build.log

build2.log (text/plain), 38.42 KB, created by Chris White on 2016-11-27 21:28:56 UTC

[32;01m * [39;49;00mPackage:    dev-python/graph-tool-2.2.44
[32;01m * [39;49;00mRepository: gentoo-overlay
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        abi_x86_64 amd64 cairo elibc_glibc kernel_linux openmp python_targets_python2_7 python_targets_python3_4 userland_GNU
[32;01m * [39;49;00mFEATURES:   preserve-libs sandbox userpriv usersandbox
 [32;01m*[0m Checking for at least 6 GiB disk space at "/var/tmp/portage/dev-python/graph-tool-2.2.44/temp" ...
[A[198C [34;01m[ [32;01mok[34;01m ][0m
>>> Unpacking source...
>>> Unpacking graph-tool-2.2.44.tar.bz2 to /var/tmp/portage/dev-python/graph-tool-2.2.44/work
>>> Source unpacked in /var/tmp/portage/dev-python/graph-tool-2.2.44/work
>>> Preparing source in /var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44 ...
 [32;01m*[0m Will copy sources from /var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44
 [32;01m*[0m python2_7: copying to /var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44-python2_7
 [32;01m*[0m python3_4: copying to /var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44-python3_4
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44 ...
 [32;01m*[0m python2_7: running run_in_build_dir configure
 * econf: updating graph-tool-2.2.44-python2_7/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating graph-tool-2.2.44-python2_7/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating graph-tool-2.2.44/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating graph-tool-2.2.44/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating graph-tool-2.2.44-python3_4/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating graph-tool-2.2.44-python3_4/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --libdir=/usr/lib64 --disable-static --disable-optimization --enable-openmp --enable-cairo --with-boost-python=2.7-mt
checking for a BSD-compatible install... /usr/lib/portage/python2.7/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking for style of include used by make... GNU
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking for library containing strerror... none required
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of x86_64-pc-linux-gnu-g++... none
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C99... unsupported
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed
checking for x86_64-pc-linux-gnu-gcc option to accept ISO Standard C... (cached) none needed
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking for ANSI C header files... (cached) yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B
checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
checking for archiver @FILE support... @
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for x86_64-pc-linux-gnu-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking target system type... x86_64-pc-linux-gnu
checking whether to enable debug info...... no
checking whether C++ compiler supports -std=gnu++11... yes
checking whether to enable function inlining...... yes
checking whether to enable optimizations...... no
checking whether to enable symbol visibility manipulation...... yes
checking whether to enable parallel algorithms with openmp...... yes
checking whether to enable cairo drawing...... yes
checking for main in -lm... yes
checking for main in -lbz2... yes
checking for main in -lexpat... yes
================
Detecting python
================
checking whether /usr/bin/python2.7 version is >= 2.6... yes
checking for /usr/bin/python2.7 version... 2.7
checking for /usr/bin/python2.7 platform... linux2
checking for /usr/bin/python2.7 script directory... ${prefix}/lib64/python2.7/site-packages
checking for /usr/bin/python2.7 extension module directory... ${exec_prefix}/lib64/python2.7/site-packages
checking for python2.7... /usr/bin/python2.7
checking for a version of Python >= '2.1.0'... yes
checking for a version of Python == '2.7.10'... yes
checking for the distutils Python package... yes
checking for Python include path... -I/usr/include/python2.7
checking for Python library path... -L/usr/lib64 -lpython2.7
checking for Python site-packages path... /usr/lib64/python2.7/site-packages
checking python extra libraries... -lpthread -ldl  -lutil -lm
checking python extra linking flags... -Xlinker -export-dynamic
checking consistency of all components of python development environment... yes
graph-tool will be installed at: /usr/lib64/python2.7/site-packages
===========================
Using python version: 2.7.10
===========================
checking for boostlib >= 1.53.0... yes
checking whether the Boost::Python library is available... yes
checking for exit in -l2.7-mt... no
checking for exit in -lboost_python-2.7-mt... yes
checking whether the Boost::Iostreams library is available... yes
