test-suite.log

test-suite.log (text/plain), 77.37 KB, created by Kent Fredric (IRC: kent\n) (RETIRED) on 2017-07-18 11:59:04 UTC

===============================================
   meme 4.11.2: tests/scripts/test-suite.log
===============================================

# TOTAL: 91
# PASS:  40
# SKIP:  21
# XFAIL: 0
# FAIL:  26
# XPASS: 0
# ERROR: 4

.. contents:: :depth: 2

RUN: ama
========

*******************************************************************************
Test ama1 ...
ama --verbosity 1 --scoring max-odds gomo/motif.meme gomo/seqs.fasta gomo/seqs.bg 1> results/ama1/ama_ImPl1_stdout 2> log
PASSED!
*******************************************************************************
Test ama2 ...
ama --pvalues --verbosity 1 --cs gomo/motif.meme gomo/seqs_red.fasta gomo/seqs.norc.bg 1> results/ama2/ama_Cr57y_stdout 2> log
PASSED!

RUN: ame
========

*******************************************************************************
Test ame1 ...
ame --oc results/ame1 --silent --verbose 1 --bgformat 0 --control common/Klf1-200-100-shuffled.s common/Klf1-200-100.s common/Jaspar-subset.meme &> log
PASSED!

RUN: centrimo
=============

*******************************************************************************
Test centrimo1 ...
centrimo -verbosity 1 -oc results/centrimo -flip common/Klf1.s centrimo/dreme-Klf1.txt &> log
PASSED!

RUN: create_priors
==================

*******************************************************************************
Test create-priors1 ...
create-priors -oc results/create-priors1 create-priors/chrX.fa create-priors/DNaseHS_gm12878.wig &> log
Creating priors with alpha=1.0 and beta=10000
Sequence size is 3000000 bases.
Scores were observed for 4140 bases.
Minimum score is 1
Median score is 1
Maximum score is 3.97638
Sum of scores is 7156.07
Sum of un-normalized priors is 762695
Sum of normalized priors = 10000
Sum of prior distribution = 1
PASSED!
*******************************************************************************
Test create-priors2 ...
create-priors -oc results/create-priors2 create-priors/chrX.fa create-priors/DNaseHS_gm12878.wig &> log
Creating priors with alpha=1.0 and beta=10000
Sequence size is 3000000 bases.
Scores were observed for 4140 bases.
Minimum score is 1
Median score is 1
Maximum score is 3.97638
Sum of scores is 7156.07
Sum of un-normalized priors is 762695
Sum of normalized priors = 10000
Sum of prior distribution = 1
PASSED!

RUN: dreme
==========

*******************************************************************************
Test dreme1 ...
dreme -oc results/dreme1 -v 1 -p common/Klf1-200-100.s &> log
Traceback (most recent call last):
  File "/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/dreme", line 21, in <module>
    shuffle =  __import__('fasta-dinucleotide-shuffle')
ImportError: No module named fasta-dinucleotide-shuffle
-------------------------------------------------------------------------------
dreme exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test dreme2 ...
dreme -norc -oc results/dreme2 -v 1 -p common/Klf1-200-100.s &> log
Traceback (most recent call last):
  File "/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/dreme", line 21, in <module>
    shuffle =  __import__('fasta-dinucleotide-shuffle')
ImportError: No module named fasta-dinucleotide-shuffle
-------------------------------------------------------------------------------
dreme exited with value 1 indicating failure.
FAILED!

RUN: fasta-center
=================

*******************************************************************************
Test fasta-center1 ...
fasta-center -len 100 -dna < common/Klf1-200.s 1> results/fasta-center1/fasta-center_hRAw6_stdout 2> log
Error parsing test /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts/fasta-center.test: Exec failed at /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/ExecUtils.pm line 157.

