Attachment 663631 Details for Bug 746275 – build.log

build.log

build.log (text/plain), 28.59 KB, created by Agostino Sarubbo on 2020-10-03 17:13:09 UTC

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Creator: Agostino Sarubbo

Created: 2020-10-03 17:13:09 UTC

Size: 28.59 KB

patch

obsolete

> * Package:    dev-haskell/biosff-0.3.7.1
> * Repository: gentoo
> * Maintainer: haskell@gentoo.org
> * USE:        abi_x86_64 amd64 elibc_glibc fclip flower frecover kernel_linux userland_GNU
> * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>
>
>@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@
>This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix;
>This ebuild was merged at the following commit:
>https://github.com/gentoo/gentoo/commit/745b9292fc01d43aeb0faa0e28b1843bc76082fe  (Sat Oct  3 10:04:26 UTC 2020)
>@@@@@ END @@@@@
>
>
>
>emerge --info:
>Portage 3.0.8 (python 3.7.9-final-0, default/linux/amd64/17.1, gcc-10.2.0, glibc-2.32-r2, 5.4.0-1025-aws x86_64)
>=================================================================
>System uname: Linux-5.4.0-1025-aws-x86_64-Intel-R-_Xeon-R-_Platinum_8124M_CPU_@_3.00GHz-with-gentoo-2.7
>KiB Mem:    71926568 total,  49948856 free
>KiB Swap:          0 total,         0 free
>sh bash 5.0_p18
>ld GNU ld (Gentoo 2.35.1 p1) 2.35.1
>app-shells/bash:          5.0_p18::gentoo
>dev-lang/perl:            5.30.3-r1::gentoo
>dev-lang/python:          2.7.18-r4::gentoo, 3.6.12::gentoo, 3.7.9::gentoo, 3.8.6::gentoo, 3.9.0_rc2::gentoo
>dev-util/cmake:           3.18.3::gentoo
>sys-apps/baselayout:      2.7::gentoo
>sys-apps/openrc:          0.42.1::gentoo
>sys-apps/sandbox:         2.20::gentoo
>sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r5::gentoo
>sys-devel/automake:       1.16.2::gentoo
>sys-devel/binutils:       2.35.1::gentoo
>sys-devel/gcc:            10.2.0-r2::gentoo
>sys-devel/gcc-config:     2.3.2::gentoo
>sys-devel/libtool:        2.4.6-r6::gentoo
>sys-devel/make:           4.3::gentoo
>sys-kernel/linux-headers: 5.8::gentoo (virtual/os-headers)
>sys-libs/glibc:           2.32-r2::gentoo
>Repositories:
>
>gentoo
>    location: /usr/portage
>    sync-type: rsync
>    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
>    priority: -1000
>    sync-rsync-extra-opts: 
>    sync-rsync-verify-max-age: 24
>    sync-rsync-verify-metamanifest: yes
>    sync-rsync-verify-jobs: 1
>
>ACCEPT_KEYWORDS="amd64 ~amd64"
>ACCEPT_LICENSE="* LGPL-2.1"
>CBUILD="x86_64-pc-linux-gnu"
>CFLAGS="-O2 -pipe -march=native -frecord-gcc-switches"
>CHOST="x86_64-pc-linux-gnu"
>CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
>CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
>CXXFLAGS="-O2 -pipe -march=native -frecord-gcc-switches"
>DISTDIR="/var/tmp/portage/dev-haskell/biosff-0.3.7.1/distdir"
>EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -k -b"
>ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
>FCFLAGS="-O2 -pipe -march=native -frecord-gcc-switches"
>FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
>FFLAGS="-O2 -pipe -march=native -frecord-gcc-switches"
>GENTOO_MIRRORS="http://distfiles.gentoo.org"
>LANG="C.UTF8"
>LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0"
>MAKEOPTS="-j36 V=1"
>PKGDIR="/root/.packages"
>PORTAGE_CONFIGROOT="/"
>PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
>PORTAGE_TMPDIR="/var/tmp"
>USE="acl amd64 berkdb bzip2 cli crypt dri elogind fclip flower fortran frecover gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl tcpd unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" USERLAND="GNU"
>Unset:  CC, CPPFLAGS, CTARGET, CXX, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
>
>
>
>>>> Unpacking source...
>>>> Unpacking biosff-0.3.7.1.tar.gz to /var/tmp/portage/dev-haskell/biosff-0.3.7.1/work
>>>> Source unpacked in /var/tmp/portage/dev-haskell/biosff-0.3.7.1/work
>>>> Preparing source in /var/tmp/portage/dev-haskell/biosff-0.3.7.1/work/biosff-0.3.7.1 ...
> * Applying biosff-0.3.7.1-ghc-7.10.patch ...
> [ ok ]
>>>> Source prepared.
>>>> Configuring source in /var/tmp/portage/dev-haskell/biosff-0.3.7.1/work/biosff-0.3.7.1 ...
> * Using cabal-3.0.1.0.
