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Gentoo's Bugzilla – Attachment 591212 Details for
Bug 695800
dev-python/graph-tool-2.27 - graph_sfdp.cc:55:68: error: call of overloaded ‘any_cast<group_map_t>(boost::python::extract<boost::any>)’ is ambiguous
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build.log
graph-tool-2.27:20190924-175026.log (text/plain), 201.30 KB, created by
Markus Walter
on 2019-09-28 13:58:48 UTC
(
hide
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Description:
build.log
Filename:
MIME Type:
Creator:
Markus Walter
Created:
2019-09-28 13:58:48 UTC
Size:
201.30 KB
patch
obsolete
> * Package: dev-python/graph-tool-2.27 > * Repository: gentoo > * Maintainer: python@gentoo.org horea.christ@gmail.com > * USE: abi_x86_64 amd64 cairo elibc_glibc kernel_linux openmp python_targets_python2_7 python_targets_python3_6 python_targets_python3_7 userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking graph-tool-2.27.tar.bz2 to /var/tmp/portage/dev-python/graph-tool-2.27/work >>>> Source unpacked in /var/tmp/portage/dev-python/graph-tool-2.27/work >>>> Preparing source in /var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27 ... > * Will copy sources from /var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27 > * python2_7: copying to /var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python2_7 > * python3_6: copying to /var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python3_6 > * python3_7: copying to /var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python3_7 >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27 ... > * python2_7: running run_in_build_dir configure > * econf: updating graph-tool-2.27-python3_7/build-aux/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.27-python3_7/build-aux/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating graph-tool-2.27-python3_6/build-aux/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.27-python3_6/build-aux/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating graph-tool-2.27-python2_7/build-aux/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.27-python2_7/build-aux/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating graph-tool-2.27/build-aux/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.27/build-aux/config.sub with /usr/share/gnuconfig/config.sub >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/graph-tool-2.27 --htmldir=/usr/share/doc/graph-tool-2.27/html --with-sysroot=/ --libdir=/usr/lib64 --disable-static --enable-openmp --enable-cairo --with-boost-python=boost_python27 >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking target system type... x86_64-pc-linux-gnu >checking for a BSD-compatible install... /usr/lib/portage/python3.7/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking how to create a pax tar archive... gnutar >checking whether make supports nested variables... (cached) yes >checking for style of include used by make... GNU >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking for library containing strerror... none required >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking minix/config.h usability... no >checking minix/config.h presence... no >checking for minix/config.h... no >checking whether it is safe to define __EXTENSIONS__... yes >checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of x86_64-pc-linux-gnu-g++... none >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C99... unsupported >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed >checking for x86_64-pc-linux-gnu-gcc option to accept ISO Standard C... (cached) none needed >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ANSI C header files... (cached) yes >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B >checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... / >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config >checking pkg-config is at least version 0.9.0... yes >checking whether x86_64-pc-linux-gnu-g++ supports C++14 features by default... yes >checking whether to enable debug info... no >checking whether to enable parallel algorithms with openmp... yes >checking for OpenMP flag of C++ compiler... -fopenmp >checking whether to enable cairo drawing... yes >checking for Expat XML Parser headers in /usr/include... found >checking for Expat XML Parser libraries... found >checking for Expat XML Parser... yes >checking whether /usr/bin/python2.7 version is >= 2.7... yes >checking for /usr/bin/python2.7 version... 2.7 >checking for /usr/bin/python2.7 platform... linux2 >checking for /usr/bin/python2.7 script directory... ${prefix}/lib64/python2.7/site-packages >checking for /usr/bin/python2.7 extension module directory... ${exec_prefix}/lib64/python2.7/site-packages >checking for python2.7... /usr/bin/python2.7 >checking for a version of Python >= '2.1.0'... yes >checking for a version of Python == '2.7.16'... yes >checking for the distutils Python package... yes >checking for Python include path... -I/usr/include/python2.7 >checking for Python library path... -L/usr/lib64 -lpython2.7 >checking for Python site-packages path... /usr/lib64/python2.7/site-packages >checking python extra libraries... -lpthread -ldl -lutil -lm >checking python extra linking flags... -Xlinker -export-dynamic >checking consistency of all components of python