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Gentoo's Bugzilla – Attachment 520718 Details for
Bug 648618
sci-biology/fasta-36.3.5e : dropnnw2.c:567:18: error: OVERFLOW undeclared (first use in this function)
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sci-biology:fasta-36.3.5e:20180223-085849.log
sci-biology:fasta-36.3.5e:20180223-085849.log (text/plain), 55.77 KB, created by
Toralf Förster
on 2018-02-23 17:51:41 UTC
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Description:
sci-biology:fasta-36.3.5e:20180223-085849.log
Filename:
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Creator:
Toralf Förster
Created:
2018-02-23 17:51:41 UTC
Size:
55.77 KB
patch
obsolete
> * Package: sci-biology/fasta-36.3.5e > * Repository: gentoo > * Maintainer: sci-biology@gentoo.org > * USE: abi_x86_64 amd64 cpu_flags_x86_sse2 elibc_glibc kernel_linux userland_GNU > * FEATURES: network-sandbox preserve-libs sandbox userpriv usersandbox >>>> Unpacking source... >>>> Unpacking fasta-36.3.5e.tar.gz to /var/tmp/portage/sci-biology/fasta-36.3.5e/work >>>> Source unpacked in /var/tmp/portage/sci-biology/fasta-36.3.5e/work >>>> Preparing source in /var/tmp/portage/sci-biology/fasta-36.3.5e/work/fasta-36.3.5e ... > * Applying fasta-36.3.5e-ldflags.patch ... > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/fasta-36.3.5e/work/fasta-36.3.5e ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/fasta-36.3.5e/work/fasta-36.3.5e ... >make -j 1 -f ../make/Makefile.linux64_sse2 'CC=x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math' 'HFLAGS=-Wl,-O1 -Wl,--as-needed -o' all >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DCOMP_THR -DCOMP_MLIB -c comp_lib8.c -o comp_mthr8.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c work_thr2.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c pthr_subs2.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DCOMP_THR -DCOMP_MLIB -c compacc2.c -o compacc2_t.o >compacc2.c: In function âsave_bestâ: >compacc2.c:1593:80: warning: format â%lldâ expects argument of type âlong long intâ, but argument 19 has type âoff_t {aka long int}â [-Wformat=] > "%-12s %6d %d %.5f %.5f %4d %4d %4d %2d %2d %4d %4d %4d %2d %2d %5d %8lld\n", > ~~~~^ > %8ld >compacc2.c:1601:28: > rbuf_dp->stats_idx, rbuf_dp->mseq->lseek); > ~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c mshowbest.c -o showbest.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c build_ares.c -o build_ares.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c re_getlib.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DCOMP_THR -c mshowalign2.c -o mshowalign2_t.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c htime.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c apam.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c doinit.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTA initfa.c -o init_fa.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DLOCAL_SCORE -c scaleswn.c -o scale_se.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c karlin.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c dropnfa.c -o drop_nfa.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c wm_align.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DFASTA -c cal_cons.c -o calcons_fa.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c nmgetlib.c -o lgetlib.o >nmgetlib.c: In function âagetlibâ: >nmgetlib.c:573:2: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(&lm_fd->lline[strlen(lm_fd->lline)],MAX_STR/2,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:575:2: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(&lm_fd->lline[MAX_STR/2],MAX_STR/2,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:619:5: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(&lm_fd->lline[strlen(lm_fd->lline)],MAX_STR-strlen(lm_fd->lline),lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:634:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c: In function âaranlibâ: >nmgetlib.c:654:5: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c: In function âlgetlibâ: >nmgetlib.c:716:7: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:754:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c: In function âlget_annâ: >nmgetlib.c:778:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(desc,sizeof(desc),lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:780:5: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(desc,sizeof(desc),lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:784:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(acc,sizeof(acc),lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:786:5: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(acc,sizeof(acc),lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:794:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(ver,sizeof(ver),lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:796:5: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(ver,sizeof(ver),lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c: In function âlranlibâ: >nmgetlib.c:870:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:877:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c: In function âpgetlibâ: >nmgetlib.c:916:5: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); /* get the extra line */ > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:938:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c: In function âpranlibâ: >nmgetlib.c:962:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:966:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:968:5: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:974:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c: In function âegetlibâ: >nmgetlib.c:1058:1: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c: In function âeranlibâ: >nmgetlib.c:1088:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1093:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1096:56: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > while (lm_fd->lline[0]!='D' || lm_fd->lline[1]!='E') fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1103:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c: In function âigetlibâ: >nmgetlib.c:1135:32: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > while (lm_fd->lline[0]==';') fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1167:6: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR-strlen(lm_fd->lline),lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1171:2: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c: In function âiranlibâ: >nmgetlib.c:1198:2: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1209:31: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > while (lm_fd->lline[0]==';') fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1218:2: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c: In function âvgetlibâ: >nmgetlib.c:1257:5: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1297:5: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(&lm_fd->lline[strlen(lm_fd->lline)],MAX_STR-strlen(lm_fd->lline),lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1303:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c: In function âvranlibâ: >nmgetlib.c:1330:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1346:5: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1363:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c: In function âgcg_getlibâ: >nmgetlib.c:1405:5: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1408:2: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(&lm_fd->lline[strlen(lm_fd->lline)],MAX_STR/2,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1410:7: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(&lm_fd->lline[strlen(lm_fd->lline)-MAX_STR/2],MAX_STR/2,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1430:3: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread((char *)seqp,(size_t)r_block,(size_t)1,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1445:5: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c: In function âgcg_ranlibâ: >nmgetlib.c:1469:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1479:5: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >nmgetlib.c:1510:3: warning: ignoring return value of âfgetsâ, declared with attribute warn_unused_result [-Wunused-result] > fgets(lm_fd->lline,MAX_STR,lm_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c mmgetaa.c -o lgetaa_m.o >mmgetaa.c: In function âload_mmapâ: >mmgetaa.c:117:63: warning: format â%lldâ expects argument of type âlong long intâ, but argument 3 has type âfseek_t {aka long int}â [-Wformat=] > fprintf(stderr,"\n *** Warning *** database too large (%lld) for 32-bit mmap()\n",f_size); > ~~~^ > %ld >mmgetaa.c:139:39: warning: format â%lldâ expects argument of type âlong long intâ, but argument 4 has type â__off_t {aka long int}â [-Wformat=] > fprintf(stderr," %s file size (%lld) and expected size (%lld) don't match\n", > ~~~^ > %ld > sname,statbuf.st_size,f_size); > ~~~~~~~~~~~~~~~ >mmgetaa.c:139:64: warning: format â%lldâ expects argument of type âlong long intâ, but argument 5 has type âfseek_t {aka long int}â [-Wformat=] > fprintf(stderr," %s file size (%lld) and expected size (%lld) don't match\n", > ~~~^ > %ld >mmgetaa.c: In function âcheck_mmapâ: >mmgetaa.c:794:31: warning: format â%lldâ expects argument of type âlong long intâ, but argument 4 has type âMM_OFF {aka long int}â [-Wformat=] > fprintf(stderr,"%d:\t%lld\t%lld\t%lld\n", > ~~~^ > %ld > i,m_fd->d_pos_arr[i],m_fd->s_pos_arr[i], > ~~~~~~~~~~~~~~~~~~ >mmgetaa.c:794:37: warning: format â%lldâ expects argument of type âlong long intâ, but argument 5 has type âMM_OFF {aka long int}â [-Wformat=] > fprintf(stderr,"%d:\t%lld\t%lld\t%lld\n", > ~~~^ > %ld > i,m_fd->d_pos_arr[i],m_fd->s_pos_arr[i], > ~~~~~~~~~~~~~~~~~~ >mmgetaa.c:794:43: warning: format â%lldâ expects argument of type âlong long intâ, but argument 6 has type âMM_OFF {aka long int}â [-Wformat=] > fprintf(stderr,"%d:\t%lld\t%lld\t%lld\n", > ~~~^ > %ld >mmgetaa.c:796:8: > m_fd->d_pos_arr[i+1]-m_fd->s_pos_arr[i]); > ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c c_dispn.