> * Prepending /usr/lib64/ghc-8.8.4 to LD_LIBRARY_PATH
>/usr/bin/ghc -package Cabal-3.0.1.0 --make /var/tmp/portage/dev-haskell/biosff-0.3.7.1/work/biosff-0.3.7.1/Setup.hs -j36 +RTS -A256M -qb0 -RTS -threaded -dynamic -o setup
>[1 of 1] Compiling Main             ( /var/tmp/portage/dev-haskell/biosff-0.3.7.1/work/biosff-0.3.7.1/Setup.hs, /var/tmp/portage/dev-haskell/biosff-0.3.7.1/work/biosff-0.3.7.1/Setup.o )
>Linking setup ...
>./setup configure --ghc --prefix=/usr --with-compiler=/usr/bin/ghc --with-hc-pkg=/usr/bin/ghc-pkg --prefix=/usr --libdir=/usr/lib64 --libsubdir=biosff-0.3.7.1/ghc-8.8.4 --datadir=/usr/share/ --datasubdir=biosff-0.3.7.1/ghc-8.8.4 --ghc-options=-j36 +RTS -A256M -qb0 -RTS --with-ar=x86_64-pc-linux-gnu-ar --ghc-option=-optc-O2 --ghc-option=-optc-pipe --ghc-option=-optc-march=native --ghc-option=-optc-frecord-gcc-switches --ghc-option=-optl-Wl,-O1 --ghc-option=-optl-Wl,--as-needed --ghc-option=-optl-Wl,--defsym=__gentoo_check_ldflags__=0 --disable-executable-stripping --docdir=/usr/share/doc/biosff-0.3.7.1 --verbose --enable-shared --enable-executable-dynamic --sysconfdir=/etc --disable-library-stripping --flags=fclip --flags=flower --flags=frecover
>Using Parsec parser
>Warning: biosff.cabal:5:8: Tabs used as indentation at 5:8, 6:8
>Configuring biosff-0.3.7.1...
>Flags chosen: fclip=True, flower=True, frecover=True
>Dependency array -any: using array-0.5.4.0
>Dependency base >=3 && <5: using base-4.13.0.0
>Dependency binary -any: using binary-0.8.7.0
>Dependency biocore >=0.3: using biocore-0.3.1
>Dependency bytestring -any: using bytestring-0.10.10.1
>Dependency array >=0.4: using array-0.5.4.0
>Dependency base >=3 && <5: using base-4.13.0.0
>Dependency cmdargs -any: using cmdargs-0.10.20
>Dependency mtl >=2: using mtl-2.2.2
>Dependency base >=3 && <5: using base-4.13.0.0
>Dependency base >=3 && <5: using base-4.13.0.0
>Source component graph:
>    component exe:frecover
>    component exe:flower
>    component exe:fclip
>    component lib
>Configured component graph:
>    component biosff-0.3.7.1-4rnNAqMwQkyA1VRNCi3VEJ-frecover
>        include array-0.5.4.0
>        include base-4.13.0.0
>        include binary-0.8.7.0
>        include biocore-0.3.1-Jew6ndvuKKS7JsY1AYuFS4
>        include bytestring-0.10.10.1
>        include cmdargs-0.10.20-K4EWmQzlhZZGYHXEDGL6hx
>        include mtl-2.2.2
>    component biosff-0.3.7.1-EXlMxBowVH534JFxDnfyCH-flower
>        include array-0.5.4.0
>        include base-4.13.0.0
>        include binary-0.8.7.0
>        include biocore-0.3.1-Jew6ndvuKKS7JsY1AYuFS4
>        include bytestring-0.10.10.1
>        include cmdargs-0.10.20-K4EWmQzlhZZGYHXEDGL6hx
>        include mtl-2.2.2
>    component biosff-0.3.7.1-7Nr9FLKpSWhHfQzBVjmKbu-fclip
>        include array-0.5.4.0
>        include base-4.13.0.0
>        include binary-0.8.7.0
>        include biocore-0.3.1-Jew6ndvuKKS7JsY1AYuFS4
>        include bytestring-0.10.10.1
>        include cmdargs-0.10.20-K4EWmQzlhZZGYHXEDGL6hx
>        include mtl-2.2.2
>    component biosff-0.3.7.1-Ig4MkHc5oTmEaKc8JTYlxH
>        include array-0.5.4.0
>        include base-4.13.0.0
>        include binary-0.8.7.0
>        include biocore-0.3.1-Jew6ndvuKKS7JsY1AYuFS4
>        include bytestring-0.10.10.1
>        include cmdargs-0.10.20-K4EWmQzlhZZGYHXEDGL6hx
>        include mtl-2.2.2
>Linked component graph:
>    unit biosff-0.3.7.1-4rnNAqMwQkyA1VRNCi3VEJ-frecover
>        include array-0.5.4.0
>        include base-4.13.0.0
>        include binary-0.8.7.0
>        include biocore-0.3.1-Jew6ndvuKKS7JsY1AYuFS4
>        include bytestring-0.10.10.1
>        include cmdargs-0.10.20-K4EWmQzlhZZGYHXEDGL6hx
>        include mtl-2.2.2
>    unit biosff-0.3.7.1-EXlMxBowVH534JFxDnfyCH-flower
>        include array-0.5.4.0
>        include base-4.13.0.0
>        include binary-0.8.7.0
>        include biocore-0.3.1-Jew6ndvuKKS7JsY1AYuFS4