Can't exec "/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/fasta-center": No such file or directory at /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/ExecUtils.pm line 156.
-------------------------------------------------------------------------------
1,338c1
< >chr1:156887119-156887619
< ATTAAGACTAAGACAGCGACTGCAAAGCACCTGACATGCTAGAGACGCCCAACTGACTATCAACGCAATGAACATCCTGTTCACACTCAACCCCCATTCA
< >chr8:19984030-19984530
< AGTCCTGAAATCCTTTCTGAACTCTTGTCTGTCCCCAGCAGGAGCTATCTGCCATAATCACTTTGAGCCCATGTCAAGACCTTGAACATAAAGTCTAGGA
< >chr15:79757891-79758391
< AGAGGCCCAAAACTTGATGCAAAATGCGCTGCAAATATCTGACTTACAGAAAGCACAGCGCTTGCGCATTCAAGCAGAATGAGGGTGCAAACCCACATCT
< >chr10:57252236-57252736
< GTGGGCCTACTTTGCCAAGTAAAGAAGACTGTGTTAGGGAAGGCCTCTGTCATTGTCTTGAATTTGGACGTTAGAAGAGCTACTGTTACTGTTTTTTGGT
< >chr4:76585120-76585620
< CAAGCATATCACATGTCTTCCAATATTCAGCAGTATTTAACAGACAAGCATTGGGGCAAAGTGTCCTATAAAGTACCACTCAGCATATACTCCATTCTCA
< >chr19:47458494-47458994
< NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATGTTCAAGTGCCT
< >chr13:76003199-76003699
< CTTTTTGGCTACACCAGGCTGTTGGCCTCTTGGCACCAGGTTGACTCATCTTATCTCTCCTTAGCAGGTCTTCTCTTGCTTTCCCTCCCCTGCTCTCCTC
< >chr6:145703215-145703715
< AGTGGGGGAGGTGGGTGGTCAAGGAGGGAGTCTTTCTACATGTTTCTGAGTGTTTTAGCCTCTTCTCTTTGTAGGCAGTAGGTTGCCCGTGGGCTCTCTG
< >chr6:121187425-121187925
< ACCAAGAACTAAGTCTGTTAGCTAGAGAGTTACAAACTGTCTCAGCAGGGAACCGGTCCTGTCTGTCTGTGAGAGCGAAATGCTGCTTGAGGTATGGTGT
< >chr3:88305500-88306000
< NNNNNNNNNNNNNNNNNNNNNNNNNNNTGCAATGGGAGTGGCCTGAGGCTCCCTAACGGCTGGATTTCAAAAATGTCATTGTATTCCAGAGGTTTAGTAA
< >chr2:52304248-52304748
< CAACCAAGACAATGGTTATTTCTTTTAGAGAAACCTAGGCACAGAAACCATCAGTTAATTGAGCAGGCACAGATATGGCTAATCTACCATGCTCTGAATG
< >chr3:151777796-151778296
< ACTGCTGTGAGCCCTGAGCTGCTCAGGATACTTGGCAGCAGATCAAAGGGCTGGGCATGAAGGGCGTTCCCTTGGGCCAAGGCTCTAAACTGGGAGTTAG
< >chr10:128184604-128185104
< CCTCACTGTCCCGGTAGATTTAAGGGTGGAACTGCTCGCGGTAGCCAAAGCTAATCCGAAGTGTGGGGCGCGGCTAATTAGAATACTGACTGGGTCCGCC
< >chr4:135733850-135734350
< GATAAGGGCCAGCTGTGGAGCTGTGATGGGCACCAGGTTGGAATGAACCAGCTGCTTCTGAAAGGGACAGGTCCCCAGCCTGATTATTTGCCTCTCACTT
< >chr3:107899566-107900066
< ACAGTATCAGAAGTGGGCACCAGCTGCGTGTTTACAATCCCCATGTTTACGCCCTGTCACCTAATCTTGAAATAATGTTATTTCGTTTCTGGAATCTCCN
< >chr11:69714224-69714724
< ATCAGACTTCAGCCTGGGAGTTCCTCCGCACACCCTTCCCTTATTGTTACACCCCAAGACTTTCTTTGTCTCTGTAATTTGTTCCCGCCCTTCTCCATCA
< >chr4:135407873-135408373
< TGCCAGTTTGGCAGAATCTGATAGCTCTGGGTTCTATGGGCGGAACCCTCTGGAGACATGCTGTACTTTCAGATATGTTTGCTCCTAACGTAGCTAACGG
< >chr1:133343883-133344383
< CATGTTCCCATTATCTCTCATAAGCACTGGGTAGTTGTAGGGTGTGGCCTGATTGATCATGGCAGCATACTTGGTGTTGTGGGCTAACCATGGGGATAAT
< >chr10:110604369-110604869
< TGAGCCATAAGTACAGCCTAGAGCTTCTGAGACGCTGGGTGTGGCATTTGCTGGTGATCCTGCTCTTGGGAGATAGGGAAAGGAGGGTTACCTTGAGTTT
< >chr18:23982470-23982970
< NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAAGCCACCACGCC
< >chr1:36977019-36977519
< ACCTCCCCCTTCTCTTAAGGCAGACACTTAAATGCCTATCTTATGTTTTCAAAACCATTTCCTTTACAGATCCTCATTACTGAGCCTTTCAAGCCTTCTC
< >chr17:24289205-24289705
< CTCCCCAACTTGTTCTGCACACTACCACTACAGTGACTCAGCTAACCTCAGGGAGTGGCTGTCCCCCAATCCACACCCATACCACAGGCACGTCTGATGC
< >chr11:32150818-32151318
< AGGTGTACACACCCAGGCCAAGGGTGGAGCAGACCACTGTGGGATCTATGGAGATGCTTGAACGAGCAGATAACTAAGCCAAGCATGACTCAGAGTTTCT
< >chr7:101244829-101245329
< ATTCTAAAGCTCCTGTCATGAAAAAAAATTGTTTGACAATCCCCACTGGCTCTTACGCAGCAGATTTTAACTTGTCATACAAAAATAAATCAATGTTTCT
< >chr17:28960252-28960752
< CGCACTGGCTCTGTGAGGTAGCTCTGGGTGTGGCTGACCCTAGGCCCTTATCCTGTCTTAGCTTCTGCTGCCATTGCCAGCTGGGTTGGAGAGGGCTTGA
< >chr12:82044358-82044858
< NNNNNACAGTAAGCTTTCTTATCAACTCCTAACACCTTCAGGGAGGGTGTAACCCGATTTCTGGGGAGAGGAAGGCAGCTAGCAGGTCTGTGATGGACAA
< >chr5:33616214-33616714
< GAGGAGTACCCACCACCAGTCCAGGATGAAGGCAGGCCTGGAGGGCCTTACCCCGCCACACCCTGAAACAAACTGACAGGATCTGCAAAATGGCCTTGTG
< >chr19:5726889-5727389
< GTACATGGGTGGTTTTTGCTCCTCCCCTGGGAAGTCCCTGGGGCGTTAGCTGCTGTGTTAACACCTAGATTAGACTCCTTATCGCTCACACATCCAATTC
< >chr1:169314208-169314708
< CCACACCCAGGCAGCCTCTGCCACACCCTGGGTTGTTCCGAATGCAGAGGCAGCAGATAGCTTACAGGGCCAGGCCTGAGGAGCTGATAATTGGGAAAAG
< >chr1:43307690-43308190
< CTATTCACGAGAACTCAAAAGGGACTAAACCCACCAAACCATTGTGCCAGACACTATAGGAAGGAAGAAGGAGCCAAACCACCATGTTGGCTCATGTTCA
< >chr17:5112057-5112557
< TAACTTCAGGTCACTGCAGCAGGTATGACCCGTGATAAGAGCAAAACATGTGAGGGTGTGGCTCAGGGTTCCTGTCTGTGCTTAGTAGGGCCTTGCCTGC
< >chr3:97461668-97462168
< NNNNNNNNNNNNNNNNCCGCGTGCCCCATGGATAGACAAACTGCTTAGGAAGACAAGACGCCCCACTATCAAGCCCTGGGCGGACAGTTCACAGCCCTAA
< >chr13:100518008-100518508
< TGCCTTCTCTAAGGCTTGGGAAACAGGCAGAGAAAAGAGGTGTGAGATAAACAGGAGCGGAGTCGAGATTCTGCAGAAACAGCTCCGCCCAGTTCCGCCC
< >chr6:31150322-31150822
< CATAAAGCCTACATAATGGACAGATCAGATAGAAAGACCAAGGAATCCACACAACAAAGTAAAGAGCAGGCTCAAGGAGACATGCAGCTTTGTGCAAACT
< >chr11:102236405-102236905
< CTAACAGGAGGGACAGCCCCTCCCTTCAGAACAGCTGCAGCCCCACTTGATCTGTCGTATCTGCTGAGCCAGATGTTTGAGGTCCTCAACCTGACAGCTG
< >chr7:151917814-151918314
< GACTATGGTGAGCCCTGCCTTCTGGGTGTGGCTCCCTGCAGCAGCCAGATAGTCACAGATAACTTTCTTTTCCTCCAAAGCCAGCGACCCCAGTTCTGGG
< >chr9:102674395-102674895
< NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGATACCAAATAATGA
< >chr6:81915769-81916269
< GGGGTGTGGCCGGACGGTGGCTCCTATGGGACTAAACTTGCTTCCCGGTGTACCGCCGCTTGTTTGAGGGAGTTATACCTGTAAATGTATATAATTTTCC
< >chr11:117187372-117187872
< AGGCATGTGGGTTCTCCAGGAAGAACATGGCCTGTAGAGGGAGGAGGGGTGTGGCCTCAGAGAACCCACTGGAGAGATGGATCAAAGCTGGGCAGGGGTT
< >chr12:114390660-114391160
< CGCCCTAGGGCTTCTATGAGATAGTGCGTGACTAAGAGGTCCCCTTGCCCCTGCTGAGGAGAAGGGTGTGCCCAGGTTTAGTGCAGAGGTCAGAGGACTT
< >chr14:47973722-47974222
< TGCCTCTGAGCCATGCTGAGTCATCTGGGCGTAGGCACTGCTGGGTTTCATTCTTGCAACATAAAGAGCTAACAGAGTCCAGACAGAATCTAGCCTGGGT
