config.log

config.log (text/plain), 44.18 KB, created by Toralf Förster on 2016-10-02 21:09:00 UTC

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by configure, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  $ ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --docdir=/usr/share/doc/libmems-1.6_p1-r2 --htmldir=/usr/share/doc/libmems-1.6_p1-r2/html --libdir=/usr/lib64 --enable-shared --disable-static

## --------- ##
## Platform. ##
## --------- ##

hostname = mr-fox
uname -m = x86_64
uname -r = 4.7.6-hardened
uname -s = Linux
uname -v = #1 SMP Sat Oct 1 18:53:58 CEST 2016

/usr/bin/uname -p = Intel(R) Core(TM) i7-3930K CPU @ 3.20GHz
/bin/uname -X     = unknown

/bin/arch              = unknown
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /usr/lib/portage/python3.4/ebuild-helpers/xattr
PATH: /usr/lib/portage/python3.4/ebuild-helpers
PATH: /usr/local/sbin
PATH: /usr/local/bin
PATH: /usr/sbin
PATH: /usr/bin
PATH: /sbin
PATH: /bin
PATH: /opt/bin
PATH: /usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0
PATH: /usr/lib/plan9/bin
PATH: /opt/ekopath/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2555: checking for a BSD-compatible install
configure:2623: result: /usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c
configure:2634: checking whether build environment is sane
configure:2689: result: yes
configure:2840: checking for a thread-safe mkdir -p
configure:2879: result: /bin/mkdir -p
configure:2886: checking for gawk
configure:2902: found /usr/bin/gawk
configure:2913: result: gawk
configure:2924: checking whether make sets $(MAKE)
configure:2946: result: yes
configure:2975: checking whether make supports nested variables
configure:2992: result: yes
configure:3130: checking for x86_64-pc-linux-gnu-g++
configure:3146: found /usr/bin/x86_64-pc-linux-gnu-g++
configure:3157: result: x86_64-pc-linux-gnu-g++
configure:3228: checking for C++ compiler version
configure:3237: x86_64-pc-linux-gnu-g++ --version >&5
x86_64-pc-linux-gnu-g++ (Gentoo 6.2.0-r1 p1.1) 6.2.0
Copyright (C) 2016 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:3248: $? = 0
configure:3237: x86_64-pc-linux-gnu-g++ -v >&5
Using built-in specs.
COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0/x86_64-pc-linux-gnu-g++
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/6.2.0/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-6.2.0-r1/work/gcc-6.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/python --enable-languages=c,c++,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 6.2.0-r1 p1.1' --disable-esp --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --disable-multilib --with-multilib-list=m64 --disable-altivec --disable-fixed-point --enable-targets=all --disable-libgcj --enable-libgomp --disable-libmudflap --disable-libssp --disable-libcilkrts --disable-libmpx --enable-vtable-verify --enable-libvtv --enable-lto --without-isl --enable-libsanitizer --disable-default-pie --enable-default-ssp
Thread model: posix
gcc version 6.2.0 (Gentoo 6.2.0-r1 p1.1) 
configure:3248: $? = 0
configure:3237: x86_64-pc-linux-gnu-g++ -V >&5
x86_64-pc-linux-gnu-g++: error: unrecognized command line option '-V'
x86_64-pc-linux-gnu-g++: fatal error: no input files
compilation terminated.
configure:3248: $? = 1
configure:3237: x86_64-pc-linux-gnu-g++ -qversion >&5
x86_64-pc-linux-gnu-g++: error: unrecognized command line option '-qversion'; did you mean '--version'?
x86_64-pc-linux-gnu-g++: fatal error: no input files
compilation terminated.
configure:3248: $? = 1
configure:3268: checking whether the C++ compiler works
configure:3290: x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.cpp  >&5
configure:3294: $? = 0
configure:3342: result: yes
configure:3345: checking for C++ compiler default output file name
configure:3347: result: a.out
configure:3353: checking for suffix of executables
configure:3360: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.cpp  >&5
configure:3364: $? = 0
configure:3386: result: 
configure:3408: checking whether we are cross compiling
configure:3416: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.cpp  >&5
configure:3420: $? = 0
configure:3427: ./conftest
configure:3431: $? = 0
configure:3446: result: no
configure:3451: checking for suffix of object files
configure:3473: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe  conftest.cpp >&5
configure:3477: $? = 0
configure:3498: result: o
configure:3502: checking whether we are using the GNU C++ compiler
configure:3521: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe  conftest.cpp >&5
configure:3521: $? = 0
configure:3530: result: yes
configure:3539: checking whether x86_64-pc-linux-gnu-g++ accepts -g
configure:3559: x86_64-pc-linux-gnu-g++ -c -g  conftest.cpp >&5
configure:3559: $? = 0
configure:3600: result: yes
configure:3634: checking for style of include used by make
configure:3662: result: GNU
configure:3688: checking dependency style of x86_64-pc-linux-gnu-g++
configure:3799: result: none
configure:3815: checking whether ln -s works
configure:3819: result: yes
configure:3855: checking build system type
configure:3869: result: x86_64-pc-linux-gnu
configure:3889: checking host system type
configure:3902: result: x86_64-pc-linux-gnu
configure:3943: checking how to print strings
configure:3970: result: printf
configure:3999: checking for x86_64-pc-linux-gnu-gcc
configure:4015: found /usr/bin/x86_64-pc-linux-gnu-gcc
configure:4026: result: x86_64-pc-linux-gnu-gcc
configure:4295: checking for C compiler version
configure:4304: x86_64-pc-linux-gnu-gcc --version >&5
x86_64-pc-linux-gnu-gcc (Gentoo 6.2.0-r1 p1.1) 6.2.0
Copyright (C) 2016 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4315: $? = 0
configure:4304: x86_64-pc-linux-gnu-gcc -v >&5
Using built-in specs.
COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0/x86_64-pc-linux-gnu-gcc
COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/6.2.0/lto-wrapper
Target: x86_64-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-6.2.0-r1/work/gcc-6.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/python --enable-languages=c,c++,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 6.2.0-r1 p1.1' --disable-esp --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --disable-multilib --with-multilib-list=m64 --disable-altivec --disable-fixed-point --enable-targets=all --disable-libgcj --enable-libgomp --disable-libmudflap --disable-libssp --disable-libcilkrts --disable-libmpx --enable-vtable-verify --enable-libvtv --enable-lto --without-isl --enable-libsanitizer --disable-default-pie --enable-default-ssp
Thread model: posix
gcc version 6.2.0 (Gentoo 6.2.0-r1 p1.1) 
configure:4315: $? = 0
configure:4304: x86_64-pc-linux-gnu-gcc -V >&5
x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-V'
x86_64-pc-linux-gnu-gcc: fatal error: no input files
compilation terminated.
configure:4315: $? = 1
configure:4304: x86_64-pc-linux-gnu-gcc -qversion >&5
x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-qversion'; did you mean '--version'?
x86_64-pc-linux-gnu-gcc: fatal error: no input files
compilation terminated.
configure:4315: $? = 1
configure:4319: checking whether we are using the GNU C compiler
configure:4338: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:4338: $? = 0
configure:4347: result: yes
configure:4356: checking whether x86_64-pc-linux-gnu-gcc accepts -g
configure:4376: x86_64-pc-linux-gnu-gcc -c -g  conftest.c >&5
configure:4376: $? = 0
configure:4417: result: yes
configure:4434: checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89
configure:4497: x86_64-pc-linux-gnu-gcc  -c -march=native -O2 -pipe  conftest.c >&5
configure:4497: $? = 0
configure:4510: result: none needed
configure:4535: checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together
configure:4557: x86_64-pc-linux-gnu-gcc -c conftest.c -o conftest2.o
configure:4560: $? = 0
configure:4557: x86_64-pc-linux-gnu-gcc -c conftest.c -o conftest2.o
configure:4560: $? = 0
configure:4572: result: yes
configure:4591: checking dependency style of x86_64-pc-linux-gnu-gcc
configure:4702: result: none
configure:4717: checking for a sed that does not truncate output
configure:4781: result: /bin/sed
configure:4799: checking for grep that handles long lines and -e
configure:4857: result: /bin/grep
configure:4862: checking for egrep
configure:4924: result: /bin/grep -E
configure:4929: checking for fgrep
configure:4991: result: /bin/grep -F
configure:5026: checking for ld used by x86_64-pc-linux-gnu-gcc
configure:5093: result: /usr/x86_64-pc-linux-gnu/bin/ld
configure:5100: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld
configure:5115: result: yes
configure:5127: checking for BSD- or MS-compatible name lister (nm)
configure:5181: result: /usr/bin/x86_64-pc-linux-gnu-nm -B
configure:5311: checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface
configure:5318: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:5321: /usr/bin/x86_64-pc-linux-gnu-nm -B "conftest.o"
configure:5324: output
0000000000000000 B some_variable
configure:5331: result: BSD nm
configure:5335: checking the maximum length of command line arguments
configure:5466: result: 1572864
configure:5514: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format
configure:5554: result: func_convert_file_noop
configure:5561: checking how to convert x86_64-pc-linux-gnu file names to toolchain format
configure:5581: result: func_convert_file_noop
configure:5588: checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files
configure:5595: result: -r
configure:5629: checking for x86_64-pc-linux-gnu-objdump
configure:5645: found /usr/bin/x86_64-pc-linux-gnu-objdump
configure:5656: result: x86_64-pc-linux-gnu-objdump
configure:5728: checking how to recognize dependent libraries
configure:5928: result: pass_all
configure:5973: checking for x86_64-pc-linux-gnu-dlltool
configure:6003: result: no
configure:6013: checking for dlltool
configure:6043: result: no
configure:6073: checking how to associate runtime and link libraries
configure:6100: result: printf %s\n
configure:6117: checking for x86_64-pc-linux-gnu-ar
configure:6133: found /usr/bin/x86_64-pc-linux-gnu-ar