>        include bytestring-0.10.10.1
>        include cmdargs-0.10.20-K4EWmQzlhZZGYHXEDGL6hx
>        include mtl-2.2.2
>    unit biosff-0.3.7.1-7Nr9FLKpSWhHfQzBVjmKbu-fclip
>        include array-0.5.4.0
>        include base-4.13.0.0
>        include binary-0.8.7.0
>        include biocore-0.3.1-Jew6ndvuKKS7JsY1AYuFS4
>        include bytestring-0.10.10.1
>        include cmdargs-0.10.20-K4EWmQzlhZZGYHXEDGL6hx
>        include mtl-2.2.2
>    unit biosff-0.3.7.1-Ig4MkHc5oTmEaKc8JTYlxH
>        include array-0.5.4.0
>        include base-4.13.0.0
>        include binary-0.8.7.0
>        include biocore-0.3.1-Jew6ndvuKKS7JsY1AYuFS4
>        include bytestring-0.10.10.1
>        include cmdargs-0.10.20-K4EWmQzlhZZGYHXEDGL6hx
>        include mtl-2.2.2
>        Bio.Sequence.SFF=biosff-0.3.7.1-Ig4MkHc5oTmEaKc8JTYlxH:Bio.Sequence.SFF,Bio.Sequence.SFF_filters=biosff-0.3.7.1-Ig4MkHc5oTmEaKc8JTYlxH:Bio.Sequence.SFF_filters
>Ready component graph:
>    definite biosff-0.3.7.1-Ig4MkHc5oTmEaKc8JTYlxH
>        depends array-0.5.4.0
>        depends base-4.13.0.0
>        depends binary-0.8.7.0
>        depends biocore-0.3.1-Jew6ndvuKKS7JsY1AYuFS4
>        depends bytestring-0.10.10.1
>        depends cmdargs-0.10.20-K4EWmQzlhZZGYHXEDGL6hx
>        depends mtl-2.2.2
>    definite biosff-0.3.7.1-EXlMxBowVH534JFxDnfyCH-flower
>        depends array-0.5.4.0
>        depends base-4.13.0.0
>        depends binary-0.8.7.0
>        depends biocore-0.3.1-Jew6ndvuKKS7JsY1AYuFS4
>        depends bytestring-0.10.10.1
>        depends cmdargs-0.10.20-K4EWmQzlhZZGYHXEDGL6hx
>        depends mtl-2.2.2
>    definite biosff-0.3.7.1-7Nr9FLKpSWhHfQzBVjmKbu-fclip
>        depends array-0.5.4.0
>        depends base-4.13.0.0
>        depends binary-0.8.7.0
>        depends biocore-0.3.1-Jew6ndvuKKS7JsY1AYuFS4
>        depends bytestring-0.10.10.1
>        depends cmdargs-0.10.20-K4EWmQzlhZZGYHXEDGL6hx
>        depends mtl-2.2.2
>    definite biosff-0.3.7.1-4rnNAqMwQkyA1VRNCi3VEJ-frecover
>        depends array-0.5.4.0
>        depends base-4.13.0.0
>        depends binary-0.8.7.0
>        depends biocore-0.3.1-Jew6ndvuKKS7JsY1AYuFS4
>        depends bytestring-0.10.10.1
>        depends cmdargs-0.10.20-K4EWmQzlhZZGYHXEDGL6hx
>        depends mtl-2.2.2
>Using Cabal-3.0.1.0 compiled by ghc-8.8
>Using compiler: ghc-8.8.4
>Using install prefix: /usr
>Executables installed in: /usr/bin
>Libraries installed in: /usr/lib64/biosff-0.3.7.1/ghc-8.8.4
>Dynamic Libraries installed in: /usr/lib64/x86_64-linux-ghc-8.8.4
>Private executables installed in:
>/usr/libexec/x86_64-linux-ghc-8.8.4/biosff-0.3.7.1
>Data files installed in: /usr/share/biosff-0.3.7.1/ghc-8.8.4
>Documentation installed in: /usr/share/doc/biosff-0.3.7.1
>Configuration files installed in: /etc
>No alex found
>Using ar given by user at: /usr/bin/x86_64-pc-linux-gnu-ar
>No c2hs found
>No cpphs found
>No doctest found
>Using gcc version 10.2.0 found on system at: /usr/bin/x86_64-pc-linux-gnu-gcc
>Using ghc version 8.8.4 given by user at: /usr/bin/ghc
>Using ghc-pkg version 8.8.4 given by user at: /usr/bin/ghc-pkg
>No ghcjs found
>No ghcjs-pkg found
>No greencard found
>Using haddock version 2.23.0 found on system at: /usr/bin/haddock-ghc-8.8.4
>No happy found
>Using haskell-suite found on system at: haskell-suite-dummy-location
>Using haskell-suite-pkg found on system at: haskell-suite-pkg-dummy-location
>No hmake found
>Using hpc version 0.67 found on system at: /usr/bin/hpc
>Using hsc2hs version 0.68.7 found on system at: /usr/bin/hsc2hs
>No hscolour found
>No jhc found
>Using ld found on system at: /usr/bin/x86_64-pc-linux-gnu-ld
>Using pkg-config version 1.7.3 found on system at: /usr/bin/pkg-config
>Using runghc version 8.8.4 found on system at: /usr/bin/runghc
>Using strip version 2.35 found on system at: /usr/bin/strip
>Using tar found on system at: /bin/tar
>No uhc found
>>>> Source configured.