< >chr15:58719281-58719781
< AGTGCCTCGTATACAGATGGAAGAGGGGAAAGTGAGCAAACAAAGCCCAAACCACAAAACTGGGTGGAGGTGCCATCTTCCTGCTCCAAACACCTTCCCC
< >chr19:32372782-32373282
< AAAGCAAACACCATCCCAATCCATCTCCTCACCATGCCATTGCGCCACCCGCACACGCACACTTCCTTAATAAACACTGGTTAATCAAGTTGTGAAATGA
< >chr4:109112541-109113041
< GTTGGTCATGCCTGTGAAACTGGGATTAGACTTTTGTGGGCCCTCCCAGGAAGGCCTGGGCGTAGAGGAGAGATAACTAGGAGGCAGGCCTAGATGCATT
< >chr12:112796794-112797294
< TCTCCAGACACTCCAGGCTTGGGTCCTAAAGGGCCTGGGTGTGACTGGGTACATCTGGCAGGTTCCCATTATCTCCTATGGACACTGTGAAGTTGTAGGG
< >chr7:104332488-104332988
< CAAGTTGTCTTTGGCTTATCTGCTGCCACTCCCCTCCTGCTGCTGTGTTAGTTCCCACTCTTGTGACCATAAGCCTCATAAGTGCTCTTTTAACCACCAT
< >chr10:126642277-126642777
< NNNNNNNNNNNNNNNNNNNNNNNNNNGCGGTTTTAGACGATGCGTGCCCAGTGGGAAGAGACACACCCAGTTTCTGTTAAGTCAAACAGAAGCAAGCAGT
< >chr9:57147433-57147933
< CCAGCTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
< >chr5:144579744-144580244
< AGCCGAGCAAGTGTGTGTCCTAGGAGAGGGCCCAGCTGTAAACATGCAGGTCCATCTCTTCTGTGACGCCGTGATAAGAGTGTCTGCACACCAAAGATTA
< >chr5:138127197-138127697
< GACCACTAGACTCTGATAGCTTCCAGTCTGTCTTTTGCTACAGGGTGTGGTCTGCAAGAGCAACCAGAGGGTGCGCTTCCTCCTCCTGTCTCTACTCCAC
< >chr10:59256089-59256589
< NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGGCCTTTCTTTCATTCTCATCAGCTCTATCAGAGTCCATGTGATAGAGGAGA
< >chr11:115372413-115372913
< AAAGTAACTCCATGTGTCTGTCCCTGAAGATAAACACATGTGCTTGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
< >chrX:7679265-7679764
< NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTGGCTGCAGAAACGCCCATCAGCCTTGGCATGTCACAAAGNNNNNNNNNNNNNNNNNNN
< >chr5:37127175-37127675
< ATTCTTCTCAGCAGAGACTCCGTTATCTGTAGTAGCAGAAAGAAATGGAACGTGGGAGGGGCACAGTGAGGACAGCTTGGGAGCCCAGATAAGGGTGGAG
< >chr1:137838164-137838664
< GAGAAGATAGCAGCTGCATGGAGAGATGGGTGTGGCTCTCTCTCCAGCTGGGAGCCCTGGAAGGGACAAGATAGAAGTCCTGTCCAGAAGCCAAGTCACG
< >chr13:3866266-3866766
< CGGAGGGCTTGTAAAAGATGTACCTCCTTTCCAGTGTGATTATCAGGGCGGGTTTGTACCTAGCCGTTCAGCCACACCCTTCTGGGTTGGTCCTGTTTGG
< >chr14:21299130-21299630
< CTGCAGCTTTGGGTGGAGCCGCGCAAGTGGGCGGAGCAGAGGGACTCAAAGATAGAGAGCTCCAGGCCTCCGGGGATCCTGAGAACCTAGGTTTGTTTCA
< >chr12:70860461-70860961
< ACGCCCATTTAACACTCCTATCTCACCAGGGCAGACACTAGGACTTGGCGCCTAGGACTCCACCCATTGTAACTGCAGCAAGCATCTGGAGTTACCTCTT
< >chr11:80597918-80598418
< NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCTCTGGTTTCTGAAGCCTAAATTTTTAAA
< >chr7:110976195-110976695
< CTGTTTCTGGGGTTGTGAGTCAACACAACTATGTCAGAAGCAAATGTGAGGAGCAACTGATCCTACCTCACCTTATATGCTCTGCCCTGGCTCCTGCCCT
< >chr10:93585404-93585904
< AGATTGCAGCAAGCCAGAGAGATGGGCGTATCCAGGGTGACCGTGAGGATGGCGGGGGAGATAGTGTCAGGCGCATAAGTTCTGGCCTATGGTGGGGATT
< >chr10:116195445-116195945
< GTCTCCGAGCTAATGTCAGGTCCGGCTTGATCCTGTTTGGTATTTATTCCCAAAGGAAGTCATGTACACTGTAGTCCTGAGGGCTGGCTGCAGGACAGAC
< >chr18:57137388-57137888
< ATGATGCCTTATCGGTGCTTCCAGAAATGACTTAGAGTCAGCCCTTCCATTTATGGCCTCAGAGGGGCTAGACGTGTGGGTGTGAGAGGCAGTAGATTCA
< >chr5:45951565-45952065
< TGGACATAAGAAACAAGGAAAAAGGTTTATCTGGACATTTACTAACCTTGGTGGGGACACGCCCCAGAGCCACACCCAGGTCTGGCAATCATCTGCATGC
< >chr11:61773536-61774036
< NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTATATTGGGTAGTATCTGTGAAAGCCAGCTACTTTGCNNNNNNNNNNNNN
< >chr3:104843905-104844405
< GCTGTGCCCTGCTCCGTCTCTGACTAACACCCCAGCTCTGCTCCTTCTGGCCCGCACTACACTGTGCAGCTTGCTTCTCCACAAAGCCCGTGCTCTGGAG
< >chr1:122244437-122244937
< GCTGAGACATTCAAAAGACAAACCACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
< >chr6:35303481-35303981
< AAACCACATTTAAAACTGAATGTAGAATTCCTTCGCTCTGCTGGCCAGTCCTTAGGACAGATCCTCCCATAATTAACAACATGGTCTTCTCTGGCAGGAC
< >chr18:80416880-80417380
< AGTCCAGAAGCCTCCTAGAGGTTGGGAGGGCCTCTCACCCTTGGGAGACACACCCACCTTATCTCCTCTGAGTGCTCTGGCCTGNNNNNNNNNNNNNNNN
< >chr5:121049618-121050118
< CTCAAGCACCATCACGAAGCCAAAAGATAAGCTTGCCAGGGTGGTACACGCCTATAACCGTAGCCCTCAGATCGGGAGGAAGGGACAGCCTAGGCTATAA
< >chr15:41338514-41339014
< TGGCCACTCCTACTTTCATGTTAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACATTTACTGCTGACCTTTTTCCTTA
< >chr7:38970375-38970875
< ACTCATTCCCAGCTCCCTCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
< >chr11:60988820-60989320
< CTAGTGTGGGCGTTTCTGCAGAGACTGCCATCTTGGCGACTGTGTTGGGTACCGCAATGCCACAGCTGGAGATTGGGCGTGGCAAGAATACAGATCTTCC
< >chr18:65586915-65587415
< CTAGGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
< >chr11:117642060-117642560
< CCTCCTCCCAGCCTGGTTAACTGTTCTTTATCAGAGGCTGAGCAAACGAGTTACTGCCCGCTCCGCCCTGGGCGTGGTGTCTGTTTCTAAAGCTAGGGTT
< >chr5:144386183-144386683
< TTTTATAACTGAACTTTTTGTCCAGGCTTGAATTATTTGTTCTTTGCCGTGTGCGATAAGGAAAGGATGGCGCAGGAATGGCTGGAGGGCGGTTACCAGG
< >chr9:120025371-120025871
< CTGGGTGTGGTGGGCCGACCTGCTGACGCCTTGTTCTCTTGTCTTGCAGTTACACCCAGTGATTAAGGCTTTCCTCTGCGGCTCCATCAGCGGGACCTGT
< >chr17:56074305-56074805
< GGAAGGGGCTAGGCAGTCTTGAATTTATTTTGGATTCTACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
< >chr7:36132953-36133453
< AGCCTCACCAAGGAATTCATTCAGACCCCGCCTGTCTGAGCTAGGGAGAGCACCATTATGTTTGAAGGAAATTGTTTGCCGATCTGAAACCTGTTACACG
< >chr15:91082416-91082916
< TTTCTGTCCATACAAACTGTCACGTAGCCTTTCAGAGATAAAAGGCACCACACCCTCCCAGCAGAGACATCTGTAGCCATAGTCTCTTATCAGGCTTTAT
< >chr7:19832207-19832707
< GCACTGGGTTCTGCCCTCTTATCAGAAAAGCCCCAGGCCACACCCAAGATGTCTGACTATAGGTAACAGGTTCATTCTCCCTGGCCCTTGTCCCTAGAGG
< >chr18:54151151-54151651
< GCTGTGTGTCTCCAGGACATTCTCCCTTCTATCTATAAGCAGGAGAAGGCTTACGAGTCTGATAATGAGGGACTTTCTTGTGAGTGGTCTGTTGACTATC
< >chr11:77795184-77795684
< AACTCTGCGCGTTGCAAGATGGGGATTGAAGTCAGCTGTAGGCAGGTAGCTGGGCGTTGTCAGGATTACGGACTGTTTGGGCTTTTGACTTCCTCTTTCG
< >chr19:45121628-45122128
< TGGCTGGAAAGAGATGCGAATGACGAGGATCTGCAAAAGGAGCCTCTAAGACCTGGAGTAGCAGACCAGGGTGCAAGCAAGGAGAGTCCATTGCCAAGGC
< >chr8:3522196-3522696
