sys-cluster:openmpi-2.0.1:20161213-050603.log

sys-cluster:openmpi-2.0.1:20161213-050603.log (text/plain), 63.43 KB, created by Toralf Förster on 2016-12-13 08:35:12 UTC

 * Package:    sys-cluster/openmpi-2.0.1
 * Repository: gentoo
 * Maintainer: [e-mail] [e-mail]
 * USE:        abi_x86_64 amd64 cxx elibc_glibc fortran ipv6 kernel_linux userland_GNU
 * FEATURES:   preserve-libs sandbox userpriv usersandbox
 * Using following Fortran compiler:
 *   F77: x86_64-pc-linux-gnu-gfortran
 *   FC:  x86_64-pc-linux-gnu-gfortran
 * 
 * OpenMPI has an overwhelming count of configuration options.
 * Don't forget the EXTRA_ECONF environment variable can let you
 * specify configure options if you find them necessary.
 * 
>>> Unpacking source...
>>> Unpacking openmpi-2.0.1.tar.bz2 to /var/tmp/portage/sys-cluster/openmpi-2.0.1/work
>>> Source unpacked in /var/tmp/portage/sys-cluster/openmpi-2.0.1/work
>>> Preparing source in /var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1 ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1 ...
 * abi_x86_64.amd64: running multilib-minimal_abi_src_configure
 * econf: updating openmpi-2.0.1/opal/mca/pmix/pmix112/pmix/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating openmpi-2.0.1/opal/mca/pmix/pmix112/pmix/config/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating openmpi-2.0.1/opal/mca/event/libevent2022/libevent/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating openmpi-2.0.1/opal/mca/event/libevent2022/libevent/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating openmpi-2.0.1/ompi/mca/io/romio314/romio/confdb/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating openmpi-2.0.1/ompi/mca/io/romio314/romio/confdb/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating openmpi-2.0.1/config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating openmpi-2.0.1/config/config.guess with /usr/share/gnuconfig/config.guess
/var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/openmpi-2.0.1 --htmldir=/usr/share/doc/openmpi-2.0.1/html --libdir=/usr/lib64 --sysconfdir=/etc/openmpi --enable-pretty-print-stacktrace --enable-orterun-prefix-by-default --with-hwloc=/usr --with-libltdl=/usr --with-libevent=/usr --enable-mpi-fortran=all --enable-mpi-cxx --without-cma --without-cuda --disable-io-romio --disable-heterogeneous --enable-ipv6 --disable-java --disable-mpi-java --disable-mpi-thread-multiple --without-verbs --without-knem --without-psm --disable-openib-control-hdr-padding --disable-openib-connectx-xrc --disable-openib-rdmacm --disable-openib-udcm --disable-openib-dynamic-sl --disable-btl-openib-failover --without-tm --without-slurm

============================================================================
== Configuring Open MPI
============================================================================

*** Startup tests
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking target system type... x86_64-pc-linux-gnu
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for a BSD-compatible install... /usr/lib/portage/python2.7/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for style of include used by make... GNU
checking whether make supports nested variables... yes
checking whether UID '250' is supported by ustar format... yes
checking whether GID '250' is supported by ustar format... yes
checking how to create a ustar tar archive... gnutar
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking whether make supports nested variables... (cached) yes

*** Checking versions
checking for repo version... v2.0.0-257-gee86e07
checking Open MPI version... 2.0.1
checking Open MPI release date... Sep 02, 2016
checking Open MPI repository version... v2.0.0-257-gee86e07
checking for repo version... v2.0.0-257-gee86e07
checking Open MPI Run-Time Environment version... 2.0.1
checking Open MPI Run-Time Environment release date... Sep 02, 2016
checking Open MPI Run-Time Environment repository version... v2.0.0-257-gee86e07
checking for repo version... v2.0.0-257-gee86e07
checking Open SHMEM version... 2.0.1
checking Open SHMEM release date... Sep 02, 2016
checking Open SHMEM repository version... v2.0.0-257-gee86e07
checking for repo version... v2.0.0-257-gee86e07
checking Open Portable Access Layer version... 2.0.1
checking Open Portable Access Layer release date... Sep 02, 2016
checking Open Portable Access Layer repository version... v2.0.0-257-gee86e07
checking for bootstrap Autoconf version... 2.69
checking for bootstrap Automake version... 1.15
checking for boostrap Libtool version... 2.4.6

*** Initialization, setup
configure: builddir: /var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1-abi_x86_64.amd64
configure: srcdir: /var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1
configure: Detected VPATH build
installing to directory "/usr"

*** OPAL Configuration options
checking if want to run code coverage... no
checking if want to compile with branch probabilities... no
checking if want to debug memory usage... no
checking if want to profile memory usage... no
checking if want developer-level compiler pickyness... no
checking if want developer-level debugging code... no
checking if want to developer-level timing framework... no
checking if want to install project-internal header files... no
checking if want pretty-print stacktrace... yes
checking if want pty support... yes
checking if want weak symbol support... yes
checking if want dlopen support... yes
checking if want heterogeneous support... no
checking if word-sized integers must be word-size aligned... no
checking if want IPv6 support... yes
checking if want package/brand string... Open MPI portage@mr-fox Distribution
checking if want ident string... 2.0.1
checking if want to use an alternative checksum algo for messages... no
checking maximum length of processor name... 256
checking maximum length of error string... 256
checking maximum length of object name... 64
checking maximum length of info key... 36
checking maximum length of info val... 256
checking maximum length of port name... 1024
checking maximum length of datarep string... 128
checking if want getpwuid support... yes
checking __NetBSD__... no
checking __FreeBSD__... no
checking __OpenBSD__... no
checking __DragonFly__... no
checking __386BSD__... no
checking __bsdi__... no
checking __APPLE__... no
checking __linux__... yes
checking __sun__... no
checking __sun... no
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking netinet/in.h usability... yes
checking netinet/in.h presence... yes
checking for netinet/in.h... yes
checking netinet/tcp.h usability... yes
checking netinet/tcp.h presence... yes
checking for netinet/tcp.h... yes
checking for struct sockaddr_in... yes
checking if --with-cuda is set... not set (--with-cuda=no)
checking whether CU_POINTER_ATTRIBUTE_SYNC_MEMOPS is declared... no
checking whether cuPointerGetAttributes is declared... no
checking if have cuda support... no

*** ORTE Configuration options
checking if want orterun "--prefix" behavior to be enabled by default... yes
checking if want orte static ports... yes

*** OMPI Configuration options
checking if want compile-time warnings inside of mpi.h... yes
checking if want sparse process groups... no
checking if want peruse support... no
checking if want Fortran MPI bindings... all (usempif08)
checking if want C++ bindings... yes
checking if want MPI::SEEK_SET support... yes
checking if want run-time MPI parameter checking... runtime
checking which 'use mpi_f08' implementation to use... regular (no subarray support)

*** OSHMEM Configuration options
checking if want oshmem... yes
checking if want SGI/Quadrics compatibility mode... yes
checking if want OSHMEM API parameter checking... always
checking for on_exit... yes
checking if want pshmem... yes
checking if want to build OSHMEM fortran bindings... yes
checking if want wrapper compiler rpath support... yes

============================================================================
== Compiler and preprocessor tests
============================================================================

