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Gentoo's Bugzilla – Attachment 581382 Details for
Bug 688934
sci-mathematics/jags-4.2.0 : configure: error: You need to install the LAPACK library
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sci-mathematics:jags-4.2.0:20190629-135255.log
sci-mathematics:jags-4.2.0:20190629-135255.log (text/plain), 14.22 KB, created by
Toralf Förster
on 2019-06-29 14:42:31 UTC
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Description:
sci-mathematics:jags-4.2.0:20190629-135255.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2019-06-29 14:42:31 UTC
Size:
14.22 KB
patch
obsolete
> * Package: sci-mathematics/jags-4.2.0 > * Repository: gentoo > * Maintainer: sci-mathematics@gentoo.org > * USE: abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking JAGS-4.2.0.tar.gz to /var/tmp/portage/sci-mathematics/jags-4.2.0/work >>>> Source unpacked in /var/tmp/portage/sci-mathematics/jags-4.2.0/work >>>> Preparing source in /var/tmp/portage/sci-mathematics/jags-4.2.0/work/JAGS-4.2.0 ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-mathematics/jags-4.2.0/work/JAGS-4.2.0 ... >Package blas was not found in the pkg-config search path. >Perhaps you should add the directory containing `blas.pc' >to the PKG_CONFIG_PATH environment variable >Package 'blas', required by 'virtual:world', not found >Package lapack was not found in the pkg-config search path. >Perhaps you should add the directory containing `lapack.pc' >to the PKG_CONFIG_PATH environment variable >Package 'lapack', required by 'virtual:world', not found > * econf: updating JAGS-4.2.0/config.guess with /usr/share/gnuconfig/config.guess > * econf: updating JAGS-4.2.0/config.sub with /usr/share/gnuconfig/config.sub >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/jags-4.2.0 --htmldir=/usr/share/doc/jags-4.2.0/html --libdir=/usr/lib64 --with-blas= --with-lapack= >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking for a BSD-compatible install... /usr/lib/portage/python3.6/ebuild-helpers/xattr/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking whether make supports nested variables... yes >checking for cppunit-config... no >checking for Cppunit - version >= 1.12.1... no >checking how to print strings... printf >checking for style of include used by make... GNU >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes >checking dependency style of x86_64-pc-linux-gnu-gcc... none >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B >checking the name lister (/usr/bin/nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking whether the shell understands some XSI constructs... yes >checking whether the shell understands "+="... yes >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... mt >checking if mt is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for shl_load... no >checking for shl_load in -ldld... no >checking for dlopen... no >checking for dlopen in -ldl... yes >checking whether a program can dlopen itself... yes >checking whether a statically linked program can dlopen itself... no >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking which extension is used for runtime loadable modules... .so >checking which variable specifies run-time module search path... LD_LIBRARY_PATH >checking for the default library search path... /lib64 /usr/lib64 /lib /usr/lib /usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/32 /usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0 /usr/lib/llvm/8/lib /usr/lib/llvm/8/lib64 /lib64 /usr/lib64 /usr/local/lib64 /lib32 /usr/lib32 /usr/local/lib32 /lib /usr/lib /usr/local/lib /usr/lib64/rust-1.35.0 /usr/games/lib64 /usr/games/lib /usr/lib64/fltk >checking for library containing dlopen... -ldl >checking for dlerror... yes >checking for shl_load... (cached) no >checking for shl_load in -ldld... (cached) no >checking for dld_link in -ldld... no >checking for _ prefix in compiled symbols... no >checking whether deplibs are loaded by dlopen... yes >checking for argz.h... yes >checking for error_t... yes >checking for argz_add... yes >checking for argz_append... yes >checking for argz_count... yes >checking for argz_create_sep... yes >checking for argz_insert... yes >checking for argz_next... yes >checking for argz_stringify... yes >checking if argz actually works... yes >checking whether libtool supports -dlopen/-dlpreopen... yes >checking