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Gentoo's Bugzilla – Attachment 673867 Details for
Bug 755818
[science overlay] sci-physics/atompaw-4.0.0.14 : configure: error: no working linear algebra libraries have been found
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sci-physics:atompaw-4.0.0.14:20201120-035015.log
sci-physics:atompaw-4.0.0.14:20201120-035015.log (text/plain), 9.28 KB, created by
Toralf Förster
on 2020-11-20 15:57:47 UTC
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Description:
sci-physics:atompaw-4.0.0.14:20201120-035015.log
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Creator:
Toralf Förster
Created:
2020-11-20 15:57:47 UTC
Size:
9.28 KB
patch
obsolete
> * Package: sci-physics/atompaw-4.0.0.14 > * Repository: science > * Maintainer: sci@gentoo.org sci-physics@gentoo.org,Hloupy.Honza@centrum.cz > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox > * Using following Fortran compiler: > * F77: x86_64-pc-linux-gnu-gfortran > * FC: x86_64-pc-linux-gnu-gfortran >>>> Unpacking source... >>>> Unpacking atompaw-4.0.0.14.tar.gz to /var/tmp/portage/sci-physics/atompaw-4.0.0.14/work >>>> Source unpacked in /var/tmp/portage/sci-physics/atompaw-4.0.0.14/work >>>> Preparing source in /var/tmp/portage/sci-physics/atompaw-4.0.0.14/work/atompaw-4.0.0.14 ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-physics/atompaw-4.0.0.14/work/atompaw-4.0.0.14 ... >>>> Working in BUILD_DIR: "/var/tmp/portage/sci-physics/atompaw-4.0.0.14/work/atompaw-4.0.0.14_build" > * econf: updating atompaw-4.0.0.14/config/gnu/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating atompaw-4.0.0.14/config/gnu/config.guess with /usr/share/gnuconfig/config.guess >/var/tmp/portage/sci-physics/atompaw-4.0.0.14/work/atompaw-4.0.0.14/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --libdir=/usr/lib64 --docdir=/usr/share/doc/atompaw-4.0.0.14 --disable-libxc --with-linalg-flavor=atlas --with-linalg-libs=-llapack --with-libxc-incs=-I/usr/include --with-libxc-libs=-lxc FC=x86_64-pc-linux-gnu-gfortran FCFLAGS=-O2 -pipe -march=native -fno-diagnostics-color CC=x86_64-pc-linux-gnu-gcc LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 >configure: regenerating the VERSION file >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking target system type... x86_64-pc-linux-gnu >checking for a BSD-compatible install... /usr/lib/portage/python3.7/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make sets $(MAKE)... (cached) yes >checking whether ln -s works... yes >checking for a sed that does not truncate output... /bin/sed >checking for gawk... (cached) gawk >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for dvipdf... dvipdf >checking for latex... no >checking for pdflatex... no >checking for perl... perl >checking for x86_64-pc-linux-gnu-gfortran... /usr/bin/x86_64-pc-linux-gnu-gfortran >checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran >checking whether the Fortran compiler works... yes >checking for Fortran compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU Fortran compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking which type of Fortran compiler we have... gnu 10.2 >checking fortran 90 modules extension... mod >checking for Fortran flag to compile .F90 files... none >configure: determining Fortran module case >checking whether Fortran modules are upper-case... no >checking whether the Fortran compiler accepts flush()... yes >checking whether the Fortran compiler accepts flush_()... no >checking how to print strings... printf >checking for style of include used by make... GNU >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking for a sed that does not truncate output... (cached) /bin/sed >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B >checking the name lister (/usr/bin/nm -B) interface... BSD nm >checking the maximum length of command line arguments... 1572864 >checking whether the shell understands some XSI constructs... yes >checking whether the shell understands "+="... yes >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... no >checking whether to build static libraries... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... no >checking whether to build static libraries... yes >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether linear algebra libraries work... no >configure: error: no working linear algebra libraries have been found > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/sci-physics/atompaw-4.0.0.14/work/atompaw-4.0.0.14_build/config.log > * ERROR: sci-physics/atompaw-4.0.0.14::science failed (configure phase): > * econf failed > * > * Call stack: > * ebuild.sh, line 125: Called src_configure > * environment, line 2590: Called autotools-utils_src_configure > * environment, line 657: Called econf '--docdir=/usr/share/doc/atompaw-4.0.0.14' '--disable-libxc' '--with-linalg-flavor=atlas' '--with-linalg-libs=-llapack ' '--with-libxc-incs=-I/usr/include ' '--with-libxc-libs=-lxc ' 'FC=x86_64-pc-linux-gnu-gfortran' 'FCFLAGS=-O2 -pipe -march=native -fno-diagnostics-color' 'CC=x86_64-pc-linux-gnu-gcc' 'LDFLAGS=-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0' > * phase-helpers.sh, line 680: Called __helpers_die 'econf failed' > * isolated-functions.sh, line 112: Called die > * The specific snippet of code: > * die "$@" > * > * If you need support, post the output of `emerge --info '=sci-physics/atompaw-4.0.0.14::science'`, > * the complete build log and the output of `emerge -pqv '=sci-physics/atompaw-4.0.0.14::science'`. > * The complete build log is located at '/var/log/portage/sci-physics:atompaw-4.0.0.14:20201120-035015.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-physics/atompaw-4.0.0.14/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-physics/atompaw-4.0.0.14/temp/environment'. > * Working directory: '/var/tmp/portage/sci-physics/atompaw-4.0.0.14/work/atompaw-4.0.0.14_build' > * S: '/var/tmp/portage/sci-physics/atompaw-4.0.0.14/work/atompaw-4.0.0.14'
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