*** C compiler and preprocessor
checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed
checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... (cached) yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C99... none needed
checking for the C compiler vendor... gnu
checking for ANSI C header files... (cached) yes
checking if x86_64-pc-linux-gnu-gcc supports -finline-functions... yes
checking if x86_64-pc-linux-gnu-gcc supports -fno-strict-aliasing... yes
configure: WARNING:  -fno-strict-aliasing has been added to CFLAGS
checking if x86_64-pc-linux-gnu-gcc supports __builtin_expect... yes
checking if x86_64-pc-linux-gnu-gcc supports __builtin_prefetch... yes
checking if x86_64-pc-linux-gnu-gcc supports __builtin_clz... yes
checking for C optimization flags... -DNDEBUG -march=native -O2 -pipe -finline-functions -fno-strict-aliasing
checking for Interix environment... no
checking for C ident string support... #ident
checking for int8_t... yes
checking for uint8_t... yes
checking for int16_t... yes
checking for uint16_t... yes
checking for int32_t... yes
checking for uint32_t... yes
checking for int64_t... yes
checking for uint64_t... yes
checking for int128_t... no
checking for __int128... yes
checking for uint128_t... no
checking for long long... yes
checking for __float128... yes
checking for long double... yes
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking for float _Complex... yes
checking for double _Complex... yes
checking for long double _Complex... yes
checking for intptr_t... yes
checking for uintptr_t... yes
checking for mode_t... yes
checking for ssize_t... yes
checking for ptrdiff_t... yes
checking size of char... 1
checking size of short... 2
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of float... 4
checking size of double... 8
checking size of long double... 16
checking size of __float128... 16
checking size of float _Complex... 8
checking size of double _Complex... 16
checking size of long double _Complex... 32
checking size of void *... 8
checking size of size_t... 8
checking size of ssize_t... 8
checking size of ptrdiff_t... 8
checking size of wchar_t... 4
checking size of pid_t... 4
checking alignment of _Bool... 1
checking alignment of int8_t... 1
checking alignment of int16_t... 2
checking alignment of int32_t... 4
checking alignment of int64_t... 8
checking alignment of char... 1
checking alignment of short... 2
checking alignment of wchar_t... 4
checking alignment of int... 4
checking alignment of long... 8
checking alignment of long long... 8
checking alignment of float... 4
checking alignment of double... 8
checking alignment of long double... 16
checking alignment of __float128... 16
checking alignment of float _Complex... 4
checking alignment of double _Complex... 8
checking alignment of long double _Complex... 16
checking alignment of void *... 8
checking alignment of size_t... 8
checking for C bool type... no
checking size of _Bool... 1
checking for weak symbol support... yes
checking for macro weak symbol support... yes
checking for functional offsetof macro... yes

*** C++ compiler and preprocessor
checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of x86_64-pc-linux-gnu-g++... none
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking for the C++ compiler vendor... gnu
checking if x86_64-pc-linux-gnu-g++ supports -finline-functions... yes
configure: WARNING:  -finline-functions has been added to CXXFLAGS
checking if C and C++ are link compatible... yes
checking for C++ optimization flags... -DNDEBUG -march=native -O2 -pipe -finline-functions
checking size of bool... 1
checking alignment of bool... 1

*** C++ compiler and preprocessor
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... (cached) yes
checking dependency style of x86_64-pc-linux-gnu-g++... (cached) none
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking if C++ compiler works... yes
checking if x86_64-pc-linux-gnu-g++ supports -finline-functions... yes
configure: WARNING:  -finline-functions has been added to CXXFLAGS
checking if C and C++ are link compatible... (cached) yes
checking for C++ optimization flags... -DNDEBUG -march=native -O2 -pipe -finline-functions
checking size of bool... (cached) 1
checking alignment of bool... (cached) 1
checking if able to build the MPI C++ bindings... yes
checking for the C++ compiler vendor... (cached) gnu
checking if want C++ exception handling... no
checking for C++ template_repository_directory... not used
checking for C++ compiler template parameters... none needed
checking for C++ ident string support... #ident
checking if x86_64-pc-linux-gnu-g++ supports __builtin_expect... yes
checking if x86_64-pc-linux-gnu-g++ supports __builtin_prefetch... yes
checking if x86_64-pc-linux-gnu-g++ supports const_cast<> properly... yes

*** Compiler characteristics
checking for __attribute__... yes
checking for __attribute__(aligned)... yes
checking for __attribute__(always_inline)... yes
checking for __attribute__(cold)... yes
checking for __attribute__(const)... yes
checking for __attribute__(deprecated)... yes
checking for __attribute__(deprecated_argument)... yes
checking for __attribute__(format)... yes
checking for __attribute__(format_funcptr)... yes
checking for __attribute__(hot)... yes
checking for __attribute__(malloc)... yes
checking for __attribute__(may_alias)... yes
checking for __attribute__(no_instrument_function)... yes
checking for __attribute__(noinline)... yes
checking for __attribute__(nonnull)... yes
checking for __attribute__(noreturn)... yes
checking for __attribute__(noreturn_funcptr)... yes
checking for __attribute__(packed)... yes
checking for __attribute__(pure)... yes
checking for __attribute__(sentinel)... yes
checking for __attribute__(unused)... yes
checking for __attribute__(visibility)... yes
checking for __attribute__(warn_unused_result)... yes
checking for __attribute__(weak_alias)... yes
checking for __attribute__(destructor)... yes
checking for compiler familyid... 1
checking for compiler familyname... GNU
checking for compiler version... 328704
checking for compiler version_str... 5.4.0

*** Java compiler
checking Java support available... no

*** Java MPI bindings
checking if want Java bindings... no

*** OpenSHMEM profiling
checking if pshmem will be enabled... yes (weak symbols supported)

*** Assembler
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B
checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm
checking for fgrep... /bin/grep -F
checking if .proc/endp is needed... no
checking directive for setting text section... .text
checking directive for exporting symbols... .globl
checking for objdump... objdump
checking if .note.GNU-stack is needed... yes
checking suffix for labels... :
checking prefix for global symbol labels... 
checking prefix for lsym labels... .L
checking prefix for function in .type... @
checking if .size is needed... yes
checking if .align directive takes logarithmic value... no
checking if processor supports x86_64 16-byte compare-and-exchange... yes
checking if compiler correctly handles volatile 128bits... yes
checking if x86_64-pc-linux-gnu-gcc supports GCC inline assembly... yes
checking if x86_64-pc-linux-gnu-gcc supports DEC inline assembly... no
checking if x86_64-pc-linux-gnu-gcc supports XLC inline assembly... no
checking for assembly format... default-.text-.globl-:--.L-@-1-0-1-1-1
checking for assembly architecture... AMD64
checking for builtin atomics... BUILTIN_NO
checking for perl... perl
checking for pre-built assembly file... yes (atomic-amd64-linux.s)
checking for atomic assembly filename... atomic-amd64-linux.s