checking for exit in -lboost_iostreams... yes
checking whether the Boost::Regex library is available... yes
checking for exit in -lboost_regex... yes
checking whether the Boost::Graph library is available... yes
checking for exit in -lboost_graph... yes
checking for main in -lCGAL... yes
checking whether to cgal debbuging with valgrind...... no
checking python2.7 module: numpy... yes
checking for /usr/lib64/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h... yes
checking python2.7 module: scipy... yes
checking /usr/lib64/python2.7/site-packages/scipy/weave/scxx/object.h usability... yes
checking /usr/lib64/python2.7/site-packages/scipy/weave/scxx/object.h presence... yes
checking for /usr/lib64/python2.7/site-packages/scipy/weave/scxx/object.h... yes
checking expat.h usability... yes
checking expat.h presence... yes
checking for expat.h... yes
checking CGAL/version.h usability... yes
checking CGAL/version.h presence... yes
checking for CGAL/version.h... yes
checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for CAIROMM... yes
checking python2.7 module: cairo... yes
checking pycairo/pycairo.h usability... yes
checking pycairo/pycairo.h presence... yes
checking for pycairo/pycairo.h... yes
checking whether to enable sparsehash...... yes
checking for SPARSEHASH... yes
checking sparsehash/dense_hash_set usability... yes
checking sparsehash/dense_hash_set presence... yes
checking for sparsehash/dense_hash_set... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/graph/Makefile
config.status: creating src/graph/centrality/Makefile
config.status: creating src/graph/clustering/Makefile
config.status: creating src/graph/community/Makefile
config.status: creating src/graph/correlations/Makefile
config.status: creating src/graph/draw/Makefile
config.status: creating src/graph/flow/Makefile
config.status: creating src/graph/generation/Makefile
config.status: creating src/graph/layout/Makefile
config.status: creating src/graph/search/Makefile
config.status: creating src/graph/spectral/Makefile
config.status: creating src/graph/stats/Makefile
config.status: creating src/graph/topology/Makefile
config.status: creating src/graph/util/Makefile
config.status: creating src/graph_tool/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
 [32;01m*[0m python3_4: running run_in_build_dir configure
 * econf: updating graph-tool-2.2.44-python2_7/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating graph-tool-2.2.44-python2_7/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating graph-tool-2.2.44/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating graph-tool-2.2.44/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating graph-tool-2.2.44-python3_4/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating graph-tool-2.2.44-python3_4/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --libdir=/usr/lib64 --disable-static --disable-optimization --enable-openmp --enable-cairo --with-boost-python=3.4-mt
checking for a BSD-compatible install... /usr/lib/portage/python2.7/ebuild-helpers/xattr/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking whether make supports nested variables... (cached) yes
checking for style of include used by make... GNU
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together... yes
checking dependency style of x86_64-pc-linux-gnu-gcc... none
checking for library containing strerror... none required
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking minix/config.h usability... no
checking minix/config.h presence... no
checking for minix/config.h... no
checking whether it is safe to define __EXTENSIONS__... yes
checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++
checking whether we are using the GNU C++ compiler... yes
checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes
checking dependency style of x86_64-pc-linux-gnu-g++... none
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C99... unsupported
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed
checking for x86_64-pc-linux-gnu-gcc option to accept ISO Standard C... (cached) none needed
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking for ANSI C header files... (cached) yes
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for fgrep... /bin/grep -F
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/x86_64-pc-linux-gnu-nm -B
checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
checking for archiver @FILE support... @
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking for sysroot... no
checking for a working dd... /bin/dd
checking how to truncate binary pipes... /bin/dd bs=4096 count=1
checking for x86_64-pc-linux-gnu-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking for dlfcn.h... yes
checking for objdir... .libs
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... x86_64-pc-linux-gnu-g++ -E
