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Gentoo's Bugzilla – Attachment 447966 Details for
Bug 595154
sci-biology/goby-cpp-2.0.1 : configure: error: Package requirements (libpcrecpp >= 8.10) were not met:
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config.log
config.log (text/plain), 50.15 KB, created by
Toralf Förster
on 2016-09-26 07:44:59 UTC
(
hide
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Description:
config.log
Filename:
MIME Type:
Creator:
Toralf Förster
Created:
2016-09-26 07:44:59 UTC
Size:
50.15 KB
patch
obsolete
>This file contains any messages produced by compilers while >running configure, to aid debugging if configure makes a mistake. > >It was created by Goby configure 2.0.1, which was >generated by GNU Autoconf 2.69. Invocation command line was > > $ /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --disable-dependency-tracking --disable-silent-rules --libdir=/usr/lib64 --docdir=/usr/share/doc/goby-cpp-2.0.1 --enable-shared --disable-static > >## --------- ## >## Platform. ## >## --------- ## > >hostname = mr-fox >uname -m = x86_64 >uname -r = 4.7.4-hardened-r1 >uname -s = Linux >uname -v = #1 SMP Thu Sep 22 18:21:40 CEST 2016 > >/usr/bin/uname -p = Intel(R) Core(TM) i7-3930K CPU @ 3.20GHz >/bin/uname -X = unknown > >/bin/arch = unknown >/usr/bin/arch -k = unknown >/usr/convex/getsysinfo = unknown >/usr/bin/hostinfo = unknown >/bin/machine = unknown >/usr/bin/oslevel = unknown >/bin/universe = unknown > >PATH: /usr/lib/portage/python2.7/ebuild-helpers/xattr >PATH: /usr/lib/portage/python2.7/ebuild-helpers >PATH: /usr/local/sbin >PATH: /usr/local/bin >PATH: /usr/sbin >PATH: /usr/bin >PATH: /sbin >PATH: /bin >PATH: /opt/bin >PATH: /usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0 >PATH: /opt/nvidia-cg-toolkit/bin > > >## ----------- ## >## Core tests. ## >## ----------- ## > >configure:2631: loading site script /usr/share/config.site >| #!/bin/sh >| # Copyright 2009-2014 Gentoo Foundation >| # Distributed under the terms of the GNU General Public License v2 >| >| TOPDIR=/usr/share/crossdev/include/site >| >| config_site_arch() { >| local host="${CHOST%%-*}" >| >| case ${host} in >| arm*b*) host=armeb ;; >| arm*) host=arm ;; >| mips*l*) host=mipsel ;; >| mips*) host=mips ;; >| esac >| >| echo "${host}" >| } >| >| config_site_names() { >| local site_arch="$(config_site_arch)" >| local sites="" >| local x >| >| case ${CHOST} in >| *-linux-*) sites="${sites} linux ${site_arch}-linux" ;; >| *-darwin*) sites="${sites} darwin ${site_arch}-darwin" ;; >| esac >| >| case ${CHOST} in >| *-linux-uclibc*) sites="${sites} linux-uclibc ${site_arch}-linux-uclibc" ;; >| *-linux-gnu*) sites="${sites} linux-gnu ${site_arch}-linux-gnu" ;; >| *-linux-musl*) sites="${sites} linux-musl ${site_arch}-linux-musl" ;; >| esac >| >| case ${CHOST} in >| *-linux-uclibceabi*) sites="${sites} linux-uclibceabi ${site_arch}-linux-uclibceabi" ;; >| *-linux-gnueabi*) sites="${sites} linux-gnueabi ${site_arch}-linux-gnueabi" ;; >| esac >| >| for x in ${sites} ${CHOST}; do >| [ -e "${TOPDIR}/${x}" ] && echo "${TOPDIR}/${x}" >| done >| } >| >| # Only kick in for cross-compiles so we don't break native builds #427184 >| if [ "${CBUILD:-${CHOST}}" != "${CHOST}" ] ; then >| sites="$(config_site_names)" >| if [ -n "${sites}" ] ; then >| for site in ${sites}; do >| echo "${0##*/}: loading site script ${site}" >| . "${site}" >| done >| fi >| unset site sites >| fi >configure:2765: checking build system type >configure:2779: result: x86_64-pc-linux-gnu >configure:2799: checking host system type >configure:2812: result: x86_64-pc-linux-gnu >configure:2832: checking target system type >configure:2845: result: x86_64-pc-linux-gnu >configure:2887: checking for a BSD-compatible install >configure:2955: result: /usr/lib/portage/python2.7/ebuild-helpers/xattr/install -c >configure:2966: checking whether build environment is sane >configure:3021: result: yes >configure:3172: checking for a thread-safe mkdir -p >configure:3211: result: /bin/mkdir -p >configure:3218: checking for gawk >configure:3234: found /usr/bin/gawk >configure:3245: result: gawk >configure:3256: checking whether make sets $(MAKE) >configure:3278: result: yes >configure:3307: checking whether make supports nested variables >configure:3324: result: yes >configure:3475: checking for x86_64-pc-linux-gnu-g++ >configure:3491: found /usr/bin/x86_64-pc-linux-gnu-g++ >configure:3502: result: x86_64-pc-linux-gnu-g++ >configure:3573: checking for C++ compiler version >configure:3582: x86_64-pc-linux-gnu-g++ --version >&5 >x86_64-pc-linux-gnu-g++ (Gentoo 6.2.0-r1 p1.1) 6.2.0 >Copyright (C) 2016 Free Software Foundation, Inc. >This is free software; see the source for copying conditions. There is NO >warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. > >configure:3593: $? = 0 >configure:3582: x86_64-pc-linux-gnu-g++ -v >&5 >Using built-in specs. >COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0/x86_64-pc-linux-gnu-g++ >COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/6.2.0/lto-wrapper >Target: x86_64-pc-linux-gnu >Configured with: /var/tmp/portage/sys-devel/gcc-6.2.0-r1/work/gcc-6.