configure:6144: result: x86_64-pc-linux-gnu-ar
configure:6225: checking for archiver @FILE support
configure:6242: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:6242: $? = 0
configure:6245: x86_64-pc-linux-gnu-ar cru libconftest.a @conftest.lst >&5
configure:6248: $? = 0
configure:6253: x86_64-pc-linux-gnu-ar cru libconftest.a @conftest.lst >&5
x86_64-pc-linux-gnu-ar: conftest.o: No such file or directory
configure:6256: $? = 1
configure:6268: result: @
configure:6286: checking for x86_64-pc-linux-gnu-strip
configure:6302: found /usr/bin/x86_64-pc-linux-gnu-strip
configure:6313: result: x86_64-pc-linux-gnu-strip
configure:6385: checking for x86_64-pc-linux-gnu-ranlib
configure:6401: found /usr/bin/x86_64-pc-linux-gnu-ranlib
configure:6412: result: x86_64-pc-linux-gnu-ranlib
configure:6554: checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object
configure:6707: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:6710: $? = 0
configure:6714: /usr/bin/x86_64-pc-linux-gnu-nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:6717: $? = 0
configure:6783: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c conftstm.o >&5
configure:6786: $? = 0
configure:6824: result: ok
configure:6871: checking for sysroot
configure:6901: result: no
configure:6908: checking for a working dd
configure:6946: result: /bin/dd
configure:6950: checking how to truncate binary pipes
configure:6965: result: /bin/dd bs=4096 count=1
configure:7101: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:7104: $? = 0
configure:7254: checking for x86_64-pc-linux-gnu-mt
configure:7284: result: no
configure:7294: checking for mt
configure:7310: found /usr/sbin/mt
configure:7321: result: mt
configure:7344: checking if mt is a manifest tool
configure:7350: mt '-?'
usage: mt [-v] [--version] [-h] [ -f device ] command [ count ]
configure:7358: result: no
configure:8035: checking how to run the C preprocessor
configure:8066: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:8066: $? = 0
configure:8080: x86_64-pc-linux-gnu-gcc -E  conftest.c
conftest.c:9:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:8080: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:8105: result: x86_64-pc-linux-gnu-gcc -E
configure:8125: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:8125: $? = 0
configure:8139: x86_64-pc-linux-gnu-gcc -E  conftest.c
conftest.c:9:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:8139: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:8168: checking for ANSI C header files
configure:8188: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:8188: $? = 0
configure:8261: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c  >&5
configure:8261: $? = 0
configure:8261: ./conftest
configure:8261: $? = 0
configure:8272: result: yes
configure:8285: checking for sys/types.h
configure:8285: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:8285: $? = 0
configure:8285: result: yes
configure:8285: checking for sys/stat.h
configure:8285: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:8285: $? = 0
configure:8285: result: yes
configure:8285: checking for stdlib.h
configure:8285: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:8285: $? = 0
configure:8285: result: yes
configure:8285: checking for string.h
configure:8285: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:8285: $? = 0
configure:8285: result: yes
configure:8285: checking for memory.h
configure:8285: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:8285: $? = 0
configure:8285: result: yes
configure:8285: checking for strings.h
configure:8285: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:8285: $? = 0
configure:8285: result: yes
configure:8285: checking for inttypes.h
configure:8285: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:8285: $? = 0
configure:8285: result: yes
configure:8285: checking for stdint.h
configure:8285: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:8285: $? = 0
configure:8285: result: yes
configure:8285: checking for unistd.h
configure:8285: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:8285: $? = 0
configure:8285: result: yes
configure:8299: checking for dlfcn.h
configure:8299: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:8299: $? = 0
configure:8299: result: yes
configure:8566: checking for objdir
configure:8581: result: .libs
configure:8845: checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions
configure:8863: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C
configure:8867: $? = 0
configure:8880: result: no
configure:9238: checking for x86_64-pc-linux-gnu-gcc option to produce PIC
configure:9245: result: -fPIC -DPIC
configure:9253: checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works
configure:9271: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -fPIC -DPIC -DPIC conftest.c >&5
configure:9275: $? = 0
configure:9288: result: yes
configure:9317: checking if x86_64-pc-linux-gnu-gcc static flag -static works
configure:9345: result: yes
configure:9360: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o
configure:9381: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  -o out/conftest2.o conftest.c >&5
configure:9385: $? = 0
configure:9407: result: yes
configure:9415: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o
configure:9462: result: yes
configure:9495: checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries
configure:10754: result: yes
configure:10791: checking whether -lc should be explicitly linked in
configure:10799: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:10802: $? = 0
configure:10817: x86_64-pc-linux-gnu-gcc -shared  -fPIC -DPIC conftest.o  -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep  -lc  \>/dev/null 2\>\&1
configure:10820: $? = 0
configure:10834: result: no
configure:10994: checking dynamic linker characteristics
configure:11588: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed -Wl,-rpath -Wl,/foo conftest.c  >&5
configure:11588: $? = 0
configure:11825: result: GNU/Linux ld.so
configure:11947: checking how to hardcode library paths into programs
configure:11972: result: immediate
configure:12520: checking whether stripping libraries is possible
configure:12525: result: yes
configure:12560: checking if libtool supports shared libraries
configure:12562: result: yes
configure:12565: checking whether to build shared libraries
configure:12590: result: yes
configure:12593: checking whether to build static libraries
configure:12597: result: no
configure:12620: checking how to run the C++ preprocessor
configure:12647: x86_64-pc-linux-gnu-g++ -E  conftest.cpp
configure:12647: $? = 0
configure:12661: x86_64-pc-linux-gnu-g++ -E  conftest.cpp
conftest.cpp:21:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:12661: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:12686: result: x86_64-pc-linux-gnu-g++ -E
configure:12706: x86_64-pc-linux-gnu-g++ -E  conftest.cpp
configure:12706: $? = 0
configure:12720: x86_64-pc-linux-gnu-g++ -E  conftest.cpp
conftest.cpp:21:28: fatal error: ac_nonexistent.h: No such file or directory
 #include <ac_nonexistent.h>
                            ^
compilation terminated.
configure:12720: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:12882: checking for ld used by x86_64-pc-linux-gnu-g++
configure:12949: result: /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64
configure:12956: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld
configure:12971: result: yes
configure:13026: checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries
configure:14099: result: yes
configure:14135: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe  conftest.cpp >&5
configure:14138: $? = 0
configure:14619: checking for x86_64-pc-linux-gnu-g++ option to produce PIC
configure:14626: result: -fPIC -DPIC
configure:14634: checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works
configure:14652: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe  -fPIC -DPIC -DPIC conftest.cpp >&5
configure:14656: $? = 0
configure:14669: result: yes
configure:14692: checking if x86_64-pc-linux-gnu-g++ static flag -static works
configure:14720: result: yes
configure:14732: checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o
configure:14753: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe  -o out/conftest2.o conftest.cpp >&5
configure:14757: $? = 0
configure:14779: result: yes
configure:14784: checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o
configure:14831: result: yes
configure:14861: checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries
configure:14901: result: yes
configure:15042: checking dynamic linker characteristics
configure:15800: result: GNU/Linux ld.so
configure:15865: checking how to hardcode library paths into programs
configure:15890: result: immediate
configure:15958: checking for special C compiler options needed for large files
