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Gentoo's Bugzilla – Attachment 590596 Details for
Bug 695380
sci-biology/emboss-6.6.0-r1 : ajsql.c:3033:12: error: two or more data types in declaration specifiers
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sci-biology:emboss-6.6.0-r1:20190921-205800.log
sci-biology:emboss-6.6.0-r1:20190921-205800.log (text/plain), 89.94 KB, created by
Toralf Förster
on 2019-09-22 04:13:15 UTC
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hide
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Description:
sci-biology:emboss-6.6.0-r1:20190921-205800.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2019-09-22 04:13:15 UTC
Size:
89.94 KB
patch
obsolete
> * Package: sci-biology/emboss-6.6.0-r1 > * Repository: gentoo > * Maintainer: sci-biology@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux mysql userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking EMBOSS-6.6.0.tar.gz to /var/tmp/portage/sci-biology/emboss-6.6.0-r1/work >>>> Source unpacked in /var/tmp/portage/sci-biology/emboss-6.6.0-r1/work >>>> Preparing source in /var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0 ... > * Applying emboss-6.6.0_fix-build-system.patch ... > [ ok ] > * Applying emboss-6.6.0_FORTIFY_SOURCE-fix.patch ... > [ ok ] > * Applying emboss-6.6.0_plplot-declarations.patch ... > [ ok ] > * Applying emboss-6.6.0_qa-implicit-declarations.patch ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0' ... > * Running libtoolize --install --copy --force --automake ... > [ ok ] > * Running aclocal -I m4 ... > [ ok ] > * Running autoconf --force ... > [ ok ] > * Running autoheader ... > [ ok ] > * Running automake --add-missing --copy --force-missing ... > [ ok ] > * Running elibtoolize in: EMBOSS-6.6.0/ > * Applying portage/1.2.0 patch ... > * Applying sed/1.5.6 patch ... > * Applying as-needed/2.4.3 patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0 ... > * econf: updating EMBOSS-6.6.0/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating EMBOSS-6.6.0/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/emboss-6.6.0-r1 --htmldir=/usr/share/doc/emboss-6.6.0-r1/html --libdir=/usr/lib64 --enable-shared --disable-static --without-x --without-pngdriver --without-hpdf --with-mysql=/usr/bin/mysql_config --without-postgresql --enable-large --without-java --enable-systemlibs >checking for gawk... gawk >checking for x86_64-pc-linux-gnu-icc... no >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking for x86_64-pc-linux-gnu-icpc... no >checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for a BSD-compatible install... /usr/lib/portage/python3.6/ebuild-helpers/xattr/install -c >checking whether ln -s works... yes >checking whether make sets $(MAKE)... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking whether build environment is sane... yes >checking whether make supports the include directive... yes (GNU style) >checking whether make supports nested variables... yes >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking dependency style of x86_64-pc-linux-gnu-g++... none >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B >checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm >checking the maximum length of command line arguments... 1572864 >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for a working dd... /bin/dd >checking how to truncate binary pipes... /bin/dd bs=4096 count=1 >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for X... disabled >checking for dirent.h that defines DIR... yes >checking for library containing opendir... none required >checking for ANSI C header files... (cached) yes >checking for unistd.h... (cached) yes >checking TargetConfig.h usability... no >checking TargetConfig.h presence... no >checking for TargetConfig.h... no >checking whether byte ordering is bigendian... no >checking for an ANSI C-conforming const... yes >checking for inline... inline >checking for pid_t... yes >checking for size_t... yes >checking whether struct tm is in sys/time.h or time.h... time.h >checking whether getpgrp requires zero arguments... yes >checking for strftime... yes >checking vfork.h usability... no >checking vfork.h presence... no >checking for vfork.h... no >checking for fork... yes >checking for vfork... yes >checking for working fork... yes >checking for working vfork... (cached) yes >checking for vprintf... yes >checking for _doprnt... no >checking for memmove... yes >checking for socket in -lc... yes >checking for main in -lm... yes >checking if docroot is given... no >checking if gcc profiling is selected... no >checking if gcov coverage is selected... no >configure: checking for EMBOSS pre-indexed databases >checking for ./emboss/index/edam.xac... yes >checking for Java JNI... no >checking for Java JNI OS... no >checking for authorisation type... no >checking for threading type... no >checking whether to look for pdf support... no >checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config >checking pkg-config is at least version 0.9.0... yes >checking whether to look for axis2c support... no >checking if png driver is wanted... no >checking for mysql_config... /usr/bin/mysql_config >checking for MySQL libraries... yes >checking for large file support... yes >checking for PCRE... yes >checking for EXPAT... yes >checking for ZLIB... yes >checking for PLPLOT... no >checking for PLPLOT... yes >checking for purify... no >checking for cygwin... no >checking for savestats... no >checking that generated files are newer than configure... done >configure: creating ./config.status >config.status: creating Makefile >config.status: creating ajax/Makefile >config.status: creating ajax/acd/Makefile >config.status: creating ajax/ajaxdb/Makefile >config.status: creating ajax/core/Makefile >config.status: creating ajax/ensembl/Makefile >config.status: creating ajax/expat/Makefile >config.status: creating ajax/graphics/Makefile >config.status: creating ajax/pcre/Makefile >config.status: creating ajax/zlib/Makefile >config.status: creating doc/Makefile >config.status: creating doc/manuals/Makefile >config.status: creating doc/programs/Makefile >config.status: creating doc/programs/html/Makefile >config.status: creating doc/programs/text/Makefile >config.status: creating doc/tutorials/Makefile >config.status: creating emboss/Makefile >config.status: creating emboss/acd/Makefile >config.status: creating emboss/data/AAINDEX/Makefile >config.status: creating emboss/data/CODONS/Makefile >config.status: creating emboss/data/JASPAR_CNE/Makefile >config.status: creating emboss/data/JASPAR_CORE/Makefile >config.status: creating emboss/data/JASPAR_FAM/Makefile >config.status: creating emboss/data/JASPAR_PBM/Makefile >config.status: creating emboss/data/JASPAR_PBM_HLH/Makefile >config.status: creating emboss/data/JASPAR_PBM_HOMEO/Makefile >config.status: creating emboss/data/JASPAR_PHYLOFACTS/Makefile >config.status: creating emboss/data/JASPAR_POLII/Makefile >config.status: creating emboss/data/JASPAR_SPLICE/Makefile >config.status: creating emboss/data/Makefile >config.status: creating emboss/data/OBO/Makefile >config.status: creating emboss/data/PRINTS/Makefile >config.status: creating emboss/data/PROSITE/Makefile >config.status: creating emboss/data/REBASE/Makefile >config.status: creating emboss/data/TAXONOMY/Makefile >config.status: creating emboss/index/Makefile >config.status: creating jemboss/Makefile >config.status: creating jemboss/runJemboss.sh >config.status: creating jemboss/images/Makefile >config.status: creating jemboss/lib/Makefile >config.status: creating jemboss/lib/axis/Makefile >config.status: creating jemboss/resources/Makefile >config.status: creating jemboss/utils/Makefile >config.status: creating nucleus/Makefile >config.status: creating plplot/Makefile >config.status: creating plplot/lib/Makefile >config.status: creating test/Makefile >config.status: creating test/data/Makefile >config.status: creating test/embl/Makefile >config.status: creating test/genbank/Makefile >config.status: creating test/pir/Makefile >config.status: creating test/swiss/Makefile >config.status: creating test/swnew/Makefile >config.status: creating test/testdb/Makefile >config.status: creating ajax/core/config.h >config.status: executing depfiles commands >config.status: executing libtool commands >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0 ... >make -j1 >Making all in ajax >make[1]: Entering directory '/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/ajax' >Making all in core >make[2]: Entering directory '/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/ajax/core' >make all-am >make[3]: Entering directory '/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/ajax/core' >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajalign.lo `test -f 'ajalign.c' || echo './'`ajalign.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajalign.c -fPIC -DPIC -o .libs/libajax_la-ajalign.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajarr.lo `test -f 'ajarr.c' || echo './'`ajarr.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajarr.c -fPIC -DPIC -o .libs/libajax_la-ajarr.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajassem.lo `test -f 'ajassem.c' || echo './'`ajassem.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajassem.c -fPIC -DPIC -o .libs/libajax_la-ajassem.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajassemread.lo `test -f 'ajassemread.c' || echo './'`ajassemread.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajassemread.c -fPIC -DPIC -o .libs/libajax_la-ajassemread.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajassemwrite.lo `test -f 'ajassemwrite.c' || echo './'`ajassemwrite.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajassemwrite.c -fPIC -DPIC -o .libs/libajax_la-ajassemwrite.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajassert.lo `test -f 'ajassert.c' || echo './'`ajassert.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajassert.c -fPIC -DPIC -o .libs/libajax_la-ajassert.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajbamindex.lo `test -f 'ajbamindex.c' || echo './'`ajbamindex.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajbamindex.c -fPIC -DPIC -o .libs/libajax_la-ajbamindex.o >ajbamindex.c: In function âbamIndexLoadCoreâ: >ajbamindex.c:720:5: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > 720 | fread(magic, 1, 4, fp); > | ^~~~~~~~~~~~~~~~~~~~~~ >ajbamindex.c:731:5: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > 731 | fread(&idx->n, 4, 1, fp); > | ^~~~~~~~~~~~~~~~~~~~~~~~ >ajbamindex.c:747:2: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > 747 | fread(&n_bin, 4, 1, fp); > | ^~~~~~~~~~~~~~~~~~~~~~~ >ajbamindex.c:756:6: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > 756 | fread(&binid, 4, 1, fp); > | ^~~~~~~~~~~~~~~~~~~~~~~ >ajbamindex.c:765:6: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > 765 | fread(&binlist->n, 4, 1, fp); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >ajbamindex.c:773:6: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > 773 | fread(binlist->list, 16, binlist->n, fp); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >ajbamindex.c:799:2: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > 799 | fread(&index2->n, 4, 1, fp); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ >ajbamindex.c:807:2: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > 807 | fread(index2->offset, index2->n, 8, fp); > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajbase.lo `test -f 'ajbase.c' || echo './'`ajbase.