checking for ld used by x86_64-pc-linux-gnu-g++... /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld... yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking for x86_64-pc-linux-gnu-g++ option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-g++ static flag -static works... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking dynamic linker characteristics... (cached) GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking target system type... x86_64-pc-linux-gnu
checking whether to enable debug info...... no
checking whether C++ compiler supports -std=gnu++11... yes
checking whether to enable function inlining...... yes
checking whether to enable optimizations...... no
checking whether to enable symbol visibility manipulation...... yes
checking whether to enable parallel algorithms with openmp...... yes
checking whether to enable cairo drawing...... yes
checking for main in -lm... yes
checking for main in -lbz2... yes
checking for main in -lexpat... yes
================
Detecting python
================
checking whether /usr/bin/python3.4 version is >= 2.6... yes
checking for /usr/bin/python3.4 version... 3.4
checking for /usr/bin/python3.4 platform... linux
checking for /usr/bin/python3.4 script directory... ${prefix}/lib64/python3.4/site-packages
checking for /usr/bin/python3.4 extension module directory... ${exec_prefix}/lib64/python3.4/site-packages
checking for python3.4... /usr/bin/python3.4
checking for a version of Python >= '2.1.0'... yes
checking for a version of Python == '3.4.3'... yes
checking for the distutils Python package... yes
checking for Python include path... -I/usr/include/python3.4
checking for Python library path... -L/usr/lib64 -lpython3.4
checking for Python site-packages path... /usr/lib64/python3.4/site-packages
checking python extra libraries... -lpthread -ldl  -lutil -lm
checking python extra linking flags... -Xlinker -export-dynamic
checking consistency of all components of python development environment... yes
graph-tool will be installed at: /usr/lib64/python3.4/site-packages
===========================
Using python version: 3.4.3
===========================
checking for boostlib >= 1.53.0... yes
checking whether the Boost::Python library is available... yes
checking for exit in -l3.4-mt... no
checking for exit in -lboost_python-3.4-mt... yes
checking whether the Boost::Iostreams library is available... yes
checking for exit in -lboost_iostreams... yes
checking whether the Boost::Regex library is available... yes
checking for exit in -lboost_regex... yes
checking whether the Boost::Graph library is available... yes
checking for exit in -lboost_graph... yes
checking for main in -lCGAL... yes
checking whether to cgal debbuging with valgrind...... no
checking python3.4 module: numpy... yes
checking for /usr/lib64/python3.4/site-packages/numpy/core/include/numpy/arrayobject.h... yes
checking python3.4 module: scipy... yes
checking /usr/lib64/python3.4/site-packages/scipy/weave/scxx/object.h usability... no
checking /usr/lib64/python3.4/site-packages/scipy/weave/scxx/object.h presence... no
checking for /usr/lib64/python3.4/site-packages/scipy/weave/scxx/object.h... no
configure: WARNING: Scipy weave/scxx header not found! (Ignore this if python 3 is being used.)
checking expat.h usability... yes
checking expat.h presence... yes
checking for expat.h... yes
checking CGAL/version.h usability... yes
checking CGAL/version.h presence... yes
checking for CGAL/version.h... yes
checking for x86_64-pc-linux-gnu-pkg-config... /usr/bin/x86_64-pc-linux-gnu-pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for CAIROMM... yes
checking python3.4 module: cairo... yes
checking pycairo/pycairo.h usability... yes
checking pycairo/pycairo.h presence... yes
checking for pycairo/pycairo.h... yes
checking whether to enable sparsehash...... yes
checking for SPARSEHASH... yes
checking sparsehash/dense_hash_set usability... yes
checking sparsehash/dense_hash_set presence... yes
checking for sparsehash/dense_hash_set... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/graph/Makefile
config.status: creating src/graph/centrality/Makefile
config.status: creating src/graph/clustering/Makefile
config.status: creating src/graph/community/Makefile
config.status: creating src/graph/correlations/Makefile
config.status: creating src/graph/draw/Makefile
config.status: creating src/graph/flow/Makefile
config.status: creating src/graph/generation/Makefile
config.status: creating src/graph/layout/Makefile
config.status: creating src/graph/search/Makefile
config.status: creating src/graph/spectral/Makefile
config.status: creating src/graph/stats/Makefile
config.status: creating src/graph/topology/Makefile
config.status: creating src/graph/util/Makefile
config.status: creating src/graph_tool/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
>>> Source configured.
>>> Compiling source in /var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44 ...