*** Fortran compiler
checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes
configure: WARNING: Open MPI now ignores the F77 and FFLAGS environment variables; only the FC and FCFLAGS environment variables are used.
checking whether ln -s works... yes
checking if Fortran compiler works... yes
checking for extra arguments to build a shared library... none needed
checking for x86_64-pc-linux-gnu-gfortran warnings flags... none
checking for Fortran flag to compile .f files... none
checking for Fortran flag to compile .f90 files... none
checking to see if Fortran compilers need additional linker flags... none
checking  external symbol convention... single underscore
checking if C and Fortran are link compatible... yes
checking to see if Fortran compiler likes the C++ exception flags... skipped (no C++ exceptions flags)
checking to see if mpifort compiler needs additional linker flags... none
checking if Fortran compiler supports CHARACTER... yes
checking size of Fortran CHARACTER... 1
checking for C type corresponding to CHARACTER... char
checking alignment of Fortran CHARACTER... 1
checking for corresponding KIND value of CHARACTER... C_SIGNED_CHAR
checking KIND value of Fortran C_SIGNED_CHAR... 1
checking if Fortran compiler supports LOGICAL... yes
checking size of Fortran LOGICAL... 4
checking for C type corresponding to LOGICAL... int
checking alignment of Fortran LOGICAL... 4
checking for corresponding KIND value of LOGICAL... C_INT
checking KIND value of Fortran C_INT... 4
checking if Fortran compiler supports LOGICAL*1... yes
checking size of Fortran LOGICAL*1... 1
checking for C type corresponding to LOGICAL*1... char
checking alignment of Fortran LOGICAL*1... 1
checking for corresponding KIND value of LOGICAL*1... C_SIGNED_CHAR
checking KIND value of Fortran C_SIGNED_CHAR... (cached) 1
checking if Fortran compiler supports LOGICAL*2... yes
checking size of Fortran LOGICAL*2... 2
checking for C type corresponding to LOGICAL*2... short
checking alignment of Fortran LOGICAL*2... 2
checking for corresponding KIND value of LOGICAL*2... C_SHORT
checking KIND value of Fortran C_SHORT... 2
checking if Fortran compiler supports LOGICAL*4... yes
checking size of Fortran LOGICAL*4... 4
checking for C type corresponding to LOGICAL*4... int
checking alignment of Fortran LOGICAL*4... 4
checking for corresponding KIND value of LOGICAL*4... C_INT
checking KIND value of Fortran C_INT... (cached) 4
checking if Fortran compiler supports LOGICAL*8... yes
checking size of Fortran LOGICAL*8... 8
checking for C type corresponding to LOGICAL*8... long long
checking alignment of Fortran LOGICAL*8... 8
checking for corresponding KIND value of LOGICAL*8... C_LONG_LONG
checking KIND value of Fortran C_LONG_LONG... 8
checking if Fortran compiler supports INTEGER... yes
checking size of Fortran INTEGER... 4
checking for C type corresponding to INTEGER... int
checking alignment of Fortran INTEGER... 4
checking for corresponding KIND value of INTEGER... C_INT
checking KIND value of Fortran C_INT... (cached) 4
checking if Fortran compiler supports INTEGER*1... yes
checking size of Fortran INTEGER*1... 1
checking for C type corresponding to INTEGER*1... char
checking alignment of Fortran INTEGER*1... 1
checking for corresponding KIND value of INTEGER*1... C_SIGNED_CHAR
checking KIND value of Fortran C_SIGNED_CHAR... (cached) 1
checking if Fortran compiler supports INTEGER*2... yes
checking size of Fortran INTEGER*2... 2
checking for C type corresponding to INTEGER*2... short
checking alignment of Fortran INTEGER*2... 2
checking for corresponding KIND value of INTEGER*2... C_SHORT
checking KIND value of Fortran C_SHORT... (cached) 2
checking if Fortran compiler supports INTEGER*4... yes
checking size of Fortran INTEGER*4... 4
checking for C type corresponding to INTEGER*4... int
checking alignment of Fortran INTEGER*4... 4
checking for corresponding KIND value of INTEGER*4... C_INT
checking KIND value of Fortran C_INT... (cached) 4
checking if Fortran compiler supports INTEGER*8... yes
checking size of Fortran INTEGER*8... 8
checking for C type corresponding to INTEGER*8... long long
checking alignment of Fortran INTEGER*8... 8
checking for corresponding KIND value of INTEGER*8... C_LONG_LONG
checking KIND value of Fortran C_LONG_LONG... (cached) 8
checking if Fortran compiler supports INTEGER*16... yes
checking size of Fortran INTEGER*16... 16
checking for C type corresponding to INTEGER*16... not found
configure: WARNING: *** Did not find corresponding C type
checking for corresponding KIND value of INTEGER*16... 0
checking KIND value of Fortran 0... 0
configure: WARNING: Compiler INTEGER*16 and  mismatch; MPI datatype unsupported
checking if Fortran compiler supports REAL... yes
checking size of Fortran REAL... 4
checking for C type corresponding to REAL... float
checking alignment of Fortran REAL... 4
checking for corresponding KIND value of REAL... C_FLOAT
checking KIND value of Fortran C_FLOAT... 4
checking if Fortran compiler supports REAL*2... no
checking if Fortran compiler supports REAL*4... yes
checking size of Fortran REAL*4... 4
checking for C type corresponding to REAL*4... float
checking alignment of Fortran REAL*4... 4
checking for corresponding KIND value of REAL*4... C_FLOAT
checking KIND value of Fortran C_FLOAT... (cached) 4
checking if Fortran compiler supports REAL*8... yes
checking size of Fortran REAL*8... 8
checking for C type corresponding to REAL*8... double
checking alignment of Fortran REAL*8... 8
checking for corresponding KIND value of REAL*8... C_DOUBLE
checking KIND value of Fortran C_DOUBLE... 8
checking if Fortran compiler supports REAL*16... yes
checking size of Fortran REAL*16... 16
checking for C type corresponding to REAL*16... long double
checking alignment of Fortran REAL*16... 16
checking for corresponding KIND value of REAL*16... C_LONG_DOUBLE
checking KIND value of Fortran C_LONG_DOUBLE... 10
checking for C type matching bit representation of REAL*16... pending
checking if long double == REAL*16... no
checking if gnu compiler __float128 == REAL*16... works!
checking for C type matching bit representation of REAL*16... yes
checking if Fortran compiler supports DOUBLE PRECISION... yes
checking size of Fortran DOUBLE PRECISION... 8
checking for C type corresponding to DOUBLE PRECISION... double
checking alignment of Fortran DOUBLE PRECISION... 8
checking for corresponding KIND value of DOUBLE PRECISION... C_DOUBLE
checking KIND value of Fortran C_DOUBLE... (cached) 8
checking if Fortran compiler supports COMPLEX... yes
checking size of Fortran COMPLEX... 8
checking for C type corresponding to COMPLEX... float _Complex
checking alignment of Fortran COMPLEX... 4
checking for corresponding KIND value of COMPLEX... C_FLOAT_COMPLEX
checking KIND value of Fortran C_FLOAT_COMPLEX... 4
checking if Fortran compiler supports COMPLEX*4... no
checking if Fortran compiler supports COMPLEX*8... yes
checking size of Fortran COMPLEX*8... 8
checking for C type corresponding to COMPLEX*8... float _Complex
checking alignment of Fortran COMPLEX*8... 4
checking for corresponding KIND value of COMPLEX*8... C_FLOAT_COMPLEX
checking KIND value of Fortran C_FLOAT_COMPLEX... (cached) 4
checking if Fortran compiler supports COMPLEX*16... yes
checking size of Fortran COMPLEX*16... 16
checking for C type corresponding to COMPLEX*16... double _Complex
checking alignment of Fortran COMPLEX*16... 8
checking for corresponding KIND value of COMPLEX*16... C_DOUBLE_COMPLEX
checking KIND value of Fortran C_DOUBLE_COMPLEX... 8
checking if Fortran compiler supports COMPLEX*32... yes
checking size of Fortran COMPLEX*32... 32
checking for C type corresponding to COMPLEX*32... long double _Complex
checking alignment of Fortran COMPLEX*32... 16
checking for corresponding KIND value of COMPLEX*32... C_LONG_DOUBLE_COMPLEX
checking KIND value of Fortran C_LONG_DOUBLE_COMPLEX... 10
checking if Fortran compiler supports DOUBLE COMPLEX... yes
checking size of Fortran DOUBLE COMPLEX... 16
checking for C type corresponding to DOUBLE COMPLEX... double _Complex
checking alignment of Fortran DOUBLE COMPLEX... 8
checking for corresponding KIND value of DOUBLE COMPLEX... C_DOUBLE_COMPLEX
checking KIND value of Fortran C_DOUBLE_COMPLEX... (cached) 8
checking for max Fortran MPI handle index... 2147483647
checking Fortran value for .TRUE. logical type... 1
checking for correct handling of Fortran logical arrays... yes
checking max supported Fortran array rank... 7
checking for the value of MPI_STATUS_SIZE... 6 Fortran INTEGERs
checking KIND value of Fortran C_INT16_T... 2
checking KIND value of Fortran C_INT32_T... 4
checking KIND value of Fortran C_INT64_T... 8
checking if building Fortran mpif.h bindings... yes
checking if Fortran compiler supports INTERFACE... yes
checking if Fortran compiler supports ISO_FORTRAN_ENV... yes
checking if Fortran compiler supports STORAGE_SIZE for relevant types... yes
checking for Fortran compiler module include flag... -I
checking Fortran compiler ignore TKR syntax... not cached; checking variants
checking for Fortran compiler support of TYPE(*), DIMENSION(*)... no
checking for Fortran compiler support of !GCC$ ATTRIBUTES NO_ARG_CHECK... yes
checking Fortran compiler ignore TKR syntax... 1:type(*), dimension(*):!GCC$ ATTRIBUTES NO_ARG_CHECK ::
checking if Fortran compiler supports ISO_C_BINDING... yes
checking if building Fortran 'use mpi' bindings... yes
checking if Fortran compiler supports SUBROUTINE BIND(C)... yes
checking if Fortran compiler supports TYPE, BIND(C)... yes
checking if Fortran compiler supports TYPE(type), BIND(C, NAME="name")... yes
checking if Fortran compiler supports PROCEDURE... yes
checking if Fortran compiler supports USE...ONLY... yes
checking if Fortran compiler supports optional arguments... yes
checking if Fortran compiler supports C_FUNLOC/TS 29113... yes
checking if Fortran compiler supports PRIVATE... yes
checking if Fortran compiler supports PROTECTED... yes
checking if Fortran compiler supports ABSTRACT... yes
checking if Fortran compiler supports ASYNCHRONOUS... yes
checking size of Fortran type(test_mpi_handle)... 4
checking alignment of Fortran type(test_mpi_handle)...     4
checking Fortran compiler F08 assumed rank syntax... not cached; checking
checking for Fortran compiler support of TYPE(*), DIMENSION(..)... yes
checking Fortran compiler F08 assumed rank syntax... yes
checking which mpi_f08 implementation to build... "good" compiler, no array subsections
checking if building Fortran 'use mpi_f08' bindings... yes

