sci-libs:libctl-3.2:20180430-190038.log

sci-libs:libctl-3.2:20180430-190038.log (text/plain), 19.38 KB, created by Toralf Förster on 2018-04-30 19:07:19 UTC

 * Package:    sci-libs/libctl-3.2
 * Repository: gentoo
 * Maintainer: [e-mail]
 * USE:        abi_x86_64 amd64 elibc_glibc kernel_linux userland_GNU
 * FEATURES:   network-sandbox preserve-libs sandbox userpriv usersandbox
 * Using following Fortran compiler:
 *   F77: x86_64-pc-linux-gnu-gfortran
 *   FC:  x86_64-pc-linux-gnu-gfortran
>>> Unpacking source...
>>> Unpacking libctl-3.2.tar.gz to /var/tmp/portage/sci-libs/libctl-3.2/work
>>> Source unpacked in /var/tmp/portage/sci-libs/libctl-3.2/work
>>> Preparing source in /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2 ...
 * Running elibtoolize in: libctl-3.2/
 *   Applying portage/1.2.0 patch ...
 *   Applying sed/1.5.6 patch ...
 *   Applying as-needed/2.4.2 patch ...
 *   Applying target-nm/2.4.2 patch ...
 *   Applying ppc64le/2.4.2 patch ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build"
 * econf: updating libctl-3.2/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating libctl-3.2/config.sub with /usr/share/gnuconfig/config.sub
/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --libdir=/usr/lib64 --docdir=/usr/share/doc/libctl-3.2 --enable-shared --disable-static
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configure: creating ./config.status
config.status: creating Makefile
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config.status: creating examples/Makefile
config.status: creating examples/example.scm
config.status: creating utils/gen-ctl-io
config.status: creating config.h
config.status: creating src/ctl.h
config.status: executing depfiles commands
config.status: executing libtool commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2 ...
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build"
make -j 1 
make  all-recursive
make[1]: Entering directory '/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build'
Making all in src
make[2]: Entering directory '/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build/src'
make  all-am
make[3]: Entering directory '/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build/src'
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src -I..   -pthread -I/usr/include/guile/2.2  -O2 -pipe -march=native -c -o ctl.lo /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src/ctl.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src -I.. -pthread -I/usr/include/guile/2.2 -O2 -pipe -march=native -c /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src/ctl.c  -fPIC -DPIC -o .libs/ctl.o
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src -I..   -pthread -I/usr/include/guile/2.2  -O2 -pipe -march=native -c -o subplex.lo /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src/subplex.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src -I.. -pthread -I/usr/include/guile/2.2 -O2 -pipe -march=native -c /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src/subplex.c  -fPIC -DPIC -o .libs/subplex.o
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src -I..   -pthread -I/usr/include/guile/2.2  -O2 -pipe -march=native -c -o ctl-f77-glue.lo /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src/ctl-f77-glue.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src -I.. -pthread -I/usr/include/guile/2.2 -O2 -pipe -march=native -c /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src/ctl-f77-glue.c  -fPIC -DPIC -o .libs/ctl-f77-glue.o
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src -I..   -pthread -I/usr/include/guile/2.2  -O2 -pipe -march=native -c -o integrator.lo /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src/integrator.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src -I.. -pthread -I/usr/include/guile/2.2 -O2 -pipe -march=native -c /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src/integrator.c  -fPIC -DPIC -o .libs/integrator.o
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src -I..   -pthread -I/usr/include/guile/2.2  -O2 -pipe -march=native -c -o cintegrator.lo /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src/cintegrator.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src -I.. -pthread -I/usr/include/guile/2.2 -O2 -pipe -march=native -c /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/src/cintegrator.c  -fPIC -DPIC -o .libs/cintegrator.o
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native -no-undefined -version-info 5:0:0 -Wl,-O1 -Wl,--as-needed -o libctl.la -rpath /usr/lib64 ctl.lo subplex.lo ctl-f77-glue.lo integrator.lo cintegrator.lo  -lguile-2.2 -lgc
libtool: link: x86_64-pc-linux-gnu-gcc -shared  -fPIC -DPIC  .libs/ctl.o .libs/subplex.o .libs/ctl-f77-glue.o .libs/integrator.o .libs/cintegrator.o   -Wl,--as-needed -lguile-2.2 -lgc  -O2 -march=native -Wl,-O1   -Wl,-soname -Wl,libctl.so.5 -o .libs/libctl.so.5.0.0
libtool: link: (cd ".libs" && rm -f "libctl.so.5" && ln -s "libctl.so.5.0.0" "libctl.so.5")
libtool: link: (cd ".libs" && rm -f "libctl.so" && ln -s "libctl.so.5.0.0" "libctl.so")
libtool: link: ( cd ".libs" && rm -f "libctl.la" && ln -s "../libctl.la" "libctl.la" )
make[3]: Leaving directory '/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build/src'
make[2]: Leaving directory '/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build/src'
Making all in utils
make[2]: Entering directory '/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build/utils'
/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build/utils/gen-ctl-io --code -o ctl-io.c /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/utils/geom.scm /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2
;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0
;;;       or pass the --no-auto-compile argument to disable.