development environment... yes >checking for boostlib >= 1.55.0 (105500)... yes >checking whether the Boost::Python library is available... yes >checking whether boost_python27 is the correct library... yes >checking whether the Boost::IOStreams library is available... yes >checking for exit in -lboost_iostreams-mt... yes >checking whether the Boost::Regex library is available... yes >checking for exit in -lboost_regex-mt... yes >checking whether the Boost::Context library is available... no >configure: WARNING: No usable boost::context found! Some functionality will be disabled in the library. >checking whether the Boost::Coroutine library is available... yes >checking for exit in -lboost_coroutine-mt... yes >checking whether the Boost::Graph library is available... yes >checking for exit in -lboost_graph-mt... yes >checking whether the Boost::Thread library is available... yes >checking for exit in -lboost_thread... yes >checking for __gmpz_init in -lgmp... yes >checking for __gmpz_init in -lgmp... (cached) yes >checking whether CGAL is available in /usr... yes >checking whether to enable cgal debbuging with valgrind... no >checking python2.7 module: numpy... yes >checking for numpy/arrayobject.h... yes >checking for CAIROMM... yes >checking python2.7 module: cairo... yes >checking pycairo/pycairo.h usability... yes >checking pycairo/pycairo.h presence... yes >checking for pycairo/pycairo.h... yes >checking whether to enable sparsehash... yes >checking for SPARSEHASH... yes >checking sparsehash/dense_hash_set usability... yes >checking sparsehash/dense_hash_set presence... yes >checking for sparsehash/dense_hash_set... yes >configure: pkgconfig directory is ${libdir}/pkgconfig >checking our pkgconfig libname... graph-tool-py2.7 >checking our pkgconfig version... 2.27 >checking our pkgconfig_libdir... ${libdir}/pkgconfig >expanded our pkgconfig_libdir... /usr/lib64/pkgconfig >checking our pkgconfig_libfile... graph-tool-py2.7.pc >checking our package / suffix... graph-tool / >checking our pkgconfig description... graph-tool Python library >checking our pkgconfig requires... >checking our pkgconfig ext libs... -L/usr/lib64 -lpython2.7 -lboost_python27 >checking our pkgconfig cppflags... -I/usr/lib64/python2.7/site-packages/graph_tool/include -I/usr/lib64/python2.7/site-packages/graph_tool/include/boost-workaround -I/usr/include/python2.7 -pthread -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include >checking our pkgconfig ldflags... >noninstalled pkgconfig -L /var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python2_7/src/.libs >noninstalled pkgconfig -I /var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python2_7/. >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating src/Makefile >config.status: creating src/graph/Makefile >config.status: creating src/graph/centrality/Makefile >config.status: creating src/graph/clustering/Makefile >config.status: creating src/graph/correlations/Makefile >config.status: creating src/graph/draw/Makefile >config.status: creating src/graph/flow/Makefile >config.status: creating src/graph/generation/Makefile >config.status: creating src/graph/inference/Makefile >config.status: creating src/graph/layout/Makefile >config.status: creating src/graph/search/Makefile >config.status: creating src/graph/spectral/Makefile >config.status: creating src/graph/stats/Makefile >config.status: creating src/graph/topology/Makefile >config.status: creating src/graph/util/Makefile >config.status: creating src/graph_tool/Makefile >config.status: creating config.h >config.status: executing depfiles commands >config.status: executing libtool commands >config.status: executing graph-tool-py2.7.pc commands >config.status: creating graph-tool-py2.7.pc.in >config.status: creating graph-tool-py2.7.pc >config.status: creating graph-tool-py2.7-uninstalled.pc >config.status: creating graph-tool-py2.7-uninstalled.sh >[38;5;2m================================================================================[m(B >[38;5;2m CONFIGURATION SUMMARY [m(B >[38;5;2m================================================================================[m(B >[38;5;3mUsing python version: [38;5;4m2.7.16[m(B >[38;5;3mPython interpreter: [38;5;4m/usr/bin/python2.7[m(B >[38;5;3mInstallation path: [38;5;4m/usr/lib64/python2.7/site-packages/graph_tool[m(B > >[38;5;3mC++ compiler (CXX): [38;5;4mx86_64-pc-linux-gnu-g++[m(B >[38;5;3mC++ compiler version: [38;5;4m9.2.0[m(B > >[38;5;3mPrefix: [38;5;4m/usr[m(B >[38;5;3mPkgconfigdir: [38;5;4m${libdir}/pkgconfig[m(B > >[38;5;3mPython CPP flags: [38;5;4m-I/usr/include/python2.7[m(B >[38;5;3mPython LD flags: [38;5;4m-L/usr/lib64 -lpython2.7[m(B >[38;5;3mBoost CPP flags: [38;5;4m-pthread -I/usr/include[m(B >[38;5;3mBoost LD flags: [38;5;4m-lboost_iostreams-mt -lboost_python27 -lboost_regex-mt -lboost_coroutine-mt[m(B >[38;5;3mNumpy CPP flags: [38;5;4m-I/usr/lib64/python2.7/site-packages/numpy/core/include[m(B >[38;5;3mSparsehash CPP flags: [38;5;4m[m(B >[38;5;3mCGAL CPP flags: [38;5;4m-I/usr/include[m(B >[38;5;3mCGAL LD flags: [38;5;4m-L/usr/lib -lCGAL -lCGAL_Core -lgmp -lboost_thread -lpthread[m(B >[38;5;3mExpat CPP flags: [38;5;4m-I/usr/include[m(B >[38;5;3mExpat LD flags: [38;5;4m-L/usr/lib -lexpat[m(B >[38;5;3mCairomm CPP flags: [38;5;4m-I/usr/include/cairomm-1.0 -I/usr/lib64/cairomm-1.0/include -I/usr/include/cairo -I/usr/lib64/libffi-3.3_rc0/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I/usr/include/sigc++-2.0 -I/usr/lib64/sigc++-2.0/include[m(B >[38;5;3mCairomm LD flags: [38;5;4m-lcairomm-1.0 -lcairo -lsigc-2.0[m(B >[38;5;3mOpenMP compiler flags: [38;5;4m-fopenmp[m(B >[38;5;3mOpenMP LD flags: [38;5;4m[m(B >[38;5;3mExtra CPPFLAGS: [38;5;4m-DNDEBUG [m(B >[38;5;3mExtra CXXFLAGS: [38;5;4m-fopenmp -O3 -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wall -Wextra -ftemplate-backtrace-limit=0 -O2 -pipe -march=native -finline-functions -floop-nest-optimize -flto=4[m(B >[38;5;3mExtra LDFLAGS: [38;5;4m-Wl,-O1 -Wl,--as-needed[m(B > >[38;5;3mUsing OpenMP: [38;5;5myes[m(B >[38;5;3mUsing sparsehash: [38;5;5myes[m(B >[38;5;3mUsing cairo: [38;5;5myes[m(B >[38;5;2m================================================================================[m(B > * python3_6: running run_in_build_dir configure > * econf: updating graph-tool-2.27-python3_7/build-aux/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating graph-tool-2.27-python3_7/build-aux/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.27-python3_6/build-aux/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating graph-tool-2.27-python3_6/build-aux/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.27-python2_7/build-aux/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating graph-tool-2.27-python2_7/build-aux/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.27/build-aux/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating graph-tool-2.27/build-aux/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/graph-tool-2.27 --htmldir=/usr/share/doc/graph-tool-2.27/html --with-sysroot=/ --libdir=/usr/lib64 --disable-static --enable-openmp --enable-cairo --with-boost-python=boost_python36 >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking target system type... x86_64-pc-linux-gnu >checking for a BSD-compatible install... /usr/lib/portage/python3.7/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking how to create a pax tar archive... gnutar >checking whether make supports nested variables... (cached) yes >checking for style of include used by make... GNU >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking for library containing strerror... none required >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking minix/config.h usability... no >checking minix/config.h presence... no >checking for minix/config.h... no >checking whether it is safe to define __EXTENSIONS__... yes >checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of x86_64-pc-linux-gnu-g++... none >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C99... unsupported >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed >checking for x86_64-pc-linux-gnu-gcc option to accept ISO Standard C... (cached) none needed >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ANSI C header files... (cached) yes >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B >checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... / >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... 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(cached) yes >checking whether CGAL is available in /usr... yes >checking whether to enable cgal debbuging with valgrind... no >checking python3.6 module: numpy... yes >checking for numpy/arrayobject.h... yes >checking for CAIROMM... yes >checking python3.6 module: cairo... yes >checking pycairo/py3cairo.h usability... yes >checking pycairo/py3cairo.h presence... yes >checking for pycairo/py3cairo.h... yes >checking whether to enable sparsehash... yes >checking for SPARSEHASH... yes >checking sparsehash/dense_hash_set usability... yes >checking sparsehash/dense_hash_set presence... yes >checking for sparsehash/dense_hash_set... yes >configure: pkgconfig directory is ${libdir}/pkgconfig >checking our pkgconfig libname... graph-tool-py3.6 >checking our pkgconfig version... 2.27 >checking our pkgconfig_libdir... ${libdir}/pkgconfig >expanded our pkgconfig_libdir... /usr/lib64/pkgconfig >checking our pkgconfig_libfile... graph-tool-py3.6.pc >checking our package / suffix... graph-tool / >checking our pkgconfig description... graph-tool Python library >checking our pkgconfig requires... >checking our pkgconfig ext libs... -L/usr/lib64 -lpython3.6m -lboost_python36 >checking our pkgconfig cppflags... -I/usr/lib64/python3.6/site-packages/graph_tool/include -I/usr/lib64/python3.6/site-packages/graph_tool/include/boost-workaround -I/usr/include/python3.6m -pthread -I/usr/include -I/usr/lib64/python3.6/site-packages/numpy/core/include >checking our pkgconfig ldflags... >noninstalled pkgconfig -L /var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python3_6/src/.libs >noninstalled pkgconfig -I /var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python3_6/. >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating src/Makefile >config.status: creating src/graph/Makefile >config.status: creating src/graph/centrality/Makefile >config.status: creating src/graph/clustering/Makefile >config.status: creating src/graph/correlations/Makefile >config.status: creating src/graph/draw/Makefile >config.status: creating src/graph/flow/Makefile >config.status: creating src/graph/generation/Makefile >config.status: creating src/graph/inference/Makefile >config.status: creating src/graph/layout/Makefile >config.status: creating src/graph/search/Makefile >config.status: creating src/graph/spectral/Makefile >config.status: creating src/graph/stats/Makefile >config.status: creating src/graph/topology/Makefile >config.status: creating src/graph/util/Makefile >config.status: creating src/graph_tool/Makefile >config.status: creating config.h >config.status: executing depfiles commands >config.status: executing libtool commands >config.status: executing graph-tool-py3.6.pc commands >config.status: creating graph-tool-py3.6.pc.in >config.status: creating graph-tool-py3.6.pc >config.status: creating graph-tool-py3.6-uninstalled.pc >config.status: creating graph-tool-py3.6-uninstalled.sh >[38;5;2m================================================================================[m(B >[38;5;2m CONFIGURATION SUMMARY [m(B >[38;5;2m================================================================================[m(B >[38;5;3mUsing python version: [38;5;4m3.6.9[m(B >[38;5;3mPython interpreter: [38;5;4m/usr/bin/python3.6[m(B >[38;5;3mInstallation path: [38;5;4m/usr/lib64/python3.6/site-packages/graph_tool[m(B > >[38;5;3mC++ compiler (CXX): [38;5;4mx86_64-pc-linux-gnu-g++[m(B >[38;5;3mC++ compiler version: [38;5;4m9.2.0[m(B > >[38;5;3mPrefix: [38;5;4m/usr[m(B >[38;5;3mPkgconfigdir: [38;5;4m${libdir}/pkgconfig[m(B > >[38;5;3mPython CPP flags: [38;5;4m-I/usr/include/python3.6m[m(B >[38;5;3mPython LD flags: [38;5;4m-L/usr/lib64 -lpython3.6m[m(B >[38;5;3mBoost CPP flags: [38;5;4m-pthread -I/usr/include[m(B >[38;5;3mBoost LD flags: [38;5;4m-lboost_iostreams-mt -lboost_python36 -lboost_regex-mt -lboost_coroutine-mt[m(B >[38;5;3mNumpy CPP flags: [38;5;4m-I/usr/lib64/python3.6/site-packages/numpy/core/include[m(B >[38;5;3mSparsehash CPP flags: [38;5;4m[m(B >[38;5;3mCGAL CPP flags: [38;5;4m-I/usr/include[m(B >[38;5;3mCGAL LD flags: [38;5;4m-L/usr/lib -lCGAL -lCGAL_Core -lgmp -lboost_thread -lpthread[m(B >[38;5;3mExpat CPP flags: [38;5;4m-I/usr/include[m(B >[38;5;3mExpat LD flags: [38;5;4m-L/usr/lib -lexpat[m(B >[38;5;3mCairomm CPP flags: [38;5;4m-I/usr/include/cairomm-1.0 -I/usr/lib64/cairomm-1.0/include -I/usr/include/cairo -I/usr/lib64/libffi-3.3_rc0/include -I/usr/include/glib-2.0 -I/usr/lib64/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libdrm -I/usr/include/libpng16 -I/usr/include/sigc++-2.0 -I/usr/lib64/sigc++-2.0/include[m(B >[38;5;3mCairomm LD flags: [38;5;4m-lcairomm-1.0 -lcairo -lsigc-2.0[m(B >[38;5;3mOpenMP compiler flags: [38;5;4m-fopenmp[m(B >[38;5;3mOpenMP LD flags: [38;5;4m[m(B >[38;5;3mExtra CPPFLAGS: [38;5;4m-DNDEBUG [m(B >[38;5;3mExtra CXXFLAGS: [38;5;4m-fopenmp -O3 -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wall -Wextra -ftemplate-backtrace-limit=0 -O2 -pipe -march=native -finline-functions -floop-nest-optimize -flto=4[m(B >[38;5;3mExtra LDFLAGS: [38;5;4m-Wl,-O1 -Wl,--as-needed[m(B > >[38;5;3mUsing OpenMP: [38;5;5myes[m(B >[38;5;3mUsing sparsehash: [38;5;5myes[m(B >[38;5;3mUsing cairo: [38;5;5myes[m(B >[38;5;2m================================================================================[m(B > * python3_7: running run_in_build_dir configure > * econf: updating graph-tool-2.27-python3_7/build-aux/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.27-python3_7/build-aux/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating graph-tool-2.27-python3_6/build-aux/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.27-python3_6/build-aux/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating graph-tool-2.27-python2_7/build-aux/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.27-python2_7/build-aux/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating graph-tool-2.27/build-aux/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating graph-tool-2.27/build-aux/config.sub with /usr/share/gnuconfig/config.sub >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/graph-tool-2.27 --htmldir=/usr/share/doc/graph-tool-2.27/html --with-sysroot=/ --libdir=/usr/lib64 --disable-static --enable-openmp --enable-cairo --with-boost-python=boost_python37 >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking target system type... x86_64-pc-linux-gnu >checking for a BSD-compatible install... /usr/lib/portage/python3.7/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking how to create a pax tar archive... gnutar >checking whether make supports nested variables... 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BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... / >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... 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(cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config >checking pkg-config is at least version 0.9.0... yes >checking whether x86_64-pc-linux-gnu-g++ supports C++14 features by default... yes >checking whether to enable debug info... no >checking whether to enable parallel algorithms with openmp... yes >checking for OpenMP flag of C++ compiler... -fopenmp >checking whether to enable cairo drawing... yes >checking for Expat XML Parser headers in /usr/include... found >checking for Expat XML Parser libraries... found >checking for Expat XML Parser... yes >checking whether /usr/bin/python3.7 version is >= 2.7... yes >checking for /usr/bin/python3.7 version... 