configure:16003: result: no
configure:16009: checking for _FILE_OFFSET_BITS value needed for large files
configure:16034: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:16034: $? = 0
configure:16066: result: no
configure:16152: checking for ANSI C header files
configure:16256: result: yes
configure:16329: checking for boostlib >= 1.34.0
configure:16379: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe  -I/usr/include conftest.cpp >&5
configure:16379: $? = 0
configure:16381: result: yes
configure:16513: checking whether the compiler implements namespaces
configure:16536: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe  conftest.cpp >&5
configure:16536: $? = 0
configure:16550: result: yes
configure:16589: checking whether the Boost::Filesystem library is available
configure:16613: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe  -I/usr/include conftest.cpp >&5
configure:16613: $? = 0
configure:16627: result: yes
configure:16638: checking for exit in -lboost_filesystem-mt
configure:16663: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -I/usr/include -Wl,-O1 -Wl,--as-needed -L/usr/lib conftest.c -lboost_filesystem-mt   >&5
conftest.c:32:6: warning: conflicting types for built-in function 'exit'
 char exit ();
      ^~~~
configure:16663: $? = 0
configure:16673: result: yes
configure:16819: checking whether the Boost::Program_Options library is available
configure:16843: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe  -I/usr/include conftest.cpp >&5
configure:16843: $? = 0
configure:16857: result: yes
configure:16868: checking for exit in -lboost_program_options-mt
configure:16893: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -I/usr/include -Wl,-O1 -Wl,--as-needed -L/usr/lib conftest.c -lboost_program_options-mt   >&5
conftest.c:33:6: warning: conflicting types for built-in function 'exit'
 char exit ();
      ^~~~
configure:16893: $? = 0
configure:16903: result: yes
configure:17042: checking whether the Boost::IOStreams library is available
configure:17070: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe  -I/usr/include conftest.cpp >&5
configure:17070: $? = 0
configure:17084: result: yes
configure:17095: checking for exit in -lboost_iostreams-mt
configure:17120: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -I/usr/include -Wl,-O1 -Wl,--as-needed -L/usr/lib conftest.c -lboost_iostreams-mt   >&5
conftest.c:34:6: warning: conflicting types for built-in function 'exit'
 char exit ();
      ^~~~
configure:17120: $? = 0
configure:17130: result: yes
configure:17273: checking whether the Boost::System library is available
configure:17297: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe  -I/usr/include conftest.cpp >&5
configure:17297: $? = 0
configure:17312: result: yes
configure:17327: checking for exit in -lboost_system-mt
configure:17352: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -I/usr/include -Wl,-O1 -Wl,--as-needed -L/usr/lib conftest.c -lboost_system-mt   >&5
conftest.c:35:6: warning: conflicting types for built-in function 'exit'
 char exit ();
      ^~~~
configure:17352: $? = 0
configure:17362: result: yes
configure:17486: checking for x86_64-pc-linux-gnu-pkg-config
configure:17504: found /usr/bin/x86_64-pc-linux-gnu-pkg-config
configure:17516: result: /usr/bin/x86_64-pc-linux-gnu-pkg-config
configure:17584: checking pkg-config is at least version 0.9.0
configure:17587: result: yes
configure:17598: checking for DEPS
configure:17606: $PKG_CONFIG --exists --print-errors "libGenome-1.3 >= 1.3.1  libMUSCLE-3.7 >= 1.0.0"
configure:17609: $? = 0
configure:17624: $PKG_CONFIG --exists --print-errors "libGenome-1.3 >= 1.3.1  libMUSCLE-3.7 >= 1.0.0"
configure:17627: $? = 0
configure:17682: result: yes
configure:17695: checking for sys/types.h
configure:17695: result: yes
configure:17707: checking sys/aio.h usability
configure:17707: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
conftest.c:62:21: fatal error: sys/aio.h: No such file or directory
 #include <sys/aio.h>
                     ^
compilation terminated.
configure:17707: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define STDC_HEADERS 1
| #define HAVE_BOOST /**/
| #define HAVE_NAMESPACES /**/
| #define HAVE_BOOST_FILESYSTEM /**/
| #define HAVE_BOOST_PROGRAM_OPTIONS /**/
| #define HAVE_BOOST_IOSTREAMS /**/
| #define HAVE_BOOST_SYSTEM /**/