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/python --enable-languages=c,c++,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 6.2.0-r1 p1.1' --disable-esp --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-altivec --disable-fixed-point --enable-targets=all --disable-libgcj --enable-libgomp --disable-libmudflap --disable-libssp --disable-libcilkrts --disable-libmpx --enable-vtable-verify --enable-libvtv --enable-lto --without-isl --enable-libsanitizer --disable-default-pie --disable-default-ssp >Thread model: posix >gcc version 6.2.0 (Gentoo 6.2.0-r1 p1.1) >configure:3593: $? = 0 >configure:3582: x86_64-pc-linux-gnu-g++ -V >&5 >x86_64-pc-linux-gnu-g++: error: unrecognized command line option '-V' >x86_64-pc-linux-gnu-g++: fatal error: no input files >compilation terminated. >configure:3593: $? = 1 >configure:3582: x86_64-pc-linux-gnu-g++ -qversion >&5 >x86_64-pc-linux-gnu-g++: error: unrecognized command line option '-qversion'; did you mean '--version'? >x86_64-pc-linux-gnu-g++: fatal error: no input files >compilation terminated. >configure:3593: $? = 1 >configure:3613: checking whether the C++ compiler works >configure:3635: x86_64-pc-linux-gnu-g++ -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:3639: $? = 0 >configure:3687: result: yes >configure:3690: checking for C++ compiler default output file name >configure:3692: result: a.out >configure:3698: checking for suffix of executables >configure:3705: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:3709: $? = 0 >configure:3731: result: >configure:3753: checking whether we are cross compiling >configure:3761: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:3765: $? = 0 >configure:3772: ./conftest >configure:3776: $? = 0 >configure:3791: result: no >configure:3796: checking for suffix of object files >configure:3818: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:3822: $? = 0 >configure:3843: result: o >configure:3847: checking whether we are using the GNU C++ compiler >configure:3866: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:3866: $? = 0 >configure:3875: result: yes >configure:3884: checking whether x86_64-pc-linux-gnu-g++ accepts -g >configure:3904: x86_64-pc-linux-gnu-g++ -c -g conftest.cpp >&5 >configure:3904: $? = 0 >configure:3945: result: yes >configure:3979: checking for style of include used by make >configure:4007: result: GNU >configure:4033: checking dependency style of x86_64-pc-linux-gnu-g++ >configure:4144: result: none >configure:4167: checking for x86_64-pc-linux-gnu-gcc >configure:4183: found /usr/bin/x86_64-pc-linux-gnu-gcc >configure:4194: result: x86_64-pc-linux-gnu-gcc >configure:4463: checking for C compiler version >configure:4472: x86_64-pc-linux-gnu-gcc --version >&5 >x86_64-pc-linux-gnu-gcc (Gentoo 6.2.0-r1 p1.1) 6.2.0 >Copyright (C) 2016 Free Software Foundation, Inc. >This is free software; see the source for copying conditions. There is NO >warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. > >configure:4483: $? = 0 >configure:4472: x86_64-pc-linux-gnu-gcc -v >&5 >Using built-in specs. >COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0/x86_64-pc-linux-gnu-gcc >COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/6.2.0/lto-wrapper >Target: x86_64-pc-linux-gnu >Configured with: /var/tmp/portage/sys-devel/gcc-6.2.0-r1/work/gcc-6.2.0/configure --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/6.2.0 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/6.2.0/include/g++-v6 --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/6.2.0/python --enable-languages=c,c++,fortran --enable-obsolete --enable-secureplt --disable-werror --with-system-zlib --enable-nls --without-included-gettext --enable-checking=release --with-bugurl=https://bugs.gentoo.org/ --with-pkgversion='Gentoo 6.2.0-r1 p1.1' --disable-esp --enable-libstdcxx-time --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-multilib --with-multilib-list=m32,m64 --disable-altivec --disable-fixed-point --enable-targets=all --disable-libgcj --enable-libgomp --disable-libmudflap --disable-libssp --disable-libcilkrts --disable-libmpx --enable-vtable-verify --enable-libvtv --enable-lto --without-isl --enable-libsanitizer --disable-default-pie --disable-default-ssp >Thread model: posix >gcc version 6.2.0 (Gentoo 6.2.0-r1 p1.1) >configure:4483: $? = 0 >configure:4472: x86_64-pc-linux-gnu-gcc -V >&5 >x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-V' >x86_64-pc-linux-gnu-gcc: fatal error: no input files >compilation terminated. >configure:4483: $? = 1 >configure:4472: x86_64-pc-linux-gnu-gcc -qversion >&5 >x86_64-pc-linux-gnu-gcc: error: unrecognized command line option '-qversion'; did you mean '--version'? >x86_64-pc-linux-gnu-gcc: fatal error: no input files >compilation terminated. >configure:4483: $? = 1 >configure:4487: checking whether we are using the GNU C compiler >configure:4506: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:4506: $? = 0 >configure:4515: result: yes >configure:4524: checking whether x86_64-pc-linux-gnu-gcc accepts -g >configure:4544: x86_64-pc-linux-gnu-gcc -c -g conftest.c >&5 >configure:4544: $? = 0 >configure:4585: result: yes >configure:4602: checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89 >configure:4665: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:4665: $? = 0 >configure:4678: result: none needed >configure:4703: checking whether x86_64-pc-linux-gnu-gcc understands -c and -o together >configure:4725: x86_64-pc-linux-gnu-gcc -c conftest.c -o conftest2.o >configure:4728: $? = 0 >configure:4725: x86_64-pc-linux-gnu-gcc -c conftest.c -o conftest2.o >configure:4728: $? = 0 >configure:4740: result: yes >configure:4759: checking dependency style of x86_64-pc-linux-gnu-gcc >configure:4870: result: none >configure:4932: checking how to print strings >configure:4959: result: printf >configure:4980: checking for a sed that does not truncate output >configure:5044: result: /bin/sed >configure:5062: checking for grep that handles long lines and -e >configure:5120: result: /bin/grep >configure:5125: checking for egrep >configure:5187: result: /bin/grep -E >configure:5192: checking for fgrep >configure:5254: result: /bin/grep -F >configure:5289: checking for ld used by x86_64-pc-linux-gnu-gcc >configure:5356: result: /usr/x86_64-pc-linux-gnu/bin/ld >configure:5363: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld >configure:5378: result: yes >configure:5390: checking for BSD- or MS-compatible name lister (nm) >configure:5444: result: /usr/bin/x86_64-pc-linux-gnu-nm -B >configure:5574: checking the name lister (/usr/bin/x86_64-pc-linux-gnu-nm -B) interface >configure:5581: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:5584: /usr/bin/x86_64-pc-linux-gnu-nm -B "conftest.o" >configure:5587: output >0000000000000000 B some_variable >configure:5594: result: BSD nm >configure:5597: checking whether ln -s works >configure:5601: result: yes >configure:5609: checking the maximum length of command line arguments >configure:5740: result: 1572864 >configure:5788: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format >configure:5828: result: func_convert_file_noop >configure:5835: checking how to convert x86_64-pc-linux-gnu file names to toolchain format >configure:5855: result: func_convert_file_noop >configure:5862: checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files >configure:5869: result: -r >configure:5903: checking for x86_64-pc-linux-gnu-objdump >configure:5919: found /usr/bin/x86_64-pc-linux-gnu-objdump >configure:5930: result: x86_64-pc-linux-gnu-objdump >configure:6002: checking how to recognize dependent libraries >configure:6202: result: pass_all >configure:6247: checking for x86_64-pc-linux-gnu-dlltool >configure:6277: result: no >configure:6287: checking for dlltool >configure:6317: result: no >configure:6347: checking how to associate runtime and link libraries >configure:6374: result: printf %s\n >configure:6391: checking for x86_64-pc-linux-gnu-ar >configure:6407: found /usr/bin/x86_64-pc-linux-gnu-ar >configure:6418: result: x86_64-pc-linux-gnu-ar >configure:6499: checking for archiver @FILE support >configure:6516: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:6516: $? = 0 >configure:6519: x86_64-pc-linux-gnu-ar cru libconftest.a @conftest.lst >&5 >configure:6522: $? = 0 >configure:6527: x86_64-pc-linux-gnu-ar cru libconftest.a @conftest.lst >&5 >x86_64-pc-linux-gnu-ar: conftest.o: No such file or directory >configure:6530: $? = 1 >configure:6542: result: @ >configure:6560: checking for x86_64-pc-linux-gnu-strip >configure:6576: found /usr/bin/x86_64-pc-linux-gnu-strip >configure:6587: result: x86_64-pc-linux-gnu-strip >configure:6659: checking for x86_64-pc-linux-gnu-ranlib >configure:6675: found /usr/bin/x86_64-pc-linux-gnu-ranlib >configure:6686: result: x86_64-pc-linux-gnu-ranlib >configure:6828: checking command to parse /usr/bin/x86_64-pc-linux-gnu-nm -B output from x86_64-pc-linux-gnu-gcc object >configure:6981: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:6984: $? = 0 >configure:6988: /usr/bin/x86_64-pc-linux-gnu-nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm >configure:6991: $? = 0 >configure:7057: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp conftstm.o >&5 >configure:7060: $? = 0 >configure:7098: result: ok >configure:7145: checking for sysroot >configure:7175: result: no >configure:7182: checking for a working dd >configure:7220: result: /bin/dd >configure:7224: checking how to truncate binary pipes >configure:7239: result: /bin/dd bs=4096 count=1 >configure:7376: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:7379: $? = 0 >configure:7529: checking for x86_64-pc-linux-gnu-mt >configure:7559: result: no >configure:7569: checking for mt >configure:7585: found /usr/sbin/mt >configure:7596: result: mt >configure:7619: checking if mt is a manifest tool >configure:7625: mt '-?' >usage: mt [-v] [--version] [-h] [ -f device ] command [ count ] >configure:7633: result: no >configure:8310: checking how to run the C preprocessor >configure:8341: x86_64-pc-linux-gnu-gcc -E conftest.c >configure:8341: $? = 0 >configure:8355: x86_64-pc-linux-gnu-gcc -E conftest.c >conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory > #include <ac_nonexistent.h> > ^ >compilation terminated. >configure:8355: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "Goby" >| #define PACKAGE_TARNAME "goby" >| #define PACKAGE_VERSION "2.0.1" >| #define PACKAGE_STRING "Goby 2.0.1" >| #define PACKAGE_BUGREPORT "icb@med.cornell.edu" >| #define PACKAGE_URL "" >| #define PACKAGE "goby" >| #define VERSION "2.0.1" >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:8380: result: x86_64-pc-linux-gnu-gcc -E >configure:8400: x86_64-pc-linux-gnu-gcc -E conftest.c >configure:8400: $? = 0 >configure:8414: x86_64-pc-linux-gnu-gcc -E conftest.c >conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory > #include <ac_nonexistent.h> > ^ >compilation terminated. >configure:8414: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "Goby" >| #define PACKAGE_TARNAME "goby" >| #define PACKAGE_VERSION "2.0.1" >| #define PACKAGE_STRING "Goby 2.0.1" >| #define PACKAGE_BUGREPORT "icb@med.cornell.edu" >| #define PACKAGE_URL "" >| #define PACKAGE "goby" >| #define VERSION "2.0.1" >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:8443: checking for ANSI C header files >configure:8463: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8463: $? = 0 >configure:8536: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c >&5 >configure:8536: $? = 0 >configure:8536: ./conftest >configure:8536: $? = 0 >configure:8547: result: yes >configure:8560: checking for sys/types.h >configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8560: $? = 0 >configure:8560: result: yes >configure:8560: checking for sys/stat.h >configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8560: $? = 0 >configure:8560: result: yes >configure:8560: checking for stdlib.h >configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8560: $? = 0 >configure:8560: result: yes >configure:8560: checking for string.h >configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8560: $? = 0 >configure:8560: result: yes >configure:8560: checking for memory.h >configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8560: $? = 0 >configure:8560: result: yes >configure:8560: checking for strings.h >configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8560: $? = 0 >configure:8560: result: yes >configure:8560: checking for inttypes.h >configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8560: $? = 0 >configure:8560: result: yes >configure:8560: checking for stdint.h >configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8560: $? = 0 >configure:8560: result: yes >configure:8560: checking for unistd.h >configure:8560: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8560: $? = 0 >configure:8560: result: yes >configure:8574: checking for dlfcn.h >configure:8574: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:8574: $? = 0 >configure:8574: result: yes >configure:8840: checking for objdir >configure:8855: result: .libs >configure:9119: checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions >configure:9137: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe -fno-rtti -fno-exceptions conftest.c >&5 >cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C >configure:9141: $? = 0 >configure:9154: result: no >configure:9512: checking for x86_64-pc-linux-gnu-gcc option to produce PIC >configure:9519: result: -fPIC -DPIC >configure:9527: checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works >configure:9545: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe -fPIC -DPIC -DPIC conftest.c >&5 >configure:9549: $? = 0 >configure:9562: result: yes >configure:9591: checking if x86_64-pc-linux-gnu-gcc static flag -static works >configure:9619: result: yes >configure:9634: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o >configure:9655: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe -o out/conftest2.o conftest.c >&5 >configure:9659: $? = 0 >configure:9681: result: yes >configure:9689: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o >configure:9736: result: yes >configure:9769: checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries >configure:11028: result: yes >configure:11065: checking whether -lc should be explicitly linked in >configure:11073: x86_64-pc-linux-gnu-gcc -c -march=native -O2 -pipe conftest.c >&5 >configure:11076: $? = 0 >configure:11091: x86_64-pc-linux-gnu-gcc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 >configure:11094: $? = 0 >configure:11108: result: no >configure:11268: checking dynamic linker characteristics >configure:11862: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -Wl,-rpath -Wl,/foo conftest.c >&5 >configure:11862: $? = 0 >configure:12099: result: GNU/Linux ld.so >configure:12221: checking how to hardcode library paths into programs >configure:12246: result: immediate >configure:12794: checking whether stripping libraries is possible >configure:12799: result: yes >configure:12834: checking if libtool supports shared libraries >configure:12836: result: yes >configure:12839: checking whether to build shared libraries >configure:12864: result: yes >configure:12867: checking whether to build static libraries >configure:12871: result: no >configure:12894: checking how to run the C++ preprocessor >configure:12921: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:12921: $? = 0 >configure:12935: x86_64-pc-linux-gnu-g++ -E conftest.cpp >conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory > #include <ac_nonexistent.h> > ^ >compilation terminated. >configure:12935: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "Goby" >| #define PACKAGE_TARNAME "goby" >| #define PACKAGE_VERSION "2.0.1" >| #define PACKAGE_STRING "Goby 2.0.1" >| #define PACKAGE_BUGREPORT "icb@med.cornell.edu" >| #define PACKAGE_URL "" >| #define PACKAGE "goby" >| #define VERSION "2.0.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:12960: result: x86_64-pc-linux-gnu-g++ -E >configure:12980: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:12980: $? = 0 >configure:12994: x86_64-pc-linux-gnu-g++ -E conftest.cpp >conftest.cpp:23:28: fatal error: ac_nonexistent.h: No such file or directory > #include <ac_nonexistent.h> > ^ >compilation terminated. >configure:12994: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "Goby" >| #define PACKAGE_TARNAME "goby" >| #define PACKAGE_VERSION "2.0.1" >| #define PACKAGE_STRING "Goby 2.0.1" >| #define PACKAGE_BUGREPORT "icb@med.cornell.edu" >| #define PACKAGE_URL "" >| #define PACKAGE "goby" >| #define VERSION "2.0.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:13156: checking for ld used by x86_64-pc-linux-gnu-g++ >configure:13223: result: /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >configure:13230: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld >configure:13245: result: yes >configure:13300: checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries >configure:14373: result: yes >configure:14409: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:14412: $? = 0 >configure:14893: checking for x86_64-pc-linux-gnu-g++ option to produce PIC >configure:14900: result: -fPIC -DPIC >configure:14908: checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works >configure:14926: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -fPIC -DPIC -DPIC conftest.cpp >&5 >configure:14930: $? = 0 >configure:14943: result: yes >configure:14966: checking if x86_64-pc-linux-gnu-g++ static flag -static works >configure:14994: result: yes >configure:15006: checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o >configure:15027: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe -o out/conftest2.o conftest.cpp >&5 >configure:15031: $? = 0 >configure:15053: result: yes >configure:15058: checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o >configure:15105: result: yes >configure:15135: checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries >configure:15175: result: yes >configure:15316: checking dynamic linker characteristics >configure:16074: result: GNU/Linux ld.so >configure:16139: checking how to hardcode library paths into programs >configure:16164: result: immediate >configure:16227: checking for stdbool.h that conforms to C99 >configure:16294: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >conftest.cpp:26:15: error: expected unqualified-id before string constant > "error: bool is not defined" > ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ >conftest.cpp:44:48: error: 's' does not name a type > struct s { _Bool s: 1; _Bool t; } s; > ^ >conftest.cpp:54:28: error: 's' was not declared in this scope > char i[sizeof s.t]; > ^ >conftest.cpp: In function 'int main()': >conftest.cpp:72:24: error: 's' was not declared in this scope > bool e = &s; > ^ >conftest.cpp:76:63: error: 'i' was not declared in this scope > return (!a + !b + !c + !d + !e + !f + !g + !h + !i + !!j + !k + !!l > ^ >configure:16294: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "Goby" >| #define PACKAGE_TARNAME "goby" >| #define PACKAGE_VERSION "2.0.1" >| #define PACKAGE_STRING "Goby 2.0.1" >| #define PACKAGE_BUGREPORT "icb@med.cornell.edu" >| #define PACKAGE_URL "" >| #define PACKAGE "goby" >| #define VERSION "2.0.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| /* end confdefs.h. */ >| >| #include <stdbool.h> >| #ifndef bool >| "error: bool is not defined" >| #endif >| #ifndef false >| "error: false is not defined" >| #endif >| #if false >| "error: false is not 0" >| #endif >| #ifndef true >| "error: true is not defined" >| #endif >| #if true != 1 >| "error: true is not 1" >| #endif >| #ifndef __bool_true_false_are_defined >| "error: __bool_true_false_are_defined is not defined" >| #endif >| >| struct s { _Bool s: 1; _Bool t; } s; >| >| char a[true == 1 ? 1 : -1]; >| char b[false == 0 ? 1 : -1]; >| char c[__bool_true_false_are_defined == 1 ? 1 : -1]; >| char d[(bool) 0.5 == true ? 1 : -1]; >| /* See body of main program for 'e'. */ >| char f[(_Bool) 0.0 == false ? 1 : -1]; >| char g[true]; >| char h[sizeof (_Bool)]; >| char i[sizeof s.t]; >| enum { j = false, k = true, l = false * true, m = true * 256 }; >| /* The following fails for >| HP aC++/ANSI C B3910B A.05.55 [Dec 04 2003]. */ >| _Bool n[m]; >| char o[sizeof n == m * sizeof n[0] ? 1 : -1]; >| char p[-1 - (_Bool) 0 < 0 && -1 - (bool) 0 < 0 ? 1 : -1]; >| /* Catch a bug in an HP-UX C compiler. See >| http://gcc.gnu.org/ml/gcc-patches/2003-12/msg02303.html >| http://lists.gnu.org/archive/html/bug-coreutils/2005-11/msg00161.html >| */ >| _Bool q = true; >| _Bool *pq = &q; >| >| int >| main () >| { >| >| bool e = &s; >| *pq |= q; >| *pq |= ! q; >| /* Refer to every declared value, to avoid compiler optimizations. */ >| return (!a + !b + !c + !d + !e + !f + !g + !h + !i + !!j + !k + !!l >| + !m + !n + !o + !p + !q + !pq); >| >| ; >| return 0; >| } >configure:16301: result: no >configure:16303: checking for _Bool >configure:16303: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >conftest.cpp: In function 'int main()': >conftest.cpp:59:13: error: '_Bool' was not declared in this scope > if (sizeof (_Bool)) > ^~~~~ >configure:16303: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "Goby" >| #define PACKAGE_TARNAME "goby" >| #define PACKAGE_VERSION "2.0.1" >| #define PACKAGE_STRING "Goby 2.0.1" >| #define PACKAGE_BUGREPORT "icb@med.cornell.edu" >| #define PACKAGE_URL "" >| #define PACKAGE "goby" >| #define VERSION "2.0.