3.7 >checking for /usr/bin/python3.7 platform... linux >checking for /usr/bin/python3.7 script directory... ${prefix}/lib/python3.7/site-packages >checking for /usr/bin/python3.7 extension module directory... ${exec_prefix}/lib/python3.7/site-packages >checking for python3.7... /usr/bin/python3.7 >checking for a version of Python >= '2.1.0'... yes >checking for a version of Python == '3.7.4'... yes >checking for the distutils Python package... yes >checking for Python include path... -I/usr/include/python3.7m >checking for Python library path... -L/usr/lib64 -lpython3.7m >checking for Python site-packages path... /usr/lib/python3.7/site-packages >checking python extra libraries... -lcrypt -lpthread -ldl -lutil -lm >checking python extra linking flags... -Xlinker -export-dynamic >checking consistency of all components of python development environment... yes >checking for boostlib >= 1.55.0 (105500)... yes >checking whether the Boost::Python library is available... yes >checking whether boost_python37 is the correct library... yes >checking whether the Boost::IOStreams library is available... yes >checking for exit in -lboost_iostreams-mt... yes >checking whether the Boost::Regex library is available... yes >checking for exit in -lboost_regex-mt... yes >checking whether the Boost::Context library is available... no >configure: WARNING: No usable boost::context found! Some functionality will be disabled in the library. >checking whether the Boost::Coroutine library is available... yes >checking for exit in -lboost_coroutine-mt... yes >checking whether the Boost::Graph library is available... yes >checking for exit in -lboost_graph-mt... yes >checking whether the Boost::Thread library is available... yes >checking for exit in -lboost_thread... yes >checking for __gmpz_init in -lgmp... yes >checking for __gmpz_init in -lgmp... (cached) yes >checking whether CGAL is available in /usr... yes >checking whether to enable cgal debbuging with valgrind... no >checking python3.7 module: numpy... yes >checking for numpy/arrayobject.h... yes >checking for CAIROMM... yes >checking python3.7 module: cairo... yes >checking pycairo/py3cairo.h usability... yes >checking pycairo/py3cairo.h presence... yes >checking for pycairo/py3cairo.h... yes >checking whether to enable sparsehash... yes >checking for SPARSEHASH... yes >checking sparsehash/dense_hash_set usability... yes >checking sparsehash/dense_hash_set presence... yes >checking for sparsehash/dense_hash_set... yes >configure: pkgconfig directory is ${libdir}/pkgconfig >checking our pkgconfig libname... graph-tool-py3.7 >checking our pkgconfig version... 2.27 >checking our pkgconfig_libdir... ${libdir}/pkgconfig >expanded our pkgconfig_libdir... /usr/lib64/pkgconfig >checking our pkgconfig_libfile... graph-tool-py3.7.pc >checking our package / suffix... graph-tool / >checking our pkgconfig description... graph-tool Python library >checking our pkgconfig requires... >checking our pkgconfig ext libs... -L/usr/lib64 -lpython3.7m -lboost_python37 >checking our pkgconfig cppflags... -I/usr/lib/python3.7/site-packages/graph_tool/include -I/usr/lib/python3.7/site-packages/graph_tool/include/boost-workaround -I/usr/include/python3.7m -pthread -I/usr/include -I/usr/lib/python3.7/site-packages/numpy/core/include >checking our pkgconfig ldflags... >noninstalled pkgconfig -L /var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python3_7/src/.libs >noninstalled pkgconfig -I /var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python3_7/. >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating src/Makefile >config.status: creating src/graph/Makefile >config.status: creating src/graph/centrality/Makefile >config.status: creating 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graph_sbm.hh:25, > from graph_sbm.cc:18: >/usr/include/python2.7/pyconfig.h:1220: warning: "_POSIX_C_SOURCE" redefined > 1220 | #define _POSIX_C_SOURCE 200112L > | >In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/x86_64-pc-linux-gnu/bits/os_defines.h:39, > from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/x86_64-pc-linux-gnu/bits/c++config.h:524, > from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/utility:68, > from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/tuple:38, > from graph_sbm.hh:21, > from graph_sbm.cc:18: >/usr/include/features.h:266: note: this is the location of the previous definition > 266 | # define _POSIX_C_SOURCE 200809L > | >In file included from /usr/include/python2.7/Python.h:8, > from ../../../src/graph/graph.hh:22, > from graph_sbm.hh:25, > from graph_sbm.cc:18: >/usr/include/python2.7/pyconfig.h:1242: warning: "_XOPEN_SOURCE" redefined > 1242 | #define _XOPEN_SOURCE 600 > | >In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/x86_64-pc-linux-gnu/bits/os_defines.h:39, > from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/x86_64-pc-linux-gnu/bits/c++config.h:524, > from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/utility:68, > from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/tuple:38, > from graph_sbm.hh:21, > from graph_sbm.cc:18: >/usr/include/features.h:203: note: this is the location of the previous definition > 203 | # define _XOPEN_SOURCE 700 > | >/bin/sh ../../../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -I../../../src/boost-workaround -DHAVE_CONFIG_H -I../../../src/graph -I../../.. -I/usr/include/python2.7 -pthread -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -I/usr/include -DNDEBUG -fopenmp -O3 -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wall -Wextra -ftemplate-backtrace-limit=0 -O2 -pipe -march=native 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>/usr/include/features.h:266: note: this is the location of the previous definition > 266 | # define _POSIX_C_SOURCE 200809L > | >In file included from /usr/include/python2.7/Python.h:8, > from ../../../src/graph/graph.hh:22, > from ../../../src/graph/graph_tool.hh:21, > from support/int_part.cc:21: >/usr/include/python2.7/pyconfig.h:1242: warning: "_XOPEN_SOURCE" redefined > 1242 | #define _XOPEN_SOURCE 600 > | >In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/x86_64-pc-linux-gnu/bits/os_defines.h:39, > from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/x86_64-pc-linux-gnu/bits/c++config.h:524, > from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/bits/stl_algobase.h:59, > from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/vector:60, > from /usr/include/boost/math/special_functions/math_fwd.hpp:26, > from /usr/include/boost/math/special_functions/zeta.hpp:13, > from support/int_part.cc:18: >/usr/include/features.h:203: note: this is 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-pthread -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -DNDEBUG -fopenmp -O3 -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wall -Wextra -ftemplate-backtrace-limit=0 -O2 -pipe -march=native -finline-functions -floop-nest-optimize -flto=4 -c graph_modularity.cc -fPIC -DPIC -o .libs/graph_modularity.o >In file included from /usr/include/python2.7/Python.h:8, > from ../../../src/graph/graph.hh:22, > from ../../../src/graph/graph_tool.hh:21, > from graph_modularity.hh:26, > from graph_modularity.cc:18: >/usr/include/python2.7/pyconfig.h:1220: warning: "_POSIX_C_SOURCE" redefined > 1220 | #define _POSIX_C_SOURCE 200112L > | >In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/x86_64-pc-linux-gnu/bits/os_defines.h:39, > from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/x86_64-pc-linux-gnu/bits/c++config.h:524, > from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/utility:68, > from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/tuple:38, > from graph_modularity.hh:21, > from graph_modularity.cc:18: >/usr/include/features.h:266: note: this is the location of the previous definition > 266 | # define _POSIX_C_SOURCE 200809L > | >In file included from /usr/include/python2.7/Python.h:8, > from ../../../src/graph/graph.hh:22, > from ../../../src/graph/graph_tool.hh:21, > from graph_modularity.hh:26, > from graph_modularity.cc:18: >/usr/include/python2.7/pyconfig.h:1242: warning: "_XOPEN_SOURCE" redefined > 1242 | #define _XOPEN_SOURCE 600 > | >In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/x86_64-pc-linux-gnu/bits/os_defines.h:39, > from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/x86_64-pc-linux-gnu/bits/c++config.h:524, > from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/utility:68, > from /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/include/g++-v9/tuple:38, > from graph_modularity.hh:21, > from graph_modularity.cc:18: >/usr/include/features.h:203: note: this is the location of the previous definition > 203 | # define _XOPEN_SOURCE 700 > | >/bin/sh ../../../libtool --tag=CXX --mode=link x86_64-pc-linux-gnu-g++ -fopenmp -O3 -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wall -Wextra -ftemplate-backtrace-limit=0 -O2 -pipe -march=native -finline-functions -floop-nest-optimize -flto=4 -module -avoid-version -export-dynamic -no-undefined -Wl,-E -Wl,--as-needed -Wl,-O1 -Wl,--as-needed -o libgraph_tool_inference.la -rpath /usr/lib64/python2.7/site-packages/graph_tool/inference blockmodel/graph_blockmodel.lo blockmodel/graph_blockmodel_em.lo blockmodel/graph_blockmodel_exhaustive.lo blockmodel/graph_blockmodel_gibbs.lo blockmodel/graph_blockmodel_imp.lo blockmodel/graph_blockmodel_imp2.lo blockmodel/graph_blockmodel_imp3.lo blockmodel/graph_blockmodel_marginals.lo blockmodel/graph_blockmodel_mcmc.lo blockmodel/graph_blockmodel_merge.lo blockmodel/graph_blockmodel_multicanonical.lo blockmodel/graph_blockmodel_multicanonical_multiflip.lo blockmodel/graph_blockmodel_multiflip_mcmc.lo overlap/graph_blockmodel_overlap.lo overlap/graph_blockmodel_overlap_exhaustive.lo overlap/graph_blockmodel_overlap_gibbs.lo overlap/graph_blockmodel_overlap_mcmc.lo overlap/graph_blockmodel_overlap_mcmc_bundled.lo overlap/graph_blockmodel_overlap_multicanonical.lo overlap/graph_blockmodel_overlap_multicanonical_multiflip.lo overlap/graph_blockmodel_overlap_multiflip_mcmc.lo overlap/graph_blockmodel_overlap_vacate.lo layers/graph_blockmodel_layers.lo layers/graph_blockmodel_layers_exhaustive.lo layers/graph_blockmodel_layers_gibbs.lo layers/graph_blockmodel_layers_imp.lo layers/graph_blockmodel_layers_mcmc.lo layers/graph_blockmodel_layers_merge.lo layers/graph_blockmodel_layers_multicanonical.lo layers/graph_blockmodel_layers_multicanonical_multiflip.lo layers/graph_blockmodel_layers_multiflip_mcmc.lo layers/graph_blockmodel_layers_overlap.lo layers/graph_blockmodel_layers_overlap_exhaustive.lo layers/graph_blockmodel_layers_overlap_gibbs.lo layers/graph_blockmodel_layers_overlap_mcmc.lo