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajbase.c -fPIC -DPIC -o .libs/libajax_la-ajbase.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajcall.lo `test -f 'ajcall.c' || echo './'`ajcall.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajcall.c -fPIC -DPIC -o .libs/libajax_la-ajcall.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajcigar.lo `test -f 'ajcigar.c' || echo './'`ajcigar.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajcigar.c -fPIC -DPIC -o .libs/libajax_la-ajcigar.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajcod.lo `test -f 'ajcod.c' || echo './'`ajcod.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajcod.c -fPIC -DPIC -o .libs/libajax_la-ajcod.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajdan.lo `test -f 'ajdan.c' || echo './'`ajdan.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajdan.c -fPIC -DPIC -o .libs/libajax_la-ajdan.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajdmx.lo `test -f 'ajdmx.c' || echo './'`ajdmx.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajdmx.c -fPIC -DPIC -o .libs/libajax_la-ajdmx.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajdom.lo `test -f 'ajdom.c' || echo './'`ajdom.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajdom.c -fPIC -DPIC -o .libs/libajax_la-ajdom.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajdomain.lo `test -f 'ajdomain.c' || echo './'`ajdomain.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajdomain.c -fPIC -DPIC -o .libs/libajax_la-ajdomain.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajexcept.lo `test -f 'ajexcept.c' || echo './'`ajexcept.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajexcept.c -fPIC -DPIC -o .libs/libajax_la-ajexcept.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajfeat.lo `test -f 'ajfeat.c' || echo './'`ajfeat.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajfeat.c -fPIC -DPIC -o .libs/libajax_la-ajfeat.o >ajfeat.c: In function âfeatFeatTypeâ: >ajfeat.c:2114:11: warning: implicit declaration of function âisspaceâ [-Wimplicit-function-declaration] > 2114 | while(isspace((ajint)*cp)) > | ^~~~~~~ >ajfeat.c: In function âfeatTagNameâ: >ajfeat.c:4352:11: warning: implicit declaration of function âisalphaâ [-Wimplicit-function-declaration] > 4352 | while(isalpha((ajint)*cp)) > | ^~~~~~~ >ajfeat.c: In function âfeatTagSpecialAllCitationâ: >ajfeat.c:6084:10: warning: implicit declaration of function âisdigitâ [-Wimplicit-function-declaration] > 6084 | if(!isdigit((ajint)*cp)) > | ^~~~~~~ >ajfeat.c: In function âfeatTagSpecialAllConsspliceâ: >ajfeat.c:6291:9: warning: implicit declaration of function âislowerâ [-Wimplicit-function-declaration] > 6291 | if(islower((ajint)*cp++)) > | ^~~~~~~ >ajfeat.c: In function âfeatTagSpecialAllProteinidâ: >ajfeat.c:7140:34: warning: implicit declaration of function âisupperâ [-Wimplicit-function-declaration] > 7140 | else if(!isalpha(icp) || !isupper(icp)) > | ^~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajfeatread.lo `test -f 'ajfeatread.c' || echo './'`ajfeatread.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajfeatread.c -fPIC -DPIC -o .libs/libajax_la-ajfeatread.o >ajfeatread.c: In function âfeatGff3ProcessTagvalâ: >ajfeatread.c:3139:16: warning: implicit declaration of function âisupperâ [-Wimplicit-function-declaration] > 3139 | if(isupper((int)cp)) > | ^~~~~~~ >ajfeatread.c: In function âfeatEmblOperOutâ: >ajfeatread.c:4099:9: warning: implicit declaration of function âisalphaâ [-Wimplicit-function-declaration] > 4099 | if(!isalpha((ajint)*cp)) return ajFalse; /* starts with location */ > | ^~~~~~~ >ajfeatread.c:4100:9: warning: implicit declaration of function âislowerâ [-Wimplicit-function-declaration] > 4100 | if(!islower((ajint)*cp)) return ajFalse; /* starts with location */ > | ^~~~~~~ >ajfeatread.c: In function âfeatEmblLocâ: >ajfeatread.c:4371:21: warning: implicit declaration of function âisdigitâ [-Wimplicit-function-declaration] > 4371 | if(!isdigit((ajint) *cp)) > | ^~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajfeatwrite.lo `test -f 'ajfeatwrite.c' || echo './'`ajfeatwrite.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajfeatwrite.c -fPIC -DPIC -o .libs/libajax_la-ajfeatwrite.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajfile.lo `test -f 'ajfile.c' || echo './'`ajfile.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajfile.c -fPIC -DPIC -o .libs/libajax_la-ajfile.o >ajfile.c: In function âajFileNewListinPathWildâ: >ajfile.c:1527:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > 1527 | !readdir_r(dp,(struct dirent *)buf,&de) > | ^ >In file included from /usr/include/features.h:450, > from /usr/include/sys/types.h:25, > from ajarch.h:33, > from ajdefine.h:48, > from ajlib.h:34, > from ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > 189 | extern int __REDIRECT (readdir_r, > | ^~~~~~~~~~ >ajfile.c: In function âajFileNewListinPathWildExcludeâ: >ajfile.c:1629:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > 1629 | !readdir_r(dp,(struct dirent *)buf,&de) > | ^ >In file included from /usr/include/features.h:450, > from /usr/include/sys/types.h:25, > from ajarch.h:33, > from ajdefine.h:48, > from ajlib.h:34, > from ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > 189 | extern int __REDIRECT (readdir_r, > | ^~~~~~~~~~ >ajfile.c: In function âajFilebuffNewPathWildâ: >ajfile.c:3222:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > 3222 | !readdir_r(dp,(struct dirent *)buf,&de) > | ^ >In file included from /usr/include/features.h:450, > from /usr/include/sys/types.h:25, > from ajarch.h:33, > from ajdefine.h:48, > from ajlib.h:34, > from ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > 189 | extern int __REDIRECT (readdir_r, > | ^~~~~~~~~~ >ajfile.c: In function âajFilebuffNewPathWildExcludeâ: >ajfile.c:3325:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > 3325 | !readdir_r(dp,(struct dirent *)buf,&de) > | ^ >In file included from /usr/include/features.h:450, > from /usr/include/sys/types.h:25, > from ajarch.h:33, > from ajdefine.h:48, > from ajlib.h:34, > from ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > 189 | extern int __REDIRECT (readdir_r, > | ^~~~~~~~~~ >ajfile.c: In function âajFilewildnameExistsDirâ: >ajfile.c:7138:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > 7138 | !readdir_r(dp,(struct dirent *)buf,&de) > | ^ >In file included from /usr/include/features.h:450, > from /usr/include/sys/types.h:25, > from ajarch.h:33, > from ajdefine.h:48, > from ajlib.h:34, > from ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > 189 | extern int __REDIRECT (readdir_r, > | ^~~~~~~~~~ >ajfile.c: In function âajDirnamePrintRecursiveIgnoreâ: >ajfile.c:7475:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > 7475 | !readdir_r(indir,(struct dirent *)buf,&dp) > | ^ >In file included from /usr/include/features.h:450, > from /usr/include/sys/types.h:25, > from ajarch.h:33, > from ajdefine.h:48, > from ajlib.h:34, > from ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > 189 | extern int __REDIRECT (readdir_r, > | ^~~~~~~~~~ >ajfile.c: In function âajFilelistAddDirectoryâ: >ajfile.c:7703:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > 7703 | !readdir_r(indir,(struct dirent *)buf,&dp) > | ^ >In file included from /usr/include/features.h:450, > from /usr/include/sys/types.h:25, > from ajarch.h:33, > from ajdefine.h:48, > from ajlib.h:34, > from ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > 189 | extern int __REDIRECT (readdir_r, > | ^~~~~~~~~~ >ajfile.c: In function âajFilelistAddPathâ: >ajfile.c:7876:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > 7876 | !readdir_r(indir,(struct dirent *)buf,&dp) > | ^ >In file included from /usr/include/features.h:450, > from /usr/include/sys/types.h:25, > from ajarch.h:33, > from ajdefine.h:48, > from ajlib.h:34, > from ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > 189 | extern int __REDIRECT (readdir_r, > | ^~~~~~~~~~ >ajfile.c: In function âajFilelistAddPathDirâ: >ajfile.c:7997:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > 7997 | !readdir_r(indir,(struct dirent *)buf,&dp) > | ^ >In file included from /usr/include/features.h:450, > from /usr/include/sys/types.h:25, > from ajarch.h:33, > from ajdefine.h:48, > from ajlib.h:34, > from ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > 189 | extern int __REDIRECT (readdir_r, > | ^~~~~~~~~~ >ajfile.c: In function âajFilelistAddPathWildâ: >ajfile.c:8106:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > 8106 | !readdir_r(indir,(struct dirent *)buf,&dp) > | ^ >In file included from /usr/include/features.h:450, > from /usr/include/sys/types.h:25, > from ajarch.h:33, > from ajdefine.h:48, > from ajlib.h:34, > from ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > 189 | extern int __REDIRECT (readdir_r, > | ^~~~~~~~~~ >ajfile.c: In function âajFilelistAddPathWildDirâ: >ajfile.c:8217:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > 8217 | !readdir_r(indir,(struct dirent *)buf,&dp) > | ^ >In file included from /usr/include/features.h:450, > from /usr/include/sys/types.h:25, > from ajarch.h:33, > from ajdefine.h:48, > from ajlib.h:34, > from ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > 189 | extern int __REDIRECT (readdir_r, > | ^~~~~~~~~~ >ajfile.c: In function âajFilelistAddPathWildRecursiveIgnoreâ: >ajfile.c:8423:9: warning: âreaddir_râ is deprecated [-Wdeprecated-declarations] > 8423 | !readdir_r(indir,(struct dirent *)buf,&dp) > | ^ >In file included from /usr/include/features.h:450, > from /usr/include/sys/types.h:25, > from ajarch.h:33, > from ajdefine.h:48, > from ajlib.h:34, > from ajfile.c:33: >/usr/include/dirent.h:189:12: note: declared here > 189 | extern int __REDIRECT (readdir_r, > | ^~~~~~~~~~ >ajfile.c: In function âajFileSetEofâ: >ajfile.c:2408:5: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > 2408 | fread(&c, 1, 1, file->fp); > | ^~~~~~~~~~~~~~~~~~~~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajfiledata.lo `test -f 'ajfiledata.c' || echo './'`ajfiledata.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajfiledata.c -fPIC -DPIC -o .libs/libajax_la-ajfiledata.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajfileio.lo `test -f 'ajfileio.c' || echo './'`ajfileio.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajfileio.c -fPIC -DPIC -o .libs/libajax_la-ajfileio.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajfmt.lo `test -f 'ajfmt.c' || echo './'`ajfmt.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajfmt.c -fPIC -DPIC -o .libs/libajax_la-ajfmt.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajftp.lo `test -f 'ajftp.c' || echo './'`ajftp.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajftp.c -fPIC -DPIC -o .libs/libajax_la-ajftp.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajhttp.lo `test -f 'ajhttp.c' || echo './'`ajhttp.