sci-biology:newick-utils-1.6:20200313-054610.log

sci-biology:newick-utils-1.6:20200313-054610.log (text/plain), 29.97 KB, created by Toralf Förster on 2020-03-13 07:45:31 UTC

 * Package:    sci-biology/newick-utils-1.6
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
>>> Unpacking source...
>>> Unpacking newick-utils-1.6.tar.gz to /var/tmp/portage/sci-biology/newick-utils-1.6/work
>>> Source unpacked in /var/tmp/portage/sci-biology/newick-utils-1.6/work
>>> Preparing source in /var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6 ...
 * econf: updating newick-utils-1.6/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating newick-utils-1.6/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --docdir=/usr/share/doc/newick-utils-1.6 --htmldir=/usr/share/doc/newick-utils-1.6/html --libdir=/usr/lib64
checking for a BSD-compatible install... /usr/lib/portage/python3.6/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking for bison... bison -y
checking for flex... flex
checking lex output file root... lex.yy
checking lex library... -lfl
checking whether yytext is a pointer... yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
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checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-dlltool... no
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checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
checking for archiver @FILE support... @
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checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for sysroot... no
checking for x86_64-pc-linux-gnu-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
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checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
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checking for alloca... yes
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checking libintl.h usability... yes
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checking malloc.h usability... yes
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checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for unistd.h... (cached) yes
checking for xmlParseMemory in -lxml2... yes
checking libxml/tree.h usability... yes
checking libxml/tree.h presence... yes
checking for libxml/tree.h... yes
checking libxml/parser.h usability... yes
checking libxml/parser.h presence... yes
checking for libxml/parser.h... yes
checking libxml/xpath.h usability... yes
checking libxml/xpath.h presence... yes
checking for libxml/xpath.h... yes
checking libguile.h usability... no
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checking for scm_with_guile in -lguile... no
checking lua.h usability... yes
checking lua.h presence... yes
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checking for library containing luaL_openlibs... -llua
configure: libguile missing (disabled).
checking for an ANSI C-conforming const... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking for working strtod... yes
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configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating tests/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6 ...
make -j1 
make  all-recursive
make[1]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6'
Making all in src
make[2]: Entering directory '/var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6/src'
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c -o newick_parser.lo newick_parser.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c newick_parser.c  -fPIC -DPIC -o .libs/newick_parser.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c newick_parser.c -o newick_parser.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c -o newick_scanner.lo newick_scanner.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c newick_scanner.c  -fPIC -DPIC -o .libs/newick_scanner.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c newick_scanner.c -o newick_scanner.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c -o rnode.lo rnode.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c rnode.c  -fPIC -DPIC -o .libs/rnode.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c rnode.c -o rnode.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c -o list.lo list.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c list.c  -fPIC -DPIC -o .libs/list.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c list.c -o list.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c -o parser.lo parser.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c parser.c  -fPIC -DPIC -o .libs/parser.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c parser.c -o parser.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c -o link.lo link.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c link.c  -fPIC -DPIC -o .libs/link.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c link.c -o link.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c -o tree.lo tree.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c tree.c  -fPIC -DPIC -o .libs/tree.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c tree.c -o tree.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c -o nodemap.lo nodemap.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c nodemap.c  -fPIC -DPIC -o .libs/nodemap.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c nodemap.c -o nodemap.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c -o hash.lo hash.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c hash.c  -fPIC -DPIC -o .libs/hash.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c hash.c -o hash.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c -o rnode_iterator.lo rnode_iterator.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c rnode_iterator.c  -fPIC -DPIC -o .libs/rnode_iterator.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c rnode_iterator.c -o rnode_iterator.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c -o masprintf.lo masprintf.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c masprintf.c  -fPIC -DPIC -o .libs/masprintf.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c masprintf.c -o masprintf.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c -o to_newick.lo to_newick.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c to_newick.c  -fPIC -DPIC -o .libs/to_newick.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c to_newick.c -o to_newick.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c -o concat.lo concat.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c concat.c  -fPIC -DPIC -o .libs/concat.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c concat.c -o concat.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c -o lca.lo lca.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c lca.c  -fPIC -DPIC -o .libs/lca.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c lca.c -o lca.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c -o error.lo error.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c error.c  -fPIC -DPIC -o .libs/error.o
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -I/usr/include/libxml2 -O2 -pipe -march=native -c error.c -o error.o >/dev/null 2>&1
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o libnw.la -rpath /usr/lib64 newick_parser.lo newick_scanner.lo rnode.lo list.lo parser.lo link.lo tree.lo nodemap.lo hash.lo rnode_iterator.lo masprintf.lo to_newick.lo concat.lo lca.lo error.lo   -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -shared  -fPIC -DPIC  .libs/newick_parser.o .libs/newick_scanner.o .libs/rnode.o .libs/list.o .libs/parser.o .libs/link.o .libs/tree.o .libs/nodemap.o .libs/hash.o .libs/rnode_iterator.o .libs/masprintf.o .libs/to_newick.o .libs/concat.o .libs/lca.o .libs/error.o   -Wl,-rpath -Wl,/usr/lib64/ -Wl,-rpath -Wl,/usr/lib64/ /usr/lib64//liblua.so -ldl -lxml2 -lm  -O2 -march=native -Wl,-O1 -Wl,--as-needed   -Wl,-soname -Wl,libnw.so.0 -o .libs/libnw.so.0.0.0
libtool: link: (cd ".libs" && rm -f "libnw.so.0" && ln -s "libnw.so.0.0.0" "libnw.so.0")