for ltdl.h... yes >checking whether lt_dlinterface_register is declared... yes >checking for lt_dladvise_preload in -lltdl... yes >checking where to find libltdl headers... >checking where to find libltdl library... -lltdl >checking for unistd.h... (cached) yes >checking for dl.h... no >checking for sys/dl.h... no >checking for dld.h... no >checking for mach-o/dyld.h... no >checking for dirent.h... yes >checking for closedir... yes >checking for opendir... yes >checking for readdir... yes >checking for strlcat... no >checking for strlcpy... no >checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed >checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... (cached) yes >checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) none >checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of x86_64-pc-linux-gnu-g++... none >checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E >checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for x86_64-pc-linux-gnu-g77... no >checking for x86_64-pc-linux-gnu-xlf... no >checking for x86_64-pc-linux-gnu-f77... no >checking for x86_64-pc-linux-gnu-frt... no >checking for x86_64-pc-linux-gnu-pgf77... no >checking for x86_64-pc-linux-gnu-cf77... no >checking for x86_64-pc-linux-gnu-fort77... no >checking for x86_64-pc-linux-gnu-fl32... no >checking for x86_64-pc-linux-gnu-af77... no >checking for x86_64-pc-linux-gnu-xlf90... no >checking for x86_64-pc-linux-gnu-f90... no >checking for x86_64-pc-linux-gnu-pgf90... no >checking for x86_64-pc-linux-gnu-pghpf... no >checking for x86_64-pc-linux-gnu-epcf90... no >checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for flex... flex >checking lex output file root... lex.yy >checking lex library... -lfl >checking whether yytext is a pointer... yes >checking for bison... bison -y >checking ieeefp.h usability... no >checking ieeefp.h presence... no >checking for ieeefp.h... no >checking for isnan... yes >checking whether isfinite is declared... yes >checking whether isnan is declared... yes >checking whether you have IEEE 754 floating-point arithmetic... yes >checking for working isfinite... yes >checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v >checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../.. -ldl -lgfortran -lm -lquadmath >checking for dummy main to link with Fortran 77 libraries... none >checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore >checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... (cached) -v >checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... (cached) -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0 -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/9.1.0/../../.. -ldl -lgfortran -lm -lquadmath >checking if sgemm_ is being linked in already... no >checking for ATL_xerbla in -latlas... no >checking for sgemm_ in -lblas... no >checking for sgemm_ in -lmkl... no >checking for sgemm_ in -framework vecLib... no >checking for sgemm_ in -lcxml... no >checking for sgemm_ in -ldxml... no >checking for sgemm_ in -lscs... no >checking for sgemm_ in -lcomplib.sgimath... no >checking for sgemm_ in -lblas... (cached) no >checking for sgemm_ in -lblas... (cached) no >configure: error: "You need to install the LAPACK library" > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/sci-mathematics/jags-4.2.0/work/JAGS-4.2.0/config.log > * ERROR: sci-mathematics/jags-4.2.0::gentoo failed (configure phase): > * econf failed > * > * Call stack: > * ebuild.sh, line 124: Called src_configure > * environment, line 1961: Called econf '--with-blas=' '--with-lapack=' > * phase-helpers.sh, line 718: Called __helpers_die 'econf failed' > * isolated-functions.sh, line 119: Called die > * The specific snippet of code: > * die "$@" > * > * If you need support, post the output of `emerge --info '=sci-mathematics/jags-4.2.0::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-mathematics/jags-4.2.0::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-mathematics:jags-4.2.0:20190629-135255.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-mathematics/jags-4.2.0/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-mathematics/jags-4.2.0/temp/environment'. > * Working directory: '/var/tmp/portage/sci-mathematics/jags-4.2.0/work/JAGS-4.2.0' > * S: '/var/tmp/portage/sci-mathematics/jags-4.2.0/work/JAGS-4.2.0'
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