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajhttp.c -fPIC -DPIC -o .libs/libajax_la-ajhttp.o >ajhttp.c: In function âajHttpUrlrefParseCâ: >ajhttp.c:719:6: warning: implicit declaration of function âisspaceâ [-Wimplicit-function-declaration] > 719 | if (isspace((int) *p)) > | ^~~~~~~ >ajhttp.c: In function âajHttpUrlrefSplitPortâ: >ajhttp.c:813:9: warning: implicit declaration of function âisdigitâ [-Wimplicit-function-declaration] > 813 | if(!isdigit((int) *p)) > | ^~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajindex.lo `test -f 'ajindex.c' || echo './'`ajindex.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajindex.c -fPIC -DPIC -o .libs/libajax_la-ajindex.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajjava.lo `test -f 'ajjava.c' || echo './'`ajjava.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajjava.c -fPIC -DPIC -o .libs/libajax_la-ajjava.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajlist.lo `test -f 'ajlist.c' || echo './'`ajlist.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajlist.c -fPIC -DPIC -o .libs/libajax_la-ajlist.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajmath.lo `test -f 'ajmath.c' || echo './'`ajmath.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajmath.c -fPIC -DPIC -o .libs/libajax_la-ajmath.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajmatrices.lo `test -f 'ajmatrices.c' || echo './'`ajmatrices.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajmatrices.c -fPIC -DPIC -o .libs/libajax_la-ajmatrices.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajmem.lo `test -f 'ajmem.c' || echo './'`ajmem.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajmem.c -fPIC -DPIC -o .libs/libajax_la-ajmem.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajmess.lo `test -f 'ajmess.c' || echo './'`ajmess.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajmess.c -fPIC -DPIC -o .libs/libajax_la-ajmess.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajnam.lo `test -f 'ajnam.c' || echo './'`ajnam.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajnam.c -fPIC -DPIC -o .libs/libajax_la-ajnam.o >ajnam.c: In function âajNamIsDbnameâ: >ajnam.c:4624:10: warning: implicit declaration of function âisalphaâ [-Wimplicit-function-declaration] > 4624 | if (!isalpha((int)*cp++)) > | ^~~~~~~ >ajnam.c:4632:6: warning: implicit declaration of function âisalnumâ [-Wimplicit-function-declaration] > 4632 | if(!isalnum((int)*cp) && (*cp != '_')) > | ^~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajnexus.lo `test -f 'ajnexus.c' || echo './'`ajnexus.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajnexus.c -fPIC -DPIC -o .libs/libajax_la-ajnexus.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajobo.lo `test -f 'ajobo.c' || echo './'`ajobo.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajobo.c -fPIC -DPIC -o .libs/libajax_la-ajobo.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajoboread.lo `test -f 'ajoboread.c' || echo './'`ajoboread.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajoboread.c -fPIC -DPIC -o .libs/libajax_la-ajoboread.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajobowrite.lo `test -f 'ajobowrite.c' || echo './'`ajobowrite.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajobowrite.c -fPIC -DPIC -o .libs/libajax_la-ajobowrite.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajpat.lo `test -f 'ajpat.c' || echo './'`ajpat.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajpat.c -fPIC -DPIC -o .libs/libajax_la-ajpat.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajpdb.lo `test -f 'ajpdb.c' || echo './'`ajpdb.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajpdb.c -fPIC -DPIC -o .libs/libajax_la-ajpdb.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajpdbio.lo `test -f 'ajpdbio.c' || echo './'`ajpdbio.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajpdbio.c -fPIC -DPIC -o .libs/libajax_la-ajpdbio.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajphylo.lo `test -f 'ajphylo.c' || echo './'`ajphylo.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajphylo.c -fPIC -DPIC -o .libs/libajax_la-ajphylo.o >ajphylo.c: In function âajPhyloStateReadâ: >ajphylo.c:1694:14: warning: implicit declaration of function âisspaceâ [-Wimplicit-function-declaration] > 1694 | if(*cp && !isspace((int)*cp)) > | ^~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajquery.lo `test -f 'ajquery.c' || echo './'`ajquery.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajquery.c -fPIC -DPIC -o .libs/libajax_la-ajquery.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajrange.lo `test -f 'ajrange.c' || echo './'`ajrange.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajrange.c -fPIC -DPIC -o .libs/libajax_la-ajrange.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajreg.lo `test -f 'ajreg.c' || echo './'`ajreg.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajreg.c -fPIC -DPIC -o .libs/libajax_la-ajreg.o >ajreg.c: In function âajRegCompCâ: >ajreg.c:95:15: warning: assignment to âstruct real_pcre *â from incompatible pointer type âpcre *â {aka âstruct real_pcre8_or_16 *â} [-Wincompatible-pointer-types] > 95 | ret->pcre = pcre_compile(rexp, options, &errptr, &errpos, tableptr); > | ^ >ajreg.c: In function âajRegCompCaseCâ: >ajreg.c:158:15: warning: assignment to âstruct real_pcre *â from incompatible pointer type âpcre *â {aka âstruct real_pcre8_or_16 *â} [-Wincompatible-pointer-types] > 158 | ret->pcre = pcre_compile(rexp, options, &errptr, &errpos, tableptr); > | ^ >ajreg.c: In function âajRegExecâ: >ajreg.c:208:28: warning: passing argument 1 of âpcre_execâ from incompatible pointer type [-Wincompatible-pointer-types] > 208 | status = pcre_exec(prog->pcre, prog->extra, ajStrGetPtr(str), > | ~~~~^~~~~~ > | | > | struct real_pcre * >In file included from ajreg.h:42, > from ajreg.c:34: >/usr/include/pcre.h:573:30: note: expected âconst pcre *â {aka âconst struct real_pcre8_or_16 *â} but argument is of type âstruct real_pcre *â > 573 | PCRE_EXP_DECL int pcre_exec(const pcre *, const pcre_extra *, PCRE_SPTR, > | ^~~~~~~~~~~~ >ajreg.c: In function âajRegExecCâ: >ajreg.c:259:28: warning: passing argument 1 of âpcre_execâ from incompatible pointer type [-Wincompatible-pointer-types] > 259 | status = pcre_exec(prog->pcre, prog->extra, str, strlen(str), > | ~~~~^~~~~~ > | | > | struct real_pcre * >In file included from ajreg.h:42, > from ajreg.c:34: >/usr/include/pcre.h:573:30: note: expected âconst pcre *â {aka âconst struct real_pcre8_or_16 *â} but argument is of type âstruct real_pcre *â > 573 | PCRE_EXP_DECL int pcre_exec(const pcre *, const pcre_extra *, PCRE_SPTR, > | ^~~~~~~~~~~~ >ajreg.c: In function âajRegExecallâ: >ajreg.c:313:39: warning: passing argument 1 of âpcre_dfa_execâ from incompatible pointer type [-Wincompatible-pointer-types] > 313 | prog->matches = pcre_dfa_exec(prog->pcre, prog->extra, > | ~~~~^~~~~~ > | | > | struct real_pcre * >In file included from ajreg.h:42, > from ajreg.c:34: >/usr/include/pcre.h:567:34: note: expected âconst pcre *â {aka âconst struct real_pcre8_or_16 *â} but argument is of type âstruct real_pcre *â > 567 | PCRE_EXP_DECL int pcre_dfa_exec(const pcre *, const pcre_extra *, > | ^~~~~~~~~~~~ >ajreg.c: In function âajRegExecallCâ: >ajreg.c:371:39: warning: passing argument 1 of âpcre_dfa_execâ from incompatible pointer type [-Wincompatible-pointer-types] > 371 | prog->matches = pcre_dfa_exec(prog->pcre, prog->extra, > | ~~~~^~~~~~ > | | > | struct real_pcre * >In file included from ajreg.h:42, > from ajreg.c:34: >/usr/include/pcre.h:567:34: note: expected âconst pcre *â {aka âconst struct real_pcre8_or_16 *â} but argument is of type âstruct real_pcre *â > 567 | PCRE_EXP_DECL int pcre_dfa_exec(const pcre *, const pcre_extra *, > | ^~~~~~~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajreport.lo `test -f 'ajreport.c' || echo './'`ajreport.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajreport.c -fPIC -DPIC -o .libs/libajax_la-ajreport.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajrefseq.lo `test -f 'ajrefseq.c' || echo './'`ajrefseq.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajrefseq.c -fPIC -DPIC -o .libs/libajax_la-ajrefseq.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajrefseqread.lo `test -f 'ajrefseqread.c' || echo './'`ajrefseqread.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajrefseqread.c -fPIC -DPIC -o .libs/libajax_la-ajrefseqread.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajrefseqwrite.lo `test -f 'ajrefseqwrite.c' || echo './'`ajrefseqwrite.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajrefseqwrite.c -fPIC -DPIC -o .libs/libajax_la-ajrefseqwrite.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajresource.lo `test -f 'ajresource.c' || echo './'`ajresource.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajresource.c -fPIC -DPIC -o .libs/libajax_la-ajresource.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajresourceread.lo `test -f 'ajresourceread.c' || echo './'`ajresourceread.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajresourceread.c -fPIC -DPIC -o .libs/libajax_la-ajresourceread.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajresourcewrite.lo `test -f 'ajresourcewrite.c' || echo './'`ajresourcewrite.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajresourcewrite.c -fPIC -DPIC -o .libs/libajax_la-ajresourcewrite.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajseq.lo `test -f 'ajseq.c' || echo './'`ajseq.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajseq.c -fPIC -DPIC -o .libs/libajax_la-ajseq.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajseqabi.lo `test -f 'ajseqabi.c' || echo './'`ajseqabi.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajseqabi.c -fPIC -DPIC -o .libs/libajax_la-ajseqabi.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajseqbam.lo `test -f 'ajseqbam.c' || echo './'`ajseqbam.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajseqbam.c -fPIC -DPIC -o .libs/libajax_la-ajseqbam.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajseqread.lo `test -f 'ajseqread.c' || echo './'`ajseqread.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajseqread.c -fPIC -DPIC -o .libs/libajax_la-ajseqread.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajseqtype.lo `test -f 'ajseqtype.c' || echo './'`ajseqtype.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajseqtype.c -fPIC -DPIC -o .libs/libajax_la-ajseqtype.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajseqwrite.lo `test -f 'ajseqwrite.c' || echo './'`ajseqwrite.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajseqwrite.c -fPIC -DPIC -o .libs/libajax_la-ajseqwrite.o >ajseqwrite.c: In function âajSeqoutGetCheckgcgâ: >ajseqwrite.c:10031:19: warning: implicit declaration of function âtoupperâ [-Wimplicit-function-declaration] >10031 | check += count * toupper((ajint) cp[i]); > | ^~~~~~~ >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajsort.lo `test -f 'ajsort.c' || echo './'`ajsort.