CMakeError.log

CMakeError.log (text/plain), 6.73 KB, created by Toralf Förster on 2021-01-02 20:55:33 UTC

The MPI test test_mpi for CXX in mode normal failed to compile with the following output:
Change Dir: /var/tmp/portage/sci-physics/lammps-20200303/work/lammps-20200303_build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/gmake cmTC_87a4c/fast && /usr/bin/gmake  -f CMakeFiles/cmTC_87a4c.dir/build.make CMakeFiles/cmTC_87a4c.dir/build
gmake[1]: Entering directory '/var/tmp/portage/sci-physics/lammps-20200303/work/lammps-20200303_build/CMakeFiles/CMakeTmp'
Building CXX object CMakeFiles/cmTC_87a4c.dir/test_mpi.cpp.o
/usr/bin/x86_64-pc-linux-gnu-g++    -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color  -fPIE -o CMakeFiles/cmTC_87a4c.dir/test_mpi.cpp.o -c /var/tmp/portage/sci-physics/lammps-20200303/work/lammps-20200303_build/CMakeFiles/FindMPI/test_mpi.cpp
/var/tmp/portage/sci-physics/lammps-20200303/work/lammps-20200303_build/CMakeFiles/FindMPI/test_mpi.cpp:1:10: fatal error: mpi.h: No such file or directory
    1 | #include <mpi.h>
      |          ^~~~~~~
compilation terminated.
gmake[1]: *** [CMakeFiles/cmTC_87a4c.dir/build.make:85: CMakeFiles/cmTC_87a4c.dir/test_mpi.cpp.o] Error 1
gmake[1]: Leaving directory '/var/tmp/portage/sci-physics/lammps-20200303/work/lammps-20200303_build/CMakeFiles/CMakeTmp'
gmake: *** [Makefile:140: cmTC_87a4c/fast] Error 2



Performing C SOURCE FILE Test CMAKE_HAVE_LIBC_PTHREAD failed with the following output:
Change Dir: /var/tmp/portage/sci-physics/lammps-20200303/work/lammps-20200303_build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/gmake cmTC_bb3a9/fast && /usr/bin/gmake  -f CMakeFiles/cmTC_bb3a9.dir/build.make CMakeFiles/cmTC_bb3a9.dir/build
gmake[1]: Entering directory '/var/tmp/portage/sci-physics/lammps-20200303/work/lammps-20200303_build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_bb3a9.dir/src.c.o
/usr/bin/x86_64-pc-linux-gnu-gcc -DCMAKE_HAVE_LIBC_PTHREAD   -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color  -fPIE -o CMakeFiles/cmTC_bb3a9.dir/src.c.o -c /var/tmp/portage/sci-physics/lammps-20200303/work/lammps-20200303_build/CMakeFiles/CMakeTmp/src.c
Linking C executable cmTC_bb3a9
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_bb3a9.dir/link.txt --verbose=1
/usr/bin/x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color  -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  -rdynamic CMakeFiles/cmTC_bb3a9.dir/src.c.o -o cmTC_bb3a9 
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: CMakeFiles/cmTC_bb3a9.dir/src.c.o: in function `main':
src.c:(.text.startup+0x23): undefined reference to `pthread_create'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: src.c:(.text.startup+0x2c): undefined reference to `pthread_detach'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: src.c:(.text.startup+0x35): undefined reference to `pthread_cancel'
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: src.c:(.text.startup+0x40): undefined reference to `pthread_join'
collect2: error: ld returned 1 exit status
gmake[1]: *** [CMakeFiles/cmTC_bb3a9.dir/build.make:106: cmTC_bb3a9] Error 1
gmake[1]: Leaving directory '/var/tmp/portage/sci-physics/lammps-20200303/work/lammps-20200303_build/CMakeFiles/CMakeTmp'
gmake: *** [Makefile:140: cmTC_bb3a9/fast] Error 2