>>>> Compiling source in /var/tmp/portage/dev-haskell/biosff-0.3.7.1/work/biosff-0.3.7.1 ...
>./setup build
>Preprocessing library for biosff-0.3.7.1..
>Building library for biosff-0.3.7.1..
>[1 of 3] Compiling Bio.Sequence.SFF_name ( src/Bio/Sequence/SFF_name.hs, dist/build/Bio/Sequence/SFF_name.o )
>[2 of 3] Compiling Bio.Sequence.SFF ( src/Bio/Sequence/SFF.hs, dist/build/Bio/Sequence/SFF.o )
>
>[;1msrc/Bio/Sequence/SFF.hs:68:32: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wdeprecations[0m[0m[;1m][0m[0m[;1m
>    In the use of ârunGetStateâ (imported from Data.Binary.Get):
>    Deprecated: "Use runGetIncremental instead. This function will be removed."[0m[0m
>[;1m[34m   |[0m[0m
>[;1m[34m68 |[0m[0m   let (header, remaining, _) = [;1m[35mrunGetState[0m[0m (get::Get CommonHeader) file 0
>[;1m[34m   |[0m[0m[;1m[35m                                ^^^^^^^^^^^[0m[0m
>[0m[0m[0m
>[;1msrc/Bio/Sequence/SFF.hs:75:22: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wdeprecations[0m[0m[;1m][0m[0m[;1m
>    In the use of ârunGetStateâ (imported from Data.Binary.Get):
>    Deprecated: "Use runGetIncremental instead. This function will be removed."[0m[0m
>[;1m[34m   |[0m[0m
>[;1m[34m75 |[0m[0m   | otherwise = case [;1m[35mrunGetState[0m[0m (getBlock $ fromIntegral $ flow_length $ header) str 0 of
>[;1m[34m   |[0m[0m[;1m[35m                      ^^^^^^^^^^^[0m[0m
>[0m[0m[0m[3 of 3] Compiling Bio.Sequence.SFF_filters ( src/Bio/Sequence/SFF_filters.hs, dist/build/Bio/Sequence/SFF_filters.o )
>Preprocessing executable 'flower' for biosff-0.3.7.1..
>Building executable 'flower' for biosff-0.3.7.1..
>
>[;1m<no location info>: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wmissing-home-modules[0m[0m[;1m][0m[0m[;1m
>    These modules are needed for compilation but not listed in your .cabal file's other-modules: 
>        Bio.Sequence.SFF Bio.Sequence.SFF_filters Bio.Sequence.SFF_name[0m[0m
>[0m[0m[0m[1 of 8] Compiling Bio.Sequence.SFF_name ( src/Bio/Sequence/SFF_name.hs, dist/build/flower/flower-tmp/Bio/Sequence/SFF_name.dyn_o )
>[2 of 8] Compiling Bio.Sequence.SFF ( src/Bio/Sequence/SFF.hs, dist/build/flower/flower-tmp/Bio/Sequence/SFF.dyn_o )
>
>[;1msrc/Bio/Sequence/SFF.hs:68:32: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wdeprecations[0m[0m[;1m][0m[0m[;1m
>    In the use of ârunGetStateâ (imported from Data.Binary.Get):
>    Deprecated: "Use runGetIncremental instead. This function will be removed."[0m[0m
>[;1m[34m   |[0m[0m
>[;1m[34m68 |[0m[0m   let (header, remaining, _) = [;1m[35mrunGetState[0m[0m (get::Get CommonHeader) file 0
>[;1m[34m   |[0m[0m[;1m[35m                                ^^^^^^^^^^^[0m[0m
>[0m[0m[0m
>[;1msrc/Bio/Sequence/SFF.hs:75:22: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wdeprecations[0m[0m[;1m][0m[0m[;1m
>    In the use of ârunGetStateâ (imported from Data.Binary.Get):
>    Deprecated: "Use runGetIncremental instead. This function will be removed."[0m[0m
>[;1m[34m   |[0m[0m