| #define HAVE_SYS_TYPES_H 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include <sys/aio.h>
configure:17707: result: no
configure:17707: checking sys/aio.h presence
configure:17707: x86_64-pc-linux-gnu-gcc -E  conftest.c
conftest.c:29:21: fatal error: sys/aio.h: No such file or directory
 #include <sys/aio.h>
                     ^
compilation terminated.
configure:17707: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE_URL ""
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define STDC_HEADERS 1
| #define HAVE_BOOST /**/
| #define HAVE_NAMESPACES /**/
| #define HAVE_BOOST_FILESYSTEM /**/
| #define HAVE_BOOST_PROGRAM_OPTIONS /**/
| #define HAVE_BOOST_IOSTREAMS /**/
| #define HAVE_BOOST_SYSTEM /**/
| #define HAVE_SYS_TYPES_H 1
| /* end confdefs.h.  */
| #include <sys/aio.h>
configure:17707: result: no
configure:17707: checking for sys/aio.h
configure:17707: result: no
configure:17719: checking aio.h usability
configure:17719: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:17719: $? = 0
configure:17719: result: yes
configure:17719: checking aio.h presence
configure:17719: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:17719: $? = 0
configure:17719: result: yes
configure:17719: checking for aio.h
configure:17719: result: yes
configure:17731: checking features.h usability
configure:17731: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:17731: $? = 0
configure:17731: result: yes
configure:17731: checking features.h presence
configure:17731: x86_64-pc-linux-gnu-gcc -E  conftest.c
configure:17731: $? = 0
configure:17731: result: yes
configure:17731: checking for features.h
configure:17731: result: yes
configure:17742: checking for pthread_mutex_unlock in -lpthread
configure:17767: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c -lpthread   >&5
configure:17767: $? = 0
configure:17776: result: yes
configure:17787: checking for aio_write in -lrt
configure:17812: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe  -Wl,-O1 -Wl,--as-needed conftest.c -lrt  -lpthread  >&5
configure:17812: $? = 0
configure:17821: result: yes
configure:17890: checking for x86_64-pc-linux-gnu-doxygen
configure:17923: result: no
configure:17933: checking for doxygen
configure:17966: result: no
configure:17986: WARNING: doxygen not found - will not generate any doxygen documentation
configure:17996: checking for x86_64-pc-linux-gnu-perl
configure:18029: result: no
configure:18039: checking for perl
configure:18057: found /usr/bin/perl
configure:18069: result: /usr/bin/perl
configure:19755: checking for an ANSI C-conforming const
configure:19821: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:19821: $? = 0
configure:19828: result: yes
configure:19836: checking for inline
configure:19852: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:19852: $? = 0
configure:19860: result: inline
configure:19878: checking whether time.h and sys/time.h may both be included
configure:19898: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe  conftest.c >&5
configure:19898: $? = 0
configure:19905: result: yes
configure:19915: checking whether x86_64-pc-linux-gnu-gcc needs -traditional
configure:19949: result: no
configure:20069: checking that generated files are newer than configure
configure:20075: result: done
configure:20198: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by config.status, which was
generated by GNU Autoconf 2.69.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on mr-fox

config.status:1228: creating Makefile
config.status:1228: creating libMems/Makefile
config.status:1228: creating libMems-1.6.pc
config.status:1228: creating config.h
config.status:1457: executing depfiles commands
config.status:1457: executing libtool commands

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-pc-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_c_inline=inline
ac_cv_cxx_compiler_gnu=yes
ac_cv_cxx_namespaces=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-march=native -O2 -pipe'
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=set
ac_cv_env_CXXFLAGS_value='-march=native -O2 -pipe'
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_DEPS_CFLAGS_set=
ac_cv_env_DEPS_CFLAGS_value=
ac_cv_env_DEPS_LIBS_set=
ac_cv_env_DEPS_LIBS_value=
ac_cv_env_DOXYGEN_PAPER_SIZE_set=
ac_cv_env_DOXYGEN_PAPER_SIZE_value=
ac_cv_env_LDFLAGS_set=set
ac_cv_env_LDFLAGS_value='-Wl,-O1 -Wl,--as-needed'