< AGTGGTACAGGTCAGCTGGCCTTTCACCTTCTCCATGGTGGCAAAGCTTATCCCGGGTATCAGCTTAGTGGTGGGCCAGGCAGTTCTTATTGCTTATCAC
< >chr5:105994747-105995247
< GGTCCTGTGTGACTGCTTAGAACTGATAATGAGCACGAGGCACCAGTCAGCCTTGAAGGAAAACTTGTGTCTGTTGAGGGAGATAAGTCTTCAGGATAAG
< >chr10:128286732-128287232
< GTACCTCAGTTTATAGTGTTCTTGCCTAGCATGCAAGAGAAATGAACAAAGGATTTGGGGTTCAAGGTCATCCTCCGATGCGCGCATGCNNNNNNNNNNN
< >chr19:5845899-5846399
< GTTAATTAAATTGCGGGAAAGGTGGTTGCAAGCTATGATAAAGCAAGACTTTTGTATGGTACACATGCATATAGAATGAATGTGTGTATGTAATGTTTAT
< >chr12:41693216-41693716
< CGCCACAGATGTGCGACTCAACCATTGAATTTCTAAAAGAAAAACTGCAGAGTTAGTGAGTACTTAAACCAAGCAGGGGCGTGTCTGCCTTCTGGCTTGT
< >chr11:54119664-54120164
< CTAAGGATGAATTCTGCTTTGTAATCTACTTTATAGCCCAGTGTAGCTCCCAGGTTTCTGCCACTCTGTCAAACAGGAAGATGCTCCTGAGCCAATGCCT
< >chr19:24609087-24609587
< AATGAAAATAATAAGACCACAGTAGCGGCATCTAGGGTGTACAAGGCACAGAAGCTGTTAGGTTGGGTGGGAACACAGGGCGGGCAAATATTCGGTCGCT
< >chr7:111007530-111008030
< GGACTTGGGGTAGTGTCAGCTGGGTGGGGTCACAGACTGTGGTGACAGATAAGAGCCAGAGCTGCACAGAGCTGAGTCAAGGTTGAGGCCTCCGTGAGAT
< >chr19:56465963-56466463
< NAAAATGTAAATGGAGCACTGGGAGTGAAAACTATTAAACAGGGTGGTTAGCACTTTTCTATAAGAATATCAGTTTGTGACCTTGGGCCTTGCTTCTTGG
< >chr12:41846176-41846676
< AGGAGGTACCCTCCCATTTCTTTTAGTAAAAGGCACTGTATGTTTGCCGAGTGCAAGTGATGATTGCTAGAAAATGTGCCTGTGGCTGATAAGAAAGAGA
< >chr15:80573350-80573850
< NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTAACACATGCCAGACCTCAGAGAGCTTATAAGCAGTAGTCCACACAGAAGG
< >chr12:71933519-71934019
< NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATTAGGACTTTTTTTTTTTTTAAGTTAGCATGTATTTGTTTTACACAGTGATAGGTTTCA
< >chr4:44262429-44262929
< AGTAAAATACAAATGCCTGACAGATAACTCAGTAAAGGATTGCAATCATTAAGCAAAAGCAAATGGCTCACTGGGCAAAGGAGTGCAGGAGAAGCCCTCA
< >chr5:97380648-97381148
< GTTAAGGGAGAGGGCGGGAGGGGGTGATAAGGCACACACTTTCAGGAAGACAGCATAATCGTGCGGGTATATGGGTAGGGTGCTGAGGCCGCCAGATGAG
< >chr5:131995379-131995879
< NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATGCCACTATGCTATNN
< >chr4:131582990-131583490
< NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGCCTGGCACTCACTCAC
< >chr19:60889899-60890399
< NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTGCTTAGGTAACCCTAAAAA
< >chr16:49839621-49840121
< CACCCGGCTTTCTCTTCACTGGTTTTATGAGCCGGTGCCAGCTGAGTCTAGATGGTAGAGTTTTACACTTGAATGAAACACACCCTGCCCTCGGTTCTGG
< >chr2:103728071-103728571
< ACCATCTGTATGGCGCAGCCATGCTCTCCTTCAAAATGCTGTATAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
< >chr4:41334759-41335259
< TTCTAGAAGGGCGTGCCGGTTTGTTTACCAAGTCATTATTGAGGTTATGCTGTGCTAGGCAGTCTGGGCCTGATAACTGGGGAGGGACAGGGAGGCAGCT
< >chr16:32508975-32509475
< GCTGGCAGGGCTTCAGTTGCTCTGCTCCCACTTTCTCCTCTGCCCCTTTTTGCAGAACCTACCTTTGCTTCTCAGACTTACCCCGCCCAGTCTTTGGCTG
< >chr7:16507689-16508189
< TCCATAGACAGCGTCTCTGGGACCAGTAACCTGAGAGCCCCTCGCCGTCCCTTCTCTATGCCATAATGGTTCAGTCCTCAGGGCGGTGGCTCGAGGCAGA
< >chr13:57679178-57679678
< TCAGCTCCAGCTGCATCTGCAAGAGTCACGCCCTTCTTAGAACTGCAGCTGTGTGTAGTGGGACTGTTCACTTTCTCAGTAAGAGTGAGGCACCTGTGAC
< >chr7:128009273-128009773
< TTCTAGCAGCTTGGGGGGAAAGATACAGTCACTCCAGAATGAGCTGGGTGAGCCAGAGTGTGCTGACTCACTGGGCAGAGATGTGTCCCTGCCTAAAGCC
< >chr2:154458204-154458704
< NNNNNNNNNNNNNNNNNNNNNNAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
< >chr5:34915767-34916267
< TGTCTGTGGAGCTTTATCAGAGCACACACAGACATCTCAGTCCTGACTCCACCCTGATTGACAGCCCAGTCTCCCAAACTGCCTACTGATCTTCTCGCCT
< >chr17:47735006-47735506
< CCCTTGCCTGCTTCTCTGGCCTTTTATCTCTGGCTCCAGTCTGGAGAGGAGTGGGTGGGGTGAAGGACACTTGGCATGTAGATACCCTTCTCTTGACATC
< >chr13:81067500-81068000
< GTTCTTATCCCTGTGGTTTATGCTTGTGGTAGAAACTGCACTAATATTTACATAAAGGGCGTGGTGGGGTGGGGTAGCAGCAAAGCCTGACTGAAGTGGG
< >chr1:134264178-134264678
< AGGAAGGAGCCTGTAGAGTCCTAGGTCCACTGTCTCTGAGCAGTTTTCCCCAGGCAGAATACCCATTCAGAGACTCTGCACGCATCTGAGCCTCAAGAAG
< >chr9:59598186-59598686
< TATTCCTCAGGCCTCACCAACCCAACCAGCCTTCAGGGAGCTCTGTACTGGCCGGAAAGTGAGACTTAAGGTCGTAATCCCAGAGTTTGCCTTTCCAACC
< >chr6:135115628-135116128
< TCAGTCATTCCTATCAGCCCTGTCCCAAGCATTCTCAAGACCCACCCAACTAAGCACAGAGGGCTCCCCATCCCTCCCTCCCTGAGCAATGAAGAGCCTG
< >chr9:24715045-24715545
< CCCGTGTATTTCTAAGGAGAAGGCACGCCCTGCTTATGCAGACTGCACCCCACTATCTGTCTGTTACCCTCTTCATAAGGCCAGCACCGAGCAGGTGGAG
< >chr2:37405047-37405547
< TTCTGTCAGGGTATCCTCTTAACACACAGAAGCACTATTAGTATTTCACAGATAAGTAAGTTATCAGCCAAGCCAAGACTGGAGCTATGGAATATTATTC
< >chr11:31712262-31712762
< TTTTTCTGACCTCCCCACCTCTGACCTCAGTCTCTGGTTCCTGTTGCTTCGAGACTGCATGGTTACCTTTTTATCCCCACAGACCATGGAGCACCTGTTA
< >chr1:175901567-175902067
< AACATCTTTTTACTTTTTATACTATCATAAGTAAATAGTTTTGTTGCTTTCAATGCCACCACTTGTTTGGGACCTTTGTGGTAACCATCCCCTTCAAAAG
< >chr3:19550495-19550995
< CAATATGCGCTCATGTGGGCCTGCCCAGGGAAGATAAAGGGCGTTGGCATGCCTGTGCTGTGATATGCTGGCAAATATGCTCCAGACTTCAGCAAAGCCC
< >chr14:63796627-63797127
< GCACCAGGAAAACGTTAACCAATCGGAAGCCGGAGGAGCCTGGCGCGATGACCACACCCTAGAATTTGATTGGAGAGCTGGAAAGCAGCCAGCGAACACG
< >chr3:96108390-96108890
< NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAGACTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
< >chr2:25148316-25148816
< CTTCCCCACACAAATTCCAGCCCACAGCTCCCTTGGCCCTGCTCTTCCACCCCTGCGCCCCCTAGTGGGGGTTCTGATTCAGACCTTGTAACATAGACCT
< >chr10:25018820-25019320
< GAGTGAGTCGCGGTGCCAGACTGGGGTTTTTAAACTATTTTAGCCAATCATAACTAAGGCGTTCACATGTTACTTCACCGGGCTTCAACTTTATCTTNNN
< >chr10:60612190-60612690
< AATGCTGATACTCAAATGAGGGTGTGGTTAGCAATGGCATTCTTATCTCCACCTAGTGTGTCCGAGATGGGACATTTTACCTCCTCTGCATCCCGTGACA
< >chr16:92715758-92716258
< AGTGGGGGAGGTGCTGCTCCTCTTGTGAAGGCAGATAATGCCTCCCGCTCCCTCAGCTATCTTCTGGGGCTCGCCCTGGAGATAACAGCTTCACTGCCTG
< >chr9:21362671-21363171
< AGCCAGCGCTTATGCCTGGTTATCTTCTATGTACAGGGTAGCAATTCCACCAACTCAGGAGGGTGTGTCAGACCTATCTTCCCTGTGCACTGTGACCTTC
< >chr13:54345922-54346422