============================================================================
== Header file tests
============================================================================
checking alloca.h usability... yes
checking alloca.h presence... yes
checking for alloca.h... yes
checking aio.h usability... yes
checking aio.h presence... yes
checking for aio.h... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking dirent.h usability... yes
checking dirent.h presence... yes
checking for dirent.h... yes
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
checking execinfo.h usability... yes
checking execinfo.h presence... yes
checking for execinfo.h... yes
checking err.h usability... yes
checking err.h presence... yes
checking for err.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking grp.h usability... yes
checking grp.h presence... yes
checking for grp.h... yes
checking libgen.h usability... yes
checking libgen.h presence... yes
checking for libgen.h... yes
checking libutil.h usability... no
checking libutil.h presence... no
checking for libutil.h... no
checking for memory.h... (cached) yes
checking for netdb.h... (cached) yes
checking for netinet/in.h... (cached) yes
checking for netinet/tcp.h... (cached) yes
checking poll.h usability... yes
checking poll.h presence... yes
checking for poll.h... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking pty.h usability... yes
checking pty.h presence... yes
checking for pty.h... yes
checking pwd.h usability... yes
checking pwd.h presence... yes
checking for pwd.h... yes
checking sched.h usability... yes
checking sched.h presence... yes
checking for sched.h... yes
checking for strings.h... (cached) yes
checking stropts.h usability... yes
checking stropts.h presence... yes
checking for stropts.h... yes
checking sys/fcntl.h usability... yes
checking sys/fcntl.h presence... yes
checking for sys/fcntl.h... yes
checking sys/ipc.h usability... yes
checking sys/ipc.h presence... yes
checking for sys/ipc.h... yes
checking sys/shm.h usability... yes
checking sys/shm.h presence... yes
checking for sys/shm.h... yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking sys/mman.h usability... yes
checking sys/mman.h presence... yes
checking for sys/mman.h... yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking sys/queue.h usability... yes
checking sys/queue.h presence... yes
checking for sys/queue.h... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/select.h usability... yes
checking sys/select.h presence... yes
checking for sys/select.h... yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking sys/sockio.h usability... no
checking sys/sockio.h presence... no
checking for sys/sockio.h... no
checking for sys/stat.h... (cached) yes
checking sys/statfs.h usability... yes
checking sys/statfs.h presence... yes
checking for sys/statfs.h... yes
checking sys/statvfs.h usability... yes
checking sys/statvfs.h presence... yes
checking for sys/statvfs.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking sys/tree.h usability... no
checking sys/tree.h presence... no
checking for sys/tree.h... no
checking for sys/types.h... (cached) yes
checking sys/uio.h usability... yes
checking sys/uio.h presence... yes
checking for sys/uio.h... yes
checking sys/un.h usability... yes
checking sys/un.h presence... yes
checking for sys/un.h... yes
checking net/uio.h usability... no
checking net/uio.h presence... no
checking for net/uio.h... no
checking sys/utsname.h usability... yes
checking sys/utsname.h presence... yes
checking for sys/utsname.h... yes
checking sys/vfs.h usability... yes
checking sys/vfs.h presence... yes
checking for sys/vfs.h... yes
checking sys/wait.h usability... yes
checking sys/wait.h presence... yes
checking for sys/wait.h... yes
checking syslog.h usability... yes
checking syslog.h presence... yes
checking for syslog.h... yes
checking termios.h usability... yes
checking termios.h presence... yes
checking for termios.h... yes
checking ulimit.h usability... yes
checking ulimit.h presence... yes
checking for ulimit.h... yes
checking for unistd.h... (cached) yes
checking util.h usability... no
checking util.h presence... no
checking for util.h... no
checking utmp.h usability... yes
checking utmp.h presence... yes
checking for utmp.h... yes
checking malloc.h usability... yes
checking malloc.h presence... yes
checking for malloc.h... yes
checking ifaddrs.h usability... yes
checking ifaddrs.h presence... yes
checking for ifaddrs.h... yes
checking crt_externs.h usability... no
checking crt_externs.h presence... no
checking for crt_externs.h... no
checking regex.h usability... yes
checking regex.h presence... yes
checking for regex.h... yes
checking mntent.h usability... yes
checking mntent.h presence... yes
checking for mntent.h... yes
checking paths.h usability... yes
checking paths.h presence... yes
checking for paths.h... yes
checking ioLib.h usability... no
checking ioLib.h presence... no
checking for ioLib.h... no
checking sockLib.h usability... no
checking sockLib.h presence... no
checking for sockLib.h... no
checking hostLib.h usability... no
checking hostLib.h presence... no
checking for hostLib.h... no
checking shlwapi.h usability... no
checking shlwapi.h presence... no
checking for shlwapi.h... no
checking sys/synch.h usability... no
checking sys/synch.h presence... no
checking for sys/synch.h... no
checking db.h usability... yes
checking db.h presence... yes
checking for db.h... yes
checking ndbm.h usability... no
checking ndbm.h presence... no
checking for ndbm.h... no
checking for sys/mount.h... yes
checking for sys/sysctl.h... yes
checking for net/if.h... yes
checking stdbool.h usability... yes
checking stdbool.h presence... yes
checking for stdbool.h... yes
checking if <stdbool.h> works... yes