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_LT_SYS_LIBRARY_PATH_set=
ac_cv_env_LT_SYS_LIBRARY_PATH_value=
ac_cv_env_PKG_CONFIG_set=
ac_cv_env_PKG_CONFIG_value=
ac_cv_env_build_alias_set=set
ac_cv_env_build_alias_value=x86_64-pc-linux-gnu
ac_cv_env_host_alias_set=set
ac_cv_env_host_alias_value=x86_64-pc-linux-gnu
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_header_aio_h=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_features_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_aio_h=no
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_time=yes
ac_cv_header_unistd_h=yes
ac_cv_host=x86_64-pc-linux-gnu
ac_cv_lib_boost_filesystem_mt___exit=yes
ac_cv_lib_boost_iostreams_mt___exit=yes
ac_cv_lib_boost_program_options_mt___exit=yes
ac_cv_lib_boost_system_mt___exit=yes
ac_cv_lib_pthread_pthread_mutex_unlock=yes
ac_cv_lib_rt_aio_write=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_FGREP='/bin/grep -F'
ac_cv_path_GREP=/bin/grep
ac_cv_path_PKG_CONFIG=/usr/bin/x86_64-pc-linux-gnu-pkg-config
ac_cv_path_SED=/bin/sed
ac_cv_path_ac_pt_DX_PERL=/usr/bin/perl
ac_cv_path_install='/usr/lib/portage/python3.4/ebuild-helpers/xattr/install -c'
ac_cv_path_lt_DD=/bin/dd
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AR=x86_64-pc-linux-gnu-ar
ac_cv_prog_AWK=gawk
ac_cv_prog_CC=x86_64-pc-linux-gnu-gcc
ac_cv_prog_CPP='x86_64-pc-linux-gnu-gcc -E'
ac_cv_prog_CXX=x86_64-pc-linux-gnu-g++
ac_cv_prog_CXXCPP='x86_64-pc-linux-gnu-g++ -E'
ac_cv_prog_OBJDUMP=x86_64-pc-linux-gnu-objdump
ac_cv_prog_RANLIB=x86_64-pc-linux-gnu-ranlib
ac_cv_prog_STRIP=x86_64-pc-linux-gnu-strip
ac_cv_prog_ac_ct_MANIFEST_TOOL=mt
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_gcc_traditional=no
ac_cv_prog_make_make_set=yes
ac_cv_sys_file_offset_bits=no
ac_cv_sys_largefile_CC=no
am_cv_CC_dependencies_compiler_type=none
am_cv_CXX_dependencies_compiler_type=none
am_cv_make_support_nested_variables=yes
am_cv_prog_cc_c_o=yes
ax_cv_boost_filesystem=yes
ax_cv_boost_iostreams=yes
ax_cv_boost_program_options=yes
ax_cv_boost_system=yes
lt_cv_ar_at_file=@
lt_cv_archive_cmds_need_lc=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/x86_64-pc-linux-gnu/bin/ld
lt_cv_path_LDCXX='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64'
lt_cv_path_NM='/usr/bin/x86_64-pc-linux-gnu-nm -B'
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_pic='-fPIC -DPIC'
lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC'
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=yes
lt_cv_prog_compiler_static_works_CXX=yes
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_shlibpath_overrides_runpath=yes
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[	 ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[	 ][	 ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/  {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/  {"\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/  {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/  {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/  {"lib\1", (void *) \&\1},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_global_symbol_to_import=
lt_cv_sys_max_cmd_len=1572864
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
lt_cv_truncate_bin='/bin/dd bs=4096 count=1'
pkg_cv_DEPS_CFLAGS='-I/usr/include/libGenome-1.3 -I/usr/include/libMUSCLE-3.7'
pkg_cv_DEPS_LIBS='-lGenome-1.3 -lMUSCLE-3.7'

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /var/tmp/portage/sci-libs/libmems-1.6_p1-r2/work/libmems-1.6_p1/config/missing aclocal-1.15'
AMDEPBACKSLASH=''
AMDEP_FALSE=''
AMDEP_TRUE='#'
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)'
AM_DEFAULT_VERBOSITY='1'
AM_V='$(V)'
AR='x86_64-pc-linux-gnu-ar'
AUTOCONF='${SHELL} /var/tmp/portage/sci-libs/libmems-1.6_p1-r2/work/libmems-1.6_p1/config/missing autoconf'
AUTOHEADER='${SHELL} /var/tmp/portage/sci-libs/libmems-1.6_p1-r2/work/libmems-1.6_p1/config/missing autoheader'
AUTOMAKE='${SHELL} /var/tmp/portage/sci-libs/libmems-1.6_p1-r2/work/libmems-1.6_p1/config/missing automake-1.15'
AWK='gawk'
BOOST_CPPFLAGS='-I/usr/include'
BOOST_FILESYSTEM_LIB='-lboost_filesystem-mt'
BOOST_IOSTREAMS_LIB='-lboost_iostreams-mt'
BOOST_LDFLAGS='-L/usr/lib'
BOOST_PROGRAM_OPTIONS_LIB='-lboost_program_options-mt'
BOOST_SYSTEM_LIB='-lboost_system-mt'
CC='x86_64-pc-linux-gnu-gcc'
CCDEPMODE='depmode=none'
CFLAGS='-march=native -O2 -pipe'
CPP='x86_64-pc-linux-gnu-gcc -E'
CPPFLAGS=''
CXX='x86_64-pc-linux-gnu-g++'
