrogen.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/tpx/Hydrogen.cpp >x86_64-pc-linux-gnu-g++ -o build/src/equil/vcs_solve.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/equil/vcs_solve.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/MaskellSolidSolnPhase.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/MaskellSolidSolnPhase.cpp >x86_64-pc-linux-gnu-g++ -o build/src/zeroD/ReactorFactory.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/zeroD/ReactorFactory.cpp >x86_64-pc-linux-gnu-g++ -o build/src/base/ctml.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/base/ctml.cpp >x86_64-pc-linux-gnu-g++ -o build/src/thermo/ConstCpPoly.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/thermo/ConstCpPoly.cpp >x86_64-pc-linux-gnu-g++ -o build/src/transport/HighPressureGasTransport.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -fPIC -DNDEBUG -Iinclude -Iinclude/cantera/ext -Ibuild/src -I/usr/include/eigen3 src/transport/HighPressureGasTransport.cpp >Install file: "build/data/ohn.xml" as "interfaces/cython/cantera/data/ohn.xml" >Install file: "build/data/ohn.yaml" as "interfaces/cython/cantera/data/ohn.yaml" >Install file: "build/data/ptcombust.cti" as "interfaces/cython/cantera/data/ptcombust.cti" >Install file: "build/data/ptcombust.xml" as "interfaces/cython/cantera/data/ptcombust.xml" >Install file: "build/data/ptcombust.yaml" as "interfaces/cython/cantera/data/ptcombust.yaml" >Install file: "build/data/sample-data/LiC6_electrodebulk.yaml" as "interfaces/cython/cantera/data/sample-data/LiC6_electrodebulk.yaml" >Install file: "build/data/silane.cti" as "interfaces/cython/cantera/data/silane.cti" >Install file: "build/data/silane.xml" as "interfaces/cython/cantera/data/silane.xml" >Install file: "build/data/silane.yaml" as "interfaces/cython/cantera/data/silane.yaml" >Install file: "build/data/silicon.cti" as "interfaces/cython/cantera/data/silicon.cti" >Install file: "build/data/silicon.xml" as "interfaces/cython/cantera/data/silicon.xml" >Install file: "build/data/silicon.yaml" as "interfaces/cython/cantera/data/silicon.yaml" >Install file: "build/data/silicon_carbide.cti" as "interfaces/cython/cantera/data/silicon_carbide.cti" >Install file: "build/data/silicon_carbide.xml" as "interfaces/cython/cantera/data/silicon_carbide.xml" >Install file: "build/data/silicon_carbide.yaml" as "interfaces/cython/cantera/data/silicon_carbide.yaml" >Install file: "build/data/sofc.cti" as "interfaces/cython/cantera/data/sofc.cti" >Install file: "build/data/sofc.xml" as "interfaces/cython/cantera/data/sofc.xml" >Install file: "build/data/sofc.yaml" as "interfaces/cython/cantera/data/sofc.yaml" >Install file: "build/data/water.cti" as "interfaces/cython/cantera/data/water.cti" >Install file: "build/data/water.xml" as "interfaces/cython/cantera/data/water.xml" >Install file: "build/data/water.yaml" as "interfaces/cython/cantera/data/water.yaml" >Install file: "test/data/BinarySolutionTabulatedThermo.cti" as "interfaces/cython/cantera/test/data/BinarySolutionTabulatedThermo.cti" >Install file: "test/data/CombustorTest-integrateWithAdvance.csv" as "interfaces/cython/cantera/test/data/CombustorTest-integrateWithAdvance.csv" >Install file: "test/data/CounterflowPremixedFlame-h2-mix.csv" as "interfaces/cython/cantera/test/data/CounterflowPremixedFlame-h2-mix.csv" >Install file: "test/data/DiffusionFlameTest-h2-auto.csv" as "interfaces/cython/cantera/test/data/DiffusionFlameTest-h2-auto.csv" >Install file: "test/data/DiffusionFlameTest-h2-mix-rad.csv" as "interfaces/cython/cantera/test/data/DiffusionFlameTest-h2-mix-rad.csv" >Install file: "test/data/DiffusionFlameTest-h2-mix.csv" as "interfaces/cython/cantera/test/data/DiffusionFlameTest-h2-mix.csv" >Install file: "test/data/HMW_NaCl_sp1977_alt.xml" as "interfaces/cython/cantera/test/data/HMW_NaCl_sp1977_alt.xml" >Install file: "test/data/IdealMolalSolnPhaseExample.xml" as "interfaces/cython/cantera/test/data/IdealMolalSolnPhaseExample.xml" >Install file: "test/data/IdealSolidSolnPhaseExample.xml" as "interfaces/cython/cantera/test/data/IdealSolidSolnPhaseExample.xml" >Install file: "test/data/Li7Si3_ls.xml" as "interfaces/cython/cantera/test/data/Li7Si3_ls.xml" >Install file: "test/data/LiFixed.xml" as "interfaces/cython/cantera/test/data/LiFixed.xml" >Install file: "test/data/LiKCl_liquid.xml" as "interfaces/cython/cantera/test/data/LiKCl_liquid.xml" >Install file: "test/data/Li_Liquid.xml" as "interfaces/cython/cantera/test/data/Li_Liquid.xml" >Install file: "test/data/MaskellSolidSolnPhase_nohmix.xml" as "interfaces/cython/cantera/test/data/MaskellSolidSolnPhase_nohmix.xml" >Install file: "test/data/MaskellSolidSolnPhase_valid.xml" as "interfaces/cython/cantera/test/data/MaskellSolidSolnPhase_valid.xml" >Install file: "test/data/NaCl_Solid.xml" as "interfaces/cython/cantera/test/data/NaCl_Solid.xml" >Install file: "test/data/RedlichKisterVPSSTP_valid.xml" as "interfaces/cython/cantera/test/data/RedlichKisterVPSSTP_valid.xml" >Install file: "test/data/WallKinetics-coverages-regression1.csv" as "interfaces/cython/cantera/test/data/WallKinetics-coverages-regression1.csv" >Install file: "test/data/WallKinetics-coverages-regression2.csv" as "interfaces/cython/cantera/test/data/WallKinetics-coverages-regression2.csv" >Install file: "test/data/WallTest-integrateWithAdvance.csv" as "interfaces/cython/cantera/test/data/WallTest-integrateWithAdvance.csv" >Install file: "test/data/addReactions_err_test.yaml" as "interfaces/cython/cantera/test/data/addReactions_err_test.yaml" >Install file: "test/data/air-no-reactions.cti" as "interfaces/cython/cantera/test/data/air-no-reactions.cti" >Install file: "test/data/air-no-reactions.xml" as "interfaces/cython/cantera/test/data/air-no-reactions.xml" >Install file: "test/data/bad-troe.inp" as "interfaces/cython/cantera/test/data/bad-troe.inp" >Install file: "test/data/big_element_num_err.inp" as "interfaces/cython/cantera/test/data/big_element_num_err.inp" >Install file: "test/data/blank_line_in_header.inp" as "interfaces/cython/cantera/test/data/blank_line_in_header.inp" >Install file: "test/data/ch4_ion.cti" as "interfaces/cython/cantera/test/data/ch4_ion.cti" >Install file: "test/data/ch4_ion.xml" as "interfaces/cython/cantera/test/data/ch4_ion.xml" >Install file: "test/data/ch4_ion.yaml" as "interfaces/cython/cantera/test/data/ch4_ion.yaml" >Install file: "test/data/chemically-activated-reaction.inp" as "interfaces/cython/cantera/test/data/chemically-activated-reaction.inp" >Install file: "test/data/chemically-activated-reaction.xml" as "interfaces/cython/cantera/test/data/chemically-activated-reaction.xml" >Install file: "test/data/co2_RK_example.cti" as "interfaces/cython/cantera/test/data/co2_RK_example.cti" >Install file: "test/data/co2_RK_example.xml" as "interfaces/cython/cantera/test/data/co2_RK_example.xml" >Install file: "test/data/co2_RK_lookup.cti" as "interfaces/cython/cantera/test/data/co2_RK_lookup.cti" >Install file: "test/data/custom-elements.inp" as "interfaces/cython/cantera/test/data/custom-elements.inp" >Install file: "test/data/debye-huckel-all.xml" as "interfaces/cython/cantera/test/data/debye-huckel-all.xml" >Install file: "test/data/diamond_cvd.csv" as "interfaces/cython/cantera/test/data/diamond_cvd.csv" >Install file: "test/data/dummy-thermo.dat" as "interfaces/cython/cantera/test/data/dummy-thermo.dat" >Install file: "test/data/duplicate-reactionData-ids.xml" as "interfaces/cython/cantera/test/data/duplicate-reactionData-ids.xml" >Install file: "test/data/duplicate-reactions.cti" as "interfaces/cython/cantera/test/data/duplicate-reactions.cti" >Install file: "test/data/duplicate-species.inp" as "interfaces/cython/cantera/test/data/duplicate-species.inp" >Install file: "test/data/duplicate-speciesData-ids.xml" as "interfaces/cython/cantera/test/data/duplicate-speciesData-ids.xml" >Install file: "test/data/duplicate-thermo.inp" as "interfaces/cython/cantera/test/data/duplicate-thermo.inp" >Install file: "test/data/equilibrium.cti" as "interfaces/cython/cantera/test/data/equilibrium.cti" >Install file: "test/data/explicit-forward-order.inp" as "interfaces/cython/cantera/test/data/explicit-forward-order.inp" >Install file: "test/data/explicit-forward-order.xml" as "interfaces/cython/cantera/test/data/explicit-forward-order.xml" >Install file: "test/data/explicit-reverse-rate.inp" as "interfaces/cython/cantera/test/data/explicit-reverse-rate.inp" >Install file: "test/data/explicit-reverse-rate.xml" as "interfaces/cython/cantera/test/data/explicit-reverse-rate.xml" >Install file: "test/data/explicit-third-bodies.inp" as "interfaces/cython/cantera/test/data/explicit-third-bodies.inp" >Install file: "test/data/explicit-third-bodies.xml" as "interfaces/cython/cantera/test/data/explicit-third-bodies.xml" >Install file: "test/data/extra.yaml" as "interfaces/cython/cantera/test/data/extra.yaml" >Install file: "test/data/float-stoich.inp" as "interfaces/cython/cantera/test/data/float-stoich.inp" >Install file: "test/data/frac.cti" as "interfaces/cython/cantera/test/data/frac.cti" >Install file: "test/data/frac.xml" as "interfaces/cython/cantera/test/data/frac.xml" >Install file: "test/data/gas-carbon-equil.csv" as "interfaces/cython/cantera/test/data/gas-carbon-equil.csv" >Install file: "test/data/gasNASA9.xml" as "interfaces/cython/cantera/test/data/gasNASA9.xml" >Install file: "test/data/gri30.inp" as "interfaces/cython/cantera/test/data/gri30.inp" >Install file: "test/data/gri30_thermo.dat" as "interfaces/cython/cantera/test/data/gri30_thermo.dat" >Install file: "test/data/gri30_tran.dat" as "interfaces/cython/cantera/test/data/gri30_tran.dat" >Install file: "test/data/h2o2-bad-geometry-tran.dat" as "interfaces/cython/cantera/test/data/h2o2-bad-geometry-tran.dat" >Install file: "test/data/h2o2-duplicate-species-tran.dat" as "interfaces/cython/cantera/test/data/h2o2-duplicate-species-tran.dat" >Install file: "test/data/h2o2-extra-column-entries-tran.dat" as "interfaces/cython/cantera/test/data/h2o2-extra-column-entries-tran.dat" >Install file: "test/data/h2o2-float-geometry-tran.dat" as "interfaces/cython/cantera/test/data/h2o2-float-geometry-tran.dat" >Install file: "test/data/h2o2-missing-species-tran.dat" as "interfaces/cython/cantera/test/data/h2o2-missing-species-tran.dat" >Install file: "test/data/h2o2-plus.xml" as "interfaces/cython/cantera/test/data/h2o2-plus.xml" >Install file: "test/data/h2o2.inp" as "interfaces/cython/cantera/test/data/h2o2.inp" >Install file: "test/data/h2o2_emptyReactions.inp" as "interfaces/cython/cantera/test/data/h2o2_emptyReactions.inp" >Install file: "test/data/h2o2_missingElement.inp" as "interfaces/cython/cantera/test/data/h2o2_missingElement.inp" >Install file: "test/data/h2o2_missingThermo.inp" as "interfaces/cython/cantera/test/data/h2o2_missingThermo.inp" >Install file: "test/data/h2o2_unbalancedReaction.xml" as "interfaces/cython/cantera/test/data/h2o2_unbalancedReaction.xml" >Install file: "test/data/ideal-gas.yaml" as "interfaces/cython/cantera/test/data/ideal-gas.yaml" >Install file: "test/data/invalid-equation.inp" as "interfaces/cython/cantera/test/data/invalid-equation.inp" >Install file: "test/data/invalid.cti" as "interfaces/cython/cantera/test/data/invalid.cti" >Install file: "test/data/kineticsfromscratch.cti" as "interfaces/cython/cantera/test/data/kineticsfromscratch.cti" >Install file: "test/data/koh-equil-HP.csv" as "interfaces/cython/cantera/test/data/koh-equil-HP.csv" >Install file: "test/data/koh-equil-TP.csv" as "interfaces/cython/cantera/test/data/koh-equil-TP.csv" >Install file: "test/data/liquid-water.xml" as "interfaces/cython/cantera/test/data/liquid-water.xml" >Install file: "test/data/mock_ion.xml" as "interfaces/cython/cantera/test/data/mock_ion.xml" >Install file: "test/data/nasa9-test-subset.inp" as "interfaces/cython/cantera/test/data/nasa9-test-subset.inp" >Install file: "test/data/nasa9-test-subset.xml" as "interfaces/cython/cantera/test/data/nasa9-test-subset.xml" >Install file: "test/data/nasa9-test-therm.dat" as "interfaces/cython/cantera/test/data/nasa9-test-therm.dat" >Install file: "test/data/nasa9-test.inp" as "interfaces/cython/cantera/test/data/nasa9-test.inp" >Install file: "test/data/nasa9-test.xml" as "interfaces/cython/cantera/test/data/nasa9-test.xml" >Install file: "test/data/negative-order.cti" as "interfaces/cython/cantera/test/data/negative-order.cti" >Install file: "test/data/negative-order.inp" as "interfaces/cython/cantera/test/data/negative-order.inp" >Install file: "test/data/negative-rate.inp" as "interfaces/cython/cantera/test/data/negative-rate.inp" >Install file: "test/data/noninteger-atomicity.cti" as "interfaces/cython/cantera/test/data/noninteger-atomicity.cti" >Install file: "test/data/noxNeg.cti" as "interfaces/cython/cantera/test/data/noxNeg.cti" >Install file: "test/data/noxNeg.xml" as "interfaces/cython/cantera/test/data/noxNeg.xml" >Install file: "test/data/pdep-test.cti" as "interfaces/cython/cantera/test/data/pdep-test.cti" >Install file: "test/data/pdep-test.inp" as "interfaces/cython/cantera/test/data/pdep-test.inp" >Install file: "test/data/pdep-test.xml" as "interfaces/cython/cantera/test/data/pdep-test.xml" >Install file: "test/data/pdss_hkft.xml" as "interfaces/cython/cantera/test/data/pdss_hkft.xml" >Install file: "test/data/phase-reaction-spec1.yaml" as "interfaces/cython/cantera/test/data/phase-reaction-spec1.yaml" >Install file: "test/data/phase-reaction-spec2.yaml" as "interfaces/cython/cantera/test/data/phase-reaction-spec2.yaml" >Install file: "test/data/photo-reaction.inp" as "interfaces/cython/cantera/test/data/photo-reaction.inp" >Install file: "test/data/photo-reaction.xml" as "interfaces/cython/cantera/test/data/photo-reaction.xml" >Install file: "test/data/ptcombust-motzwise.cti" as "interfaces/cython/cantera/test/data/ptcombust-motzwise.cti" >Install file: "test/data/ptcombust-motzwise.xml" as "interfaces/cython/cantera/test/data/ptcombust-motzwise.xml" >Install file: "test/data/ptcombust-simple.cti" as "interfaces/cython/cantera/test/data/ptcombust-simple.cti" >Install file: "test/data/reaction-orders.cti" as "interfaces/cython/cantera/test/data/reaction-orders.cti" >Install file: "test/data/reaction-orders.xml" as "interfaces/cython/cantera/test/data/reaction-orders.xml" >Install file: "test/data/simplephases.cti" as "interfaces/cython/cantera/test/data/simplephases.cti" >Install file: "test/data/sofc-test.csv" as "interfaces/cython/cantera/test/data/sofc-test.csv" >Install file: "test/data/sofc-test.xml" as "interfaces/cython/cantera/test/data/sofc-test.xml" >Install file: "test/data/soot-therm.dat" as "interfaces/cython/cantera/test/data/soot-therm.dat" >Install file: "test/data/soot.inp" as "interfaces/cython/cantera/test/data/soot.inp" >Install file: "test/data/soot.xml" as "interfaces/cython/cantera/test/data/soot.xml" >Install file: "test/data/species-names.inp" as "interfaces/cython/cantera/test/data/species-names.inp" >Install file: "test/data/species-names.xml" as "interfaces/cython/cantera/test/data/species-names.xml" >Install file: "test/data/sri-falloff.inp" as "interfaces/cython/cantera/test/data/sri-falloff.inp" >Install file: "test/data/sri-falloff.xml" as "interfaces/cython/cantera/test/data/sri-falloff.xml" >Install file: "test/data/sri_convert_test.txt" as "interfaces/cython/cantera/test/data/sri_convert_test.txt" >Install file: "test/data/steam-reforming.cti" as "interfaces/cython/cantera/test/data/steam-reforming.cti" >Install file: "test/data/steam-reforming.xml" as "interfaces/cython/cantera/test/data/steam-reforming.xml" >Install file: "test/data/surface-phases.yaml" as "interfaces/cython/cantera/test/data/surface-phases.yaml" >Install file: "test/data/surface1-gas-noreac.inp" as "interfaces/cython/cantera/test/data/surface1-gas-noreac.inp" >Install file: "test/data/surface1-gas.inp" as "interfaces/cython/cantera/test/data/surface1-gas.inp" >Install file: "test/data/surface1.inp" as "interfaces/cython/cantera/test/data/surface1.inp" >Install file: "test/data/test_subdir/species-elements.yaml" as "interfaces/cython/cantera/test/data/test_subdir/species-elements.yaml" >Install file: "test/data/thermo-models.yaml" as "interfaces/cython/cantera/test/data/thermo-models.yaml" >Install file: "test/data/third_body_plus_falloff_reaction.inp" as "interfaces/cython/cantera/test/data/third_body_plus_falloff_reaction.inp" >Install file: "test/data/transport_models_test.xml" as "interfaces/cython/cantera/test/data/transport_models_test.xml" >Install file: "test/data/undeclared-duplicate-reactions.inp" as "interfaces/cython/cantera/test/data/undeclared-duplicate-reactions.inp" >Install file: "test/data/units-custom.inp" as "interfaces/cython/cantera/test/data/units-custom.inp" >Install file: "test/data/units-default.inp" as "interfaces/cython/cantera/test/data/units-default.inp" >Install file: "test/data/unrecognized-section.inp" as "interfaces/cython/cantera/test/data/unrecognized-section.inp" >Install file: "test/data/unterminated-sections.inp" as "interfaces/cython/cantera/test/data/unterminated-sections.inp" >Install file: "test/data/unterminated-sections2.inp" as "interfaces/cython/cantera/test/data/unterminated-sections2.inp" >Install file: "test/data/with-transport.inp" as "interfaces/cython/cantera/test/data/with-transport.inp" >Substituting vars from interfaces/cython/setup.py.in to interfaces/cython/setup.py >python3.8 -c "import Cython.Build; Cython.Build.cythonize('interfaces/cython/cantera/_cantera.pyx')" >Substituting vars from platform/posix/Cantera.mak.in to build/platform/Cantera.mak >Substituting vars from platform/posix/cantera.pc.in to build/platform/cantera.pc >Substituting vars from samples/cxx/Makefile.in to build/samples/cxx/combustor/Makefile >Substituting vars from samples/cxx/Makefile.in to build/samples/cxx/demo/Makefile >Substituting vars from samples/cxx/Makefile.in to build/samples/cxx/flamespeed/Makefile >Substituting vars from samples/cxx/Makefile.in to build/samples/cxx/kinetics1/Makefile >Substituting vars from samples/cxx/Makefile.in to build/samples/cxx/gas_transport/Makefile >Substituting vars from samples/cxx/Makefile.in to build/samples/cxx/rankine/Makefile >Substituting vars from samples/cxx/Makefile.in to build/samples/cxx/LiC6_electrode/Makefile >Substituting vars from samples/cxx/Makefile.in to build/samples/cxx/openmp_ignition/Makefile >Substituting vars from samples/cxx/Makefile.in to build/samples/cxx/bvp/Makefile >Compiling interfaces/cython/cantera/_cantera.pyx because it changed. >[1/1] Cythonizing interfaces/cython/cantera/_cantera.pyx >ar rc build/lib/libcantera_fortran.a build/src/fortran/cantera.os build/src/fortran/cantera_funcs.os build/src/fortran/cantera_iface.os build/src/fortran/cantera_kinetics.os build/src/fortran/cantera_thermo.os build/src/fortran/cantera_transport.os build/src/fortran/cantera_xml.os build/src/fortran/fct_interface.os build/src/fortran/fctxml_interface.os build/src/fortran/fct.os build/src/fortran/fctxml.os >ranlib build/lib/libcantera_fortran.a >x86_64-pc-linux-gnu-g++ -o build/temp-py/_cantera.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -fPIC -DNDEBUG -Iinclude -I/usr/include/python3.8 -I/usr/lib/python3.8/site-packages/numpy/core/include -I/usr/include/eigen3 interfaces/cython/cantera/_cantera.cpp >In file included from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822, > from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/ndarrayobject.h:12, > from /usr/lib/python3.8/site-packages/numpy/core/include/numpy/arrayobject.h:4, > from interfaces/cython/cantera/_cantera.cpp:659: >/usr/lib/python3.8/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp[https://gcc.gnu.org/onlinedocs/gcc/Warning-Options.html#index-Wcpp]] > 17 | #warning "Using deprecated NumPy API, disable it with " \ > | ^~~~~~~ >x86_64-pc-linux-gnu-g++ -o build/lib/libcantera.so.2.5.1 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread -shared -Wl,-soname=libcantera.so.2 build/ext/libexecstream/exec-stream.os build/src/base/AnyMap.os build/src/base/Solution.os build/src/base/Units.os build/src/base/ValueCache.os build/src/base/checkFinite.os build/src/base/clockWC.os build/src/base/ct2ctml.os build/src/base/ctexceptions.os build/src/base/ctml.os build/src/base/plots.os build/src/base/stringUtils.os build/src/base/xml.os build/src/base/application.os build/src/base/global.os build/src/thermo/BinarySolutionTabulatedThermo.os build/src/thermo/ConstCpPoly.os build/src/thermo/ConstDensityThermo.os build/src/thermo/DebyeHuckel.os build/src/thermo/Elements.os build/src/thermo/FixedChemPotSSTP.os build/src/thermo/GibbsExcessVPSSTP.os build/src/thermo/HMWSoln.os build/src/thermo/IdealGasPhase.os build/src/thermo/IdealMolalSoln.os build/src/thermo/IdealSolidSolnPhase.os build/src/thermo/IdealSolnGasVPSS.os build/src/thermo/IonsFromNeutralVPSSTP.os build/src/thermo/LatticePhase.os build/src/thermo/LatticeSolidPhase.os build/src/thermo/MargulesVPSSTP.os build/src/thermo/MaskellSolidSolnPhase.os build/src/thermo/MixtureFugacityTP.os build/src/thermo/MolalityVPSSTP.os build/src/thermo/Mu0Poly.os build/src/thermo/MultiSpeciesThermo.os build/src/thermo/Nasa9Poly1.os build/src/thermo/Nasa9PolyMultiTempRegion.os build/src/thermo/NasaPoly2.os build/src/thermo/PDSS.os build/src/thermo/PDSSFactory.os build/src/thermo/PDSS_ConstVol.os build/src/thermo/PDSS_HKFT.os build/src/thermo/PDSS_IdealGas.os build/src/thermo/PDSS_IonsFromNeutral.os build/src/thermo/PDSS_SSVol.os build/src/thermo/PDSS_Water.os build/src/thermo/Phase.os build/src/thermo/PureFluidPhase.os build/src/thermo/RedlichKisterVPSSTP.os build/src/thermo/RedlichKwongMFTP.os build/src/thermo/SingleSpeciesTP.os build/src/thermo/Species.os build/src/thermo/SpeciesThermoFactory.os build/src/thermo/SpeciesThermoInterpType.os build/src/thermo/StoichSubstance.os build/src/thermo/SurfPhase.os build/src/thermo/ThermoFactory.os build/src/thermo/ThermoPhase.os build/src/thermo/VPStandardStateTP.os build/src/thermo/WaterProps.os build/src/thermo/WaterPropsIAPWS.os build/src/thermo/WaterPropsIAPWSphi.os build/src/thermo/WaterSSTP.os build/src/tpx/CarbonDioxide.os build/src/tpx/HFC134a.os build/src/tpx/Heptane.os build/src/tpx/Hydrogen.os build/src/tpx/Methane.os build/src/tpx/Nitrogen.os build/src/tpx/Oxygen.os build/src/tpx/Sub.os build/src/tpx/Water.os build/src/tpx/utils.os build/src/equil/BasisOptimize.os build/src/equil/ChemEquil.os build/src/equil/MultiPhase.os build/src/equil/MultiPhaseEquil.os build/src/equil/vcs_Gibbs.os build/src/equil/vcs_MultiPhaseEquil.os build/src/equil/vcs_SpeciesProperties.os build/src/equil/vcs_TP.os build/src/equil/vcs_VolPhase.os build/src/equil/vcs_elem.os build/src/equil/vcs_elem_rearrange.os build/src/equil/vcs_inest.os build/src/equil/vcs_phaseStability.os build/src/equil/vcs_prep.os build/src/equil/vcs_prob.os build/src/equil/vcs_report.os build/src/equil/vcs_rxnadj.os build/src/equil/vcs_setMolesLinProg.os build/src/equil/vcs_solve.os