============================================================================
== Type tests
============================================================================
checking for socklen_t... yes
checking for struct sockaddr_in... (cached) yes
checking for struct sockaddr_in6... yes
checking for struct sockaddr_storage... yes
checking whether AF_UNSPEC is declared... yes
checking whether PF_UNSPEC is declared... yes
checking whether AF_INET6 is declared... yes
checking whether PF_INET6 is declared... yes
checking if SA_RESTART defined in signal.h... yes
checking for struct sockaddr.sa_len... no
checking for struct dirent.d_type... yes
checking for siginfo_t.si_fd... yes
checking for siginfo_t.si_band... yes
checking for struct statfs.f_type... yes
checking for struct statfs.f_fstypename... no
checking for struct statvfs.f_basetype... no
checking for struct statvfs.f_fstypename... no
checking for pointer diff type... ptrdiff_t (size: 8)
checking for type of MPI_Aint... ptrdiff_t (size: 8)
checking for type of MPI_Count... long long (size: 8)
checking for type of MPI_Offset... long long (size: 8)
checking for an MPI datatype for MPI_Offset... MPI_LONG_LONG
checking for MPI_INTEGER_KIND... 4
checking for MPI_ADDRESS_KIND... 8
checking for MPI_COUNT_KIND... 8
checking for MPI_OFFSET_KIND... 8
checking the linker for support for the -fini option... yes

============================================================================
== Library and Function tests
============================================================================
checking for library containing openpty... -lutil
checking for library containing gethostbyname... none required
checking for library containing socket... none required
checking for library containing sched_yield... none required
checking for library containing dirname... none required
checking for library containing ceil... -lm
checking for library containing clock_gettime... none required
checking for asprintf... yes
checking for snprintf... yes
checking for vasprintf... yes
checking for vsnprintf... yes
checking for openpty... yes
checking for isatty... yes
checking for getpwuid... yes
checking for fork... yes
checking for waitpid... yes
checking for execve... yes
checking for pipe... yes
checking for ptsname... yes
checking for setsid... yes
checking for mmap... yes
checking for tcgetpgrp... yes
checking for posix_memalign... yes
checking for strsignal... yes
checking for sysconf... yes
checking for syslog... yes
checking for vsyslog... yes
checking for regcmp... no
checking for regexec... yes
checking for regfree... yes
checking for _NSGetEnviron... no
checking for socketpair... yes
checking for strncpy_s... no
checking for usleep... yes
checking for mkfifo... yes
checking for dbopen... no
checking for dbm_open... no
checking for statfs... yes
checking for statvfs... yes
checking for setpgid... yes
checking for setenv... yes
checking for __malloc_initialize_hook... yes
checking for htonl define... no
checking for htonl... yes
checking whether va_copy is declared... yes
checking whether __va_copy is declared... yes
checking whether __func__ is declared... yes

============================================================================
== System-specific tests
============================================================================
checking for _SC_NPROCESSORS_ONLN... yes
checking whether byte ordering is bigendian... no
checking for broken qsort... no
checking if C compiler and POSIX threads work as is... no
checking if C++ compiler and POSIX threads work as is... no
checking if Fortran compiler and POSIX threads work as is... no
checking if C compiler and POSIX threads work with -Kthread... no
checking if C compiler and POSIX threads work with -kthread... no
checking if C compiler and POSIX threads work with -pthread... yes
checking if C++ compiler and POSIX threads work with -Kthread... no
checking if C++ compiler and POSIX threads work with -kthread... no
checking if C++ compiler and POSIX threads work with -pthread... yes
checking if Fortran compiler and POSIX threads work with -Kthread... no
checking if Fortran compiler and POSIX threads work with -kthread... no
checking if Fortran compiler and POSIX threads work with -pthread... yes
checking for pthread_mutexattr_setpshared... yes
checking for pthread_condattr_setpshared... yes
checking for PTHREAD_MUTEX_ERRORCHECK_NP... yes
checking for PTHREAD_MUTEX_ERRORCHECK... yes
checking for working POSIX threads package... yes
checking if threads have different pids (pthreads on linux)... no
checking if want MPI_THREAD_MULTIPLE support... Disabled
checking whether ln -s works... yes
checking for grep that handles long lines and -e... (cached) /bin/grep
checking for egrep... (cached) /bin/grep -E
checking dependency style of x86_64-pc-linux-gnu-gcc... (cached) none
checking for flex... flex
checking lex output file root... lex.yy
checking lex library... -lfl
checking whether yytext is a pointer... yes
checking for flavor of ps to use... ps -A -o fname,pid,user
checking if build filesystem is case sensitive... yes
checking if configuring for case sensitive filesystem... yes
checking whether RLIMIT_NPROC is declared... yes
checking whether RLIMIT_MEMLOCK is declared... yes
checking whether RLIMIT_NOFILE is declared... yes
checking whether RLIMIT_FSIZE is declared... yes
checking whether RLIMIT_CORE is declared... yes
checking whether RLIMIT_STACK is declared... yes
checking whether RLIMIT_AS is declared... yes

============================================================================
== Modular Component Architecture (MCA) setup
============================================================================
checking for subdir args...  '--prefix=/usr' '--build=x86_64-pc-linux-gnu' '--host=x86_64-pc-linux-gnu' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--datadir=/usr/share' '--sysconfdir=/etc' '--localstatedir=/var/lib' '--disable-dependency-tracking' '--disable-silent-rules' '--docdir=/usr/share/doc/openmpi-2.0.1' '--htmldir=/usr/share/doc/openmpi-2.0.1/html' '--libdir=/usr/lib64' '--sysconfdir=/etc/openmpi' '--enable-pretty-print-stacktrace' '--enable-orterun-prefix-by-default' '--with-hwloc=/usr' '--with-libltdl=/usr' '--with-libevent=/usr' '--enable-mpi-fortran=all' '--enable-mpi-cxx' '--without-cma' '--without-cuda' '--disable-io-romio' '--disable-heterogeneous' '--enable-ipv6' '--disable-java' '--disable-mpi-java' '--disable-mpi-thread-multiple' '--without-verbs' '--without-knem' '--without-psm' '--disable-openib-control-hdr-padding' '--disable-openib-connectx-xrc' '--disable-openib-rdmacm' '--disable-openib-udcm' '--disable-openib-dynamic-sl' '--disable-btl-openib-failover' '--without-tm' '--without-slurm' 'build_alias=x86_64-pc-linux-gnu' 'host_alias=x86_64-pc-linux-gnu' 'CFLAGS=-march=native -O2 -pipe' 'LDFLAGS=-Wl,-O1 -Wl,--as-needed' 'CXXFLAGS=-march=native -O2 -pipe' 'FC=x86_64-pc-linux-gnu-gfortran' 'FCFLAGS=-O2 -pipe' 'PKG_CONFIG_PATH=/usr/lib64/pkgconfig'
checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config
checking pkg-config is at least version 0.9.0... yes
checking --with-verbs value... simple ok (unspecified)
checking --with-verbs-libdir value... simple ok (unspecified)
checking for x86_64-pc-linux-gnu-pkg-config... (cached) /usr/bin/x86_64-pc-linux-gnu-pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for X... libraries , headers 
 