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c ncbl2_mlib.c >ncbl2_mlib.c: In function âncbl2_getlibaâ: >ncbl2_mlib.c:1043:59: warning: format â%lldâ expects argument of type âlong long intâ, but argument 3 has type âfseek_t {aka long int}â [-Wformat=] > fprintf(stderr," could not read sequence record: %lld %ld != %ld\n", > ~~~^ > %ld > *libpos,tmp,seq_len); > ~~~~~~~ >ncbl2_mlib.c:1084:48: warning: format â%lldâ expects argument of type âlong long intâ, but argument 4 has type âfseek_t {aka long int}â [-Wformat=] > error: fprintf(stderr," error reading %s at %lld\n",libstr,*libpos); > ~~~^ ~~~~~~~ > %ld >ncbl2_mlib.c: In function âncbl2_getlibnâ: >ncbl2_mlib.c:1217:43: warning: format â%lldâ expects argument of type âlong long intâ, but argument 4 has type âfseek_t {aka long int}â [-Wformat=] > " could not read sequence record: %s %lld %ld != %ld: %d\n", > ~~~^ > %ld > libstr,*libpos,tmp,seqcnt,*seq); > ~~~~~~~ >ncbl2_mlib.c:1237:54: warning: format â%lldâ expects argument of type âlong long intâ, but argument 3 has type âfseek_t {aka long int}â [-Wformat=] > fprintf(stderr," could not read sequence record: %lld %ld/%ld\n", > ~~~^ > %ld > *libpos,tmp,seqcnt); > ~~~~~~~ >ncbl2_mlib.c:1349:48: warning: format â%lldâ expects argument of type âlong long intâ, but argument 4 has type âfseek_t {aka long int}â [-Wformat=] > error: fprintf(stderr," error reading %s at %lld\n",libstr,*libpos); > ~~~^ ~~~~~~~ > %ld >ncbl2_mlib.c: In function âload_ncbl2â: >ncbl2_mlib.c:758:5: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(title_str,(size_t)1,(size_t)title_len,ifile); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >ncbl2_mlib.c:768:5: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(date_str,(size_t)1,(size_t)date_len,ifile); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >ncbl2_mlib.c: In function âncbl2_getlibnâ: >ncbl2_mlib.c:1165:4: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(tmp_amb,(size_t)1,(size_t)(m_fd->s_pos_arr[lib_cnt]-m_fd->bl_lib_pos),m_fd->libf); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >ncbl2_mlib.c: In function âncbl2_ranlibâ: >ncbl2_mlib.c:1391:5: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(str,(size_t)1,(size_t)(llen),m_fd->hfile); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >ncbl2_mlib.c:1406:5: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(my_buff,(size_t)1,llen,m_fd->hfile); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >ncbl2_mlib.c: In function âsrc_int4_readâ: >ncbl2_mlib.c:1512:3: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread((char *)&b[0],(size_t)1,(size_t)4,fd); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >ncbl2_mlib.c: In function âsrc_long4_readâ: >ncbl2_mlib.c:1528:3: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread((char *)&b[0],(size_t)1,(size_t)4,fd); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >ncbl2_mlib.c: In function âsrc_uint4_readâ: >ncbl2_mlib.c:1543:3: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread((char *)&b[0],(size_t)1,(size_t)4,fd); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >ncbl2_mlib.c: In function âsrc_long8_readâ: >ncbl2_mlib.c:1559:3: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread((char *)&b[0],(size_t)1,(size_t)8,fd); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >ncbl2_mlib.c: In function âncbi_long8_readâ: >ncbl2_mlib.c:1579:3: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread((char *)&b[0],(size_t)1,(size_t)8,fd); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >ncbl2_mlib.c: In function âsrc_char_readâ: >ncbl2_mlib.c:1588:3: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(val,(size_t)1,(size_t)1,fd); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >ncbl2_mlib.c: In function âsrc_fstr_readâ: >ncbl2_mlib.c:1593:3: warning: ignoring return value of âfreadâ, declared with attribute warn_unused_result [-Wunused-result] > fread(val,(size_t)slen,(size_t)1,fd); > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c lib_sel.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c url_subs.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -o mrandom.o mrandom.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -Wl,-O1 -Wl,--as-needed -o ../bin/fasta36 comp_mthr8.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fa.o drop_nfa.o wm_align.o calcons_fa.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -lpthread >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DSW_SSE2 -DSSEARCH initfa.c -o init_sw_sse.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DSW_SSE2 -c dropgsw2.c -o dropgsw2_sse.