Attachment 659376 Details for Bug 741506 – build.log

build.log

build.log (text/plain), 15.54 KB, created by Agostino Sarubbo on 2020-09-10 11:58:16 UTC

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Creator: Agostino Sarubbo

Created: 2020-09-10 11:58:16 UTC

Size: 15.54 KB

patch

obsolete

> * Package:    sci-libs/levmar-2.6
> * Repository: gentoo
> * Maintainer: amynka@gentoo.org 3dprint@gentoo.org
> * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux test userland_GNU
> * FEATURES:   network-sandbox preserve-libs sandbox test userpriv usersandbox
>
>
>@@@@@ PLEASE PAY ATTENTION HERE!!! @@@@@
>This information may help you to understand if this is a duplicate or if this bug exists after you pushed a fix;
>This ebuild was merged at the following commit:
>https://github.com/gentoo-mirror/gentoo/commit/2f765f2f8d910e721cc38ddca868a7504c8007a7  (Thu Sep 10 09:11:00 UTC 2020)
>@@@@@ END @@@@@
>
>
>
>emerge --info:
>Portage 3.0.6 (python 3.8.5-final-0, default/linux/amd64/17.1, gcc-10.2.0, glibc-2.32-r1, 5.4.0-1021-aws x86_64)
>=================================================================
>System uname: Linux-5.4.0-1021-aws-x86_64-Intel-R-_Xeon-R-_Platinum_8175M_CPU_@_2.50GHz-with-glibc2.2.5
>KiB Mem:    64359960 total,  32724244 free
>KiB Swap:          0 total,         0 free
>Timestamp of repository gentoo: Thu, 10 Sep 2020 09:10:58 +0000
>sh bash 5.0_p18
>ld GNU ld (Gentoo 2.34 p6) 2.34.0
>app-shells/bash:          5.0_p18::gentoo
>dev-lang/perl:            5.30.3-r1::gentoo
>dev-lang/python:          2.7.18-r1::gentoo, 3.6.12::gentoo, 3.7.9::gentoo, 3.8.5::gentoo, 3.9.0_rc1::gentoo
>dev-util/cmake:           3.18.2::gentoo
>sys-apps/baselayout:      2.7::gentoo
>sys-apps/openrc:          0.42.1::gentoo
>sys-apps/sandbox:         2.20::gentoo
>sys-devel/autoconf:       2.13-r1::gentoo, 2.69-r5::gentoo
>sys-devel/automake:       1.16.2::gentoo
>sys-devel/binutils:       2.34-r2::gentoo
>sys-devel/gcc:            10.2.0-r1::gentoo
>sys-devel/gcc-config:     2.3.2::gentoo
>sys-devel/libtool:        2.4.6-r6::gentoo
>sys-devel/make:           4.3::gentoo
>sys-kernel/linux-headers: 5.8::gentoo (virtual/os-headers)
>sys-libs/glibc:           2.32-r1::gentoo
>Repositories:
>
>gentoo
>    location: /usr/portage
>    sync-type: rsync
>    sync-uri: rsync://rsync.gentoo.org/gentoo-portage
>    priority: -1000
>    sync-rsync-verify-jobs: 1
>    sync-rsync-verify-max-age: 24
>    sync-rsync-verify-metamanifest: yes
>    sync-rsync-extra-opts: 
>
>ACCEPT_KEYWORDS="amd64 ~amd64"
>ACCEPT_LICENSE="* GPL-2"
>CBUILD="x86_64-pc-linux-gnu"
>CC="x86_64-pc-linux-gnu-clang"
>CFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color"
>CHOST="x86_64-pc-linux-gnu"
>CONFIG_PROTECT="/etc /usr/share/gnupg/qualified.txt"
>CONFIG_PROTECT_MASK="/etc/ca-certificates.conf /etc/env.d /etc/gconf /etc/gentoo-release /etc/revdep-rebuild /etc/sandbox.d /etc/terminfo"
>CXX="x86_64-pc-linux-gnu-clang++"
>CXXFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color"
>DISTDIR="/var/tmp/portage/sci-libs/levmar-2.6/distdir"
>EMERGE_DEFAULT_OPTS="--with-bdeps=y -1 -b -k"
>ENV_UNSET="CARGO_HOME DBUS_SESSION_BUS_ADDRESS DISPLAY GOBIN GOPATH PERL5LIB PERL5OPT PERLPREFIX PERL_CORE PERL_MB_OPT PERL_MM_OPT XAUTHORITY XDG_CACHE_HOME XDG_CONFIG_HOME XDG_DATA_HOME XDG_RUNTIME_DIR"
>FCFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color"
>FEATURES="assume-digests binpkg-docompress binpkg-dostrip binpkg-logs buildpkg collision-protect config-protect-if-modified distlocks ebuild-locks fixlafiles ipc-sandbox merge-sync multilib-strict network-sandbox news parallel-fetch pid-sandbox preserve-libs protect-owned qa-unresolved-soname-deps sandbox sfperms sign split-log strict test unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv usersandbox usersync xattr"
>FFLAGS="-O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color"
>GENTOO_MIRRORS="http://distfiles.gentoo.org"
>LANG="C.UTF-8"
>LDFLAGS="-Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld"
>MAKEOPTS="-j16 V=1"
>PKGDIR="/root/.packages"
>PORTAGE_CONFIGROOT="/"
>PORTAGE_RSYNC_OPTS="--recursive --links --safe-links --perms --times --omit-dir-times --compress --force --whole-file --delete --stats --human-readable --timeout=180 --exclude=/distfiles --exclude=/local --exclude=/packages --exclude=/.git"
>PORTAGE_TMPDIR="/var/tmp"
>USE="acl amd64 berkdb bzip2 cli crypt dri elogind fortran gdbm iconv ipv6 jumbo-build libglvnd libtirpc multilib native-symlinks ncurses nls nptl openmp pam pcre readline seccomp split-usr ssl tcpd test unicode xattr zlib" ABI_X86="64" ELIBC="glibc" KERNEL="linux" USERLAND="GNU"
>Unset:  CPPFLAGS, CTARGET, INSTALL_MASK, LC_ALL, LINGUAS, PORTAGE_BINHOST, PORTAGE_BUNZIP2_COMMAND, PORTAGE_COMPRESS, PORTAGE_COMPRESS_FLAGS, PORTAGE_RSYNC_EXTRA_OPTS
>
>
>
>>>> Unpacking source...
>>>> Unpacking levmar-2.6.tgz to /var/tmp/portage/sci-libs/levmar-2.6/work
>>>> Source unpacked in /var/tmp/portage/sci-libs/levmar-2.6/work
>>>> Preparing source in /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6 ...
> * Applying levmar-2.6-shared.patch ...
> [ ok ]
> * Applying levmar-2.6-demo-underlinking.patch ...