==> Pre-emptively configuring the hwloc framework to satisfy dependencies.
checking whether to enable hwloc PCI device support... yes (default)

+++ Configuring MCA framework hwloc
checking for no configure components in framework hwloc... 
checking for m4 configure components in framework hwloc... external, hwloc1112

--- MCA component hwloc:external (m4 configuration macro, priority 90)
checking for MCA component hwloc:external compile mode... static
checking --with-hwloc-libdir value... simple ok (unspecified)
checking looking for external hwloc in... (/usr)
looking for header without includes
checking hwloc.h usability... yes
checking hwloc.h presence... yes
checking for hwloc.h... yes
looking for library without search path
checking for library containing hwloc_topology_init... -lhwloc
checking if external hwloc supports XML... yes
checking infiniband/verbs.h usability... no
checking infiniband/verbs.h presence... no
checking for infiniband/verbs.h... no
checking if external hwloc version is 1.8 or greater... yes
checking if MCA component hwloc:external can compile... yes

--- MCA component hwloc:hwloc1112 (m4 configuration macro, priority 90)
checking for MCA component hwloc:hwloc1112 compile mode... static
checking hwloc building mode... embedded
configure: hwloc builddir: /var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1-abi_x86_64.amd64/opal/mca/hwloc/hwloc1112/hwloc
configure: hwloc srcdir: /var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1/opal/mca/hwloc/hwloc1112/hwloc
configure: Detected VPATH build
checking for hwloc version... 1.11.2
checking if want hwloc maintainer support... disabled (embedded mode)
checking for hwloc directory prefix... opal/mca/hwloc/hwloc1112/hwloc/
checking for hwloc symbol prefix... hwloc_
checking size of void *... (cached) 8
checking which OS support to include... Linux
checking which CPU support to include... x86_64
checking size of unsigned long... 8
checking size of unsigned int... 4
checking for the C compiler vendor... gnu
checking for __attribute__... yes
checking for __attribute__(aligned)... yes
checking for __attribute__(always_inline)... yes
checking for __attribute__(cold)... yes
checking for __attribute__(const)... yes
checking for __attribute__(deprecated)... yes
checking for __attribute__(format)... yes
checking for __attribute__(hot)... yes
checking for __attribute__(malloc)... yes
checking for __attribute__(may_alias)... yes
checking for __attribute__(no_instrument_function)... yes
checking for __attribute__(nonnull)... yes
checking for __attribute__(noreturn)... yes
checking for __attribute__(packed)... yes
checking for __attribute__(pure)... yes
checking for __attribute__(sentinel)... yes
checking for __attribute__(unused)... yes
checking for __attribute__(warn_unused_result)... yes
checking for __attribute__(weak_alias)... yes
checking if x86_64-pc-linux-gnu-gcc supports -fvisibility=hidden... yes
checking whether to enable symbol visibility... yes (via -fvisibility=hidden)
configure: WARNING: "-fvisibility=hidden" has been added to the hwloc CFLAGS
checking whether the C compiler rejects function calls with too many arguments... yes
checking whether the C compiler rejects function calls with too few arguments... yes
checking for unistd.h... (cached) yes
checking for dirent.h... (cached) yes
checking for strings.h... (cached) yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking for strncasecmp... yes
checking whether function strncasecmp is declared... yes
checking for strftime... yes
checking for setlocale... yes
checking for stdint.h... (cached) yes
checking for sys/mman.h... (cached) yes
checking for KAFFINITY... no
checking for PROCESSOR_CACHE_TYPE... no
checking for CACHE_DESCRIPTOR... no
checking for LOGICAL_PROCESSOR_RELATIONSHIP... no
checking for RelationProcessorPackage... no
checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION... no
checking for GROUP_AFFINITY... no
checking for PROCESSOR_RELATIONSHIP... no
checking for NUMA_NODE_RELATIONSHIP... no
checking for CACHE_RELATIONSHIP... no
checking for PROCESSOR_GROUP_INFO... no
checking for GROUP_RELATIONSHIP... no
checking for SYSTEM_LOGICAL_PROCESSOR_INFORMATION_EX... no
checking for PSAPI_WORKING_SET_EX_BLOCK... no
checking for PSAPI_WORKING_SET_EX_INFORMATION... no
checking for PROCESSOR_NUMBER... no
checking for main in -lgdi32... no
checking windows.h usability... no
checking windows.h presence... no
checking for windows.h... no
checking sys/lgrp_user.h usability... no
checking sys/lgrp_user.h presence... no
checking for sys/lgrp_user.h... no
checking kstat.h usability... no
checking kstat.h presence... no
checking for kstat.h... no
checking whether fabsf is declared... yes
checking for fabsf in -lm... yes
checking picl.h usability... no
checking picl.h presence... no
checking for picl.h... no
checking whether _SC_NPROCESSORS_ONLN is declared... yes
checking whether _SC_NPROCESSORS_CONF is declared... yes
checking whether _SC_NPROC_ONLN is declared... no
checking whether _SC_NPROC_CONF is declared... no
checking whether _SC_PAGESIZE is declared... yes
checking whether _SC_PAGE_SIZE is declared... yes
checking whether _SC_LARGE_PAGESIZE is declared... no
checking mach/mach_host.h usability... no
checking mach/mach_host.h presence... no
checking for mach/mach_host.h... no
checking mach/mach_init.h usability... no
checking mach/mach_init.h presence... no
checking for mach/mach_init.h... no
checking for sys/param.h... (cached) yes
checking for sys/sysctl.h... (cached) yes
checking whether CTL_HW is declared... no
checking whether HW_NCPU is declared... no
checking whether strtoull is declared... yes
checking whether getprogname is declared... no
checking whether getexecname is declared... no
checking whether GetModuleFileName is declared... no
checking for program_invocation_name... yes
checking for __progname... yes
checking for pthread_t... yes
checking whether function sched_setaffinity is declared... yes
checking for old prototype of sched_setaffinity... no
checking for working CPU_SET... yes
checking for working CPU_SET_S... yes
checking for working syscall... yes
checking for KERRIGHED... no
checking for lib... no
checking for bash... /bin/sh
checking for ffs... yes
checking whether function ffs is declared... yes
checking for ffsl... yes
checking whether function ffsl is declared... yes
checking for fls... no
checking for flsl... no
checking for clz... no
checking for clzl... no
checking for openat... yes
checking for malloc.h... (cached) yes
checking for getpagesize... yes
checking for memalign... yes
checking for posix_memalign... (cached) yes
checking for sys/utsname.h... (cached) yes
checking for uname... yes
checking pthread_np.h usability... no
checking pthread_np.h presence... no
checking for pthread_np.h... no
checking whether pthread_setaffinity_np is declared... yes
checking whether pthread_getaffinity_np is declared... yes
checking for sched_setaffinity... yes
checking for sys/cpuset.h... no
checking for cpuset_setaffinity... no
checking for library containing pthread_getthrds_np... no
checking for cpuset_setid... no
checking numaif.h usability... yes
checking numaif.h presence... yes
checking for numaif.h... yes
checking for numa_available in -lnuma... yes
checking for set_mempolicy in -lnuma... yes
checking for mbind in -lnuma... yes
checking for migrate_pages in -lnuma... yes
checking libudev.h usability... yes
checking libudev.h presence... yes
checking for libudev.h... yes
checking for udev_device_new_from_subsystem_sysname in -ludev... yes
checking for PCIACCESS... yes
checking pciaccess.h usability... yes
checking pciaccess.h presence... yes
checking for pciaccess.h... yes
checking for pci_slot_match_iterator_create... yes
checking for final PCIACCESS support... yes
checking CL/cl_ext.h usability... no
checking CL/cl_ext.h presence... no
checking for CL/cl_ext.h... no
checking cuda.h usability... no
checking cuda.h presence... no
checking for cuda.h... no
checking cuda_runtime_api.h usability... no
checking cuda_runtime_api.h presence... no
checking for cuda_runtime_api.h... no
checking nvml.h usability... no
checking nvml.h presence... no
checking for nvml.h... no
checking for gethostbyname... yes
checking for connect... yes
checking for remove... yes
checking for shmat... yes
checking for IceConnectionNumber in -lICE... yes
checking X11/Xlib.h usability... yes
checking X11/Xlib.h presence... yes
checking for X11/Xlib.h... yes
checking for XOpenDisplay in -lX11... yes
checking for X11/Xutil.h... yes
checking X11/keysym.h usability... yes
checking X11/keysym.h presence... yes
checking for X11/keysym.h... yes
checking NVCtrl/NVCtrl.h usability... no
checking NVCtrl/NVCtrl.h presence... no
checking for NVCtrl/NVCtrl.h... no
checking for x86 cpuid... yes
checking for pthread_mutex_lock... yes
checking if plugin support is enabled... no
checking components to build statically...  noos xml synthetic custom xml_nolibxml linux linuxpci pci x86
checking components to build as plugins... 
checking whether hwloc configure succeeded... yes
checking for infiniband/verbs.h... (cached) no
configure: WARNING: using an external hwloc; disqualifying this component
checking if MCA component hwloc:hwloc1112 can compile... no
 