< GTCAAAGGTAAATCGCAGGCGTCACCGATGTCAGCTTAGGAGACCATTAGTGGAGAGAGCTTGAGAGATGGTTCTCCCTTTGGCCAATGAGGGGAGAGAG
< >chr6:72223026-72223526
< CTGGTAAGTGGCCTGCCTCAGCTGAGATCCCATGGAGCCAGCTCTTGTTTGGTCAGTCTTGTCTACCCATCTTCCTGCCCCTCCCCCACCACCACCCTGA
< >chr9:57618594-57619094
< CCCTCTGCAGCTACAAGGGAGAGGTGGTGAGCCTCAGATCAGCTAGGGTGGAACTTACACATCTTGGCTTACTCTGTAGTAATAGATAACAGTGGAGCAG
< >chr9:112905111-112905611
< NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAN
< >chr7:87847381-87847881
< ACTCTCCTGGGAAACTTCATGACGACTGAGTCAAGCTGGCAACACCCGAATCCAACGCCCAGTGTTTCTGTTACCAGAAGATAAGCTCTGGTGTGCCCAG
< >chr7:53193729-53194229
< CTCAGCCCATTNNNNNNNNNNNNNNNNNNNNTCCAAAAACCTATCCCAGGAACCACCCCTCCCCCTCTACTTTGTATTTAATGGCCCTGCATTACTTATC
< >chr12:27135944-27136444
< TGCTCTGTCAGGTACAACTAATCTAGAGGCTGAGAAAACCCAGATAAAGAGGAACTGGGCATAGGAACCACCATTCAGCCAGGCCCCACCCTGCTAGCTC
< >chr1:75175760-75176260
< NNNNNNNNCCCACAATGACTCAGCACAGACACACCCCATCCAATGCTGGGTAACCCCACCAGCTGGCTATCAGCTTCCAGCCACCGCCAGACACTCCATT
< >chr18:65375002-65375502
< TGGGTTCCAGGACTCTTACTTCACTGTGGAGGGACTTCGAGCATCAGGTGGCTCTCTCATGTTCCTGCCCCCTTTACTCCATGCCAAACCTGGGATTAGA
< >chr11:57590460-57590960
< GGTGCTGTACAGAACTGGAGTCATCCCGTGCTAGTCTCTCAATCCACAGGAGACAGAATGTGAAAACACGGTGGATGGCGTCCCAGAAACAGCTGGGACC
< >chr7:91033422-91033922
< NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGCTCCCCGCCCTGTAACGAGGAATTAAACGGAGGACCTTGAGCTACTGTACTTTTTAT
< >chr12:90222447-90222947
< TGGCGCATGAGTCACCCATGTTCCTTAACACAATCCGTTTCTGCAGGCCCAGCCACCTCTTTCCCTGAAGAACTGACCATGATGCAGACATCAGCTGGTG
< >chr12:17246027-17246527
< CTGTCGTTATTTCTGTTCAAAATAGGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
< >chr1:169322898-169323398
< AGAAACCACAACCTCGGGAGTGACTCAGTGTCTCTTACTCCCTTCCACCACCCTGCAGGTGCCCCACCCTGTGGTTCTGGGTCTCCCTGTAGCGACACAA
< >chr7:105490727-105491227
< CAGTAGAATCCATCTGGATCTGCTTGTTCTAAGACCTGAACCACACCCACCACACCCACCCATGTGAAAGTTTAAAGATTATGTAATCCTAAAGCTAAAC
< >chr9:34860987-34861487
< ATAGCAAAGAGATAATGAGAGGAGTGCCACAAGAAACCCCAGCACAAGAACTGTGCAAGGTGGCACACACTTGTNNNNNNNNNNNNNNNNNNNNNNNNNN
< >chr15:78243390-78243890
< CAAACTCTAGCCAGCAATTAGCTGGGTACAGTGACTTTGGGTGTGACTTCGCCTTAGGCTGGCCATCTGTGTGTGGGGCGGTGCCTAACTCTGCTGGCTG
< >chr8:83025150-83025650
< AGATTACTTAGGGGTAGGCAAGAGGGCGGGCCCAGTGGCAGACAGATCCCACTGCCTGCAAAATGATAGCCTATAAGCCAGTTGGGTGATGAGATAAGGG
< >chr15:81700367-81700867
< TTCTGCCCTGATACAGAGTAACTGCTCTTTATTAGACCACACCCAGTTTGGCTCACAGGCTTGAAGAAATTACCTAGATAACTAGCTGAACACTGCAATC
< >chr10:24548849-24549349
< CCATGTTTGGAACGCAGCCGCCTTAGCTCATGCTACATGTGGAAACAAACCAGATTACTGCATTCTGCAGCTCAAACTCTGCAGTCCAAATCCAAGACGA
< >chr13:112863645-112864145
< TCTGCAGACTTCTGCAGAGAAGAGTCCAGGTAGGGTGGAGCCCAGATGTGAGCTCCTCTAGCTGCTCACACTCTGACCACACCCAAATCTGCATATGGAA
< >chr1:88208803-88209303
< TCAGGGTGGCCTTTGCCAGCTTTTGAAAGTCCCCACCCCTGTCTTAATCAAGTCCTTGCAGACCTTTAAACCGACCCAATGGGCTAAATGTATCATGCCC
< >chr14:79702844-79703344
< TTAGTGGTTTAATAGAAGGCAGGCCTGTCTCTTTTCAGCACCACTTTGAAGTTAGCCACACCCTGCCTCCCTAGGGTGAAGAAGAACTAAGCAGTCAAGG
< >chr8:113905790-113906290
< NNNNNNGATTTTTGGACAGCATTTTCATTGACATAAAGTTTGAGGATGCAGCTCAGAGATAGGATGTCTGTTTAGTGAGCACACAAGGCCGTTTATTTGA
< >chr14:61272713-61273213
< ACGCTCAGCTGCGGGACACTATCTGCCCCCCTCCTCATCTGTCTCCTGGAGATAAGTCCAAGCCTCTTAGCATCCTTCTGAGAACCCAGAGAGACTCAGG
< >chr8:107486057-107486557
< GCGGTTATGGGTTCCCTTTGCCTGTGCCCTGATAACAGTGAGATAGGAACTCCCACAACCTTGTGGCAACTGATTACAGAAAACTAACCCTGAAGCATCT
< >chr5:65202593-65203093
< GACTTCATGCACTGGGAACTACACCACCCTGACAGTTCTTTCTGGTTATTTTTAAGGTTCCAGCCATCCTTGGTTCAGGGTGGAATTTCCAGGAACTGGC
< >chr11:105013714-105014214
< TTCTGCGGGAGACACCATCTCTGACCGGTCAGTCGCAATGGTCATGGAACACAGAGATAGCTCAAATTACTACAACACCACCCAAGCGGGCCAGAGTTAC
< >chr4:154285745-154286245
< AGGGTGTTTGTACAGTAGAGATGGAGTTGGGGTGGGGCTGGGTGGGACTGGGCACAGTGTTATCAATAGTGCCAGCCAGAGATCACAGGACAACTTGAAG
< >chr7:103853792-103854292
< GCCACAGTGATGCCAGAGCTATTAGAAAGTGGTTACAAAGAACTGCTCAGGAAAATCTGATGGCTTCAACTTAACTAAATGACAGTATGGGCGTGGCAAG
< >chr1:183146440-183146940
< TCTCTCCAGCACAGGTGATGGGGGGTGGGGGGTAAGAGGGAGGTGCCTTGAAGCAGCAGGAACATCTGGGAGGACAGGCCTTCTGACCTCACAAGCCAGC
< >chr9:98389943-98390443
< TATGCCCATTTACACCCAGGCTTCCTGCTCACCACAATTAATAGCCCTTCTTATCTTCAGCCCCACCCCACCAGGCCAGCTTGCCTTATATTCTTGCATG
< >chr15:76778491-76778991
< GGTTCCATTCTCTCCAGGAATCAATTGTCTTGTTTCTTGGCGGCACACTCTGCTGGGTTCTCCGAGGCCTTTAAGTTCATCCCCGTGCACTCTGTCTCCT
< >chr8:97323995-97324495
< CTCCTATGGGAAGAAGGCAAGGTGGAAGAACTGTCTTGGCGAGGAGATGGGGAGCAGAGAGAATGCATGGGACAGATGTCCATCTTCCCTAGGTAATCTG
< >chr2:152650541-152651041
< TTCAGAAACTTAGTATCTTTTCATCAGTGACTACTACGCCCAAGACCTGTGCACTGGGCTAAGATAACCAGTGAGCAAGATGTGGACTCTGCCTCAACTC
< >chr7:16685175-16685675
< AAGTTCAGGTTAGGCGTGGTGTTGGGGCGGTGCCTCCCGCTCAGTTTTCAGCAGTAGTTTTCCTGATGGCTCAGTGTCTGATCTCTTTGGCCCAGAGAGA
< >chr11:95661715-95662215
< GCCACAAGATATGATACGAGATACTGACAGCCCCATCACAGCTCAGCGTGTCCTATCCGAGACAGCAGCCAACTGGGTGACACCCCAGCCTCTTCTTGTG
< >chr10:59465795-59466295
< TGCGTTGGTGCTGTCTGCTCCGCCTCTCTAGCGTAGGATGTTCAGCGTTTGCTTTTTATGTGAGAATTGCACGAAAGCATATCCACTTTTCCCTCTTCAA
< >chr7:38977099-38977599
< GTAGAAGTTGCAAATATTTTACAGAAAATCCCTGTGTGTCCCTCAGTCAGGTTTAGTTTTAGTGGGAATGTTTCCCGGTCGGGACCGAGCCGCCAGCACT
< >chr1:173447614-173448114
< GCCCTTGGAGATATTCAATAGAGACCTTCCTGAATTATAAATTTCTCCATTCAAGCTCTGGAAGCTAAGGACCTTTTTTTTAAGGCCTGGCCCTTGGGTC
< >chr4:43977111-43977611
< TTTTTCTATAGAAGCAGGGTGTTCCCCTGGCTGGGTGTGGTCGCCAGTGATAACTTGCCTCCTAAGGCTCTTGCCCTGCTCAGACTGAGAGGGGACTCCT
< >chr8:92969521-92970021
< GCAAGCATGGTCAAGTTCATGCTGAAATGACATTTCCAAGAAGGCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
---
> [35mERROR: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts/fasta-center.test[0m (FAULT IN TEST!)
FAILED!