build/src/equil/vcs_solve_TP.os build/src/equil/vcs_species_thermo.os build/src/equil/vcs_util.os build/src/numerics/BandMatrix.os build/src/numerics/CVodesIntegrator.os build/src/numerics/DAE_solvers.os build/src/numerics/DenseMatrix.os build/src/numerics/Func1.os build/src/numerics/FuncEval.os build/src/numerics/IDA_Solver.os build/src/numerics/ODE_integrators.os build/src/numerics/ResidJacEval.os build/src/numerics/funcs.os build/src/numerics/polyfit.os build/src/kinetics/BulkKinetics.os build/src/kinetics/Falloff.os build/src/kinetics/FalloffFactory.os build/src/kinetics/GasKinetics.os build/src/kinetics/Group.os build/src/kinetics/ImplicitSurfChem.os build/src/kinetics/InterfaceKinetics.os build/src/kinetics/Kinetics.os build/src/kinetics/KineticsFactory.os build/src/kinetics/Reaction.os build/src/kinetics/ReactionPath.os build/src/kinetics/RxnRates.os build/src/kinetics/importKinetics.os build/src/kinetics/solveSP.os build/src/transport/DustyGasTransport.os build/src/transport/GasTransport.os build/src/transport/HighPressureGasTransport.os build/src/transport/IonGasTransport.os build/src/transport/MMCollisionInt.os build/src/transport/MixTransport.os build/src/transport/MultiTransport.os build/src/transport/TransportBase.os build/src/transport/TransportData.os build/src/transport/TransportFactory.os build/src/transport/TransportParams.os build/src/transport/WaterTransport.os build/src/oneD/Boundary1D.os build/src/oneD/Domain1D.os build/src/oneD/IonFlow.os build/src/oneD/MultiJac.os build/src/oneD/MultiNewton.os build/src/oneD/OneDim.os build/src/oneD/Sim1D.os build/src/oneD/StFlow.os build/src/oneD/refine.os build/src/zeroD/ConstPressureReactor.os build/src/zeroD/FlowDevice.os build/src/zeroD/FlowDeviceFactory.os build/src/zeroD/FlowReactor.os build/src/zeroD/IdealGasConstPressureReactor.os build/src/zeroD/IdealGasReactor.os build/src/zeroD/Reactor.os build/src/zeroD/ReactorBase.os build/src/zeroD/ReactorFactory.os build/src/zeroD/ReactorNet.os build/src/zeroD/ReactorSurface.os build/src/zeroD/Wall.os build/src/zeroD/WallFactory.os build/src/zeroD/flowControllers.os build/src/clib/ct.os build/src/clib/ctfunc.os build/src/clib/ctmultiphase.os build/src/clib/ctonedim.os build/src/clib/ctreactor.os build/src/clib/ctrpath.os build/src/clib/ctsurf.os build/src/clib/ctxml.os $( -Lbuild/lib $) -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >ar rc build/lib/libcantera.a build/ext/libexecstream/exec-stream.os build/src/base/AnyMap.os build/src/base/Solution.os build/src/base/Units.os build/src/base/ValueCache.os build/src/base/checkFinite.os build/src/base/clockWC.os build/src/base/ct2ctml.os build/src/base/ctexceptions.os build/src/base/ctml.os build/src/base/plots.os build/src/base/stringUtils.os build/src/base/xml.os build/src/base/application.os build/src/base/global.os build/src/thermo/BinarySolutionTabulatedThermo.os build/src/thermo/ConstCpPoly.os build/src/thermo/ConstDensityThermo.os build/src/thermo/DebyeHuckel.os build/src/thermo/Elements.os build/src/thermo/FixedChemPotSSTP.os build/src/thermo/GibbsExcessVPSSTP.os build/src/thermo/HMWSoln.os build/src/thermo/IdealGasPhase.os build/src/thermo/IdealMolalSoln.os build/src/thermo/IdealSolidSolnPhase.os build/src/thermo/IdealSolnGasVPSS.os build/src/thermo/IonsFromNeutralVPSSTP.os build/src/thermo/LatticePhase.os build/src/thermo/LatticeSolidPhase.os build/src/thermo/MargulesVPSSTP.os build/src/thermo/MaskellSolidSolnPhase.os build/src/thermo/MixtureFugacityTP.os build/src/thermo/MolalityVPSSTP.os build/src/thermo/Mu0Poly.os build/src/thermo/MultiSpeciesThermo.os build/src/thermo/Nasa9Poly1.os build/src/thermo/Nasa9PolyMultiTempRegion.os build/src/thermo/NasaPoly2.os build/src/thermo/PDSS.os build/src/thermo/PDSSFactory.os build/src/thermo/PDSS_ConstVol.os build/src/thermo/PDSS_HKFT.os build/src/thermo/PDSS_IdealGas.os build/src/thermo/PDSS_IonsFromNeutral.os build/src/thermo/PDSS_SSVol.os build/src/thermo/PDSS_Water.os build/src/thermo/Phase.os build/src/thermo/PureFluidPhase.os build/src/thermo/RedlichKisterVPSSTP.os build/src/thermo/RedlichKwongMFTP.os build/src/thermo/SingleSpeciesTP.os build/src/thermo/Species.os build/src/thermo/SpeciesThermoFactory.os build/src/thermo/SpeciesThermoInterpType.os build/src/thermo/StoichSubstance.os build/src/thermo/SurfPhase.os build/src/thermo/ThermoFactory.os build/src/thermo/ThermoPhase.os build/src/thermo/VPStandardStateTP.os build/src/thermo/WaterProps.os build/src/thermo/WaterPropsIAPWS.os build/src/thermo/WaterPropsIAPWSphi.os build/src/thermo/WaterSSTP.os build/src/tpx/CarbonDioxide.os build/src/tpx/HFC134a.os build/src/tpx/Heptane.os build/src/tpx/Hydrogen.os build/src/tpx/Methane.os build/src/tpx/Nitrogen.os build/src/tpx/Oxygen.os build/src/tpx/Sub.os build/src/tpx/Water.os build/src/tpx/utils.os build/src/equil/BasisOptimize.os build/src/equil/ChemEquil.os build/src/equil/MultiPhase.os build/src/equil/MultiPhaseEquil.os build/src/equil/vcs_Gibbs.os build/src/equil/vcs_MultiPhaseEquil.os build/src/equil/vcs_SpeciesProperties.os build/src/equil/vcs_TP.os build/src/equil/vcs_VolPhase.os build/src/equil/vcs_elem.os build/src/equil/vcs_elem_rearrange.os build/src/equil/vcs_inest.os build/src/equil/vcs_phaseStability.os build/src/equil/vcs_prep.os build/src/equil/vcs_prob.os build/src/equil/vcs_report.os build/src/equil/vcs_rxnadj.os build/src/equil/vcs_setMolesLinProg.os build/src/equil/vcs_solve.os build/src/equil/vcs_solve_TP.os build/src/equil/vcs_species_thermo.os build/src/equil/vcs_util.os build/src/numerics/BandMatrix.os build/src/numerics/CVodesIntegrator.os build/src/numerics/DAE_solvers.os build/src/numerics/DenseMatrix.os build/src/numerics/Func1.os build/src/numerics/FuncEval.os build/src/numerics/IDA_Solver.os build/src/numerics/ODE_integrators.os build/src/numerics/ResidJacEval.os build/src/numerics/funcs.os build/src/numerics/polyfit.os build/src/kinetics/BulkKinetics.os build/src/kinetics/Falloff.os build/src/kinetics/FalloffFactory.os build/src/kinetics/GasKinetics.os build/src/kinetics/Group.os build/src/kinetics/ImplicitSurfChem.os build/src/kinetics/InterfaceKinetics.os build/src/kinetics/Kinetics.os build/src/kinetics/KineticsFactory.os build/src/kinetics/Reaction.os build/src/kinetics/ReactionPath.os build/src/kinetics/RxnRates.os build/src/kinetics/importKinetics.os build/src/kinetics/solveSP.os build/src/transport/DustyGasTransport.os build/src/transport/GasTransport.os build/src/transport/HighPressureGasTransport.os build/src/transport/IonGasTransport.os build/src/transport/MMCollisionInt.os build/src/transport/MixTransport.os build/src/transport/MultiTransport.os build/src/transport/TransportBase.os build/src/transport/TransportData.os build/src/transport/TransportFactory.os build/src/transport/TransportParams.os build/src/transport/WaterTransport.os build/src/oneD/Boundary1D.os build/src/oneD/Domain1D.os build/src/oneD/IonFlow.os build/src/oneD/MultiJac.os build/src/oneD/MultiNewton.os build/src/oneD/OneDim.os build/src/oneD/Sim1D.os build/src/oneD/StFlow.os build/src/oneD/refine.os build/src/zeroD/ConstPressureReactor.os build/src/zeroD/FlowDevice.os build/src/zeroD/FlowDeviceFactory.os build/src/zeroD/FlowReactor.os build/src/zeroD/IdealGasConstPressureReactor.os build/src/zeroD/IdealGasReactor.os build/src/zeroD/Reactor.os build/src/zeroD/ReactorBase.os build/src/zeroD/ReactorFactory.os build/src/zeroD/ReactorNet.os build/src/zeroD/ReactorSurface.os build/src/zeroD/Wall.os build/src/zeroD/WallFactory.os build/src/zeroD/flowControllers.os build/src/clib/ct.os build/src/clib/ctfunc.os build/src/clib/ctmultiphase.os build/src/clib/ctonedim.os build/src/clib/ctreactor.os build/src/clib/ctrpath.os build/src/clib/ctsurf.os build/src/clib/ctxml.os >ranlib build/lib/libcantera.a >Create symlinks for: 'build/lib/libcantera.so.2.5.1' > 'build/lib/libcantera.so.2'->'build/lib/libcantera.so.2.5.1' > 'build/lib/libcantera.so'->'build/lib/libcantera.so.2.5.1' >x86_64-pc-linux-gnu-gfortran -o build/lib/libcantera_fortran.so.2.5.1 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread -shared -Wl,-soname=libcantera_fortran.so.2 build/src/fortran/cantera.os build/src/fortran/cantera_funcs.os build/src/fortran/cantera_iface.os build/src/fortran/cantera_kinetics.os build/src/fortran/cantera_thermo.os build/src/fortran/cantera_transport.os build/src/fortran/cantera_xml.os build/src/fortran/fct_interface.os build/src/fortran/fctxml_interface.os build/src/fortran/fct.os build/src/fortran/fctxml.os $( -Lbuild/lib $) -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp -lstdc++ >Create symlinks for: 'build/lib/libcantera_fortran.so.2.5.1' > 'build/lib/libcantera_fortran.so.2'->'build/lib/libcantera_fortran.so.2.5.1' > 'build/lib/libcantera_fortran.so'->'build/lib/libcantera_fortran.so.2.5.1' >x86_64-pc-linux-gnu-g++ -o build/python/cantera/_cantera.cpython-38-x86_64-linux-gnu.so -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread -shared build/temp-py/_cantera.os -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >cd interfaces/cython && "python3.8" setup.py build --build-lib=../../build/python >running build >running build_py >copying cantera/ck2cti.py -> ../../build/python/cantera >copying cantera/utils.py -> ../../build/python/cantera >copying cantera/ctml_writer.py -> ../../build/python/cantera >copying cantera/cti2yaml.py -> ../../build/python/cantera >copying cantera/__init__.py -> ../../build/python/cantera >copying cantera/composite.py -> ../../build/python/cantera >copying cantera/ctml2yaml.py -> ../../build/python/cantera >copying cantera/liquidvapor.py -> ../../build/python/cantera >copying cantera/interrupts.py -> ../../build/python/cantera >copying cantera/onedim.py -> ../../build/python/cantera >copying cantera/ck2yaml.py -> ../../build/python/cantera >creating ../../build/python/cantera/data >copying cantera/data/__init__.py -> ../../build/python/cantera/data >creating ../../build/python/cantera/test >copying cantera/test/test_reactor.py -> ../../build/python/cantera/test >copying cantera/test/test_mixture.py -> ../../build/python/cantera/test >copying cantera/test/test_equilibrium.py -> ../../build/python/cantera/test >copying cantera/test/test_convert.py -> ../../build/python/cantera/test >copying cantera/test/test_kinetics.py -> ../../build/python/cantera/test >copying cantera/test/__init__.py -> ../../build/python/cantera/test >copying cantera/test/test_func1.py -> ../../build/python/cantera/test >copying cantera/test/test_thermo.py -> ../../build/python/cantera/test >copying cantera/test/test_composite.py -> ../../build/python/cantera/test >copying cantera/test/test_onedim.py -> ../../build/python/cantera/test >copying cantera/test/utilities.py -> ../../build/python/cantera/test >copying cantera/test/test_purefluid.py -> ../../build/python/cantera/test >copying cantera/test/test_transport.py -> ../../build/python/cantera/test >creating ../../build/python/cantera/test/data >copying cantera/test/data/__init__.py -> ../../build/python/cantera/test/data >creating ../../build/python/cantera/examples >copying cantera/examples/__init__.py -> ../../build/python/cantera/examples >copying cantera/_cantera.pxd -> ../../build/python/cantera >copying cantera/__init__.pxd -> ../../build/python/cantera >copying cantera/data/liquidvapor.cti -> ../../build/python/cantera/data >copying cantera/data/gri30.yaml -> ../../build/python/cantera/data >copying cantera/data/nasa.yaml -> ../../build/python/cantera/data >copying cantera/data/gri30.xml -> ../../build/python/cantera/data >copying cantera/data/gri30_highT.yaml -> ../../build/python/cantera/data >copying cantera/data/gri30_highT.xml -> ../../build/python/cantera/data >copying cantera/data/silicon_carbide.yaml -> ../../build/python/cantera/data >copying cantera/data/airNASA9.xml -> ../../build/python/cantera/data >copying cantera/data/liquidvapor.yaml -> ../../build/python/cantera/data >copying cantera/data/nasa_gas.xml -> ../../build/python/cantera/data >copying cantera/data/air.yaml -> ../../build/python/cantera/data >copying cantera/data/graphite.yaml -> ../../build/python/cantera/data >copying cantera/data/elements.xml -> ../../build/python/cantera/data >copying cantera/data/nasa_condensed.yaml -> ../../build/python/cantera/data >copying cantera/data/sofc.yaml -> ../../build/python/cantera/data >copying cantera/data/air.cti -> ../../build/python/cantera/data >copying cantera/data/nDodecane_Reitz.yaml -> ../../build/python/cantera/data >copying cantera/data/airNASA9.cti -> ../../build/python/cantera/data >copying cantera/data/nasa.cti -> ../../build/python/cantera/data >copying cantera/data/air.xml -> ../../build/python/cantera/data >copying cantera/data/argon.yaml -> ../../build/python/cantera/data >copying cantera/data/water.xml -> ../../build/python/cantera/data >copying cantera/data/airNASA9.yaml -> ../../build/python/cantera/data >copying cantera/data/ptcombust.xml -> ../../build/python/cantera/data >copying cantera/data/nasa_condensed.cti -> ../../build/python/cantera/data >copying cantera/data/methane_pox_on_pt.cti -> ../../build/python/cantera/data >copying cantera/data/silane.yaml -> ../../build/python/cantera/data >copying cantera/data/sofc.xml -> ../../build/python/cantera/data >copying cantera/data/nasa_gas.cti -> ../../build/python/cantera/data >copying cantera/data/liquidvapor.xml -> ../../build/python/cantera/data >copying cantera/data/silane.cti -> ../../build/python/cantera/data >copying cantera/data/ptcombust.yaml -> ../../build/python/cantera/data >copying cantera/data/silicon.yaml -> ../../build/python/cantera/data >copying cantera/data/nDodecane_Reitz.cti -> ../../build/python/cantera/data >copying cantera/data/silicon.xml -> ../../build/python/cantera/data >copying cantera/data/silane.xml -> ../../build/python/cantera/data >copying cantera/data/h2o2.cti -> ../../build/python/cantera/data >copying cantera/data/diamond.cti -> ../../build/python/cantera/data >copying cantera/data/nDodecane_Reitz.xml -> ../../build/python/cantera/data >copying cantera/data/ohn.yaml -> ../../build/python/cantera/data >copying cantera/data/ohn.cti -> ../../build/python/cantera/data >copying cantera/data/sofc.cti -> ../../build/python/cantera/data >copying cantera/data/methane_pox_on_pt.yaml -> ../../build/python/cantera/data >copying cantera/data/silicon_carbide.cti -> ../../build/python/cantera/data >copying cantera/data/gri30.cti -> ../../build/python/cantera/data >copying cantera/data/diamond.xml -> ../../build/python/cantera/data >copying cantera/data/lithium_ion_battery.yaml -> ../../build/python/cantera/data >copying cantera/data/critProperties.xml -> ../../build/python/cantera/data >copying cantera/data/silicon.cti -> ../../build/python/cantera/data >copying cantera/data/h2o2.xml -> ../../build/python/cantera/data >copying cantera/data/methane_pox_on_pt.xml -> ../../build/python/cantera/data >copying cantera/data/lithium_ion_battery.xml -> ../../build/python/cantera/data >copying cantera/data/nasa_condensed.xml -> ../../build/python/cantera/data >copying cantera/data/KOH.xml -> ../../build/python/cantera/data >copying cantera/data/gri30_ion.xml -> ../../build/python/cantera/data >copying cantera/data/nasa.xml -> ../../build/python/cantera/data >copying cantera/data/diamond.yaml -> ../../build/python/cantera/data >copying cantera/data/ohn.xml -> ../../build/python/cantera/data >copying cantera/data/argon.cti -> ../../build/python/cantera/data >copying cantera/data/argon.xml -> ../../build/python/cantera/data >copying cantera/data/h2o2.yaml -> ../../build/python/cantera/data >copying cantera/data/gri30_ion.cti -> ../../build/python/cantera/data >copying cantera/data/KOH.cti -> ../../build/python/cantera/data >copying cantera/data/gri30_ion.yaml -> ../../build/python/cantera/data >copying cantera/data/water.yaml -> ../../build/python/cantera/data >copying cantera/data/silicon_carbide.xml -> ../../build/python/cantera/data >copying cantera/data/ptcombust.cti -> ../../build/python/cantera/data >copying cantera/data/lithium_ion_battery.cti -> ../../build/python/cantera/data >copying cantera/data/graphite.cti -> ../../build/python/cantera/data >copying cantera/data/gri30_highT.cti -> ../../build/python/cantera/data >copying cantera/data/KOH.yaml -> ../../build/python/cantera/data >copying cantera/data/graphite.xml -> ../../build/python/cantera/data >copying cantera/data/water.cti -> ../../build/python/cantera/data >copying cantera/data/nasa_gas.yaml -> ../../build/python/cantera/data >creating ../../build/python/cantera/data/sample-data >copying cantera/data/sample-data/LiC6_electrodebulk.yaml -> ../../build/python/cantera/data/sample-data >copying cantera/test/data/liquid-water.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/duplicate-reactions.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/nasa9-test-subset.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/undeclared-duplicate-reactions.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/IdealSolidSolnPhaseExample.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/BinarySolutionTabulatedThermo.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/units-default.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/ch4_ion.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/unterminated-sections2.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/h2o2-extra-column-entries-tran.dat -> ../../build/python/cantera/test/data >copying cantera/test/data/duplicate-thermo.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/blank_line_in_header.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/sri_convert_test.txt -> ../../build/python/cantera/test/data >copying cantera/test/data/h2o2_emptyReactions.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/duplicate-speciesData-ids.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/unrecognized-section.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/equilibrium.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/nasa9-test-therm.dat -> ../../build/python/cantera/test/data >copying cantera/test/data/RedlichKisterVPSSTP_valid.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/pdep-test.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/noxNeg.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/negative-rate.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/h2o2_unbalancedReaction.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/MaskellSolidSolnPhase_valid.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/explicit-reverse-rate.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/simplephases.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/h2o2-float-geometry-tran.dat -> ../../build/python/cantera/test/data >copying cantera/test/data/h2o2_missingElement.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/ptcombust-motzwise.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/explicit-forward-order.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/ch4_ion.yaml -> ../../build/python/cantera/test/data >copying cantera/test/data/surface1-gas-noreac.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/float-stoich.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/WallKinetics-coverages-regression1.csv -> ../../build/python/cantera/test/data >copying cantera/test/data/DiffusionFlameTest-h2-auto.csv -> ../../build/python/cantera/test/data >copying cantera/test/data/unterminated-sections.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/phase-reaction-spec1.yaml -> ../../build/python/cantera/test/data >copying cantera/test/data/photo-reaction.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/air-no-reactions.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/CombustorTest-integrateWithAdvance.csv -> ../../build/python/cantera/test/data >copying cantera/test/data/pdss_hkft.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/pdep-test.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/nasa9-test-subset.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/invalid.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/chemically-activated-reaction.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/sofc-test.csv -> ../../build/python/cantera/test/data >copying cantera/test/data/IdealMolalSolnPhaseExample.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/units-custom.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/h2o2-plus.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/big_element_num_err.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/diamond_cvd.csv -> ../../build/python/cantera/test/data >copying cantera/test/data/ch4_ion.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/bad-troe.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/soot-therm.dat -> ../../build/python/cantera/test/data >copying cantera/test/data/with-transport.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/h2o2-bad-geometry-tran.dat -> ../../build/python/cantera/test/data >copying cantera/test/data/steam-reforming.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/duplicate-species.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/gri30_thermo.dat -> ../../build/python/cantera/test/data >copying cantera/test/data/surface1-gas.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/soot.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/steam-reforming.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/noninteger-atomicity.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/koh-equil-TP.csv -> ../../build/python/cantera/test/data >copying cantera/test/data/LiKCl_liquid.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/h2o2.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/ideal-gas.yaml -> ../../build/python/cantera/test/data >copying cantera/test/data/reaction-orders.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/explicit-third-bodies.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/Li7Si3_ls.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/co2_RK_example.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/explicit-reverse-rate.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/negative-order.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/photo-reaction.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/HMW_NaCl_sp1977_alt.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/gri30.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/WallKinetics-coverages-regression2.csv -> ../../build/python/cantera/test/data >copying cantera/test/data/reaction-orders.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/h2o2-missing-species-tran.dat -> ../../build/python/cantera/test/data >copying cantera/test/data/transport_models_test.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/phase-reaction-spec2.yaml -> ../../build/python/cantera/test/data >copying cantera/test/data/sri-falloff.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/explicit-third-bodies.