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DSW_SSE2 -c smith_waterman_sse2.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DSSEARCH -c cal_cons.c -o calcons_sw.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c pssm_asn_subs.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -Wl,-O1 -Wl,--as-needed -o ../bin/ssearch36 comp_mthr8.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_sw_sse.o dropgsw2_sse.o smith_waterman_sse2.o wm_align.o calcons_sw.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz -lpthread >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DCOMP_MLIB -c comp_lib8.c -o comp_mlib8.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DCOMP_MLIB -c compacc2.c -o compacc2_s.o >compacc2.c: In function âsave_bestâ: >compacc2.c:1593:80: warning: format â%lldâ expects argument of type âlong long intâ, but argument 19 has type âoff_t {aka long int}â [-Wformat=] > "%-12s %6d %d %.5f %.5f %4d %4d %4d %2d %2d %4d %4d %4d %2d %2d %5d %8lld\n", > ~~~~^ > %8ld >compacc2.c:1601:28: > rbuf_dp->stats_idx, rbuf_dp->mseq->lseek); > ~~~~~~~~~~~~~~~~~~~~ >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DLALIGN -c mshowalign2.c -o lshowalign.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DLALIGN initfa.c -o init_lal.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c last_thresh.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DLALIGN -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DSW_SSE2 -c dropgsw2.c -o droplal2_sse.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c lsim4.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DLALIGN -DLCAL_CONS -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c cal_cons.c -o calcons_la.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -Wl,-O1 -Wl,--as-needed -o ../bin/lalign36 comp_mlib8.o compacc2_s.o showbest.o build_ares.o re_getlib.o lshowalign.o htime.o apam.o doinit.o init_lal.o droplal2_sse.o smith_waterman_sse2.o lsim4.o calcons_la.o scale_se.o karlin.o last_thresh.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o pssm_asn_subs.o -lm -lz >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTS initfa.c -o init_fs.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c scaleswt.c -o scaleswts.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c last_tat.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTS tatstats.c -o tatstats_fs.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DFASTS -c dropfs2.c -o drop_fs2.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DFASTS -c cal_consf.c -o calcons_fs.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -Wl,-O1 -Wl,--as-needed -o ../bin/fasts36 comp_mthr8.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fs.o drop_fs2.o calcons_fs.o scaleswts.o last_tat.o tatstats_fs.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o mrandom.o url_subs.o -lm -lz -lpthread >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTX initfa.c -o init_fx.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c faatran.c >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c dropfx.c -o drop_fx.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -Wl,-O1 -Wl,--as-needed -o ../bin/fastx36 comp_mthr8.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fx.o drop_fx.o faatran.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -lpthread >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTX -DTFAST initfa.c -o init_tfx.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DTFAST dropfx.c -o drop_tfx.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -Wl,-O1 -Wl,--as-needed -o ../bin/tfastx36 comp_mthr8.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tfx.o drop_tfx.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o url_subs.o mrandom.o -lm -lz -lpthread >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTY initfa.c -o init_fy.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c dropfz2.c -o drop_fz.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -Wl,-O1 -Wl,--as-needed -o ../bin/fasty36 comp_mthr8.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fy.o drop_fz.o faatran.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o url_subs.o mrandom.o -lm -lz -lpthread >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTY -DTFAST initfa.c -o init_tfy.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DTFAST dropfz2.c -o drop_tfz.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -Wl,-O1 -Wl,--as-needed -o ../bin/tfasty36 comp_mthr8.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tfy.o drop_tfz.o scale_se.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o url_subs.o mrandom.o -lm -lz -lpthread >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTS -DTFAST initfa.c -o init_tfs.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DTFAST -DFASTS dropfs2.c -o drop_tfs.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DTFAST -DFASTS -c cal_consf.c -o calcons_tfs.