> [ ok ]
>>>> Source prepared.
>>>> Configuring source in /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6 ...
>>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build"
>cmake --no-warn-unused-cli -C /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/gentoo_common_config.cmake -G Unix Makefiles -DCMAKE_INSTALL_PREFIX=/usr -DNEED_F2C=OFF -DHAVE_LAPACK=ON -DLAPACKBLAS_LIB_NAMES=-lblas -llapack  -DBUILD_DEMO=ON -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_INSTALL_DO_STRIP=OFF -DCMAKE_TOOLCHAIN_FILE=/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/gentoo_toolchain.cmake  /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6
>Not searching for unused variables given on the command line.
>loading initial cache file /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/gentoo_common_config.cmake
>-- The C compiler identification is Clang 10.0.1
>-- The CXX compiler identification is Clang 10.0.1
>-- Detecting C compiler ABI info
>-- Detecting C compiler ABI info - done
>-- Check for working C compiler: /usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang - skipped
>-- Detecting C compile features
>-- Detecting C compile features - done
>-- Detecting CXX compiler ABI info
>-- Detecting CXX compiler ABI info - done
>-- Check for working CXX compiler: /usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang++ - skipped
>-- Detecting CXX compile features
>-- Detecting CXX compile features - done
>-- lmdemo will be linked against levmar;m;-lblas -llapack
>-- <<< Gentoo configuration >>>
>Build type      Gentoo
>Install path    /usr
>Compiler flags:
>C               -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color
>C++             -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color
>Linker flags:
>Executable      -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld
>Module          -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld
>Shared          -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld
>
>-- Configuring done
>-- Generating done
>-- Build files have been written to: /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build
>>>> Source configured.
>>>> Compiling source in /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6 ...
>>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build"
>make -j16 V=1 VERBOSE=1 
>/usr/bin/cmake -S/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6 -B/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build --check-build-system CMakeFiles/Makefile.cmake 0
>/usr/bin/cmake -E cmake_progress_start /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/CMakeFiles /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build//CMakeFiles/progress.marks
>make  -f CMakeFiles/Makefile2 all
>make[1]: Entering directory '/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build'
>make  -f CMakeFiles/levmar.dir/build.make CMakeFiles/levmar.dir/depend
>make[2]: Entering directory '/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build'
>cd /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6 /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6 /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/CMakeFiles/levmar.dir/DependInfo.cmake
>Dependee "/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/CMakeFiles/levmar.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/CMakeFiles/levmar.dir/depend.internal".
>Dependee "/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/CMakeFiles/levmar.dir/depend.internal".
>Scanning dependencies of target levmar
>make[2]: Leaving directory '/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build'
>make  -f CMakeFiles/levmar.dir/build.make CMakeFiles/levmar.dir/build
>make[2]: Entering directory '/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build'
>[ 10%] Building C object CMakeFiles/levmar.dir/lm.c.o
>/usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang -Dlevmar_EXPORTS -I/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6  -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -o CMakeFiles/levmar.dir/lm.c.o -c /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6/lm.c
>[ 20%] Building C object CMakeFiles/levmar.dir/Axb.c.o
>[ 30%] Building C object CMakeFiles/levmar.dir/misc.c.o
>[ 40%] Building C object CMakeFiles/levmar.dir/lmlec.c.o
>/usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang -Dlevmar_EXPORTS -I/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6  -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -o CMakeFiles/levmar.dir/Axb.c.o -c /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6/Axb.c
>/usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang -Dlevmar_EXPORTS -I/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6  -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -o CMakeFiles/levmar.dir/misc.c.o -c /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6/misc.c
>/usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang -Dlevmar_EXPORTS -I/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6  -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -o CMakeFiles/levmar.dir/lmlec.c.o -c /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6/lmlec.c