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/h2o2-duplicate-species-tran.dat -> ../../build/python/cantera/test/data >copying cantera/test/data/air-no-reactions.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/gri30_tran.dat -> ../../build/python/cantera/test/data >copying cantera/test/data/CounterflowPremixedFlame-h2-mix.csv -> ../../build/python/cantera/test/data >copying cantera/test/data/debye-huckel-all.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/frac.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/mock_ion.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/DiffusionFlameTest-h2-mix.csv -> ../../build/python/cantera/test/data >copying cantera/test/data/MaskellSolidSolnPhase_nohmix.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/LiFixed.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/chemically-activated-reaction.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/co2_RK_lookup.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/soot.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/thermo-models.yaml -> ../../build/python/cantera/test/data >copying cantera/test/data/co2_RK_example.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/species-names.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/kineticsfromscratch.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/sri-falloff.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/ptcombust-simple.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/custom-elements.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/addReactions_err_test.yaml -> ../../build/python/cantera/test/data >copying cantera/test/data/gasNASA9.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/ptcombust-motzwise.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/duplicate-reactionData-ids.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/surface1.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/third_body_plus_falloff_reaction.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/negative-order.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/koh-equil-HP.csv -> ../../build/python/cantera/test/data >copying cantera/test/data/nasa9-test.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/dummy-thermo.dat -> ../../build/python/cantera/test/data >copying cantera/test/data/invalid-equation.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/NaCl_Solid.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/h2o2_missingThermo.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/DiffusionFlameTest-h2-mix-rad.csv -> ../../build/python/cantera/test/data >copying cantera/test/data/explicit-forward-order.inp -> ../../build/python/cantera/test/data >copying cantera/test/data/Li_Liquid.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/nasa9-test.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/noxNeg.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/pdep-test.cti -> ../../build/python/cantera/test/data >copying cantera/test/data/species-names.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/extra.yaml -> ../../build/python/cantera/test/data >copying cantera/test/data/WallTest-integrateWithAdvance.csv -> ../../build/python/cantera/test/data >copying cantera/test/data/sofc-test.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/surface-phases.yaml -> ../../build/python/cantera/test/data >copying cantera/test/data/frac.xml -> ../../build/python/cantera/test/data >copying cantera/test/data/gas-carbon-equil.csv -> ../../build/python/cantera/test/data >creating ../../build/python/cantera/test/data/test_subdir >copying cantera/test/data/test_subdir/species-elements.yaml -> ../../build/python/cantera/test/data/test_subdir >creating ../../build/python/cantera/examples/onedim >copying cantera/examples/onedim/burner_flame.py -> ../../build/python/cantera/examples/onedim >copying cantera/examples/onedim/flame_fixed_T.py -> ../../build/python/cantera/examples/onedim >copying cantera/examples/onedim/tdata.dat -> ../../build/python/cantera/examples/onedim >copying cantera/examples/onedim/stagnation_flame.py -> ../../build/python/cantera/examples/onedim >copying cantera/examples/onedim/premixed_counterflow_flame.py -> ../../build/python/cantera/examples/onedim >copying cantera/examples/onedim/flamespeed_sensitivity.py -> ../../build/python/cantera/examples/onedim >copying cantera/examples/onedim/premixed_counterflow_twin_flame.py -> ../../build/python/cantera/examples/onedim >copying cantera/examples/onedim/diffusion_flame_extinction.py -> ../../build/python/cantera/examples/onedim >copying cantera/examples/onedim/diffusion_flame_batch.py -> ../../build/python/cantera/examples/onedim >copying cantera/examples/onedim/diffusion_flame.py -> ../../build/python/cantera/examples/onedim >copying cantera/examples/onedim/ion_burner_flame.py -> ../../build/python/cantera/examples/onedim >copying cantera/examples/onedim/ion_free_flame.py -> ../../build/python/cantera/examples/onedim >copying cantera/examples/onedim/adiabatic_flame.py -> ../../build/python/cantera/examples/onedim >creating ../../build/python/cantera/examples/kinetics >copying cantera/examples/kinetics/mechanism_reduction.py -> ../../build/python/cantera/examples/kinetics >copying cantera/examples/kinetics/reaction_path.py -> ../../build/python/cantera/examples/kinetics >copying cantera/examples/kinetics/extract_submechanism.py -> ../../build/python/cantera/examples/kinetics >creating ../../build/python/cantera/examples/multiphase >copying cantera/examples/multiphase/adiabatic.py -> ../../build/python/cantera/examples/multiphase >copying cantera/examples/multiphase/plasma_equilibrium.py -> ../../build/python/cantera/examples/multiphase >creating ../../build/python/cantera/examples/thermo >copying cantera/examples/thermo/sound_speed.py -> ../../build/python/cantera/examples/thermo >copying cantera/examples/thermo/isentropic.py -> ../../build/python/cantera/examples/thermo >copying cantera/examples/thermo/mixing.py -> ../../build/python/cantera/examples/thermo >copying cantera/examples/thermo/rankine.py -> ../../build/python/cantera/examples/thermo >copying cantera/examples/thermo/critical_properties.py -> ../../build/python/cantera/examples/thermo >copying cantera/examples/thermo/vapordome.py -> ../../build/python/cantera/examples/thermo >copying cantera/examples/thermo/equivalenceRatio.py -> ../../build/python/cantera/examples/thermo >creating ../../build/python/cantera/examples/surface_chemistry >copying cantera/examples/surface_chemistry/sofc.py -> ../../build/python/cantera/examples/surface_chemistry >copying cantera/examples/surface_chemistry/catalytic_combustion.py -> ../../build/python/cantera/examples/surface_chemistry >copying cantera/examples/surface_chemistry/diamond_cvd.py -> ../../build/python/cantera/examples/surface_chemistry >creating ../../build/python/cantera/examples/reactors >copying cantera/examples/reactors/combustor.py -> ../../build/python/cantera/examples/reactors >copying cantera/examples/reactors/reactor1.py -> ../../build/python/cantera/examples/reactors >copying cantera/examples/reactors/pfr.py -> ../../build/python/cantera/examples/reactors >copying cantera/examples/reactors/fuel_injection.py -> ../../build/python/cantera/examples/reactors >copying cantera/examples/reactors/ic_engine.py -> ../../build/python/cantera/examples/reactors >copying cantera/examples/reactors/sensitivity1.py -> ../../build/python/cantera/examples/reactors >copying cantera/examples/reactors/reactor2.py -> ../../build/python/cantera/examples/reactors >copying cantera/examples/reactors/periodic_cstr.py -> ../../build/python/cantera/examples/reactors >copying cantera/examples/reactors/piston.py -> ../../build/python/cantera/examples/reactors >copying cantera/examples/reactors/surf_pfr.py -> ../../build/python/cantera/examples/reactors >copying cantera/examples/reactors/custom.py -> ../../build/python/cantera/examples/reactors >copying cantera/examples/reactors/mix1.py -> ../../build/python/cantera/examples/reactors >copying cantera/examples/reactors/NonIdealShockTube.py -> ../../build/python/cantera/examples/reactors >creating ../../build/python/cantera/examples/transport >copying cantera/examples/transport/multiprocessing_viscosity.py -> ../../build/python/cantera/examples/transport >copying cantera/examples/transport/dusty_gas.py -> ../../build/python/cantera/examples/transport >warning: build_py: byte-compiling is disabled, skipping. > >postBuildMessage(["finish_build"], []) >******************************************************* >Compilation completed successfully. > >- To run the test suite, type 'scons test'. >- To install, type 'scons install'. >******************************************************* >scons: done building targets. >>>> Source compiled. >>>> Test phase: sci-libs/cantera-2.5.1 >scons -j36 test >scons: Reading SConscript files ... >INFO: SCons is using the following Python interpreter: /usr/bin/python3.8 >Configuration variables read from 'cantera.conf' and command line: > CXX = 'x86_64-pc-linux-gnu-g++' > CC = 'x86_64-pc-linux-gnu-gcc' > prefix = '/usr' > python_package = 'full' > python_cmd = 'python3.8' > f90_interface = 'y' > FORTRAN = 'x86_64-pc-linux-gnu-gfortran' > FORTRANFLAGS = '-O2 -pipe -march=x86-64 -frecord-gcc-switches' > system_eigen = 'y' > system_fmt = 'y' > system_yamlcpp = 'y' > system_sundials = 'y' > env_vars = 'all' > use_pch = False > cxx_flags = '-std=c++11' > cc_flags = '-O2 -pipe -march=x86-64 -frecord-gcc-switches' > optimize_flags = '-Wno-inline' > debug = False > extra_inc_dirs = '/usr/include/eigen3' > renamed_shared_libraries = False > >Checking for C++ header file cmath... (cached) yes >Checking for C++ header file fmt/ostream.h... (cached) yes >INFO: Using system installation of fmt library. >INFO: Found fmt version 7.1.3 >Checking for C++ header file yaml-cpp/yaml.h... (cached) yes >INFO: Using system installation of yaml-cpp library. >Checking for C++ header file gtest/gtest.h... (cached) yes >Checking for C++ header file gmock/gmock.h... (cached) yes >INFO: Using system installation of Googletest >Checking for C++ header file Eigen/Dense... (cached) yes >INFO: Using system installation of Eigen. >INFO: Found Eigen version 3.3.9 >Checking whether __GLIBCXX__ is declared... (cached) yes >Checking whether __clang__ is declared... (cached) no >Checking for C++ header file omp.h... (cached) yes >INFO: Found Boost version 1.75 >Checking whether boost::core::demangle is declared... (cached) yes >Checking for CVodeCreate(CV_BDF, CV_NEWTON) in C++ library sundials_cvodes... (cached) no >Checking for CVodeCreate(CV_BDF) in C++ library sundials_cvodes... (cached) yes >Checking for double x; log(x) in C library None... (cached) no >INFO: Using system installation of Sundials version 5.2.0. >Checking whether SUNDIALS_BLAS_LAPACK is declared... (cached) no >INFO: Using 'x86_64-pc-linux-gnu-gfortran' to build the Fortran 90 interface >INFO: Using NumPy version 1.19.5. >INFO: Using Cython version 0.29.22. >INFO: Building the full Python package for Python 3.8 >target.dir:/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/lib >target.dir:/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/lib >target.dir:/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/lib >target.dir:/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/lib >scons: done reading SConscript files. >scons: Building targets ... >ConfigBuilder(["build/src/config.h.build"], ["include/cantera/base/config.h.in"]) >Generating build/src/config.h.build with the following settings: > CANTERA_SHORT_VERSION "2.5" > CANTERA_VERSION "2.5.1" > CT_SUNDIALS_USE_LAPACK 0 > CT_SUNDIALS_VERSION 52 > CT_USE_DEMANGLE 1 > CT_USE_SYSTEM_EIGEN 1 > CT_USE_SYSTEM_FMT 1 > CT_USE_SYSTEM_YAMLCPP 1 > FTN_TRAILING_UNDERSCORE 1 > LAPACK_FTN_STRING_LEN_AT_END 1 > LAPACK_FTN_TRAILING_UNDERSCORE 1 > LAPACK_NAMES_LOWERCASE 1 > NEEDS_GENERIC_TEMPL_STATIC_DECL *undefined* >x86_64-pc-linux-gnu-gfortran -o build/samples/f77/isentropic.o -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -Jbuild/samples/f77 samples/f77/isentropic.f >x86_64-pc-linux-gnu-gfortran -o build/samples/f77/ctlib.o -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -Jbuild/samples/f77 samples/f77/ctlib.f >x86_64-pc-linux-gnu-g++ -o build/test/thermo/phaseConstructors.