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -Wl,-O1 -Wl,--as-needed -o ../bin/tfasts36 comp_mthr8.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tfs.o drop_tfs.o calcons_tfs.o scaleswts.o last_tat.o tatstats_fs.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o mrandom.o url_subs.o -lm -lz -lpthread >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTM initfa.c -o init_fm.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTM tatstats.c -o tatstats_fm.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTM dropfs2.c -o drop_fm.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DFASTM -c cal_consf.c -o calcons_fm.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -Wl,-O1 -Wl,--as-needed -o ../bin/fastm36 comp_mthr8.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_fm.o drop_fm.o calcons_fm.o scaleswts.o last_tat.o tatstats_fm.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o mrandom.o url_subs.o -lm -lz -lpthread >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c mshowalign2.c -o mshowalign2_s.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTM -DTFAST initfa.c -o init_tfm.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DTFAST -DFASTM dropfs2.c -o drop_tfm.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DTFAST -DFASTM -c cal_consf.c -o calcons_tfm.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -Wl,-O1 -Wl,--as-needed -o ../bin/tfastm36 comp_mthr8.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_s.o htime.o apam.o doinit.o init_tfm.o drop_tfm.o calcons_tfm.o scaleswts.o tatstats_fm.o last_tat.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o mrandom.o url_subs.o -lm -lz -lpthread >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTF initfa.c -o init_ff.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DFASTF -c scaleswt.c -o scaleswtf.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTF tatstats.c -o tatstats_ff.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTF dropff2.c -o drop_ff2.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DFASTF -c cal_consf.c -o calcons_ff.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -Wl,-O1 -Wl,--as-needed -o ../bin/fastf36 comp_mthr8.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_ff.o drop_ff2.o calcons_ff.o scaleswtf.o last_tat.o tatstats_ff.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o mrandom.o url_subs.o -lm -lz -lpthread >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTF -DTFAST initfa.c -o init_tf.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DFASTF -DTFAST dropff2.c -o drop_tff.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -DTFAST -DFASTF -c cal_consf.c -o calcons_tff.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -Wl,-O1 -Wl,--as-needed -o ../bin/tfastf36 comp_mthr8.o work_thr2.o pthr_subs2.o compacc2_t.o showbest.o build_ares.o re_getlib.o mshowalign2_t.o htime.o apam.o doinit.o init_tf.o drop_tff.o calcons_tff.o scaleswtf.o last_tat.o tatstats_ff.o karlin.o lgetlib.o lgetaa_m.o c_dispn.o ncbl2_mlib.o lib_sel.o faatran.o mrandom.o url_subs.o -lm -lz -lpthread >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DNORMAL_DIST -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c scaleswn.c -o scale_sn.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c -DSW_SSE2 -DGLSEARCH initfa.c -o init_lnw_sse.o >x86_64-pc-linux-gnu-gcc -O2 -pipe -march=native -msse2 -ffast-math -DSW_SSE2 -DSHOW_HELP -DSHOWSIM -DUNIX -DTIMES -DHZ=100 -DMAX_WORKERS=8 -DTHR_EXIT=pthread_exit -DPROGRESS -DM10_CONS -DFASTA_HOST='"your_fasta_host_here"' -D_REENTRANT -DHAS_INTTYPES -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_FSEEKO -DSAMP_STATS -DPGM_DOC -DUSE_MMAP -D_LARGEFILE64_SOURCE -DBIG_LIB64 -c dropnnw2.c -o droplnw_sse.o >dropnnw2.c: In function âdo_workâ: >dropnnw2.c:567:18: error: âOVERFLOWâ undeclared (first use in this function); did you mean âOVERFLOW_SCOREâ? > if (score == OVERFLOW) { > ^~~~~~~~ > OVERFLOW_SCORE >dropnnw2.c:567:18: note: each undeclared identifier is reported only once for each function it appears in >make: *** [../make/Makefile.fcom:244: droplnw_sse.o] Error 1 > * ERROR: sci-biology/fasta-36.3.5e::gentoo failed (compile phase): > * emake failed > * > * If you need support, post the output of `emerge --info '=sci-biology/fasta-36.3.5e::gentoo'`, > * the complete build log and the output of `emerge -pqv '=sci-biology/fasta-36.3.5e::gentoo'`. > * The complete build log is located at '/var/log/portage/sci-biology:fasta-36.3.5e:20180223-085849.log'. > * For convenience, a symlink to the build log is located at '/var/tmp/portage/sci-biology/fasta-36.3.5e/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-biology/fasta-36.3.5e/temp/environment'. > * Working directory: '/var/tmp/portage/sci-biology/fasta-36.3.5e/work/fasta-36.3.5e/src' > * S: '/var/tmp/portage/sci-biology/fasta-36.3.5e/work/fasta-36.3.5e'
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