Source file was:
#include <pthread.h>

static void* test_func(void* data)
{
  return data;
}

int main(void)
{
  pthread_t thread;
  pthread_create(&thread, NULL, test_func, NULL);
  pthread_detach(thread);
  pthread_cancel(thread);
  pthread_join(thread, NULL);
  pthread_atfork(NULL, NULL, NULL);
  pthread_exit(NULL);

  return 0;
}

Determining if the function pthread_create exists in the pthreads failed with the following output:
Change Dir: /var/tmp/portage/sci-physics/lammps-20200303/work/lammps-20200303_build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/gmake cmTC_c9a6a/fast && /usr/bin/gmake  -f CMakeFiles/cmTC_c9a6a.dir/build.make CMakeFiles/cmTC_c9a6a.dir/build
gmake[1]: Entering directory '/var/tmp/portage/sci-physics/lammps-20200303/work/lammps-20200303_build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_c9a6a.dir/CheckFunctionExists.c.o
/usr/bin/x86_64-pc-linux-gnu-gcc    -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -DCHECK_FUNCTION_EXISTS=pthread_create -fPIE -o CMakeFiles/cmTC_c9a6a.dir/CheckFunctionExists.c.o -c /usr/share/cmake/Modules/CheckFunctionExists.c
Linking C executable cmTC_c9a6a
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_c9a6a.dir/link.txt --verbose=1
/usr/bin/x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -DCHECK_FUNCTION_EXISTS=pthread_create -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  -rdynamic CMakeFiles/cmTC_c9a6a.dir/CheckFunctionExists.c.o -o cmTC_c9a6a  -lpthreads 
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lpthreads
collect2: error: ld returned 1 exit status
gmake[1]: *** [CMakeFiles/cmTC_c9a6a.dir/build.make:106: cmTC_c9a6a] Error 1
gmake[1]: Leaving directory '/var/tmp/portage/sci-physics/lammps-20200303/work/lammps-20200303_build/CMakeFiles/CMakeTmp'
gmake: *** [Makefile:140: cmTC_c9a6a/fast] Error 2



Determining if the function cheev_ exists failed with the following output:
Change Dir: /var/tmp/portage/sci-physics/lammps-20200303/work/lammps-20200303_build/CMakeFiles/CMakeTmp

Run Build Command(s):/usr/bin/gmake cmTC_5cb65/fast && /usr/bin/gmake  -f CMakeFiles/cmTC_5cb65.dir/build.make CMakeFiles/cmTC_5cb65.dir/build
gmake[1]: Entering directory '/var/tmp/portage/sci-physics/lammps-20200303/work/lammps-20200303_build/CMakeFiles/CMakeTmp'
Building C object CMakeFiles/cmTC_5cb65.dir/CheckFunctionExists.c.o
/usr/bin/x86_64-pc-linux-gnu-gcc    -DNDEBUG -O2 -pipe -march=native -fno-diagnostics-color -DCHECK_FUNCTION_EXISTS=cheev_ -fPIE -o CMakeFiles/cmTC_5cb65.dir/CheckFunctionExists.c.o -c /usr/share/cmake/Modules/CheckFunctionExists.c
Linking C executable cmTC_5cb65
/usr/bin/cmake -E cmake_link_script CMakeFiles/cmTC_5cb65.dir/link.txt --verbose=1
/usr/bin/x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -fno-diagnostics-color -DCHECK_FUNCTION_EXISTS=cheev_ -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0  -rdynamic CMakeFiles/cmTC_5cb65.dir/CheckFunctionExists.c.o -o cmTC_5cb65  /usr/lib64/libblas.so -lpthread -lm -ldl 
/usr/lib/gcc/x86_64-pc-linux-gnu/10.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: CMakeFiles/cmTC_5cb65.dir/CheckFunctionExists.c.o: in function `main':
CheckFunctionExists.c:(.text.startup+0xc): undefined reference to `cheev_'
collect2: error: ld returned 1 exit status
gmake[1]: *** [CMakeFiles/cmTC_5cb65.dir/build.make:107: cmTC_5cb65] Error 1
gmake[1]: Leaving directory '/var/tmp/portage/sci-physics/lammps-20200303/work/lammps-20200303_build/CMakeFiles/CMakeTmp'
gmake: *** [Makefile:140: cmTC_5cb65/fast] Error 2