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/thermo/phaseConstructors.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/VPsilane_test/silane_equil.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/VPsilane_test/silane_equil.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/HMW_graph_HvT/HMW_graph_HvT.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/cathermo/HMW_graph_HvT/HMW_graph_HvT.cpp >x86_64-pc-linux-gnu-g++ -o build/test/thermo/nasapoly.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/thermo/nasapoly.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/HMW_graph_GvT/HMW_graph_GvT.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/cathermo/HMW_graph_GvT/HMW_graph_GvT.cpp >x86_64-pc-linux-gnu-g++ -o build/samples/cxx/rankine/rankine.o -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -DNDEBUG -Iinclude -I/usr/include/eigen3 samples/cxx/rankine/rankine.cpp >x86_64-pc-linux-gnu-gcc -o test_problems/clib_test/clib_test.o -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/clib_test/clib_test.c >x86_64-pc-linux-gnu-g++ -o build/test/thermo/ThermoPhase_Test.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/thermo/ThermoPhase_Test.cpp >x86_64-pc-linux-gnu-g++ -o build/samples/cxx/bvp/blasius.o -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -DNDEBUG -Iinclude -I/usr/include/eigen3 samples/cxx/bvp/blasius.cpp >x86_64-pc-linux-gnu-g++ -o build/test/general/test_xml.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/general/test_xml.cpp >x86_64-pc-linux-gnu-g++ -o build/samples/cxx/demo/demo.o -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -DNDEBUG -Iinclude -I/usr/include/eigen3 samples/cxx/demo/demo.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/surfSolverTest/surfaceSolver2.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/surfSolverTest/surfaceSolver2.cpp >x86_64-pc-linux-gnu-g++ -o build/test/thermo/RedlichKwongMFTP_Test.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/thermo/RedlichKwongMFTP_Test.cpp >x86_64-pc-linux-gnu-g++ -o build/samples/cxx/flamespeed/flamespeed.o -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -DNDEBUG -Iinclude -I/usr/include/eigen3 samples/cxx/flamespeed/flamespeed.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/testWaterPDSS/testWaterPDSS.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/cathermo/testWaterPDSS/testWaterPDSS.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/stoichSub/stoichSub.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/cathermo/stoichSub/stoichSub.cpp >x86_64-pc-linux-gnu-g++ -o build/test/equil/equil_gas.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/equil/equil_gas.cpp >x86_64-pc-linux-gnu-g++ -o build/test/general/test_units.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/general/test_units.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/issp/ISSPTester.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/cathermo/issp/ISSPTester.cpp >x86_64-pc-linux-gnu-g++ -o build/test/transport/transportModels.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/transport/transportModels.cpp >x86_64-pc-linux-gnu-g++ -o build/test/general/test_numerics.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/general/test_numerics.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/mixGasTransport/mixGasTransport.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/mixGasTransport/mixGasTransport.cpp >x86_64-pc-linux-gnu-g++ -o build/test/thermo/RedlichKisterTest.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/thermo/RedlichKisterTest.cpp >x86_64-pc-linux-gnu-g++ -o build/test/kinetics/rates.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/kinetics/rates.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/DH_graph_1/DH_graph_1.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/cathermo/DH_graph_1/DH_graph_1.cpp >x86_64-pc-linux-gnu-g++ -o build/samples/cxx/gas_transport/gas_transport.o -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -DNDEBUG -Iinclude -I/usr/include/eigen3 samples/cxx/gas_transport/gas_transport.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/dustyGasTransport/dustyGasTransportTest.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/dustyGasTransport/dustyGasTransportTest.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/surfSolverTest/surfaceSolver.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/surfSolverTest/surfaceSolver.cpp >x86_64-pc-linux-gnu-g++ -o build/test/thermo/MaskellSolidSolnPhase_Test.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/thermo/MaskellSolidSolnPhase_Test.cpp >x86_64-pc-linux-gnu-g++ -o build/test/kinetics/pdep.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/kinetics/pdep.cpp >x86_64-pc-linux-gnu-g++ -o build/samples/cxx/LiC6_electrode/LiC6_electrode.o -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -DNDEBUG -Iinclude -I/usr/include/eigen3 samples/cxx/LiC6_electrode/LiC6_electrode.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/diamondSurf/runDiamond.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/diamondSurf/runDiamond.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/VCSnonideal/LatticeSolid_LiSi/latsol.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/VCSnonideal/LatticeSolid_LiSi/latsol.cpp >x86_64-pc-linux-gnu-g++ -o build/test/general/test_matrices.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/general/test_matrices.cpp >x86_64-pc-linux-gnu-g++ -o build/test/thermo/BinarySolutionTabulatedThermo_Test.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/thermo/BinarySolutionTabulatedThermo_Test.cpp >x86_64-pc-linux-gnu-g++ -o build/samples/cxx/openmp_ignition/openmp_ignition.o -c -std=c++11 -fopenmp -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -DNDEBUG -Iinclude -I/usr/include/eigen3 samples/cxx/openmp_ignition/openmp_ignition.cpp >x86_64-pc-linux-gnu-g++ -o build/test/kinetics/kineticsFromYaml.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/kinetics/kineticsFromYaml.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/VCSnonideal/NaCl_equil/nacl_equil.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/VCSnonideal/NaCl_equil/nacl_equil.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/multiGasTransport/multiGasTransport.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/multiGasTransport/multiGasTransport.cpp >x86_64-pc-linux-gnu-g++ -o build/test/general/test_containers.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/general/test_containers.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/HMW_graph_VvT/HMW_graph_VvT.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/cathermo/HMW_graph_VvT/HMW_graph_VvT.cpp >x86_64-pc-linux-gnu-g++ -o build/samples/f77/demo_ftnlib.os -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -fPIC -DNDEBUG -Iinclude -I/usr/include/eigen3 samples/f77/demo_ftnlib.cpp >x86_64-pc-linux-gnu-g++ -o build/test/kinetics/kineticsFromScratch.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/kinetics/kineticsFromScratch.cpp >x86_64-pc-linux-gnu-g++ -o build/samples/cxx/combustor/combustor.o -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -DNDEBUG -Iinclude -I/usr/include/eigen3 samples/cxx/combustor/combustor.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/pureFluidTest/testPureWater.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/pureFluidTest/testPureWater.cpp >x86_64-pc-linux-gnu-g++ -o build/samples/cxx/kinetics1/kinetics1.o -c -std=c++11 -O2 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -DNDEBUG -Iinclude -I/usr/include/eigen3 samples/cxx/kinetics1/kinetics1.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/testWaterTP/testWaterSSTP.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/cathermo/testWaterTP/testWaterSSTP.cpp >x86_64-pc-linux-gnu-g++ -o build/test/transport/transportFromScratch.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/transport/transportFromScratch.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/ChemEquil_ionizedGas/ionizedGasEquil.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/ChemEquil_ionizedGas/ionizedGasEquil.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/silane_equil/silane_equil.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/silane_equil/silane_equil.cpp >x86_64-pc-linux-gnu-g++ -o build/test/thermo/water_iapws.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/thermo/water_iapws.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/VPissp/ISSPTester.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/cathermo/VPissp/ISSPTester.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/stoichSolidKinetics/stoichSolidKinetics.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/stoichSolidKinetics/stoichSolidKinetics.cpp >x86_64-pc-linux-gnu-gfortran -o build/samples/f90/demo.o -c -O2 -pipe -march=x86-64 -frecord-gcc-switches -Ibuild/src/fortran -Isrc/fortran -Isrc/fortran -Jbuild/samples/f90 samples/f90/demo.f90 >x86_64-pc-linux-gnu-g++ -o build/test/thermo/thermoParameterizations.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/thermo/thermoParameterizations.cpp >x86_64-pc-linux-gnu-g++ -o build/test/general/string_processing.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/general/string_processing.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/surfkin/surfdemo.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/surfkin/surfdemo.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/ims/IMSTester.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/cathermo/ims/IMSTester.cpp >x86_64-pc-linux-gnu-g++ -o build/test/thermo/thermoFromYaml.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -I/usr/include/eigen3 test/thermo/thermoFromYaml.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/HMW_graph_GvI/HMW_graph_GvI.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/cathermo/HMW_graph_GvI/HMW_graph_GvI.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/HMW_test_3/HMW_test_3.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/cathermo/HMW_test_3/HMW_test_3.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/HMW_graph_CpvT/HMW_graph_CpvT.o -c -std=c++11 -pipe -march=x86-64 -frecord-gcc-switches -pthread -Wno-inline -Wall -DNDEBUG -Iinclude -Isrc -Itest_problems/shared -I/usr/include/eigen3 test_problems/cathermo/HMW_graph_CpvT/HMW_graph_CpvT.cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/HMW_graph_HvT/HMW_graph_HvT -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/cathermo/HMW_graph_HvT/HMW_graph_HvT.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >x86_64-pc-linux-gnu-g++ -o test_problems/VCSnonideal/NaCl_equil/nacl_equil -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/VCSnonideal/NaCl_equil/nacl_equil.