;;; compiling /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/base/include.scm
;;; WARNING: compilation of /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/base/include.scm failed:
;;; failed to create path for auto-compiled file "/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/base/include.scm"
sed 's,/.* Input variables .*/,@#include "geom-ctl-io-defaults.c"@#if 0@,;s,/.* Output variables .*/,#endif@,' ctl-io.c | tr '@' '\n' > geom-ctl-io.c
/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build/utils/gen-ctl-io --header -o ctl-io.h /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/utils/geom.scm /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2
;;; note: auto-compilation is enabled, set GUILE_AUTO_COMPILE=0
;;;       or pass the --no-auto-compile argument to disable.
;;; compiling /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/base/include.scm
;;; WARNING: compilation of /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/base/include.scm failed:
;;; failed to create path for auto-compiled file "/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/base/include.scm"
cp -f ctl-io.h ctlgeom-types.h
make  all-am
make[3]: Entering directory '/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build/utils'
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/utils -I.. -I../src   -pthread -I/usr/include/guile/2.2  -O2 -pipe -march=native -c -o geom.lo /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/utils/geom.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/utils -I.. -I../src -pthread -I/usr/include/guile/2.2 -O2 -pipe -march=native -c /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/utils/geom.c  -fPIC -DPIC -o .libs/geom.o
/bin/sh ../libtool --tag=CC   --mode=compile x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/utils -I.. -I../src   -pthread -I/usr/include/guile/2.2  -O2 -pipe -march=native -c -o geom-ctl-io.lo geom-ctl-io.c
libtool: compile:  x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/utils -I.. -I../src -pthread -I/usr/include/guile/2.2 -O2 -pipe -march=native -c geom-ctl-io.c  -fPIC -DPIC -o .libs/geom-ctl-io.o
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native -version-info 5:0:0 ../src/libctl.la -Wl,-O1 -Wl,--as-needed -o libctlgeom.la -rpath /usr/lib64 geom.lo geom-ctl-io.lo  -lguile-2.2 -lgc
libtool: link: x86_64-pc-linux-gnu-gcc -shared  -fPIC -DPIC  .libs/geom.o .libs/geom-ctl-io.o   -Wl,-rpath -Wl,/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build/src/.libs ../src/.libs/libctl.so -Wl,--as-needed -lguile-2.2 -lgc  -O2 -march=native -Wl,-O1   -Wl,-soname -Wl,libctlgeom.so.5 -o .libs/libctlgeom.so.5.0.0
libtool: link: (cd ".libs" && rm -f "libctlgeom.so.5" && ln -s "libctlgeom.so.5.0.0" "libctlgeom.so.5")
libtool: link: (cd ".libs" && rm -f "libctlgeom.so" && ln -s "libctlgeom.so.5.0.0" "libctlgeom.so")
libtool: link: ( cd ".libs" && rm -f "libctlgeom.la" && ln -s "../libctlgeom.la" "libctlgeom.la" )
x86_64-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/utils -I.. -I../src   -pthread -I/usr/include/guile/2.2  -O2 -pipe -march=native -c /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2/utils/geomtst.c
/bin/sh ../libtool --tag=CC   --mode=link x86_64-pc-linux-gnu-gcc  -O2 -pipe -march=native  -Wl,-O1 -Wl,--as-needed -o geomtst geomtst.o libctlgeom.la ../src/libctl.la -lguile-2.2 -lgc
libtool: link: x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -Wl,-O1 -o .libs/geomtst geomtst.o  -Wl,--as-needed ./.libs/libctlgeom.so /var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build/src/.libs/libctl.so ../src/.libs/libctl.so -lguile-2.2 -lgc
/usr/lib/gcc/x86_64-pc-linux-gnu/7.3.0/../../../../x86_64-pc-linux-gnu/bin/ld: geomtst.o: undefined reference to symbol 'sqrt@@GLIBC_2.2.5'
/lib64/libm.so.6: error adding symbols: DSO missing from command line
collect2: error: ld returned 1 exit status
make[3]: *** [Makefile:335: geomtst] Error 1
make[3]: Leaving directory '/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build/utils'
make[2]: *** [Makefile:255: all] Error 2
make[2]: Leaving directory '/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build/utils'
make[1]: *** [Makefile:361: all-recursive] Error 1
make[1]: Leaving directory '/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build'
make: *** [Makefile:267: all] Error 2
 * ERROR: sci-libs/libctl-3.2::gentoo failed (compile phase):
 *   emake failed
 * 
 * If you need support, post the output of `emerge --info '=sci-libs/libctl-3.2::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sci-libs/libctl-3.2::gentoo'`.
 * The complete build log is located at '/var/log/portage/sci-libs:libctl-3.2:20180430-190038.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-libs/libctl-3.2/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-libs/libctl-3.2/temp/environment'.
 * Working directory: '/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2_build'
 * S: '/var/tmp/portage/sci-libs/libctl-3.2/work/libctl-3.2'