 [32;01m*[0m python2_7: running run_in_build_dir default
make -j2 -j1 
make  all-recursive
make[1]: Entering directory '/var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44-python2_7'
Making all in src
make[2]: Entering directory '/var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44-python2_7/src'
Making all in graph
make[3]: Entering directory '/var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44-python2_7/src/graph'
Making all in centrality
make[4]: Entering directory '/var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44-python2_7/src/graph/centrality'
/bin/sh ../../../libtool  --tag=CXX   --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../..  -I. -I./.. -I./../../boost-workaround -DHAVE_CONFIG_H -I/usr/include/python2.7 -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/lib64/python2.7/site-packages/scipy  -DSPARSEHASH_PREFIX=sparsehash  -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -pipe -DNDEBUG -std=gnu++11 -ftemplate-depth-250 -Wno-deprecated -Wno-unknown-pragmas -fvisibility=default -fvisibility-inlines-hidden -fopenmp  -DSPARSEHASH_PREFIX=sparsehash -c -o graph_betweenness.lo graph_betweenness.cc
libtool: compile:  x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -I. -I./.. -I./../../boost-workaround -DHAVE_CONFIG_H -I/usr/include/python2.7 -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/lib64/python2.7/site-packages/scipy -DSPARSEHASH_PREFIX=sparsehash -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -pipe -DNDEBUG -std=gnu++11 -ftemplate-depth-250 -Wno-deprecated -Wno-unknown-pragmas -fvisibility=default -fvisibility-inlines-hidden -fopenmp -DSPARSEHASH_PREFIX=sparsehash -c graph_betweenness.cc  -fPIC -DPIC -o .libs/graph_betweenness.o
/bin/sh ../../../libtool  --tag=CXX   --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../..  -I. -I./.. -I./../../boost-workaround -DHAVE_CONFIG_H -I/usr/include/python2.7 -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/lib64/python2.7/site-packages/scipy  -DSPARSEHASH_PREFIX=sparsehash  -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -pipe -DNDEBUG -std=gnu++11 -ftemplate-depth-250 -Wno-deprecated -Wno-unknown-pragmas -fvisibility=default -fvisibility-inlines-hidden -fopenmp  -DSPARSEHASH_PREFIX=sparsehash -c -o graph_centrality_bind.lo graph_centrality_bind.cc
libtool: compile:  x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -I. -I./.. -I./../../boost-workaround -DHAVE_CONFIG_H -I/usr/include/python2.7 -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/lib64/python2.7/site-packages/scipy -DSPARSEHASH_PREFIX=sparsehash -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -pipe -DNDEBUG -std=gnu++11 -ftemplate-depth-250 -Wno-deprecated -Wno-unknown-pragmas -fvisibility=default -fvisibility-inlines-hidden -fopenmp -DSPARSEHASH_PREFIX=sparsehash -c graph_centrality_bind.cc  -fPIC -DPIC -o .libs/graph_centrality_bind.o
/bin/sh ../../../libtool  --tag=CXX   --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../..  -I. -I./.. -I./../../boost-workaround -DHAVE_CONFIG_H -I/usr/include/python2.7 -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/lib64/python2.7/site-packages/scipy  -DSPARSEHASH_PREFIX=sparsehash  -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -pipe -DNDEBUG -std=gnu++11 -ftemplate-depth-250 -Wno-deprecated -Wno-unknown-pragmas -fvisibility=default -fvisibility-inlines-hidden -fopenmp  -DSPARSEHASH_PREFIX=sparsehash -c -o graph_closeness.lo graph_closeness.cc
libtool: compile:  x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -I. -I./.. -I./../../boost-workaround -DHAVE_CONFIG_H -I/usr/include/python2.7 -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/lib64/python2.7/site-packages/scipy -DSPARSEHASH_PREFIX=sparsehash -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -pipe -DNDEBUG -std=gnu++11 -ftemplate-depth-250 -Wno-deprecated -Wno-unknown-pragmas -fvisibility=default -fvisibility-inlines-hidden -fopenmp -DSPARSEHASH_PREFIX=sparsehash -c graph_closeness.cc  -fPIC -DPIC -o .libs/graph_closeness.o
/bin/sh ../../../libtool  --tag=CXX   --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../..  -I. -I./.. -I./../../boost-workaround -DHAVE_CONFIG_H -I/usr/include/python2.7 -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/lib64/python2.7/site-packages/scipy  -DSPARSEHASH_PREFIX=sparsehash  -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -pipe -DNDEBUG -std=gnu++11 -ftemplate-depth-250 -Wno-deprecated -Wno-unknown-pragmas -fvisibility=default -fvisibility-inlines-hidden -fopenmp  -DSPARSEHASH_PREFIX=sparsehash -c -o graph_eigentrust.lo graph_eigentrust.cc