libtool: link: (cd ".libs" && rm -f "libnw.so" && ln -s "libnw.so.0.0.0" "libnw.so")
libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libnw.a  newick_parser.o newick_scanner.o rnode.o list.o parser.o link.o tree.o nodemap.o hash.o rnode_iterator.o masprintf.o to_newick.o concat.o lca.o error.o
libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libnw.a
libtool: link: ( cd ".libs" && rm -f "libnw.la" && ln -s "../libnw.la" "libnw.la" )
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c indent.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c indent_lex.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_indent indent.o indent_lex.o  -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o nw_indent indent.o indent_lex.o  /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/ -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c display.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c canvas.c
In file included from /usr/include/string.h:495,
                 from canvas.c:32:
In function ‘strncpy’,
    inlined from ‘canvas_write’ at canvas.c:114:2:
/usr/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
canvas.c: In function ‘canvas_write’:
canvas.c:110:20: note: length computed here
  110 |  int text_length = strlen(text);
      |                    ^~~~~~~~~~~~
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c text_graph.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c simple_node_pos.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c svg_graph.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c readline.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c node_pos_alloc.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c xml_utils.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c graph_common.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c svg_graph_ortho.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c svg_graph_radial.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_display display.o canvas.o text_graph.o simple_node_pos.o svg_graph.o readline.o node_pos_alloc.o xml_utils.o graph_common.o svg_graph_ortho.o svg_graph_radial.o -lm libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_display display.o canvas.o text_graph.o simple_node_pos.o svg_graph.o readline.o node_pos_alloc.o xml_utils.o graph_common.o svg_graph_ortho.o svg_graph_radial.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c clade.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c subtree.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_clade clade.o subtree.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_clade clade.o subtree.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c reroot.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_reroot reroot.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_reroot reroot.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c rename.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_rename rename.o readline.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_rename rename.o readline.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c condense.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_condense condense.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_condense condense.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c support.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c node_set.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_support support.o node_set.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_support support.o node_set.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c address_scanner.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c address_parser.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c tree_editor.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c enode.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_ed address_scanner.o address_parser.o tree_editor.o enode.o -lm libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_ed address_scanner.o address_parser.o tree_editor.o enode.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c topology.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_topology topology.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_topology topology.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c distance.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_distance distance.o simple_node_pos.o node_pos_alloc.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_distance distance.o simple_node_pos.o node_pos_alloc.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c labels.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_labels labels.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_labels labels.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c prune.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_prune prune.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_prune prune.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c order.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c order_tree.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_order order.o order_tree.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_order order.o order_tree.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c match.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_match match.o order_tree.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_match match.o order_tree.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c generate.c
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c tree_models.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_gen generate.o tree_models.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_gen generate.o tree_models.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c trim.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_trim trim.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_trim trim.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c duration.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_duration duration.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_duration duration.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c stats.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_stats stats.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_stats stats.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I..   -I/usr/include/libxml2    -O2 -pipe -march=native -c lua_tree_editor.c
lua_tree_editor.c: In function ‘luaopen_lnode’:
lua_tree_editor.c:942:2: warning: implicit declaration of function ‘luaL_openlib’; did you mean ‘luaL_openlibs’? [-Wimplicit-function-declaration]
  942 |  luaL_openlib(L, "lnode", lnodelib_f, 0);
      |  ^~~~~~~~~~~~
      |  luaL_openlibs
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o nw_luaed lua_tree_editor.o libnw.la -llua -lxml2 -lm 
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -Wl,--as-needed -o .libs/nw_luaed lua_tree_editor.o  ./.libs/libnw.so /usr/lib64//liblua.so -ldl -lxml2 -lm -Wl,-rpath -Wl,/usr/lib64/
/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/bin/ld: lua_tree_editor.o: in function `main':
lua_tree_editor.c:(.text.startup+0x1c6): undefined reference to `luaL_openlib'
collect2: error: ld returned 1 exit status
make[2]: *** [Makefile:514: nw_luaed] Error 1
make[2]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6/src'
make[1]: *** [Makefile:320: all-recursive] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6'
make: *** [Makefile:249: all] Error 2
 * ERROR: sci-biology/newick-utils-1.6::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-biology/newick-utils-1.6::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-biology/newick-utils-1.6::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-biology:newick-utils-1.6:20200313-054610.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/newick-utils-1.6/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-biology/newick-utils-1.6/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6'
 * S: '/var/tmp/portage/sci-biology/newick-utils-1.6/work/newick-utils-1.6'