CXXCPP='x86_64-pc-linux-gnu-g++ -E'
CXXDEPMODE='depmode=none'
CXXFLAGS='-march=native -O2 -pipe'
CYGPATH_W='echo'
DEBUG_FALSE=''
DEBUG_TRUE='#'
DEFS='-DHAVE_CONFIG_H'
DEPDIR='.deps'
DEPS_CFLAGS='-I/usr/include/libGenome-1.3 -I/usr/include/libMUSCLE-3.7'
DEPS_LIBS='-lGenome-1.3 -lMUSCLE-3.7'
DLLTOOL='false'
DOXYGEN_PAPER_SIZE=''
DSYMUTIL=''
DUMPBIN=''
DX_COND_chi_FALSE=''
DX_COND_chi_TRUE='#'
DX_COND_chm_FALSE=''
DX_COND_chm_TRUE='#'
DX_COND_doc_FALSE=''
DX_COND_doc_TRUE='#'
DX_COND_dot_FALSE=''
DX_COND_dot_TRUE='#'
DX_COND_html_FALSE=''
DX_COND_html_TRUE='#'
DX_COND_latex_FALSE=''
DX_COND_latex_TRUE='#'
DX_COND_man_FALSE=''
DX_COND_man_TRUE='#'
DX_COND_pdf_FALSE=''
DX_COND_pdf_TRUE='#'
DX_COND_ps_FALSE=''
DX_COND_ps_TRUE='#'
DX_COND_rtf_FALSE=''
DX_COND_rtf_TRUE='#'
DX_COND_xml_FALSE=''
DX_COND_xml_TRUE='#'
DX_CONFIG='projects/libMems.doxygen'
DX_DOCDIR='doc'
DX_DOT=''
DX_DOXYGEN=''
DX_DVIPS=''
DX_EGREP=''
DX_ENV=' SRCDIR='\''.'\'' PROJECT='\''libMems'\'' DOCDIR='\''doc'\'' VERSION='\'''\'' HAVE_DOT='\''NO'\'' GENERATE_MAN='\''NO'\'' GENERATE_RTF='\''NO'\'' GENERATE_XML='\''NO'\'' GENERATE_HTMLHELP='\''NO'\'' GENERATE_CHI='\''NO'\'' GENERATE_HTML='\''NO'\'' GENERATE_LATEX='\''NO'\'''
DX_FLAG_chi='0'
DX_FLAG_chm='0'
DX_FLAG_doc='0'
DX_FLAG_dot='0'
DX_FLAG_html='0'
DX_FLAG_man='0'
DX_FLAG_pdf='0'
DX_FLAG_ps='0'
DX_FLAG_rtf='0'
DX_FLAG_xml='0'
DX_HHC=''
DX_LATEX=''
DX_MAKEINDEX=''
DX_PDFLATEX=''
DX_PERL='/usr/bin/perl'
DX_PROJECT='libMems'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EXEEXT=''
EXTRA_CXX_FLAGS=''
FGREP='/bin/grep -F'
GENERIC_API_VERSION='1.6'
GENERIC_LIBRARY_NAME='libMems'
GENERIC_LIBRARY_VERSION='1:0:0'
GENERIC_RELEASE='1.6'
GENERIC_VERSION='1.6.0'
GREP='/bin/grep'
ICC_FALSE=''
ICC_TRUE='#'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LD='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64'
LDFLAGS='-Wl,-O1 -Wl,--as-needed'
LIBOBJS=''
LIBS='-lrt -lpthread '
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIBTOOL_VERSION_INFO=''
LIPO=''
LN_S='ln -s'
LTLIBOBJS=''
LT_SYS_LIBRARY_PATH=''
MAKEINFO='${SHELL} /var/tmp/portage/sci-libs/libmems-1.6_p1-r2/work/libmems-1.6_p1/config/missing makeinfo'
MANIFEST_TOOL=':'
MKDIR_P='/bin/mkdir -p'
NM='/usr/bin/x86_64-pc-linux-gnu-nm -B'
NMEDIT=''
OBJDUMP='x86_64-pc-linux-gnu-objdump'
OBJEXT='o'
OPENMP_CFLAGS=''
OPENMP_CXXFLAGS=''
OTOOL64=''
OTOOL=''
PACKAGE='libMems'
PACKAGE_BUGREPORT=''
PACKAGE_NAME=''
PACKAGE_STRING=''
PACKAGE_TARNAME=''
PACKAGE_URL=''
PACKAGE_VERSION=''
PATH_SEPARATOR=':'
PKG_CONFIG='/usr/bin/x86_64-pc-linux-gnu-pkg-config'
RANLIB='x86_64-pc-linux-gnu-ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='x86_64-pc-linux-gnu-strip'
VERSION='1.6.0'
ac_ct_AR=''
ac_ct_CC=''
ac_ct_CXX=''
ac_ct_DUMPBIN=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE=''
am__fastdepCC_TRUE='#'
am__fastdepCXX_FALSE=''
am__fastdepCXX_TRUE='#'
am__include='include'
am__isrc=''
am__leading_dot='.'
am__nodep=''
am__quote=''
am__tar='$${TAR-tar} chof - "$$tardir"'
am__untar='$${TAR-tar} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-pc-linux-gnu'
build_alias='x86_64-pc-linux-gnu'
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='pc'
datadir='/usr/share'
datarootdir='${prefix}/share'
docdir='/usr/share/doc/libmems-1.6_p1-r2'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='x86_64-pc-linux-gnu'
host_alias='x86_64-pc-linux-gnu'
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='pc'
htmldir='/usr/share/doc/libmems-1.6_p1-r2/html'
includedir='${prefix}/include'
infodir='/usr/share/info'
install_sh='${SHELL} /var/tmp/portage/sci-libs/libmems-1.6_p1-r2/work/libmems-1.6_p1/config/install-sh'
libdir='/usr/lib64'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='/var/lib'
mandir='/usr/share/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

/* confdefs.h */
#define PACKAGE_NAME ""
#define PACKAGE_TARNAME ""
#define PACKAGE_VERSION ""
#define PACKAGE_STRING ""
#define PACKAGE_BUGREPORT ""
#define PACKAGE_URL ""
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define STDC_HEADERS 1
#define HAVE_BOOST /**/
#define HAVE_NAMESPACES /**/
#define HAVE_BOOST_FILESYSTEM /**/
#define HAVE_BOOST_PROGRAM_OPTIONS /**/
#define HAVE_BOOST_IOSTREAMS /**/
#define HAVE_BOOST_SYSTEM /**/
#define HAVE_SYS_TYPES_H 1
#define HAVE_AIO_H 1
#define HAVE_FEATURES_H 1
#define HAVE_LIBPTHREAD 1
#define HAVE_LIBRT 1
#define TIME_WITH_SYS_TIME 1

configure: exit 0