libtool: compile:  x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -I. -I./.. -I./../../boost-workaround -DHAVE_CONFIG_H -I/usr/include/python2.7 -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/lib64/python2.7/site-packages/scipy -DSPARSEHASH_PREFIX=sparsehash -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -pipe -DNDEBUG -std=gnu++11 -ftemplate-depth-250 -Wno-deprecated -Wno-unknown-pragmas -fvisibility=default -fvisibility-inlines-hidden -fopenmp -DSPARSEHASH_PREFIX=sparsehash -c graph_eigentrust.cc  -fPIC -DPIC -o .libs/graph_eigentrust.o
/bin/sh ../../../libtool  --tag=CXX   --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../..  -I. -I./.. -I./../../boost-workaround -DHAVE_CONFIG_H -I/usr/include/python2.7 -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/lib64/python2.7/site-packages/scipy  -DSPARSEHASH_PREFIX=sparsehash  -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -pipe -DNDEBUG -std=gnu++11 -ftemplate-depth-250 -Wno-deprecated -Wno-unknown-pragmas -fvisibility=default -fvisibility-inlines-hidden -fopenmp  -DSPARSEHASH_PREFIX=sparsehash -c -o graph_eigenvector.lo graph_eigenvector.cc
libtool: compile:  x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -I. -I./.. -I./../../boost-workaround -DHAVE_CONFIG_H -I/usr/include/python2.7 -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/lib64/python2.7/site-packages/scipy -DSPARSEHASH_PREFIX=sparsehash -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -pipe -DNDEBUG -std=gnu++11 -ftemplate-depth-250 -Wno-deprecated -Wno-unknown-pragmas -fvisibility=default -fvisibility-inlines-hidden -fopenmp -DSPARSEHASH_PREFIX=sparsehash -c graph_eigenvector.cc  -fPIC -DPIC -o .libs/graph_eigenvector.o
/bin/sh ../../../libtool  --tag=CXX   --mode=compile x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../..  -I. -I./.. -I./../../boost-workaround -DHAVE_CONFIG_H -I/usr/include/python2.7 -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/lib64/python2.7/site-packages/scipy  -DSPARSEHASH_PREFIX=sparsehash  -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -pipe -DNDEBUG -std=gnu++11 -ftemplate-depth-250 -Wno-deprecated -Wno-unknown-pragmas -fvisibility=default -fvisibility-inlines-hidden -fopenmp  -DSPARSEHASH_PREFIX=sparsehash -c -o graph_hits.lo graph_hits.cc
libtool: compile:  x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../../.. -I. -I./.. -I./../../boost-workaround -DHAVE_CONFIG_H -I/usr/include/python2.7 -I/usr/include -I/usr/lib64/python2.7/site-packages/numpy/core/include -I/usr/lib64/python2.7/site-packages/scipy -DSPARSEHASH_PREFIX=sparsehash -Wall -Wextra -ftemplate-backtrace-limit=0 -march=native -O2 -pipe -DNDEBUG -std=gnu++11 -ftemplate-depth-250 -Wno-deprecated -Wno-unknown-pragmas -fvisibility=default -fvisibility-inlines-hidden -fopenmp -DSPARSEHASH_PREFIX=sparsehash -c graph_hits.cc  -fPIC -DPIC -o .libs/graph_hits.o
graph_hits.cc: In function ‘long double hits(graph_tool::GraphInterface&, boost::any, boost::any, boost::any, double, size_t)’:
graph_hits.cc:71:44: error: reference to ‘placeholders’ is ambiguous
         (g, std::bind(get_hits_dispatch(), placeholders::_1, g.GetVertexIndex(),
                                            ^
In file included from /usr/include/boost/bind/bind.hpp:2319:0,
                 from /usr/include/boost/bind.hpp:22,
                 from /usr/include/boost/python/exception_translator.hpp:10,
                 from /usr/include/boost/python.hpp:28,
                 from graph_hits.cc:20:
/usr/include/boost/bind/placeholders.hpp:30:1: note: candidates are: namespace boost::placeholders { }
 {
 ^
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/include/g++-v4/memory:79:0,
                 from /usr/include/boost/config/no_tr1/memory.hpp:21,
                 from /usr/include/boost/get_pointer.hpp:14,
                 from /usr/include/boost/python/object/pointer_holder.hpp:11,
                 from /usr/include/boost/python/to_python_indirect.hpp:10,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:10,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/object.hpp:9,
                 from ./../graph.hh:23,
                 from ./../graph_filtering.hh:21,
                 from graph_hits.cc:18:
/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/include/g++-v4/functional:966:3: note:                 namespace std::placeholders { }