checking for winning hwloc component header file... opal/mca/hwloc/external/external.h
 
<== Pre-emptive hwloc framework configuration complete.
<== We now return you to your regularly scheduled programming.
 
checking if user requested external PMIx support()... no
checking if user requested PMI support... no
checking which components should be disabled... 
checking which components should be direct-linked into the library... 
checking which components should be run-time loadable... all
checking which components should be static... none
checking for projects containing MCA frameworks... opal, orte, ompi, oshmem

*** Configuring MCA for opal
checking for frameworks for opal... common, allocator, backtrace, btl, dl, event, hwloc, if, installdirs, memchecker, memcpy, memory, mpool, patcher, pmix, pstat, rcache, sec, shmem, timer

+++ Configuring MCA framework common
checking for no configure components in framework common... 
checking for m4 configure components in framework common... cuda, libfabric, sm, ugni, verbs, verbs_usnic

--- MCA component common:cuda (m4 configuration macro)
checking for MCA component common:cuda compile mode... dso
checking if MCA component common:cuda can compile... no

--- MCA component common:libfabric (m4 configuration macro)
checking for MCA component common:libfabric compile mode... dso
checking --with-libfabric value... simple ok (unspecified)
checking --with-libfabric-libdir value... simple ok (unspecified)
checking looking for libfabric in... ()
checking rdma/fabric.h usability... no
checking rdma/fabric.h presence... no
checking for rdma/fabric.h... no
checking if MCA component common:libfabric can compile... no

--- MCA component common:sm (m4 configuration macro)
checking for MCA component common:sm compile mode... dso
checking if MCA component common:sm can compile... yes

--- MCA component common:ugni (m4 configuration macro)
checking for MCA component common:ugni compile mode... dso
checking for CRAY_UGNI... no
checking if MCA component common:ugni can compile... no

--- MCA component common:verbs (m4 configuration macro)
checking for MCA component common:verbs compile mode... dso
checking if want to add padding to the openib BTL control header... no
checking if ConnectX XRC support is enabled... no
checking if ConnectIB XRC support is enabled... no
checking if dynamic SL is enabled... no
checking if MCA component common:verbs can compile... no

--- MCA component common:verbs_usnic (m4 configuration macro)
checking for MCA component common:verbs_usnic compile mode... static
checking if MCA component common:verbs_usnic can compile... no

+++ Configuring MCA framework allocator
checking for no configure components in framework allocator... basic, bucket
checking for m4 configure components in framework allocator... 

--- MCA component allocator:basic (no configuration)
checking for MCA component allocator:basic compile mode... dso
checking if MCA component allocator:basic can compile... yes

--- MCA component allocator:bucket (no configuration)
checking for MCA component allocator:bucket compile mode... dso
checking if MCA component allocator:bucket can compile... yes

+++ Configuring MCA framework backtrace
checking for no configure components in framework backtrace... 
checking for m4 configure components in framework backtrace... execinfo, none, printstack

--- MCA component backtrace:execinfo (m4 configuration macro, priority 30)
checking for MCA component backtrace:execinfo compile mode... static
checking for execinfo.h... (cached) yes
checking for library containing backtrace... none required
checking if MCA component backtrace:execinfo can compile... yes

--- MCA component backtrace:printstack (m4 configuration macro, priority 30)
checking for MCA component backtrace:printstack compile mode... static
checking ucontext.h usability... yes
checking ucontext.h presence... yes
checking for ucontext.h... yes
checking for printstack... no
checking if MCA component backtrace:printstack can compile... no

--- MCA component backtrace:none (m4 configuration macro, priority 0)
checking for MCA component backtrace:none compile mode... static
checking if MCA component backtrace:none can compile... no

+++ Configuring MCA framework btl
checking for no configure components in framework btl... self
checking for m4 configure components in framework btl... openib, portals4, scif, sm, smcuda, tcp, ugni, usnic, vader

--- MCA component btl:self (no configuration)
checking for MCA component btl:self compile mode... dso
checking if MCA component btl:self can compile... yes

--- MCA component btl:openib (m4 configuration macro)
checking for MCA component btl:openib compile mode... dso
checking if want to add padding to the openib BTL control header... no
checking if ConnectX XRC support is enabled... no
checking if ConnectIB XRC support is enabled... no
checking if dynamic SL is enabled... no
checking whether expanded verbs are available... no
checking whether IBV_EXP_ATOMIC_HCA_REPLY_BE is declared... no
checking whether IBV_EXP_QP_CREATE_ATOMIC_BE_REPLY is declared... no
checking whether ibv_exp_create_qp is declared... no
checking whether ibv_exp_query_device is declared... no
checking whether IBV_EXP_QP_INIT_ATTR_ATOMICS_ARG is declared... no
checking for struct ibv_exp_device_attr.ext_atom... no
checking for struct ibv_exp_device_attr.exp_atomic_cap... no
checking whether openib failover is enabled... no
checking if MCA component btl:openib can compile... no