>[;1m[34m75 |[0m[0m   | otherwise = case [;1m[35mrunGetState[0m[0m (getBlock $ fromIntegral $ flow_length $ header) str 0 of
>[;1m[34m   |[0m[0m[;1m[35m                      ^^^^^^^^^^^[0m[0m
>[0m[0m[0m[3 of 8] Compiling Bio.Sequence.SFF_filters ( src/Bio/Sequence/SFF_filters.hs, dist/build/flower/flower-tmp/Bio/Sequence/SFF_filters.dyn_o )
>[4 of 8] Compiling Fork             ( src/Flower/Fork.hs, dist/build/flower/flower-tmp/Fork.dyn_o )
>[5 of 8] Compiling Metrics          ( src/Flower/Metrics.hs, dist/build/flower/flower-tmp/Metrics.dyn_o )
>[6 of 8] Compiling Options          ( src/Flower/Options.hs, dist/build/flower/flower-tmp/Options.dyn_o )
>[7 of 8] Compiling Print            ( src/Flower/Print.hs, dist/build/flower/flower-tmp/Print.dyn_o )
>
>[;1msrc/Flower/Print.hs:8:1: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wunused-imports[0m[0m[;1m][0m[0m[;1m
>    The import of âData.Monoidâ is redundant
>      except perhaps to import instances from âData.Monoidâ
>    To import instances alone, use: import Data.Monoid()[0m[0m
>[;1m[34m  |[0m[0m
>[;1m[34m8 |[0m[0m [;1m[35mimport Data.Monoid[0m[0m
>[;1m[34m  |[0m[0m[;1m[35m ^^^^^^^^^^^^^^^^^^[0m[0m
>[0m[0m[0m[8 of 8] Compiling Main             ( src/Flower/Main.hs, dist/build/flower/flower-tmp/Main.dyn_o )
>
>[;1msrc/Flower/Main.hs:25:1: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wdodgy-imports[0m[0m[;1m][0m[0m[;1m
>    Module âData.Array.STâ does not export âunsafeFreezeâ[0m[0m
>[;1m[34m   |[0m[0m
>[;1m[34m25 |[0m[0m [;1m[35mimport Data.Array.ST hiding (unsafeFreeze)[0m[0m
>[;1m[34m   |[0m[0m[;1m[35m ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^[0m[0m
>[0m[0m[0m
>[;1msrc/Flower/Main.hs:77:1: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wunused-top-binds[0m[0m[;1m][0m[0m[;1m
>    Defined but not used: âisEmptyâ[0m[0m
>[;1m[34m   |[0m[0m
>[;1m[34m77 |[0m[0m [;1m[35misEmpty[0m[0m r = True
>[;1m[34m   |[0m[0m[;1m[35m ^^^^^^^[0m[0m
>[0m[0m[0m
>[;1msrc/Flower/Main.hs:77:1: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wmissing-signatures[0m[0m[;1m][0m[0m[;1m
>    Top-level binding with no type signature: isEmpty :: p -> Bool[0m[0m
>[;1m[34m   |[0m[0m
>[;1m[34m77 |[0m[0m [;1m[35misEmpty[0m[0m r = True
>[;1m[34m   |[0m[0m[;1m[35m ^^^^^^^[0m[0m
>[0m[0m[0m
>[;1msrc/Flower/Main.hs:77:9: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wunused-matches[0m[0m[;1m][0m[0m[;1m
>    Defined but not used: ârâ[0m[0m
>[;1m[34m   |[0m[0m
>[;1m[34m77 |[0m[0m isEmpty [;1m[35mr[0m[0m = True
>[;1m[34m   |[0m[0m[;1m[35m         ^[0m[0m
>[0m[0m[0m
>[;1m<no location info>: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wmissing-home-modules[0m[0m[;1m][0m[0m[;1m
>    These modules are needed for compilation but not listed in your .cabal file's other-modules: 
>        Bio.Sequence.SFF Bio.Sequence.SFF_filters Bio.Sequence.SFF_name[0m[0m
>[0m[0m[0mLinking dist/build/flower/flower ...
>Preprocessing executable 'fclip' for biosff-0.3.7.1..
>Building executable 'fclip' for biosff-0.3.7.1..