RUN: fasta-dinucleotide-shuffle
===============================

*******************************************************************************
Test fasta-dinucleotide-shuffle1 ...
fasta-dinucleotide-shuffle -f common/Klf1-200-100.s -t -dinuc 1> results/fasta-dinucleotide-shuffle1/fasta-dinucleotide-shuffle_DHzuX_stdout 2> log
PASSED!

RUN: fimo
=========

*******************************************************************************
Test fimo1 ...
fimo --oc results/fimo1 --motif-pseudo 0.01 fimo/MCM1.meme.html fimo/spiked.fasta &> log
Using motif +1 of width 13.
Using motif -1 of width 13.
Computing q-values.
Estimating pi_0 from a uniformly sampled set of 5308 p-values.
Estimating pi_0.
Estimated pi_0=0.843255
PASSED!
*******************************************************************************
Test fimo2 ...
fimo --oc results/fimo2 --motif 2 --motif 3 --thresh 0.01 common/crp0.meme.html motiph/spiked.fasta &> log
Skipping motif +1.
Skipping motif -1.
Using motif +2 of width 8.
Using motif -2 of width 8.
Computing q-values.
Estimating pi_0 from a uniformly sampled set of 5318 p-values.
Estimating pi_0.
Estimated pi_0=1
Using motif +3 of width 11.
Using motif -3 of width 11.
Computing q-values.
Estimating pi_0 from a uniformly sampled set of 5312 p-values.
Estimating pi_0.
Estimated pi_0=1
PASSED!
*******************************************************************************
Test fimo3 ...
fimo --oc results/fimo3 --psp fimo/GCN4_YPD.psp --prior-dist fimo/prior.dist.txt fimo/GCN4.meme fimo/GCN4_YPD.fasta &> log
Using motif +MA0303.1 of width 21.
Using motif -MA0303.1 of width 21.
Computing q-values.
Estimating pi_0 from a uniformly sampled set of 10000 p-values.
Estimating pi_0.
Estimated pi_0=1
PASSED!
*******************************************************************************
Test fimo4 ...
fimo --oc results/fimo4 --parse-genomic-coord --psp fimo/GCN4_YPD-genomic.psp --prior-dist fimo/prior.dist.txt fimo/GCN4.meme fimo/GCN4_YPD-genomic.fasta &> log
Using motif +MA0303.1 of width 21.
Using motif -MA0303.1 of width 21.
Computing q-values.
Estimating pi_0 from a uniformly sampled set of 10000 p-values.
Estimating pi_0.
Estimated pi_0=1
PASSED!

RUN: glam2
==========

*******************************************************************************
Test glam2_1 ...
glam2 -M -r 3 -n 100 -O results/glam2_1 p common/At.s &> log
The output directory 'results/glam2_1' already exists.
Its contents will be overwritten.
Run 1... 406 iterations
Run 2... 445 iterations
Run 3... 400 iterations

The given ghostscript "gs" is not an executable file.
The given convert "convert" is not an executable file.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
PASSED!

RUN: glam2scan
==============

*******************************************************************************
Test glam2scan1 ...
glam2scan -O results/glam2scan1 p glam2/glam2.txt common/At.s &> log
The output directory 'results/glam2scan1' already exists.
Its contents will be overwritten.
PASSED!

RUN: gomo
=========

*******************************************************************************
Test gomo1 ...
gomo --seed 1 --nostatus --verbosity 1 --oc results/gomo1 --motifs gomo/motif.meme gomo/GO2Gene.map.csv gomo/ama.nozscoring.xml &> log
The given ghostscript "gs" is not an executable file.
The given convert "convert" is not an executable file.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
PASSED!
*******************************************************************************
Test gomo2 ...
gomo --gs --seed 1 --nostatus --verbosity 1 --oc results/gomo2 --motifs gomo/motif.meme gomo/GO2Gene.map.csv gomo/ama.zscoring.xml gomo/ama.nozscoring.xml &> log
The given ghostscript "gs" is not an executable file.
The given convert "convert" is not an executable file.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
PASSED!

RUN: mast
=========

*******************************************************************************
Test mast1 ...
mast meme/meme.crp0.oops common/crp0.s -oc results/mast1 -nostatus &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast2 ...
mast meme/meme.crp0.zoops common/crp0.s -oc results/mast2 -nostatus &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast3 ...
mast meme/meme.crp0.tcm common/crp0.s -oc results/mast3 -nostatus &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast4 ...
mast meme/meme.INO_up800.oops common/INO_up800.s -oc results/mast4 -nostatus &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast5 ...
mast meme/meme.INO_up800.zoops common/INO_up800.s -oc results/mast5 -nostatus &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast6 ...
mast meme/meme.INO_up800.tcm common/INO_up800.s -oc results/mast6 -nostatus &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast7 ...
mast meme/meme.farntrans5.oops common/farntrans5.s -oc results/mast7 -nostatus &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast8 ...
mast meme/meme.farntrans5.zoops common/farntrans5.s -oc results/mast8 -nostatus &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast9 ...
mast meme/meme.farntrans5.tcm common/farntrans5.s -oc results/mast9 -nostatus &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast10 ...
mast meme/meme.lipocalin.oops common/lipocalin.s -oc results/mast10 -nostatus &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast11 ...
mast meme/meme.lipocalin.zoops common/lipocalin.s -oc results/mast11 -nostatus &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast12 ...
mast meme/meme.lipocalin.tcm common/lipocalin.s -oc results/mast12 -nostatus &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast13 ...
mast meme/meme.adh.oops common/adh.s -oc results/mast13 -nostatus &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast14 ...
mast meme/meme.adh.oops - -oc results/mast14 -nostatus -df stdin -dna -seqp < common/mini-drosoph.s &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast15 ...
mast meme/meme.adh.zoops common/adh.s -oc results/mast15 -nostatus &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast16 ...
mast meme/meme.adh.zoops - -oc results/mast16 -nostatus -df stdin -dna -seqp < common/mini-drosoph.s &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast17 ...
mast meme/meme.adh.tcm common/adh.s -oc results/mast17 -nostatus &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!
*******************************************************************************
Test mast18 ...
mast meme/meme.adh.tcm - -oc results/mast18 -nostatus -df stdin -dna -seqp < common/mini-drosoph.s &> log
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_html: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_html exited abnormally and may have failed to create HTML output.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/mast_xml_to_txt: perl: bad interpreter: No such file or directory
Warning: mast_xml_to_txt exited abnormally and may have failed to create text output.
PASSED!

RUN: mcast
==========

*******************************************************************************
Test mcast1 ...
mcast -oc results/mcast1 meme/meme.lex0.zoops common/lex0.s &> log
Creating HMM from motif array.
Building HMM: (0) 1 2-3-4-5-6-7-8-9-10-11-12-13-14-15-16-17-18-19-20-21 | (22)
Reading sequences in blocks of 434782 characters.
Warning: Cannot estimate pi_0 accurately from fewer than 100 p-values.         total p-values = 14. Using pi_zero = 1.0.
User time for computation: 0.002 seconds
System time for computation: 0 seconds
User time for output: 0.002 seconds
System time for output: 0.001 seconds
Total user time: 0.004 seconds
Total system time: 0.001 seconds
PASSED!

RUN: meme
=========

*******************************************************************************
Test meme1 ...
meme common/crp0.s -oc results/meme1 -mod oops -dna -revcomp -nmotifs 2 -minw 8 -nostatus &> log
The given ghostscript "gs" is not an executable file.
The given convert "convert" is not an executable file.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/meme_xml_to_html: perl: bad interpreter: No such file or directory
Warning: meme_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
meme exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test meme2 ...
meme common/crp0.s -oc results/meme2 -mod zoops -dna -revcomp -nmotifs 2 -minw 8 -nostatus &> log
The given ghostscript "gs" is not an executable file.
The given convert "convert" is not an executable file.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/meme_xml_to_html: perl: bad interpreter: No such file or directory
Warning: meme_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
meme exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test meme3 ...
meme common/crp0.s -oc results/meme3 -mod tcm -dna -revcomp -nmotifs 2 -minw 8 -nostatus &> log
The given ghostscript "gs" is not an executable file.
The given convert "convert" is not an executable file.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/meme_xml_to_html: perl: bad interpreter: No such file or directory
Warning: meme_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
meme exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test meme4 ...
meme common/adh.s -oc results/meme4 -mod oops -protein -nmotifs 2 -minw 8 -nostatus &> log
The given ghostscript "gs" is not an executable file.
The given convert "convert" is not an executable file.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/meme_xml_to_html: perl: bad interpreter: No such file or directory
Warning: meme_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
meme exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test meme5 ...
meme common/adh.s -oc results/meme5 -mod zoops -protein -nmotifs 2 -minw 8 -nostatus &> log
The given ghostscript "gs" is not an executable file.
The given convert "convert" is not an executable file.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/meme_xml_to_html: perl: bad interpreter: No such file or directory
Warning: meme_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
meme exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test meme6 ...
meme common/adh.s -oc results/meme6 -mod tcm -protein -nmotifs 2 -minw 8 -nostatus &> log
The given ghostscript "gs" is not an executable file.
The given convert "convert" is not an executable file.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/meme_xml_to_html: perl: bad interpreter: No such file or directory
Warning: meme_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
meme exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test meme_psp ...
meme common/psp_test.s -psp common/psp_test.psp -minsites 5 -dna -revcomp -minw 7 -maxw 12 -nostatus -text 1> results/meme7/meme_iek4w_stdout 2> log
PASSED!