--- MCA component btl:portals4 (m4 configuration macro)
checking for MCA component btl:portals4 compile mode... dso
checking --with-portals4 value... simple ok (unspecified)
checking --with-portals4-libdir value... simple ok (unspecified)
checking portals4.h usability... no
checking portals4.h presence... no
checking for portals4.h... no
checking whether to enable flow control... no
checking if MCA component btl:portals4 can compile... no

--- MCA component btl:scif (m4 configuration macro)
checking for MCA component btl:scif compile mode... dso
checking --with-scif value... simple ok (unspecified)
checking scif.h usability... no
checking scif.h presence... no
checking for scif.h... no
checking if MCA component btl:scif can compile... no

--- MCA component btl:sm (m4 configuration macro)
checking for MCA component btl:sm compile mode... dso
checking if user requested CMA build... no
checking --with-knem value... simple ok (unspecified)
checking if MCA component btl:sm can compile... yes

--- MCA component btl:smcuda (m4 configuration macro)
checking for MCA component btl:smcuda compile mode... dso
checking if MCA component btl:smcuda can compile... no

--- MCA component btl:tcp (m4 configuration macro)
checking for MCA component btl:tcp compile mode... dso
checking for struct sockaddr_in... (cached) yes
checking if MCA component btl:tcp can compile... yes

--- MCA component btl:ugni (m4 configuration macro)
checking for MCA component btl:ugni compile mode... dso
checking for CRAY_UGNI... no
checking if MCA component btl:ugni can compile... no

--- MCA component btl:usnic (m4 configuration macro)
checking for MCA component btl:usnic compile mode... dso
checking size of void *... (cached) 8
checking for 64 bit Linux... yes
checking whether libfabric support is available... no
checking if MCA component btl:usnic can compile... no

--- MCA component btl:vader (m4 configuration macro)
checking for MCA component btl:vader compile mode... dso
checking for Cray XPMEM support... checking for CRAY_XPMEM... no
checking --with-xpmem value... simple ok (unspecified)
checking --with-xpmem-libdir value... simple ok (unspecified)
checking xpmem.h usability... no
checking xpmem.h presence... no
checking for xpmem.h... no
checking --with-knem value... simple ok (unspecified)
checking if user requested CMA build... no
checking if MCA component btl:vader can compile... yes

+++ Configuring MCA framework dl
checking for no configure components in framework dl... 
checking for m4 configure components in framework dl... dlopen, libltdl

--- MCA component dl:dlopen (m4 configuration macro, priority 80)
checking for MCA component dl:dlopen compile mode... static
checking dlfcn.h usability... yes
checking dlfcn.h presence... yes
checking for dlfcn.h... yes
looking for library without search path
checking for library containing dlopen... -ldl
checking if MCA component dl:dlopen can compile... yes

--- MCA component dl:libltdl (m4 configuration macro, priority 50)
checking for MCA component dl:libltdl compile mode... static
checking --with-libltdl value... sanity check ok (/usr)
checking --with-libltdl-libdir value... simple ok (unspecified)
checking for libltdl dir... /usr (from --with-libltdl)
checking for libltdl library dir... linker default
looking for header without includes
checking ltdl.h usability... yes
checking ltdl.h presence... yes
checking for ltdl.h... yes
looking for library without search path
checking for library containing lt_dlopen... -lltdl
checking for lt_dladvise_init... yes
checking if MCA component dl:libltdl can compile... no

+++ Configuring MCA framework event
checking for no configure components in framework event... 
checking for m4 configure components in framework event... external, libevent2022

--- MCA component event:external (m4 configuration macro, priority 90)
checking for MCA component event:external compile mode... static
checking --with-libevent-libdir value... simple ok (unspecified)
checking for external libevent in... /usr
checking --with-libevent value... simple ok (unspecified)
looking for header without includes
checking event.h usability... yes
checking event.h presence... yes
checking for event.h... yes
looking for library without search path
checking for library containing event_config_new... no
looking for library in lib
checking for library containing event_config_new... no
looking for library in lib64
checking for library containing event_config_new... no
checking for evthread_set_lock_callbacks in -levent... no
configure: WARNING: External libevent does not have thread support
configure: WARNING: Open MPI requires libevent to be compiled with
configure: WARNING: thread support enabled
configure: error: Cannot continue

!!! Please attach the following file when seeking support:
!!! /var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1-abi_x86_64.amd64/config.log
 * ERROR: sys-cluster/openmpi-2.0.1::gentoo failed (configure phase):
 *   econf failed
 * 
 * Call stack:
 *               ebuild.sh, line  115:  Called src_configure
 *             environment, line 4865:  Called multilib-minimal_src_configure
 *             environment, line 4009:  Called multilib_foreach_abi 'multilib-minimal_abi_src_configure'
 *             environment, line 4223:  Called multibuild_foreach_variant '_multilib_multibuild_wrapper' 'multilib-minimal_abi_src_configure'
 *             environment, line 3939:  Called _multibuild_run '_multilib_multibuild_wrapper' 'multilib-minimal_abi_src_configure'
 *             environment, line 3937:  Called _multilib_multibuild_wrapper 'multilib-minimal_abi_src_configure'
 *             environment, line  601:  Called multilib-minimal_abi_src_configure
 *             environment, line 4003:  Called multilib_src_configure
 *             environment, line 4438:  Called econf '--sysconfdir=/etc/openmpi' '--enable-pretty-print-stacktrace' '--enable-orterun-prefix-by-default' '--with-hwloc=/usr' '--with-libltdl=/usr' '--with-libevent=/usr' '--enable-mpi-fortran=all' '--enable-mpi-cxx' '--without-cma' '--without-cuda' '--disable-io-romio' '--disable-heterogeneous' '--enable-ipv6' '--disable-java' '--disable-mpi-java' '--disable-mpi-thread-multiple' '--without-verbs' '--without-knem' '--without-psm' '--disable-openib-control-hdr-padding' '--disable-openib-connectx-xrc' '--disable-openib-rdmacm' '--disable-openib-udcm' '--disable-openib-dynamic-sl' '--disable-btl-openib-failover' '--without-tm' '--without-slurm'
 *        phase-helpers.sh, line  665:  Called __helpers_die 'econf failed'
 *   isolated-functions.sh, line  117:  Called die
 * The specific snippet of code:
 *   		die "$@"
 * 
 * If you need support, post the output of `emerge --info '=sys-cluster/openmpi-2.0.1::gentoo'`,
 * the complete build log and the output of `emerge -pqv '=sys-cluster/openmpi-2.0.1::gentoo'`.
!!! When you file a bug report, please include the following information:
GENTOO_VM=  CLASSPATH="" JAVA_HOME="/etc/java-config-2/current-system-vm"
JAVACFLAGS="" COMPILER=""
and of course, the output of emerge --info =openmpi-2.0.1
 * The complete build log is located at '/var/log/portage/sys-cluster:openmpi-2.0.1:20161213-050603.log'.
 * For convenience, a symlink to the build log is located at '/var/tmp/portage/sys-cluster/openmpi-2.0.1/temp/build.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sys-cluster/openmpi-2.0.1/temp/environment'.
 * Working directory: '/var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1-abi_x86_64.amd64'
 * S: '/var/tmp/portage/sys-cluster/openmpi-2.0.1/work/openmpi-2.0.1'