>
>[;1m<no location info>: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wmissing-home-modules[0m[0m[;1m][0m[0m[;1m
>    These modules are needed for compilation but not listed in your .cabal file's other-modules: 
>        Bio.Sequence.SFF Bio.Sequence.SFF_name[0m[0m
>[0m[0m[0m[1 of 4] Compiling Bio.Sequence.SFF_name ( src/Bio/Sequence/SFF_name.hs, dist/build/fclip/fclip-tmp/Bio/Sequence/SFF_name.dyn_o )
>[2 of 4] Compiling Bio.Sequence.SFF ( src/Bio/Sequence/SFF.hs, dist/build/fclip/fclip-tmp/Bio/Sequence/SFF.dyn_o )
>
>[;1msrc/Bio/Sequence/SFF.hs:68:32: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wdeprecations[0m[0m[;1m][0m[0m[;1m
>    In the use of ârunGetStateâ (imported from Data.Binary.Get):
>    Deprecated: "Use runGetIncremental instead. This function will be removed."[0m[0m
>[;1m[34m   |[0m[0m
>[;1m[34m68 |[0m[0m   let (header, remaining, _) = [;1m[35mrunGetState[0m[0m (get::Get CommonHeader) file 0
>[;1m[34m   |[0m[0m[;1m[35m                                ^^^^^^^^^^^[0m[0m
>[0m[0m[0m
>[;1msrc/Bio/Sequence/SFF.hs:75:22: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wdeprecations[0m[0m[;1m][0m[0m[;1m
>    In the use of ârunGetStateâ (imported from Data.Binary.Get):
>    Deprecated: "Use runGetIncremental instead. This function will be removed."[0m[0m
>[;1m[34m   |[0m[0m
>[;1m[34m75 |[0m[0m   | otherwise = case [;1m[35mrunGetState[0m[0m (getBlock $ fromIntegral $ flow_length $ header) str 0 of
>[;1m[34m   |[0m[0m[;1m[35m                      ^^^^^^^^^^^[0m[0m
>[0m[0m[0m[3 of 4] Compiling Options          ( src/FClip/Options.hs, dist/build/fclip/fclip-tmp/Options.dyn_o )
>[4 of 4] Compiling Main             ( src/FClip/Main.hs, dist/build/fclip/fclip-tmp/Main.dyn_o )
>
>[;1m<no location info>: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wmissing-home-modules[0m[0m[;1m][0m[0m[;1m
>    These modules are needed for compilation but not listed in your .cabal file's other-modules: 
>        Bio.Sequence.SFF Bio.Sequence.SFF_name[0m[0m
>[0m[0m[0mLinking dist/build/fclip/fclip ...
>Preprocessing executable 'frecover' for biosff-0.3.7.1..
>Building executable 'frecover' for biosff-0.3.7.1..
>
>[;1m<no location info>: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wmissing-home-modules[0m[0m[;1m][0m[0m[;1m
>    These modules are needed for compilation but not listed in your .cabal file's other-modules: 
>        Bio.Sequence.SFF Bio.Sequence.SFF_name[0m[0m
>[0m[0m[0m[1 of 3] Compiling Bio.Sequence.SFF_name ( src/Bio/Sequence/SFF_name.hs, dist/build/frecover/frecover-tmp/Bio/Sequence/SFF_name.dyn_o )
>[2 of 3] Compiling Bio.Sequence.SFF ( src/Bio/Sequence/SFF.hs, dist/build/frecover/frecover-tmp/Bio/Sequence/SFF.dyn_o )
>
>[;1msrc/Bio/Sequence/SFF.hs:68:32: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wdeprecations[0m[0m[;1m][0m[0m[;1m
>    In the use of ârunGetStateâ (imported from Data.Binary.Get):
>    Deprecated: "Use runGetIncremental instead. This function will be removed."[0m[0m
>[;1m[34m   |[0m[0m
>[;1m[34m68 |[0m[0m   let (header, remaining, _) = [;1m[35mrunGetState[0m[0m (get::Get CommonHeader) file 0
>[;1m[34m   |[0m[0m[;1m[35m                                ^^^^^^^^^^^[0m[0m
>[0m[0m[0m
>[;1msrc/Bio/Sequence/SFF.hs:75:22: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wdeprecations[0m[0m[;1m][0m[0m[;1m
>    In the use of ârunGetStateâ (imported from Data.Binary.Get):
>    Deprecated: "Use runGetIncremental instead. This function will be removed."[0m[0m
>[;1m[34m   |[0m[0m
>[;1m[34m75 |[0m[0m   | otherwise = case [;1m[35mrunGetState[0m[0m (getBlock $ fromIntegral $ flow_length $ header) str 0 of
>[;1m[34m   |[0m[0m[;1m[35m                      ^^^^^^^^^^^[0m[0m
>[0m[0m[0m[3 of 3] Compiling Main             ( src/FRecover/Main.hs, dist/build/frecover/frecover-tmp/Main.dyn_o )
>
>[;1m<no location info>: [;1m[35mwarning:[0m[0m[;1m [[;1m[35m-Wmissing-home-modules[0m[0m[;1m][0m[0m[;1m
>    These modules are needed for compilation but not listed in your .cabal file's other-modules: 
>        Bio.Sequence.SFF Bio.Sequence.SFF_name[0m[0m
>[0m[0m[0mLinking dist/build/frecover/frecover ...
>>>> Source compiled.
>>>> Test phase [not enabled]: dev-haskell/biosff-0.3.7.1
>
>>>> Install dev-haskell/biosff-0.3.7.1 into /var/tmp/portage/dev-haskell/biosff-0.3.7.1/image
>./setup copy --destdir=/var/tmp/portage/dev-haskell/biosff-0.3.7.1/image
>Installing library in /var/tmp/portage/dev-haskell/biosff-0.3.7.1/image/usr/lib64/biosff-0.3.7.1/ghc-8.8.4
>Installing executable flower in /var/tmp/portage/dev-haskell/biosff-0.3.7.1/image/usr/bin
>Warning: The directory
>/var/tmp/portage/dev-haskell/biosff-0.3.7.1/image/usr/bin is not in the system
>search path.
>Installing executable fclip in /var/tmp/portage/dev-haskell/biosff-0.3.7.1/image/usr/bin
>Warning: The directory
>/var/tmp/portage/dev-haskell/biosff-0.3.7.1/image/usr/bin is not in the system
>search path.