layers/graph_blockmodel_layers_overlap_mcmc_bundled.lo layers/graph_blockmodel_layers_overlap_multicanonical.lo layers/graph_blockmodel_layers_overlap_multicanonical_multiflip.lo layers/graph_blockmodel_layers_overlap_multiflip_mcmc.lo layers/graph_blockmodel_layers_overlap_vacate.lo uncertain/graph_blockmodel_measured.lo uncertain/graph_blockmodel_measured_mcmc.lo uncertain/graph_blockmodel_uncertain.lo uncertain/graph_blockmodel_uncertain_marginal.lo uncertain/graph_blockmodel_uncertain_mcmc.lo support/cache.lo support/int_part.lo support/spence.lo graph_inference.lo graph_modularity.lo -L/usr/lib64 -lpython2.7 -lboost_iostreams-mt -lboost_python27 -lboost_regex-mt -lboost_coroutine-mt -lexpat -L/usr/lib -lgmp -lgmp >libtool: link: x86_64-pc-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib64/crti.o /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/crtbeginS.o blockmodel/.libs/graph_blockmodel.o blockmodel/.libs/graph_blockmodel_em.o blockmodel/.libs/graph_blockmodel_exhaustive.o blockmodel/.libs/graph_blockmodel_gibbs.o blockmodel/.libs/graph_blockmodel_imp.o blockmodel/.libs/graph_blockmodel_imp2.o blockmodel/.libs/graph_blockmodel_imp3.o blockmodel/.libs/graph_blockmodel_marginals.o blockmodel/.libs/graph_blockmodel_mcmc.o blockmodel/.libs/graph_blockmodel_merge.o blockmodel/.libs/graph_blockmodel_multicanonical.o blockmodel/.libs/graph_blockmodel_multicanonical_multiflip.o blockmodel/.libs/graph_blockmodel_multiflip_mcmc.o overlap/.libs/graph_blockmodel_overlap.o overlap/.libs/graph_blockmodel_overlap_exhaustive.o overlap/.libs/graph_blockmodel_overlap_gibbs.o overlap/.libs/graph_blockmodel_overlap_mcmc.o overlap/.libs/graph_blockmodel_overlap_mcmc_bundled.o overlap/.libs/graph_blockmodel_overlap_multicanonical.o overlap/.libs/graph_blockmodel_overlap_multicanonical_multiflip.o overlap/.libs/graph_blockmodel_overlap_multiflip_mcmc.o overlap/.libs/graph_blockmodel_overlap_vacate.o layers/.libs/graph_blockmodel_layers.o layers/.libs/graph_blockmodel_layers_exhaustive.o layers/.libs/graph_blockmodel_layers_gibbs.o layers/.libs/graph_blockmodel_layers_imp.o layers/.libs/graph_blockmodel_layers_mcmc.o layers/.libs/graph_blockmodel_layers_merge.o layers/.libs/graph_blockmodel_layers_multicanonical.o layers/.libs/graph_blockmodel_layers_multicanonical_multiflip.o layers/.libs/graph_blockmodel_layers_multiflip_mcmc.o layers/.libs/graph_blockmodel_layers_overlap.o layers/.libs/graph_blockmodel_layers_overlap_exhaustive.o layers/.libs/graph_blockmodel_layers_overlap_gibbs.o layers/.libs/graph_blockmodel_layers_overlap_mcmc.o layers/.libs/graph_blockmodel_layers_overlap_mcmc_bundled.o layers/.libs/graph_blockmodel_layers_overlap_multicanonical.o layers/.libs/graph_blockmodel_layers_overlap_multicanonical_multiflip.o layers/.libs/graph_blockmodel_layers_overlap_multiflip_mcmc.o layers/.libs/graph_blockmodel_layers_overlap_vacate.o uncertain/.libs/graph_blockmodel_measured.o uncertain/.libs/graph_blockmodel_measured_mcmc.o uncertain/.libs/graph_blockmodel_uncertain.o uncertain/.libs/graph_blockmodel_uncertain_marginal.o uncertain/.libs/graph_blockmodel_uncertain_mcmc.o support/.libs/cache.o support/.libs/int_part.o support/.libs/spence.o .libs/graph_inference.o .libs/graph_modularity.o -L/usr/lib64 -lpython2.7 -lboost_iostreams-mt -lboost_python27 -lboost_regex-mt -lboost_coroutine-mt -lexpat -L/usr/lib -lgmp -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/crtendS.o /usr/lib/gcc/x86_64-pc-linux-gnu/9.2.0/../../../../lib64/crtn.o -fopenmp -O3 -O2 -march=native -flto=4 -Wl,-E -Wl,--as-needed -Wl,-O1 -Wl,--as-needed -fopenmp -Wl,-soname -Wl,libgraph_tool_inference.so -o .libs/libgraph_tool_inference.so >libtool: link: ( cd ".libs" && rm -f "libgraph_tool_inference.la" && ln -s "../libgraph_tool_inference.la" "libgraph_tool_inference.la" ) >make[4]: Leaving directory '/var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python2_7/src/graph/inference' >Making all in layout >make[4]: Entering directory '/var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python2_7/src/graph/layout' >/bin/sh ../../../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -I../../../src/boost-workaround -DHAVE_CONFIG_H -I../../../src/graph -I../../.. -I/usr/include/python2.7 -pthread -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -DNDEBUG -fopenmp -O3 -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wall -Wextra -ftemplate-backtrace-limit=0 -O2 -pipe -march=native -finline-functions -floop-nest-optimize -flto=4 -c -o graph_arf.lo graph_arf.cc >libtool: compile: x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -I../../../src/boost-workaround -DHAVE_CONFIG_H -I../../../src/graph -I../../.. -I/usr/include/python2.7 -pthread -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -DNDEBUG -fopenmp -O3 -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wall -Wextra -ftemplate-backtrace-limit=0 -O2 -pipe -march=native -finline-functions -floop-nest-optimize -flto=4 -c graph_arf.cc -fPIC -DPIC -o .libs/graph_arf.o >/bin/sh ../../../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -I../../../src/boost-workaround -DHAVE_CONFIG_H -I../../../src/graph -I../../.. -I/usr/include/python2.7 -pthread -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -DNDEBUG -fopenmp -O3 -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wall -Wextra -ftemplate-backtrace-limit=0 -O2 -pipe -march=native -finline-functions -floop-nest-optimize -flto=4 -c -o graph_planar_layout.lo graph_planar_layout.cc >libtool: compile: x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -I../../../src/boost-workaround -DHAVE_CONFIG_H -I../../../src/graph -I../../.. -I/usr/include/python2.7 -pthread -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -DNDEBUG -fopenmp -O3 -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wall -Wextra -ftemplate-backtrace-limit=0 -O2 -pipe -march=native -finline-functions -floop-nest-optimize -flto=4 -c graph_planar_layout.cc -fPIC -DPIC -o .libs/graph_planar_layout.o >/bin/sh ../../../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -I../../../src/boost-workaround -DHAVE_CONFIG_H -I../../../src/graph -I../../.. -I/usr/include/python2.7 -pthread -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -DNDEBUG -fopenmp -O3 -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wall -Wextra -ftemplate-backtrace-limit=0 -O2 -pipe -march=native -finline-functions -floop-nest-optimize -flto=4 -c -o graph_fruchterman_reingold.lo graph_fruchterman_reingold.cc >libtool: compile: x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -I../../../src/boost-workaround -DHAVE_CONFIG_H -I../../../src/graph -I../../.. -I/usr/include/python2.7 -pthread -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -DNDEBUG -fopenmp -O3 -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wall -Wextra -ftemplate-backtrace-limit=0 -O2 -pipe -march=native -finline-functions -floop-nest-optimize -flto=4 -c graph_fruchterman_reingold.cc -fPIC -DPIC -o .libs/graph_fruchterman_reingold.o >/bin/sh ../../../libtool --tag=CXX --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -I../../../src/boost-workaround -DHAVE_CONFIG_H -I../../../src/graph -I../../.. -I/usr/include/python2.7 -pthread -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -DNDEBUG -fopenmp -O3 -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wall -Wextra -ftemplate-backtrace-limit=0 -O2 -pipe -march=native -finline-functions -floop-nest-optimize -flto=4 -c -o graph_sfdp.lo graph_sfdp.cc >libtool: compile: x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -I../../../src/boost-workaround -DHAVE_CONFIG_H -I../../../src/graph -I../../.. -I/usr/include/python2.7 -pthread -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/include -DNDEBUG -fopenmp -O3 -fvisibility=default -fvisibility-inlines-hidden -Wno-deprecated -Wall -Wextra -ftemplate-backtrace-limit=0 -O2 -pipe -march=native -finline-functions -floop-nest-optimize -flto=4 -c graph_sfdp.cc -fPIC -DPIC -o .libs/graph_sfdp.o >graph_sfdp.cc: In function âvoid sfdp_layout(graph_tool::GraphInterface&, boost::any, boost::any, boost::any, boost::any, boost::python::api::object, double, double, double, size_t, double, size_t, bool, bool, rng_t&)â: >graph_sfdp.cc:55:68: error: call of overloaded âany_cast<group_map_t>(boost::python::extract<boost::any>)â is ambiguous > 55 | any_cast<group_map_t>(python::extract<any>(spring_parms[6])); > | ^ >In file included from /usr/include/boost/property_map/dynamic_property_map.hpp:24, > from ../../../src/graph/graph_properties.hh:34, > from ../../../src/graph/graph.hh:35, > from ../../../src/graph/graph_filtering.hh:21, > from graph_sfdp.cc:18: >/usr/include/boost/any.hpp:295:22: note: candidate: âValueType boost::any_cast(const boost::any&) [with ValueType = boost::checked_vector_property_map<int, boost::typed_identity_property_map<long unsigned int> >]â > 295 | inline ValueType any_cast(const any & operand) > | ^~~~~~~~ >/usr/include/boost/any.hpp:303:22: note: candidate: âValueType boost::any_cast(boost::any&&) [with ValueType = boost::checked_vector_property_map<int, boost::typed_identity_property_map<long unsigned int> >]â > 303 | inline ValueType any_cast(any&& operand) > | ^~~~~~~~ >make[4]: *** [Makefile:530: graph_sfdp.lo] Error 1 >make[4]: Leaving directory '/var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python2_7/src/graph/layout' >make[3]: *** [Makefile:752: all-recursive] Error 1 >make[3]: Leaving directory '/var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python2_7/src/graph' >make[2]: *** [Makefile:422: all-recursive] Error 1 >make[2]: Leaving directory '/var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python2_7/src' >make[1]: *** [Makefile:594: all-recursive] Error 1 >make[1]: Leaving directory '/var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python2_7' >make: *** [Makefile:481: all] Error 2 > * ERROR: dev-python/graph-tool-2.27::gentoo failed (compile phase): > * emake failed > * > * If you need support, post the output of `emerge --info '=dev-python/graph-tool-2.27::gentoo'`, > * the complete build log and the output of `emerge -pqv '=dev-python/graph-tool-2.27::gentoo'`. > * The complete build log is located at '/var/gentoo/logs/build/dev-python/graph-tool-2.27:20190924-175026.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/dev-python/graph-tool-2.27/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/dev-python/graph-tool-2.27/temp/environment'. > * Working directory: '/var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27-python2_7' > * S: '/var/tmp/portage/dev-python/graph-tool-2.27/work/graph-tool-2.27'
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