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >x86_64-pc-linux-gnu-g++ -o build/test/equil/equil -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread build/test/equil/equil_gas.o -Lbuild/lib -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp -lgtest -lgmock >x86_64-pc-linux-gnu-g++ -o test_problems/surfSolverTest/surfaceSolver2 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/surfSolverTest/surfaceSolver2.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >x86_64-pc-linux-gnu-g++ -o test_problems/mixGasTransport/mixGasTransport -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/mixGasTransport/mixGasTransport.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/DH_graph_1/DH_graph_1 -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/cathermo/DH_graph_1/DH_graph_1.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >x86_64-pc-linux-gnu-gcc -o test_problems/clib_test/clib_test -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/clib_test/clib_test.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >x86_64-pc-linux-gnu-g++ -o test_problems/diamondSurf/diamondSurf -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/diamondSurf/runDiamond.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >x86_64-pc-linux-gnu-g++ -o test_problems/multiGasTransport/multiGasTransport -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/multiGasTransport/multiGasTransport.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >x86_64-pc-linux-gnu-g++ -o test_problems/dustyGasTransport/dustyGasTransport -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/dustyGasTransport/dustyGasTransportTest.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >x86_64-pc-linux-gnu-g++ -o test_problems/VPsilane_test/VPsilane_test -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/VPsilane_test/silane_equil.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/testWaterPDSS/WaterPDSS -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/cathermo/testWaterPDSS/testWaterPDSS.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/stoichSub/stoichSub -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/cathermo/stoichSub/stoichSub.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/issp/ISSPTester -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/cathermo/issp/ISSPTester.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >scriptRunner(["build/test/python/python.passed"], ["test/python/runCythonTests.py"]) >x86_64-pc-linux-gnu-g++ -o build/samples/cxx/gas_transport/gas_transport -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread build/samples/cxx/gas_transport/gas_transport.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/HMW_graph_GvT/HMW_graph_GvT -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/cathermo/HMW_graph_GvT/HMW_graph_GvT.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >x86_64-pc-linux-gnu-g++ -o test_problems/surfSolverTest/surfaceSolver -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/surfSolverTest/surfaceSolver.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >* Running test 'surfSolver2'... >* Running test 'stoichSub'... >Comparing 'output_blessed.txt' with 'output_output.txt' >PASSED >* Running test 'mixGasTransport'... >* Running test 'ISSPTester'... >Comparing 'output_blessed.txt' with 'output_output.txt' >PASSED >* Running test 'VCS-NaCl'... >Comparing 'good_out.txt' with 'test_output.txt' >PASSED >* Running test 'DH_graph_acommon'... >Comparing 'DH_NaCl_acommon_blessed.csv' with 'DH_NaCl_acommon_output.csv' >PASSED >* Running test 'WaterPDSS'... >* Running test 'cxx-gas-transport'... >Comparing 'output_blessed.txt' with 'output_output.txt' >PASSED >* Running test 'DH_graph_Pitzer'... >* Running test 'HMW_graph_GvT'... >Comparing 'DH_NaCl_Pitzer_blessed.csv' with 'DH_NaCl_Pitzer_output.csv' >PASSED >Comparing 'output_blessed.txt' with 'output_output.txt' >* Running test 'DH_graph_bdotak'... >PASSED >* Running test 'clib'... >Comparing 'DH_NaCl_bdotak_blessed.csv' with 'DH_NaCl_bdotak_output.csv' >* Running test 'surfSolver'... >PASSED >Comparing 'output_blessed.txt' with 'output_output.txt' >PASSED >x86_64-pc-linux-gnu-gfortran -o build/samples/f90/demo -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread build/samples/f90/demo.o -Lbuild/lib -lcantera_fortran -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp -lstdc++ >* Running test 'diamondSurf-xml'... >Comparing 'runDiamond_blessed.out' with 'runDiamond_output.out' >PASSED >gtestRunner(["build/test/equil/equil.passed"], ["build/test/equil/equil"]) >Running main() from equil_gas.cpp >[==========] Running 30 tests from 3 test suites. >[----------] Global test environment set-up. >[----------] 3 tests from OverconstrainedEquil >[ RUN ] OverconstrainedEquil.ChemEquil >Traceback (most recent call last): > File "/usr/lib/python3.8/site-packages/pandas/__init__.py", line 29, in <module> > from pandas._libs import hashtable as _hashtable, lib as _lib, tslib as _tslib > File "/usr/lib/python3.8/site-packages/pandas/_libs/__init__.py", line 13, in <module> > from pandas._libs.interval import Interval > File "pandas/_libs/interval.pyx", line 1, in init pandas._libs.interval > File "pandas/_libs/hashtable.pyx", line 1, in init pandas._libs.hashtable > File "pandas/_libs/missing.pyx", line 1, in init pandas._libs.missing > File "/usr/lib/python3.8/site-packages/pandas/_libs/tslibs/__init__.py", line 30, in <module> > from .conversion import OutOfBoundsTimedelta, localize_pydatetime > File "pandas/_libs/tslibs/conversion.pyx", line 58, in init pandas._libs.tslibs.conversion >ImportError: /usr/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.cpython-38-x86_64-linux-gnu.so: undefined symbol: xstrtod > >The above exception was the direct cause of the following exception: > >Traceback (most recent call last): > File "/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/test/python/runCythonTests.py", line 35, in <module> > from cantera.test.utilities import unittest > File "/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/python/cantera/__init__.py", line 6, in <module> > from .composite import * > File "/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/python/cantera/composite.py", line 25, in <module> > import pandas as _pandas > File "/usr/lib/python3.8/site-packages/pandas/__init__.py", line 33, in <module> > raise ImportError( >ImportError: C extension: /usr/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.cpython-38-x86_64-linux-gnu.so: undefined symbol: xstrtod not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --force' to build the C extensions first. >Comparing 'transport_mix_blessed.csv' with 'transport_mix.csv' >Comparing 'transport_multi_blessed.csv' with 'transport_multi.csv' >PASSED >* Running test 'f90-demo'... >* Running test 'dustyGasTransport'... >* Running test 'HMW_graph_HvT'... >* Running test 'VPsilane_test'... >Comparing 'output_blessed.txt' with 'output_output.txt' >Comparing 'f90_demo_blessed.txt' with 'f90_demo_output.txt' >* Running test 'diamondSurf-cti'... >PASSED >PASSED >Comparing 'output_blessed.txt' with 'output_output.txt' >PASSED >Comparing 'output_blessed.txt' with 'output_output.txt' >PASSED >x86_64-pc-linux-gnu-g++ -o test_problems/cathermo/HMW_graph_VvT/HMW_graph_VvT -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -pthread test_problems/cathermo/HMW_graph_VvT/HMW_graph_VvT.o -Lbuild/lib -lcantera -lsundials_cvodes -lsundials_ida -lsundials_nvecserial -lyaml-cpp >* Running test 'multiGasTransport'... >Comparing 'output_blessed.txt' with 'output_output.txt' >* Running test 'DH_graph_dilute'... >PASSED >* Running test 'DH_graph_NM'... >Comparing 'DH_NaCl_dilute_blessed.csv' with 'DH_NaCl_dilute_output.csv' >Comparing 'results2_blessed.txt' with 'results2.txt' >Comparing 'DH_NaCl_NM_blessed.csv' with 'DH_NaCl_NM_output.csv' >scons: *** [test_problems/surfSolverTest/.passed-surfSolver2] /var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/test_problems/surfSolverTest/results2.txt: No such file or directory >PASSED >PASSED >Comparing 'output_blessed.txt' with 'output_output.txt' >PASSED >FAILED (program exit code:1) >Comparing 'results_blessed.txt' with 'results.txt' >scons: *** [test_problems/surfSolverTest/.passed-surfSolver] /var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/test_problems/surfSolverTest/results.txt: No such file or directory >unknown file: Failure >C++ exception with description " >*********************************************************************** >CanteraError thrown by call_ctml_writer: >Error converting input file "<string>" to CTML. >Python command was: 'python3.8' >The exit code was: 1 >-------------- start of converter log -------------- >sys.path: ['', '/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/python', '/usr/lib/python38.zip', '/usr/lib/python3.8', '/usr/lib/python3.8/lib-dynload', '/usr/lib/python3.8/site-packages'] > >Traceback (most recent call last): > File "/usr/lib/python3.8/site-packages/pandas/__init__.py", line 29, in <module> > from pandas._libs import hashtable as _hashtable, lib as _lib, tslib as _tslib > File "/usr/lib/python3.8/site-packages/pandas/_libs/__init__.py", line 13, in <module> > from pandas._libs.interval import Interval > File "pandas/_libs/interval.pyx", line 1, in init pandas._libs.interval > File "pandas/_libs/hashtable.pyx", line 1, in init pandas._libs.hashtable > File "pandas/_libs/missing.pyx", line 1, in init pandas._libs.missing > File "/usr/lib/python3.8/site-packages/pandas/_libs/tslibs/__init__.py", line 30, in <module> > from .conversion import OutOfBoundsTimedelta, localize_pydatetime > File "pandas/_libs/tslibs/conversion.pyx", line 58, in init pandas._libs.tslibs.conversion >ImportError: /usr/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.cpython-38-x86_64-linux-gnu.so: undefined symbol: xstrtod > >The above exception was the direct cause of the following exception: > >Traceback (most recent call last): > File "<stdin>", line 5, in <module> > File "/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/python/cantera/__init__.py", line 6, in <module> > from .composite import * > File "/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/python/cantera/composite.py", line 25, in <module> > import pandas as _pandas > File "/usr/lib/python3.8/site-packages/pandas/__init__.py", line 33, in <module> > raise ImportError( >ImportError: C extension: /usr/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.cpython-38-x86_64-linux-gnu.so: undefined symbol: xstrtod not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --force' to build the C extensions first. >--------------- end of converter log --------------- >*********************************************************************** >" thrown in the test body. >[ FAILED ] OverconstrainedEquil.ChemEquil (447 ms) >[ RUN ] OverconstrainedEquil.VcsNonideal >Comparing 'runDiamond_blessed.out' with 'runDiamond_output.out' >Found differences between /var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/test_problems/diamondSurf/runDiamond_blessed.out and /var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/test_problems/diamondSurf/runDiamond_output.out: >>>> >--- > >+++ > >@@ -1,28 +1,36 @@ > >-Number of species = 4 >-Number of species in diamond = 1 >-Number of species in diamond_100 = 8 >-Number of reactions = 20 >-0 1 -8.96e-05 >-1 2 4.486e-05 >-2 3 -3.801e-08 >-3 4 nil >-4 0 3.801e-08 >-5 2 nil >-6 1 nil >-7 1 nil >-8 0 nil >-9 