>Installing executable frecover in /var/tmp/portage/dev-haskell/biosff-0.3.7.1/image/usr/bin
>Warning: The directory
>/var/tmp/portage/dev-haskell/biosff-0.3.7.1/image/usr/bin is not in the system
>search path.
>Reading package info from stdin ... done.
>biosff-0.3.7.1: Warning: library-dirs: /usr/lib64/biosff-0.3.7.1/ghc-8.8.4 doesn't exist or isn't a directory
>biosff-0.3.7.1: Warning: haddock-interfaces: /usr/share/doc/biosff-0.3.7.1/html/biosff.haddock doesn't exist or isn't a file
>biosff-0.3.7.1: Warning: haddock-html: /usr/share/doc/biosff-0.3.7.1/html doesn't exist or isn't a directory
>biosff-0.3.7.1: dependency "array-0.5.4.0" doesn't exist (ignoring)
>biosff-0.3.7.1: dependency "base-4.13.0.0" doesn't exist (ignoring)
>biosff-0.3.7.1: dependency "binary-0.8.7.0" doesn't exist (ignoring)
>biosff-0.3.7.1: dependency "biocore-0.3.1-Jew6ndvuKKS7JsY1AYuFS4" doesn't exist (ignoring)
>biosff-0.3.7.1: dependency "bytestring-0.10.10.1" doesn't exist (ignoring)
>biosff-0.3.7.1: dependency "cmdargs-0.10.20-K4EWmQzlhZZGYHXEDGL6hx" doesn't exist (ignoring)
>biosff-0.3.7.1: dependency "mtl-2.2.2" doesn't exist (ignoring)
>biosff-0.3.7.1: import-dirs: /usr/lib64/biosff-0.3.7.1/ghc-8.8.4 doesn't exist or isn't a directory (ignoring)
>biosff-0.3.7.1: cannot find any of ["Bio/Sequence/SFF.hi","Bio/Sequence/SFF.p_hi","Bio/Sequence/SFF.dyn_hi"] (ignoring)
>biosff-0.3.7.1: cannot find any of ["Bio/Sequence/SFF_filters.hi","Bio/Sequence/SFF_filters.p_hi","Bio/Sequence/SFF_filters.dyn_hi"] (ignoring)
>biosff-0.3.7.1: cannot find any of ["Bio/Sequence/SFF_name.hi","Bio/Sequence/SFF_name.p_hi","Bio/Sequence/SFF_name.dyn_hi"] (ignoring)
>biosff-0.3.7.1: cannot find any of ["libHSbiosff-0.3.7.1-Ig4MkHc5oTmEaKc8JTYlxH.a","libHSbiosff-0.3.7.1-Ig4MkHc5oTmEaKc8JTYlxH_p.a","libHSbiosff-0.3.7.1-Ig4MkHc5oTmEaKc8JTYlxH-ghc8.8.4.so","libHSbiosff-0.3.7.1-Ig4MkHc5oTmEaKc8JTYlxH-ghc8.8.4.dylib","HSbiosff-0.3.7.1-Ig4MkHc5oTmEaKc8JTYlxH-ghc8.8.4.dll"] on library path (ignoring)
>>>> Completed installing dev-haskell/biosff-0.3.7.1 into /var/tmp/portage/dev-haskell/biosff-0.3.7.1/image
>
> * Final size of build directory: 5836 KiB (5.6 MiB)
> * Final size of installed tree:  2460 KiB (2.4 MiB)
>
>Auto fixing rpaths for /var/tmp/portage/dev-haskell/biosff-0.3.7.1/image/usr/bin/fclip
>Auto fixing rpaths for /var/tmp/portage/dev-haskell/biosff-0.3.7.1/image/usr/bin/flower
>Auto fixing rpaths for /var/tmp/portage/dev-haskell/biosff-0.3.7.1/image/usr/bin/frecover
>
> * QA Notice: The following files contain insecure RUNPATHs
> *  Please file a bug about this at https://bugs.gentoo.org/
> *  with the maintainer of the package.