   {
   ^
graph_hits.cc:72:23: error: reference to ‘placeholders’ is ambiguous
                       placeholders::_2,  placeholders::_3, y, epsilon, max_iter,
                       ^
In file included from /usr/include/boost/bind/bind.hpp:2319:0,
                 from /usr/include/boost/bind.hpp:22,
                 from /usr/include/boost/python/exception_translator.hpp:10,
                 from /usr/include/boost/python.hpp:28,
                 from graph_hits.cc:20:
/usr/include/boost/bind/placeholders.hpp:30:1: note: candidates are: namespace boost::placeholders { }
 {
 ^
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/include/g++-v4/memory:79:0,
                 from /usr/include/boost/config/no_tr1/memory.hpp:21,
                 from /usr/include/boost/get_pointer.hpp:14,
                 from /usr/include/boost/python/object/pointer_holder.hpp:11,
                 from /usr/include/boost/python/to_python_indirect.hpp:10,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:10,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/object.hpp:9,
                 from ./../graph.hh:23,
                 from ./../graph_filtering.hh:21,
                 from graph_hits.cc:18:
/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/include/g++-v4/functional:966:3: note:                 namespace std::placeholders { }
   {
   ^
graph_hits.cc:72:42: error: reference to ‘placeholders’ is ambiguous
                       placeholders::_2,  placeholders::_3, y, epsilon, max_iter,
                                          ^
In file included from /usr/include/boost/bind/bind.hpp:2319:0,
                 from /usr/include/boost/bind.hpp:22,
                 from /usr/include/boost/python/exception_translator.hpp:10,
                 from /usr/include/boost/python.hpp:28,
                 from graph_hits.cc:20:
/usr/include/boost/bind/placeholders.hpp:30:1: note: candidates are: namespace boost::placeholders { }
 {
 ^
In file included from /usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/include/g++-v4/memory:79:0,
                 from /usr/include/boost/config/no_tr1/memory.hpp:21,
                 from /usr/include/boost/get_pointer.hpp:14,
                 from /usr/include/boost/python/object/pointer_holder.hpp:11,
                 from /usr/include/boost/python/to_python_indirect.hpp:10,
                 from /usr/include/boost/python/converter/arg_to_python.hpp:10,
                 from /usr/include/boost/python/call.hpp:15,
                 from /usr/include/boost/python/object_core.hpp:14,
                 from /usr/include/boost/python/object.hpp:9,
                 from ./../graph.hh:23,
                 from ./../graph_filtering.hh:21,
                 from graph_hits.cc:18:
/usr/lib/gcc/x86_64-pc-linux-gnu/4.9.3/include/g++-v4/functional:966:3: note:                 namespace std::placeholders { }
   {
   ^
Makefile:522: recipe for target 'graph_hits.lo' failed
make[4]: *** [graph_hits.lo] Error 1
make[4]: Leaving directory '/var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44-python2_7/src/graph/centrality'
Makefile:710: recipe for target 'all-recursive' failed
make[3]: *** [all-recursive] Error 1
make[3]: Leaving directory '/var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44-python2_7/src/graph'
Makefile:404: recipe for target 'all-recursive' failed
make[2]: *** [all-recursive] Error 1
make[2]: Leaving directory '/var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44-python2_7/src'
Makefile:555: recipe for target 'all-recursive' failed
make[1]: *** [all-recursive] Error 1
make[1]: Leaving directory '/var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44-python2_7'
Makefile:463: recipe for target 'all' failed
make: *** [all] Error 2
 [31;01m*[0m ERROR: dev-python/graph-tool-2.2.44::gentoo-overlay failed (compile phase):
 [31;01m*[0m   emake failed
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of `emerge --info '=dev-python/graph-tool-2.2.44::gentoo-overlay'`,
 [31;01m*[0m the complete build log and the output of `emerge -pqv '=dev-python/graph-tool-2.2.44::gentoo-overlay'`.
 [31;01m*[0m The complete build log is located at '/var/tmp/portage/dev-python/graph-tool-2.2.44/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/dev-python/graph-tool-2.2.44/temp/environment'.
 [31;01m*[0m Working directory: '/var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44-python2_7'
 [31;01m*[0m S: '/var/tmp/portage/dev-python/graph-tool-2.2.44/work/graph-tool-2.2.44'