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajsort.c -fPIC -DPIC -o .libs/libajax_la-ajsort.o >/bin/sh ../../libtool --tag=CC --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM="\"Linux\"" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c -o libajax_la-ajsql.lo `test -f 'ajsql.c' || echo './'`ajsql.c >libtool: compile: x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -DNO_AUTH -I/usr/include/mysql -DAJAX_FIXED_ROOT=\"/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/emboss\" -DAJAX_SYSTEM=\"Linux\" -DPREFIX=\"/usr\" -DAJ_LinuxLF -D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_FILE_OFFSET_BITS=64 -O2 -pipe -march=native -O2 -c ajsql.c -fPIC -DPIC -o .libs/libajax_la-ajsql.o >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c: In function âajSqlcolumnToBoolâ: >ajsql.c:3033:12: error: two or more data types in declaration specifiers > 3033 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3033:17: error: expected identifier or â(â before â=â token > 3033 | AjBool bool = ajFalse; > | ^ >ajsql.c:3048:10: error: expected identifier or â(â before â=â token > 3048 | bool = ajSqlcolumnToStr(sqlr, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3050:8: error: expected expression before â_Boolâ > 3050 | if(bool) > | ^~~~ >ajsql.c:3055:12: error: expected expression before â_Boolâ > 3055 | return bool; > | ^~~~ >ajsql.c: In function âajSqlcolumnToDoubleâ: >ajsql.c:3077:12: error: two or more data types in declaration specifiers > 3077 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3077:17: error: expected identifier or â(â before â=â token > 3077 | AjBool bool = ajFalse; > | ^ >ajsql.c:3092:10: error: expected identifier or â(â before â=â token > 3092 | bool = ajSqlcolumnToStr(sqlr, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3094:8: error: expected expression before â_Boolâ > 3094 | if(bool) > | ^~~~ >ajsql.c:3099:12: error: expected expression before â_Boolâ > 3099 | return bool; > | ^~~~ >ajsql.c: In function âajSqlcolumnToFloatâ: >ajsql.c:3121:12: error: two or more data types in declaration specifiers > 3121 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3121:17: error: expected identifier or â(â before â=â token > 3121 | AjBool bool = ajFalse; > | ^ >ajsql.c:3136:10: error: expected identifier or â(â before â=â token > 3136 | bool = ajSqlcolumnToStr(sqlr, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3138:8: error: expected expression before â_Boolâ > 3138 | if(bool) > | ^~~~ >ajsql.c:3143:12: error: expected expression before â_Boolâ > 3143 | return bool; > | ^~~~ >ajsql.c: In function âajSqlcolumnToIntâ: >ajsql.c:3165:12: error: two or more data types in declaration specifiers > 3165 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3165:17: error: expected identifier or â(â before â=â token > 3165 | AjBool bool = ajFalse; > | ^ >ajsql.c:3180:10: error: expected identifier or â(â before â=â token > 3180 | bool = ajSqlcolumnToStr(sqlr, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3182:8: error: expected expression before â_Boolâ > 3182 | if(bool) > | ^~~~ >ajsql.c:3187:12: error: expected expression before â_Boolâ > 3187 | return bool; > | ^~~~ >ajsql.c: In function âajSqlcolumnToLongâ: >ajsql.c:3209:12: error: two or more data types in declaration specifiers > 3209 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3209:17: error: expected identifier or â(â before â=â token > 3209 | AjBool bool = ajFalse; > | ^ >ajsql.c:3224:10: error: expected identifier or â(â before â=â token > 3224 | bool = ajSqlcolumnToStr(sqlr, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3226:8: error: expected expression before â_Boolâ > 3226 | if(bool) > | ^~~~ >ajsql.c:3231:12: error: expected expression before â_Boolâ > 3231 | return bool; > | ^~~~ >ajsql.c: In function âajSqlcolumnToTimeâ: >ajsql.c:3303:12: error: two or more data types in declaration specifiers > 3303 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3303:17: error: expected identifier or â(â before â=â token > 3303 | AjBool bool = ajFalse; > | ^ >ajsql.c:3321:10: error: expected identifier or â(â before â=â token > 3321 | bool = ajSqlcolumnToStr(sqlr, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3323:8: error: expected expression before â_Boolâ > 3323 | if(bool) > | ^~~~ >ajsql.c:3328:12: error: expected expression before â_Boolâ > 3328 | return bool; > | ^~~~ >ajsql.c: In function âajSqlcolumnToUintâ: >ajsql.c:3350:12: error: two or more data types in declaration specifiers > 3350 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3350:17: error: expected identifier or â(â before â=â token > 3350 | AjBool bool = ajFalse; > | ^ >ajsql.c:3365:10: error: expected identifier or â(â before â=â token > 3365 | bool = ajSqlcolumnToStr(sqlr, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3367:8: error: expected expression before â_Boolâ > 3367 | if(bool) > | ^~~~ >ajsql.c:3372:12: error: expected expression before â_Boolâ > 3372 | return bool; > | ^~~~ >ajsql.c: In function âajSqlcolumnToUlongâ: >ajsql.c:3394:12: error: two or more data types in declaration specifiers > 3394 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3394:17: error: expected identifier or â(â before â=â token > 3394 | AjBool bool = ajFalse; > | ^ >ajsql.c:3409:10: error: expected identifier or â(â before â=â token > 3409 | bool = ajSqlcolumnToStr(sqlr, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3411:8: error: expected expression before â_Boolâ > 3411 | if(bool) > | ^~~~ >ajsql.c:3416:12: error: expected expression before â_Boolâ > 3416 | return bool; > | ^~~~ >ajsql.c: In function âajSqlcolumnNumberToBoolâ: >ajsql.c:3549:12: error: two or more data types in declaration specifiers > 3549 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3549:17: error: expected identifier or â(â before â=â token > 3549 | AjBool bool = ajFalse; > | ^ >ajsql.c:3564:10: error: expected identifier or â(â before â=â token > 3564 | bool = ajSqlcolumnNumberToStr(sqlr, column, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3566:8: error: expected expression before â_Boolâ > 3566 | if(bool) > | ^~~~ >ajsql.c:3571:12: error: expected expression before â_Boolâ > 3571 | return bool; > | ^~~~ >ajsql.c: In function âajSqlcolumnNumberToDoubleâ: >ajsql.c:3595:12: error: two or more data types in declaration specifiers > 3595 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3595:17: error: expected identifier or â(â before â=â token > 3595 | AjBool bool = ajFalse; > | ^ >ajsql.c:3610:10: error: expected identifier or â(â before â=â token > 3610 | bool = ajSqlcolumnNumberToStr(sqlr, column, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3612:8: error: expected expression before â_Boolâ > 3612 | if(bool) > | ^~~~ >ajsql.c:3617:12: error: expected expression before â_Boolâ > 3617 | return bool; > | ^~~~ >ajsql.c: In function âajSqlcolumnNumberToFloatâ: >ajsql.c:3641:12: error: two or more data types in declaration specifiers > 3641 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3641:17: error: expected identifier or â(â before â=â token > 3641 | AjBool bool = ajFalse; > | ^ >ajsql.c:3656:10: error: expected identifier or â(â before â=â token > 3656 | bool = ajSqlcolumnNumberToStr(sqlr, column, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3658:8: error: expected expression before â_Boolâ > 3658 | if(bool) > | ^~~~ >ajsql.c:3663:12: error: expected expression before â_Boolâ > 3663 | return bool; > | ^~~~ >ajsql.c: In function âajSqlcolumnNumberToIntâ: >ajsql.c:3687:12: error: two or more data types in declaration specifiers > 3687 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3687:17: error: expected identifier or â(â before â=â token > 3687 | AjBool bool = ajFalse; > | ^ >ajsql.c:3702:10: error: expected identifier or â(â before â=â token > 3702 | bool = ajSqlcolumnNumberToStr(sqlr, column, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3704:8: error: expected expression before â_Boolâ > 3704 | if(bool) > | ^~~~ >ajsql.c:3709:12: error: expected expression before â_Boolâ > 3709 | return bool; > | ^~~~ >ajsql.c: In function âajSqlcolumnNumberToLongâ: >ajsql.c:3733:12: error: two or more data types in declaration specifiers > 3733 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3733:17: error: expected identifier or â(â before â=â token > 3733 | AjBool bool = ajFalse; > | ^ >ajsql.c:3748:10: error: expected identifier or â(â before â=â token > 3748 | bool = ajSqlcolumnNumberToStr(sqlr, column, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3750:8: error: expected expression before â_Boolâ > 3750 | if(bool) > | ^~~~ >ajsql.c:3755:12: error: expected expression before â_Boolâ > 3755 | return bool; > | ^~~~ >ajsql.c: In function âajSqlcolumnNumberToTimeâ: >ajsql.c:3831:12: error: two or more data types in declaration specifiers > 3831 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3831:17: error: expected identifier or â(â before â=â token > 3831 | AjBool bool = ajFalse; > | ^ >ajsql.c:3849:10: error: expected identifier or â(â before â=â token > 3849 | bool = ajSqlcolumnNumberToStr(sqlr, column, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3851:8: error: expected expression before â_Boolâ > 3851 | if(bool) > | ^~~~ >ajsql.c:3856:12: error: expected expression before â_Boolâ > 3856 | return bool; > | ^~~~ >ajsql.c: In function âajSqlcolumnNumberToUintâ: >ajsql.c:3880:12: error: two or more data types in declaration specifiers > 3880 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3880:17: error: expected identifier or â(â before â=â token > 3880 | AjBool bool = ajFalse; > | ^ >ajsql.c:3895:10: error: expected identifier or â(â before â=â token > 3895 | bool = ajSqlcolumnNumberToStr(sqlr, column, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3897:8: error: expected expression before â_Boolâ > 3897 | if(bool) > | ^~~~ >ajsql.c:3902:12: error: expected expression before â_Boolâ > 3902 | return bool; > | ^~~~ >ajsql.c: In function âajSqlcolumnNumberToUlongâ: >ajsql.c:3926:12: error: two or more data types in declaration specifiers > 3926 | AjBool bool = ajFalse; > | ^~~~ >ajsql.c:3926:17: error: expected identifier or â(â before â=â token > 3926 | AjBool bool = ajFalse; > | ^ >ajsql.c:3941:10: error: expected identifier or â(â before â=â token > 3941 | bool = ajSqlcolumnNumberToStr(sqlr, column, &str); > | ^ >In file included from /usr/include/mysql/mysql.h:43, > from ajsql.c:45: >ajsql.c:3943:8: error: expected expression before â_Boolâ > 3943 | if(bool) > | ^~~~ >ajsql.c:3948:12: error: expected expression before â_Boolâ > 3948 | return bool; > | ^~~~ >make[3]: *** [Makefile:1335: libajax_la-ajsql.lo] Error 1 >make[3]: Leaving directory '/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/ajax/core' >make[2]: *** [Makefile:719: all] Error 2 >make[2]: Leaving directory '/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/ajax/core' >make[1]: *** [Makefile:410: all-recursive] Error 1 >make[1]: Leaving directory '/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0/ajax' >make: *** [Makefile:449: all-recursive] Error 1 > * ERROR: sci-biology/emboss-6.6.0-r1::gentoo failed (compile phase): > * emake failed > * > * If you need support, post the output of `emerge --info '=sci-biology/emboss-6.6.0-r1::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-biology/emboss-6.6.0-r1::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-biology:emboss-6.6.0-r1:20190921-205800.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/emboss-6.6.0-r1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-biology/emboss-6.6.0-r1/temp/environment'. > * Working directory: '/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0' > * S: '/var/tmp/portage/sci-biology/emboss-6.6.0-r1/work/EMBOSS-6.6.0'
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590592
|
590594
| 590596 |
590598