RUN: motif-in
=============

*******************************************************************************
Generating meme motifs...
meme -oc results/motif.meme.crp0 -nostatus -dna -nmotifs 3 common/crp0.s
The given ghostscript "gs" is not an executable file.
The given convert "convert" is not an executable file.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/meme_xml_to_html: perl: bad interpreter: No such file or directory
Warning: meme_xml_to_html exited abnormally and may have failed to create HTML output.
*******************************************************************************
Test motif-in.meme.crp0.text ...
SKIPPED!
*******************************************************************************
Test motif-in.meme.crp0.xml ...
SKIPPED!
*******************************************************************************
Test motif-in.meme.crp0.html ...
SKIPPED!
*******************************************************************************
Generating meme motifs...
meme -oc results/motif.meme.lipocalin -nostatus -protein -nmotifs 3 common/lipocalin.s
The given ghostscript "gs" is not an executable file.
The given convert "convert" is not an executable file.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/meme_xml_to_html: perl: bad interpreter: No such file or directory
Warning: meme_xml_to_html exited abnormally and may have failed to create HTML output.
*******************************************************************************
Test motif-in.meme.lipocalin.text ...
SKIPPED!
*******************************************************************************
Test motif-in.meme.lipocalin.xml ...
SKIPPED!
*******************************************************************************
Test motif-in.meme.lipocalin.html ...
SKIPPED!
*******************************************************************************
Generating meme motifs...
meme -oc results/motif.meme.puf3p -nostatus -rna -nmotifs 3 common/Puf3p-20.s
The given ghostscript "gs" is not an executable file.
The given convert "convert" is not an executable file.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/meme_xml_to_html: perl: bad interpreter: No such file or directory
Warning: meme_xml_to_html exited abnormally and may have failed to create HTML output.
*******************************************************************************
Test motif-in.meme.puf3p.text ...
SKIPPED!
*******************************************************************************
Test motif-in.meme.puf3p.xml ...
SKIPPED!
*******************************************************************************
Test motif-in.meme.puf3p.html ...
SKIPPED!
*******************************************************************************
Generating meme motifs...
meme -oc results/motif.meme.crp0.extdna -nostatus -alph common/extended_dna.alph -nmotifs 3 common/crp0.s
The given ghostscript "gs" is not an executable file.
The given convert "convert" is not an executable file.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
Warning: Can not convert EPS file to PNG as no install of Image Magick or Ghostscript is usable.
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/meme_xml_to_html: perl: bad interpreter: No such file or directory
Warning: meme_xml_to_html exited abnormally and may have failed to create HTML output.
*******************************************************************************
Test motif-in.meme.crp0.extdna.text ...
SKIPPED!
*******************************************************************************
Test motif-in.meme.crp0.extdna.xml ...
SKIPPED!
*******************************************************************************
Test motif-in.meme.crp0.extdna.html ...
SKIPPED!
*******************************************************************************
Generating dreme motifs...
dreme -oc results/motif.dreme.klf1 -dna -m 3 -p common/Klf1.s
Traceback (most recent call last):
  File "/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/dreme", line 21, in <module>
    shuffle =  __import__('fasta-dinucleotide-shuffle')
ImportError: No module named fasta-dinucleotide-shuffle
*******************************************************************************
Test motif-in.dreme.klf1.text ...
SKIPPED!
*******************************************************************************
Test motif-in.dreme.klf1.xml ...
SKIPPED!
*******************************************************************************
Test motif-in.dreme.klf1.html ...
SKIPPED!
*******************************************************************************
Generating dreme motifs...
dreme -oc results/motif.dreme.klf1.extdna -alph common/extended_dna.alph -m 3 -p common/Klf1.s
Traceback (most recent call last):
  File "/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/dreme", line 21, in <module>
    shuffle =  __import__('fasta-dinucleotide-shuffle')
ImportError: No module named fasta-dinucleotide-shuffle
*******************************************************************************
Test motif-in.dreme.klf1.extdna.text ...
SKIPPED!
*******************************************************************************
Test motif-in.dreme.klf1.extdna.xml ...
SKIPPED!
*******************************************************************************
Test motif-in.dreme.klf1.extdna.html ...
SKIPPED!
*******************************************************************************
Generating dreme motifs...
dreme -oc results/motif.dreme.puf3p -rna -m 3 -p common/Puf3p.s
Traceback (most recent call last):
  File "/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/dreme", line 21, in <module>
    shuffle =  __import__('fasta-dinucleotide-shuffle')
ImportError: No module named fasta-dinucleotide-shuffle
*******************************************************************************
Test motif-in.dreme.puf3p.text ...
SKIPPED!
*******************************************************************************
Test motif-in.dreme.puf3p.xml ...
SKIPPED!
*******************************************************************************
Test motif-in.dreme.puf3p.html ...
SKIPPED!

RUN: motiph
===========

*******************************************************************************
Test motiph1 ...
motiph --seed 0 --bg 2 --pseudocount 0.01 --oc results/motiph1 motiph/spiked.aln motiph/yeast.tree motiph/MCM1.meme.html &> log
Using motif +1 of width 13.
Read alignment from motiph/spiked.aln.
Trimmed tree: (Sbay:0.33300,(Smik:0.21600,(Spar:0.10500,Scer:0.14600):0.07700):0.08600);
Computing q-values.
Estimating pi_0 from all 879 observed p-values.
Estimating pi_0.
Estimated pi_0=0.859743
Using motif -1 of width 13.
Read alignment from motiph/spiked.aln.
Trimmed tree: (Sbay:0.33300,(Smik:0.21600,(Spar:0.10500,Scer:0.14600):0.07700):0.08600);
Computing q-values.
Estimating pi_0 from all 879 observed p-values.
Estimating pi_0.
Estimated pi_0=0.813862
Total number of positions scored: 1758
PASSED!
*******************************************************************************
Test motiph2 ...
motiph --seed 0 --bg 2 --pseudocount 0.01 --oc results/motiph2 --output-pthresh 1 --motif 2 --motif 3 motiph/spiked.aln motiph/yeast.tree common/crp0.meme.html &> log
Using motif +2 of width 8.
Read alignment from motiph/spiked.aln.
Trimmed tree: (Sbay:0.33300,(Smik:0.21600,(Spar:0.10500,Scer:0.14600):0.07700):0.08600);
Computing q-values.
Estimating pi_0 from all 1243 observed p-values.
Estimating pi_0.
Estimated pi_0=1
Using motif -2 of width 8.
Read alignment from motiph/spiked.aln.
Trimmed tree: (Sbay:0.33300,(Smik:0.21600,(Spar:0.10500,Scer:0.14600):0.07700):0.08600);
Computing q-values.
Estimating pi_0 from all 1243 observed p-values.
Estimating pi_0.
Estimated pi_0=1
Using motif +3 of width 11.
Read alignment from motiph/spiked.aln.
Trimmed tree: (Sbay:0.33300,(Smik:0.21600,(Spar:0.10500,Scer:0.14600):0.07700):0.08600);
Computing q-values.
Estimating pi_0 from all 1014 observed p-values.
Estimating pi_0.
Estimated pi_0=1
Using motif -3 of width 11.
Read alignment from motiph/spiked.aln.
Trimmed tree: (Sbay:0.33300,(Smik:0.21600,(Spar:0.10500,Scer:0.14600):0.07700):0.08600);
Computing q-values.
Estimating pi_0 from all 1014 observed p-values.
Estimating pi_0.
Estimated pi_0=1
Total number of positions scored: 4514
PASSED!

RUN: pspgen
===========

*******************************************************************************
Test psp-gen1 ...
psp-gen -revcomp -pos psp-gen/one-peak-dna.fasta -neg psp-gen/all-A.fasta 1> results/pspgen1/psp-gen_QIlsd_stdout 2> log
Error parsing test /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts/pspgen.test: Exec failed at /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/ExecUtils.pm line 157.