> *   /var/tmp/portage/dev-haskell/biosff-0.3.7.1/image/usr/bin/fclip
> *     RPATH: /usr/lib64/ghc-8.8.4/array-0.5.4.0:/usr/lib64/ghc-8.8.4/base-4.13.0.0:/usr/lib64/ghc-8.8.4/binary-0.8.7.0:/var/tmp/portage/dev-haskell/biosff-0.3.7.1/work/biosff-0.3.7.1/dist/build:/usr/lib64/ghc-8.8.4/bytestring-0.10.10.1:/usr/lib64/ghc-8.8.4/containers-0.6.2.1:/usr/lib64/ghc-8.8.4/deepseq-1.4.4.0:/usr/lib64/ghc-8.8.4/directory-1.3.6.0:/usr/lib64/ghc-8.8.4/filepath-1.4.2.1:/usr/lib64/ghc-8.8.4/ghc-boot-th-8.8.4:/usr/lib64/ghc-8.8.4/ghc-prim-0.5.3:/usr/lib64/ghc-8.8.4/integer-gmp-1.0.2.0:/usr/lib64/ghc-8.8.4/mtl-2.2.2:/usr/lib64/ghc-8.8.4/pretty-1.1.3.6:/usr/lib64/ghc-8.8.4/process-1.6.9.0:/usr/lib64/ghc-8.8.4/rts:/usr/lib64/x86_64-linux-ghc-8.8.4:/usr/lib64/ghc-8.8.4/template-haskell-2.15.0.0:/usr/lib64/ghc-8.8.4/text-1.2.4.0:/usr/lib64/ghc-8.8.4/time-1.9.3:/usr/lib64/ghc-8.8.4/transformers-0.5.6.2:/usr/lib64/ghc-8.8.4/unix-2.7.2.2
> *   /var/tmp/portage/dev-haskell/biosff-0.3.7.1/image/usr/bin/flower
> *     RPATH: /usr/lib64/ghc-8.8.4/array-0.5.4.0:/usr/lib64/ghc-8.8.4/base-4.13.0.0:/usr/lib64/ghc-8.8.4/binary-0.8.7.0:/var/tmp/portage/dev-haskell/biosff-0.3.7.1/work/biosff-0.3.7.1/dist/build:/usr/lib64/ghc-8.8.4/bytestring-0.10.10.1:/usr/lib64/ghc-8.8.4/containers-0.6.2.1:/usr/lib64/ghc-8.8.4/deepseq-1.4.4.0:/usr/lib64/ghc-8.8.4/directory-1.3.6.0:/usr/lib64/ghc-8.8.4/filepath-1.4.2.1:/usr/lib64/ghc-8.8.4/ghc-boot-th-8.8.4:/usr/lib64/ghc-8.8.4/ghc-prim-0.5.3:/usr/lib64/ghc-8.8.4/integer-gmp-1.0.2.0:/usr/lib64/ghc-8.8.4/mtl-2.2.2:/usr/lib64/ghc-8.8.4/pretty-1.1.3.6:/usr/lib64/ghc-8.8.4/process-1.6.9.0:/usr/lib64/ghc-8.8.4/rts:/usr/lib64/x86_64-linux-ghc-8.8.4:/usr/lib64/ghc-8.8.4/template-haskell-2.15.0.0:/usr/lib64/ghc-8.8.4/text-1.2.4.0:/usr/lib64/ghc-8.8.4/time-1.9.3:/usr/lib64/ghc-8.8.4/transformers-0.5.6.2:/usr/lib64/ghc-8.8.4/unix-2.7.2.2
> *   /var/tmp/portage/dev-haskell/biosff-0.3.7.1/image/usr/bin/frecover
> *     RPATH: /usr/lib64/ghc-8.8.4/array-0.5.4.0:/usr/lib64/ghc-8.8.4/base-4.13.0.0:/usr/lib64/ghc-8.8.4/binary-0.8.7.0:/var/tmp/portage/dev-haskell/biosff-0.3.7.1/work/biosff-0.3.7.1/dist/build:/usr/lib64/ghc-8.8.4/bytestring-0.10.10.1:/usr/lib64/ghc-8.8.4/containers-0.6.2.1:/usr/lib64/ghc-8.8.4/deepseq-1.4.4.0:/usr/lib64/ghc-8.8.4/directory-1.3.6.0:/usr/lib64/ghc-8.8.4/filepath-1.4.2.1:/usr/lib64/ghc-8.8.4/ghc-boot-th-8.8.4:/usr/lib64/ghc-8.8.4/ghc-prim-0.5.3:/usr/lib64/ghc-8.8.4/integer-gmp-1.0.2.0:/usr/lib64/ghc-8.8.4/mtl-2.2.2:/usr/lib64/ghc-8.8.4/pretty-1.1.3.6:/usr/lib64/ghc-8.8.4/process-1.6.9.0:/usr/lib64/ghc-8.8.4/rts:/usr/lib64/x86_64-linux-ghc-8.8.4:/usr/lib64/ghc-8.8.4/template-haskell-2.15.0.0:/usr/lib64/ghc-8.8.4/text-1.2.4.0:/usr/lib64/ghc-8.8.4/time-1.9.3:/usr/lib64/ghc-8.8.4/transformers-0.5.6.2:/usr/lib64/ghc-8.8.4/unix-2.7.2.2
> * 
>
>strip: x86_64-pc-linux-gnu-strip --strip-unneeded -N __gentoo_check_ldflags__ -R .comment -R .GCC.command.line -R .note.gnu.gold-version
>   /usr/lib64/biosff-0.3.7.1/ghc-8.8.4/libHSbiosff-0.3.7.1-Ig4MkHc5oTmEaKc8JTYlxH.a
>   /usr/lib64/x86_64-linux-ghc-8.8.4/libHSbiosff-0.3.7.1-Ig4MkHc5oTmEaKc8JTYlxH-ghc8.8.4.so
>   /usr/bin/fclip
>   /usr/bin/flower
>   /usr/bin/frecover
>>>> Done.
> * Recaching GHC package DB

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Attachments on bug 746275: 663631