4 nil >-10 3 nil >-11 3 nil >-12 2 nil >-sum = nil >-growth rate = 0.4669 microns per hour >-Coverages: >-0 c6HH 0.4622 >-1 c6H* 0.03704 >-2 c6*H 0.4742 >-3 c6** 0.02194 >-4 c6HM 0.001731 >-5 c6HM* 2.772e-05 >-6 c6*M 0.002864 >-7 c6B 1.267e-09 >+ >+*********************************************************************** >+CanteraError thrown by call_ctml_writer: >+Error converting input file "/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/data/diamond.cti" to CTML. >+Python command was: 'python3.8' >+The exit code was: 1 >+-------------- start of converter log -------------- >+sys.path: ['', '/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/python', '/usr/lib/python38.zip', '/usr/lib/python3.8', '/usr/lib/python3.8/lib-dynload', '/usr/lib/python3.8/site-packages'] >+ >+Traceback (most recent call last): >+ File "/usr/lib/python3.8/site-packages/pandas/__init__.py", line 29, in <module> >+ from pandas._libs import hashtable as _hashtable, lib as _lib, tslib as _tslib >+ File "/usr/lib/python3.8/site-packages/pandas/_libs/__init__.py", line 13, in <module> >+ from pandas._libs.interval import Interval >+ File "pandas/_libs/interval.pyx", line 1, in init pandas._libs.interval >+ File "pandas/_libs/hashtable.pyx", line 1, in init pandas._libs.hashtable >+ File "pandas/_libs/missing.pyx", line 1, in init pandas._libs.missing >+ File "/usr/lib/python3.8/site-packages/pandas/_libs/tslibs/__init__.py", line 30, in <module> >+ from .conversion import OutOfBoundsTimedelta, localize_pydatetime >+ File "pandas/_libs/tslibs/conversion.pyx", line 58, in init pandas._libs.tslibs.conversion >+ImportError: /usr/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.cpython-38-x86_64-linux-gnu.so: undefined symbol: xstrtod >+ >+The above exception was the direct cause of the following exception: >+ >+Traceback (most recent call last): >+ File "<stdin>", line 5, in <module> >+ File "/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/python/cantera/__init__.py", line 6, in <module> >+ from .composite import * >+ File "/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/python/cantera/composite.py", line 25, in <module> >+ import pandas as _pandas >+ File "/usr/lib/python3.8/site-packages/pandas/__init__.py", line 33, in <module> >+ raise ImportError( >+ImportError: C extension: /usr/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.cpython-38-x86_64-linux-gnu.so: undefined symbol: xstrtod not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --force' to build the C extensions first. >+--------------- end of converter log --------------- >+*********************************************************************** >+ ><<< >FAILED >unknown file: Failure >C++ exception with description " >*********************************************************************** >CanteraError thrown by call_ctml_writer: >Error converting input file "<string>" to CTML. >Python command was: 'python3.8' >The exit code was: 1 >-------------- start of converter log -------------- >sys.path: ['', '/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/python', '/usr/lib/python38.zip', '/usr/lib/python3.8', '/usr/lib/python3.8/lib-dynload', '/usr/lib/python3.8/site-packages'] > >Traceback (most recent call last): > File "/usr/lib/python3.8/site-packages/pandas/__init__.py", line 29, in <module> > from pandas._libs import hashtable as _hashtable, lib as _lib, tslib as _tslib > File "/usr/lib/python3.8/site-packages/pandas/_libs/__init__.py", line 13, in <module> > from pandas._libs.interval import Interval > File "pandas/_libs/interval.pyx", line 1, in init pandas._libs.interval > File "pandas/_libs/hashtable.pyx", line 1, in init pandas._libs.hashtable > File "pandas/_libs/missing.pyx", line 1, in init pandas._libs.missing > File "/usr/lib/python3.8/site-packages/pandas/_libs/tslibs/__init__.py", line 30, in <module> > from .conversion import OutOfBoundsTimedelta, localize_pydatetime > File "pandas/_libs/tslibs/conversion.pyx", line 58, in init pandas._libs.tslibs.conversion >ImportError: /usr/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.cpython-38-x86_64-linux-gnu.so: undefined symbol: xstrtod > >The above exception was the direct cause of the following exception: > >Traceback (most recent call last): > File "<stdin>", line 5, in <module> > File "/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/python/cantera/__init__.py", line 6, in <module> > from .composite import * > File "/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/python/cantera/composite.py", line 25, in <module> > import pandas as _pandas > File "/usr/lib/python3.8/site-packages/pandas/__init__.py", line 33, in <module> > raise ImportError( >ImportError: C extension: /usr/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.cpython-38-x86_64-linux-gnu.so: undefined symbol: xstrtod not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --force' to build the C extensions first. >--------------- end of converter log --------------- >*********************************************************************** >" thrown in the test body. >[ FAILED ] OverconstrainedEquil.VcsNonideal (299 ms) >[ RUN ] OverconstrainedEquil.BasisOptimize >unknown file: Failure >C++ exception with description " >*********************************************************************** >CanteraError thrown by call_ctml_writer: >Error converting input file "<string>" to CTML. >Python command was: 'python3.8' >The exit code was: 1 >-------------- start of converter log -------------- >sys.path: ['', '/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/python', '/usr/lib/python38.zip', '/usr/lib/python3.8', '/usr/lib/python3.8/lib-dynload', '/usr/lib/python3.8/site-packages'] > >Traceback (most recent call last): > File "/usr/lib/python3.8/site-packages/pandas/__init__.py", line 29, in <module> > from pandas._libs import hashtable as _hashtable, lib as _lib, tslib as _tslib > File "/usr/lib/python3.8/site-packages/pandas/_libs/__init__.py", line 13, in <module> > from pandas._libs.interval import Interval > File "pandas/_libs/interval.pyx", line 1, in init pandas._libs.interval > File "pandas/_libs/hashtable.pyx", line 1, in init pandas._libs.hashtable > File "pandas/_libs/missing.pyx", line 1, in init pandas._libs.missing > File "/usr/lib/python3.8/site-packages/pandas/_libs/tslibs/__init__.py", line 30, in <module> > from .conversion import OutOfBoundsTimedelta, localize_pydatetime > File "pandas/_libs/tslibs/conversion.pyx", line 58, in init pandas._libs.tslibs.conversion >ImportError: /usr/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.cpython-38-x86_64-linux-gnu.so: undefined symbol: xstrtod > >The above exception was the direct cause of the following exception: > >Traceback (most recent call last): > File "<stdin>", line 5, in <module> > File "/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/python/cantera/__init__.py", line 6, in <module> > from .composite import * > File "/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1/build/python/cantera/composite.py", line 25, in <module> > import pandas as _pandas > File "/usr/lib/python3.8/site-packages/pandas/__init__.py", line 33, in <module> > raise ImportError( >ImportError: C extension: /usr/lib/python3.8/site-packages/pandas/_libs/tslibs/parsing.cpython-38-x86_64-linux-gnu.so: undefined symbol: xstrtod not built. If you want to import pandas from the source directory, you may need to run 'python setup.py build_ext --force' to build the C extensions first. >--------------- end of converter log --------------- >*********************************************************************** >" thrown in the test body. >[ FAILED ] OverconstrainedEquil.BasisOptimize (385 ms) >[----------] 3 tests from OverconstrainedEquil (1132 ms total) > >[----------] 11 tests from GriMatrix >[ RUN ] GriMatrix.ChemEquil_CH4_N2 >[ OK ] GriMatrix.ChemEquil_CH4_N2 (28 ms) >[ RUN ] GriMatrix.ChemEquil_O2_N2 >[ OK ] GriMatrix.ChemEquil_O2_N2 (12 ms) >[ RUN ] GriMatrix.ChemEquil_CH4_O2_N2 >[ OK ] GriMatrix.ChemEquil_CH4_O2_N2 (11 ms) >[ RUN ] GriMatrix.ChemEquil_CH4_O2 >[ OK ] GriMatrix.ChemEquil_CH4_O2 (134 ms) >[ RUN ] GriMatrix.MultiPhase_CH4_N2 >[ OK ] GriMatrix.MultiPhase_CH4_N2 (8 ms) >[ RUN ] GriMatrix.MultiPhase_O2_N2 >[ OK ] GriMatrix.MultiPhase_O2_N2 (5 ms) >[ RUN ] GriMatrix.MultiPhase_CH4_O2_N2 >[ OK ] GriMatrix.MultiPhase_CH4_O2_N2 (72 ms) >[ RUN ] GriMatrix.VcsNonideal_CH4_N2 >[ OK ] GriMatrix.VcsNonideal_CH4_N2 (14 ms) >[ RUN ] GriMatrix.VcsNonideal_O2_N2 >[ OK ] GriMatrix.VcsNonideal_O2_N2 (6 ms) >[ RUN ] GriMatrix.VcsNonideal_CH4_O2_N2 >[ OK ] GriMatrix.VcsNonideal_CH4_O2_N2 (13 ms) >[ RUN ] GriMatrix.VcsNonideal_CH4_O2 >[ OK ] GriMatrix.VcsNonideal_CH4_O2 (536 ms) >[----------] 11 tests from GriMatrix (839 ms total) > >[----------] 16 tests from PropertyPairs >[ RUN ] PropertyPairs.ChemEquil_TP >[ OK ] PropertyPairs.ChemEquil_TP (5 ms) >[ RUN ] PropertyPairs.MultiPhase_TP >[ OK ] PropertyPairs.MultiPhase_TP (62 ms) >[ RUN ] PropertyPairs.VcsNonideal_TP >[ OK ] PropertyPairs.VcsNonideal_TP (6 ms) >[ RUN ] PropertyPairs.ChemEquil_HP >[ OK ] PropertyPairs.ChemEquil_HP (5 ms) >[ RUN ] PropertyPairs.MultiPhase_HP >[ OK ] PropertyPairs.MultiPhase_HP (9 ms) >[ RUN ] PropertyPairs.VcsNonideal_HP >[ OK ] PropertyPairs.VcsNonideal_HP (9 ms) >[ RUN ] PropertyPairs.ChemEquil_SP >[ OK ] PropertyPairs.ChemEquil_SP (5 ms) >[ RUN ] PropertyPairs.MultiPhase_SP >[ OK ] PropertyPairs.MultiPhase_SP (6 ms) >[ RUN ] PropertyPairs.VcsNonideal_SP >[ OK ] PropertyPairs.VcsNonideal_SP (6 ms) >[ RUN ] PropertyPairs.ChemEquil_SV >[ OK ] PropertyPairs.ChemEquil_SV (5 ms) >[ RUN ] PropertyPairs.VcsNonideal_SV >[ OK ] PropertyPairs.VcsNonideal_SV (17 ms) >[ RUN ] PropertyPairs.ChemEquil_TV >[ OK ] PropertyPairs.ChemEquil_TV (5 ms) >[ RUN ] PropertyPairs.MultiPhase_TV >[ OK ] PropertyPairs.MultiPhase_TV (119 ms) >[ RUN ] PropertyPairs.VcsNonideal_TV >[ OK ] PropertyPairs.VcsNonideal_TV (6 ms) >[ RUN ] PropertyPairs.ChemEquil_UV >[ OK ] PropertyPairs.ChemEquil_UV (5 ms) >[ RUN ] PropertyPairs.VcsNonideal_UV >[ OK ] PropertyPairs.VcsNonideal_UV (36 ms) >[----------] 16 tests from PropertyPairs (306 ms total) > >[----------] Global test environment tear-down >[==========] 30 tests from 3 test suites ran. (2278 ms total) >[ PASSED ] 27 tests. >[ FAILED ] 3 tests, listed below: >[ FAILED ] OverconstrainedEquil.ChemEquil >[ FAILED ] OverconstrainedEquil.VcsNonideal >[ FAILED ] OverconstrainedEquil.BasisOptimize > > 3 FAILED TESTS > YOU HAVE 3 DISABLED TESTS > >FAILED: Test 'equil' exited with code -11 >scons: building terminated because of errors. > * ERROR: sci-libs/cantera-2.5.1::gentoo failed (test phase): > * escons failed. > * > * Call stack: > * ebuild.sh, line 125: Called src_test > * environment, line 3085: Called escons 'test' > * environment, line 1481: Called die > * The specific snippet of code: > * die -n "escons failed." > * > * If you need support, post the output of `emerge --info '=sci-libs/cantera-2.5.1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-libs/cantera-2.5.1::gentoo'`. > * The complete build log is located at '/var/log/emerge-log/build/sci-libs/cantera-2.5.1:20210301-091454.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/cantera-2.5.1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-libs/cantera-2.5.1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1' > * S: '/var/tmp/portage/sci-libs/cantera-2.5.1/work/cantera-2.5.1' >
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