Can't exec "/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/psp-gen": No such file or directory at /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/ExecUtils.pm line 156.
-------------------------------------------------------------------------------
1,4c1
< >nopeak 4 scaledmin = 0.1 scaledmax = 0.9
< 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0 0 0
< >peak 4 scaledmin = 0.1 scaledmax = 0.9
< 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.01108138 0.01108138 0.01108138 0.1181104 0.1181104 0.1181104 0.1181104 0.1181104 0.1181104 0.1181104 0 0 0
---
> [35mERROR: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts/pspgen.test[0m (FAULT IN TEST!)
FAILED!
*******************************************************************************
Test psp-gen2 ...
psp-gen -protein -maxrange -triples -pos psp-gen/one-peak-protein.fasta -neg psp-gen/all-A.fasta 1> results/pspgen2/psp-gen_c1gk5_stdout 2> log
Error parsing test /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts/pspgen.test: Exec failed at /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/ExecUtils.pm line 157.

Can't exec "/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/psp-gen": No such file or directory at /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/ExecUtils.pm line 156.
-------------------------------------------------------------------------------
1,4c1
< >nopeak 11 scaledmin = 0.1 scaledmax = 0.9
< 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0.01010101 0 0 0 0 0 0 0 0 0 0
< >peak 11 scaledmin = 0.1 scaledmax = 0.9
< 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.001235534 0.009026428 0.1000783 0.1000783 0.1000783 0.1000783 0.1000783 0.1000783 0.1000783 0.1000783 0.08038493 0 0 0 0 0 0 0 0 0 0
---
> [35mERROR: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts/pspgen.test[0m (FAULT IN TEST!)
FAILED!
*******************************************************************************
Test psp-gen3 ...
psp-gen -alph common/extended_dna.alph -revcomp -pos psp-gen/one-peak-dna.fasta -neg psp-gen/all-A.fasta 1> results/pspgen1/psp-gen_oDXr2_stdout 2> log
Error parsing test /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts/pspgen.test: Exec failed at /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/ExecUtils.pm line 157.

Can't exec "/var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/psp-gen": No such file or directory at /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/ExecUtils.pm line 156.
-------------------------------------------------------------------------------
1,4c1
< >nopeak 4 scaledmin = 0.1 scaledmax = 0.9
< 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0.009433962 0 0 0
< >peak 4 scaledmin = 0.1 scaledmax = 0.9
< 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.001458154 0.01108138 0.01108138 0.01108138 0.1181104 0.1181104 0.1181104 0.1181104 0.1181104 0.1181104 0.1181104 0 0 0
---
> [35mERROR: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/tests/scripts/pspgen.test[0m (FAULT IN TEST!)
FAILED!

RUN: qvalue
===========

*******************************************************************************
Test qvalue1 ...
qvalue --header 1 --append --column 2 --seed 7718 qvalue/uniform.txt 1> results/qvalue1/qvalue__8c5P_stdout 2> log
Read 1000 values from qvalue/uniform.txt.
PASSED!

RUN: spamo
==========

*******************************************************************************
Test spamo1 ...
spamo -oc results/spamo1 -verbosity 1 -margin 20 -shared 1 spamo/limits.fasta spamo/primary.meme spamo/secondary.meme &> log
PASSED!
*******************************************************************************
Test spamo2 ...
spamo -oc results/spamo2 -verbosity 1 -margin 20 -shared 1 spamo/random.fasta spamo/primary.meme spamo/secondary.meme &> log
PASSED!

RUN: tomtom
===========

*******************************************************************************
Test tomtom_allr ...
tomtom -verbosity 1 -dist allr -oc results/tomtom1 -incomplete-scores common/sample.meme common/sample.meme &> log
Warning: Target database size too small (5). Provide at least 50 motifs for accurate p-value computation
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/tomtom_xml_to_html: perl: bad interpreter: No such file or directory
Warning: tomtom_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
tomtom exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test tomtom_ed ...
tomtom -verbosity 1 -dist ed -oc results/tomtom2 -incomplete-scores common/sample.meme common/sample.meme &> log
Warning: Target database size too small (5). Provide at least 50 motifs for accurate p-value computation
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/tomtom_xml_to_html: perl: bad interpreter: No such file or directory
Warning: tomtom_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
tomtom exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test tomtom_kullback ...
tomtom -verbosity 1 -dist kullback -oc results/tomtom3 -incomplete-scores common/sample.meme common/sample.meme &> log
Warning: Target database size too small (5). Provide at least 50 motifs for accurate p-value computation
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/tomtom_xml_to_html: perl: bad interpreter: No such file or directory
Warning: tomtom_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
tomtom exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test tomtom_pearson ...
tomtom -verbosity 1 -dist pearson -oc results/tomtom4 -incomplete-scores common/sample.meme common/sample.meme &> log
Warning: Target database size too small (5). Provide at least 50 motifs for accurate p-value computation
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/tomtom_xml_to_html: perl: bad interpreter: No such file or directory
Warning: tomtom_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
tomtom exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test tomtom_sandelin ...
tomtom -verbosity 1 -dist sandelin -oc results/tomtom5 -incomplete-scores common/sample.meme common/sample.meme &> log
Warning: Target database size too small (5). Provide at least 50 motifs for accurate p-value computation
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/tomtom_xml_to_html: perl: bad interpreter: No such file or directory
Warning: tomtom_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
tomtom exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test tomtom_blic1 ...
tomtom -verbosity 1 -dist blic1 -oc results/tomtom6 -incomplete-scores common/sample.meme common/sample.meme &> log
Warning: Target database size too small (5). Provide at least 50 motifs for accurate p-value computation
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/tomtom_xml_to_html: perl: bad interpreter: No such file or directory
Warning: tomtom_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
tomtom exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test tomtom_blic5 ...
tomtom -verbosity 1 -dist blic5 -oc results/tomtom7 -incomplete-scores common/sample.meme common/sample.meme &> log
Warning: Target database size too small (5). Provide at least 50 motifs for accurate p-value computation
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/tomtom_xml_to_html: perl: bad interpreter: No such file or directory
Warning: tomtom_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
tomtom exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test tomtom_allr_cs ...
tomtom -verbosity 1 -dist allr -oc results/tomtom8 common/sample.meme common/sample.meme &> log
Warning: Target database size too small (5). Provide at least 50 motifs for accurate p-value computation
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/tomtom_xml_to_html: perl: bad interpreter: No such file or directory
Warning: tomtom_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
tomtom exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test tomtom_ed_cs ...
tomtom -verbosity 1 -dist ed -oc results/tomtom9 common/sample.meme common/sample.meme &> log
Warning: Target database size too small (5). Provide at least 50 motifs for accurate p-value computation
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/tomtom_xml_to_html: perl: bad interpreter: No such file or directory
Warning: tomtom_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
tomtom exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test tomtom_kullback_cs ...
tomtom -verbosity 1 -dist kullback -oc results/tomtom10 common/sample.meme common/sample.meme &> log
Warning: Target database size too small (5). Provide at least 50 motifs for accurate p-value computation
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/tomtom_xml_to_html: perl: bad interpreter: No such file or directory
Warning: tomtom_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
tomtom exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test tomtom_pearson_cs ...
tomtom -verbosity 1 -dist pearson -oc results/tomtom11 common/sample.meme common/sample.meme &> log
Warning: Target database size too small (5). Provide at least 50 motifs for accurate p-value computation
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/tomtom_xml_to_html: perl: bad interpreter: No such file or directory
Warning: tomtom_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
tomtom exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test tomtom_sandelin_cs ...
tomtom -verbosity 1 -dist sandelin -oc results/tomtom12 common/sample.meme common/sample.meme &> log
Warning: Target database size too small (5). Provide at least 50 motifs for accurate p-value computation
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/tomtom_xml_to_html: perl: bad interpreter: No such file or directory
Warning: tomtom_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
tomtom exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test tomtom_blic1_cs ...
tomtom -verbosity 1 -dist blic1 -oc results/tomtom13 common/sample.meme common/sample.meme &> log
Warning: Target database size too small (5). Provide at least 50 motifs for accurate p-value computation
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/tomtom_xml_to_html: perl: bad interpreter: No such file or directory
Warning: tomtom_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
tomtom exited with value 1 indicating failure.
FAILED!
*******************************************************************************
Test tomtom_blic5_cs ...
tomtom -verbosity 1 -dist blic5 -oc results/tomtom14 common/sample.meme common/sample.meme &> log
Warning: Target database size too small (5). Provide at least 50 motifs for accurate p-value computation
sh: /var/tmp/portage/sci-biology/meme-4.11.2_p2/work/meme_4.11.2/scripts/tomtom_xml_to_html: perl: bad interpreter: No such file or directory
Warning: tomtom_xml_to_html exited abnormally and may have failed to create HTML output.
-------------------------------------------------------------------------------
tomtom exited with value 1 indicating failure.
FAILED!