>[ 50%] Building C object CMakeFiles/levmar.dir/lmbleic.c.o
>/usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang -Dlevmar_EXPORTS -I/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6  -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -o CMakeFiles/levmar.dir/lmbleic.c.o -c /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6/lmbleic.c
>[ 70%] Building C object CMakeFiles/levmar.dir/lmblec.c.o
>[ 70%] Building C object CMakeFiles/levmar.dir/lmbc.c.o
>/usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang -Dlevmar_EXPORTS -I/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6  -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -o CMakeFiles/levmar.dir/lmbc.c.o -c /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6/lmbc.c
>/usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang -Dlevmar_EXPORTS -I/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6  -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -fPIC -o CMakeFiles/levmar.dir/lmblec.c.o -c /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6/lmblec.c
>[ 80%] Linking C shared library liblevmar.so
>/usr/bin/cmake -E cmake_link_script CMakeFiles/levmar.dir/link.txt --verbose=1
>/usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang -fPIC -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld -shared -Wl,-soname,liblevmar.so -o liblevmar.so CMakeFiles/levmar.dir/lm.c.o CMakeFiles/levmar.dir/Axb.c.o CMakeFiles/levmar.dir/misc.c.o CMakeFiles/levmar.dir/lmlec.c.o CMakeFiles/levmar.dir/lmbc.c.o CMakeFiles/levmar.dir/lmblec.c.o CMakeFiles/levmar.dir/lmbleic.c.o 
>make[2]: Leaving directory '/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build'
>[ 80%] Built target levmar
>make  -f CMakeFiles/lmdemo.dir/build.make CMakeFiles/lmdemo.dir/depend
>make[2]: Entering directory '/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build'
>cd /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6 /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6 /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/CMakeFiles/lmdemo.dir/DependInfo.cmake
>Dependee "/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/CMakeFiles/lmdemo.dir/DependInfo.cmake" is newer than depender "/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/CMakeFiles/lmdemo.dir/depend.internal".
>Dependee "/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/CMakeFiles/lmdemo.dir/depend.internal".
>Scanning dependencies of target lmdemo
>make[2]: Leaving directory '/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build'
>make  -f CMakeFiles/lmdemo.dir/build.make CMakeFiles/lmdemo.dir/build
>make[2]: Entering directory '/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build'
>[ 90%] Building C object CMakeFiles/lmdemo.dir/lmdemo.c.o
>/usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang  -I/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6  -DNDEBUG -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -o CMakeFiles/lmdemo.dir/lmdemo.c.o -c /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6/lmdemo.c
>[100%] Linking C executable lmdemo
>/usr/bin/cmake -E cmake_link_script CMakeFiles/lmdemo.dir/link.txt --verbose=1
>/usr/lib/llvm/10/bin/x86_64-pc-linux-gnu-clang -O2 -pipe -march=native -frecord-gcc-switches -fno-diagnostics-color -Wl,-O1 -Wl,--as-needed -Wl,--defsym=__gentoo_check_ldflags__=0 -fuse-ld=lld -rdynamic CMakeFiles/lmdemo.dir/lmdemo.c.o -o lmdemo   -L/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build  -Wl,-rpath,/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build liblevmar.so -lm -lblas -llapack 
>make[2]: Leaving directory '/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build'
>[100%] Built target lmdemo
>make[1]: Leaving directory '/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build'
>/usr/bin/cmake -E cmake_progress_start /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/CMakeFiles 0
>>>> Source compiled.
>>>> Test phase: sci-libs/levmar-2.6
>./lmdemo: symbol lookup error: /var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build/liblevmar.so: undefined symbol: dsytrf_
> * ERROR: sci-libs/levmar-2.6::gentoo failed (test phase):
> *   (no error message)
> * 
> * Call stack:
> *     ebuild.sh, line 125:  Called src_test
> *   environment, line 2810:  Called die
> * The specific snippet of code:
> *       ./lmdemo || die
> * 
> * If you need support, post the output of `emerge --info '=sci-libs/levmar-2.6::gentoo'`,
> * the complete build log and the output of `emerge -pqv '=sci-libs/levmar-2.6::gentoo'`.
> * The complete build log is located at '/var/log/emerge-log/build/sci-libs/levmar-2.6:20200910-100201.log'.
> * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/levmar-2.6/temp/build.log'.
> * The ebuild environment file is located at '/var/tmp/portage/sci-libs/levmar-2.6/temp/environment'.
> * Working directory: '/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6_build'
> * S: '/var/tmp/portage/sci-libs/levmar-2.6/work/levmar-2.6'

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Attachments on bug 741506: 659376