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| /* end confdefs.h. */ >| #include <stdio.h> >| #ifdef HAVE_SYS_TYPES_H >| # include <sys/types.h> >| #endif >| #ifdef HAVE_SYS_STAT_H >| # include <sys/stat.h> >| #endif >| #ifdef STDC_HEADERS >| # include <stdlib.h> >| # include <stddef.h> >| #else >| # ifdef HAVE_STDLIB_H >| # include <stdlib.h> >| # endif >| #endif >| #ifdef HAVE_STRING_H >| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H >| # include <memory.h> >| # endif >| # include <string.h> >| #endif >| #ifdef HAVE_STRINGS_H >| # include <strings.h> >| #endif >| #ifdef HAVE_INTTYPES_H >| # include <inttypes.h> >| #endif >| #ifdef HAVE_STDINT_H >| # include <stdint.h> >| #endif >| #ifdef HAVE_UNISTD_H >| # include <unistd.h> >| #endif >| int >| main () >| { >| if (sizeof (_Bool)) >| return 0; >| ; >| return 0; >| } >configure:16303: result: no >configure:16321: checking for ANSI C header files >configure:16425: result: yes >configure:16433: checking for an ANSI C-conforming const >configure:16499: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16499: $? = 0 >configure:16506: result: yes >configure:16514: checking for inline >configure:16530: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16530: $? = 0 >configure:16538: result: inline >configure:16556: checking for off_t >configure:16556: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16556: $? = 0 >configure:16556: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >conftest.cpp: In function 'int main()': >conftest.cpp:60:19: error: expected primary-expression before ')' token > if (sizeof ((off_t))) > ^ >configure:16556: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "Goby" >| #define PACKAGE_TARNAME "goby" >| #define PACKAGE_VERSION "2.0.1" >| #define PACKAGE_STRING "Goby 2.0.1" >| #define PACKAGE_BUGREPORT "icb@med.cornell.edu" >| #define PACKAGE_URL "" >| #define PACKAGE "goby" >| #define VERSION "2.0.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define STDC_HEADERS 1 >| /* end confdefs.h. */ >| #include <stdio.h> >| #ifdef HAVE_SYS_TYPES_H >| # include <sys/types.h> >| #endif >| #ifdef HAVE_SYS_STAT_H >| # include <sys/stat.h> >| #endif >| #ifdef STDC_HEADERS >| # include <stdlib.h> >| # include <stddef.h> >| #else >| # ifdef HAVE_STDLIB_H >| # include <stdlib.h> >| # endif >| #endif >| #ifdef HAVE_STRING_H >| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H >| # include <memory.h> >| # endif >| # include <string.h> >| #endif >| #ifdef HAVE_STRINGS_H >| # include <strings.h> >| #endif >| #ifdef HAVE_INTTYPES_H >| # include <inttypes.h> >| #endif >| #ifdef HAVE_STDINT_H >| # include <stdint.h> >| #endif >| #ifdef HAVE_UNISTD_H >| # include <unistd.h> >| #endif >| int >| main () >| { >| if (sizeof ((off_t))) >| return 0; >| ; >| return 0; >| } >configure:16556: result: yes >configure:16567: checking for size_t >configure:16567: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16567: $? = 0 >configure:16567: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >conftest.cpp: In function 'int main()': >conftest.cpp:60:20: error: expected primary-expression before ')' token > if (sizeof ((size_t))) > ^ >configure:16567: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "Goby" >| #define PACKAGE_TARNAME "goby" >| #define PACKAGE_VERSION "2.0.1" >| #define PACKAGE_STRING "Goby 2.0.1" >| #define PACKAGE_BUGREPORT "icb@med.cornell.edu" >| #define PACKAGE_URL "" >| #define PACKAGE "goby" >| #define VERSION "2.0.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define STDC_HEADERS 1 >| /* end confdefs.h. */ >| #include <stdio.h> >| #ifdef HAVE_SYS_TYPES_H >| # include <sys/types.h> >| #endif >| #ifdef HAVE_SYS_STAT_H >| # include <sys/stat.h> >| #endif >| #ifdef STDC_HEADERS >| # include <stdlib.h> >| # include <stddef.h> >| #else >| # ifdef HAVE_STDLIB_H >| # include <stdlib.h> >| # endif >| #endif >| #ifdef HAVE_STRING_H >| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H >| # include <memory.h> >| # endif >| # include <string.h> >| #endif >| #ifdef HAVE_STRINGS_H >| # include <strings.h> >| #endif >| #ifdef HAVE_INTTYPES_H >| # include <inttypes.h> >| #endif >| #ifdef HAVE_STDINT_H >| # include <stdint.h> >| #endif >| #ifdef HAVE_UNISTD_H >| # include <unistd.h> >| #endif >| int >| main () >| { >| if (sizeof ((size_t))) >| return 0; >| ; >| return 0; >| } >configure:16567: result: yes >configure:16582: checking size of unsigned long >configure:16587: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16587: $? = 0 >configure:16587: ./conftest >configure:16587: $? = 0 >configure:16601: result: 8 >configure:16615: checking size of unsigned long long >configure:16620: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16620: $? = 0 >configure:16620: ./conftest >configure:16620: $? = 0 >configure:16634: result: 8 >configure:16647: checking fcntl.h usability >configure:16647: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16647: $? = 0 >configure:16647: result: yes >configure:16647: checking fcntl.h presence >configure:16647: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:16647: $? = 0 >configure:16647: result: yes >configure:16647: checking for fcntl.h >configure:16647: result: yes >configure:16659: checking malloc.h usability >configure:16659: x86_64-pc-linux-gnu-g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:16659: $? = 0 >configure:16659: result: yes >configure:16659: checking malloc.h presence >configure:16659: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:16659: $? = 0 >configure:16659: result: yes >configure:16659: checking for malloc.h >configure:16659: result: yes >configure:16673: checking for getcwd >configure:16673: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16673: $? = 0 >configure:16673: result: yes >configure:16684: checking for memset >configure:16684: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16684: $? = 0 >configure:16684: result: yes >configure:16695: checking for putenv >configure:16695: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16695: $? = 0 >configure:16695: result: yes >configure:16706: checking for realpath >configure:16706: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16706: $? = 0 >configure:16706: result: yes >configure:16717: checking for setenv >configure:16717: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16717: $? = 0 >configure:16717: result: yes >configure:16728: checking for strerror >configure:16728: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16728: $? = 0 >configure:16728: result: yes >configure:16740: checking for stdlib.h >configure:16740: result: yes >configure:16750: checking for GNU libc compatible malloc >configure:16774: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16774: $? = 0 >configure:16774: ./conftest >configure:16774: $? = 0 >configure:16784: result: yes >configure:16807: checking for stdlib.h >configure:16807: result: yes >configure:16817: checking for GNU libc compatible realloc >configure:16841: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16841: $? = 0 >configure:16841: ./conftest >configure:16841: $? = 0 >configure:16851: result: yes >configure:16872: checking whether lstat correctly handles trailing slash >configure:16898: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16898: $? = 0 >configure:16898: ./conftest >configure:16898: $? = 0 >configure:16915: result: yes >configure:16934: checking whether stat accepts an empty string >configure:16954: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:16954: $? = 0 >configure:16954: ./conftest >configure:16954: $? = 0 >configure:16964: result: no >configure:16981: checking whether lstat correctly handles trailing slash >configure:17024: result: yes >configure:17068: checking for x86_64-pc-linux-gnu-pkg-config >configure:17086: found /usr/bin/x86_64-pc-linux-gnu-pkg-config >configure:17098: result: /usr/bin/x86_64-pc-linux-gnu-pkg-config >configure:17166: checking pkg-config is at least version 0.9.0 >configure:17169: result: yes >configure:17179: checking for PROTOBUF >configure:17186: $PKG_CONFIG --exists --print-errors "protobuf >= 2.4.1" >configure:17189: $? = 0 >configure:17203: $PKG_CONFIG --exists --print-errors "protobuf >= 2.4.1" >configure:17206: $? = 0 >configure:17264: result: yes >configure:17272: checking for LIBPCRECPP >configure:17279: $PKG_CONFIG --exists --print-errors "libpcrecpp >= 8.10" >Package libpcrecpp was not found in the pkg-config search path. >Perhaps you should add the directory containing `libpcrecpp.pc' >to the PKG_CONFIG_PATH environment variable >No package 'libpcrecpp' found >configure:17282: $? = 1 >configure:17296: $PKG_CONFIG --exists --print-errors "libpcrecpp >= 8.10" >Package libpcrecpp was not found in the pkg-config search path. >Perhaps you should add the directory containing `libpcrecpp.pc' >to the PKG_CONFIG_PATH environment variable >No package 'libpcrecpp' found >configure:17299: $? = 1 >configure:17313: result: no >No package 'libpcrecpp' found >configure:17329: error: Package requirements (libpcrecpp >= 8.10) were not met: > >No package 'libpcrecpp' found > >Consider adjusting the PKG_CONFIG_PATH environment variable if you >installed software in a non-standard prefix. > >Alternatively, you may set the environment variables LIBPCRECPP_CFLAGS >and LIBPCRECPP_LIBS to avoid the need to call pkg-config. >See the pkg-config man page for more details. > >## ---------------- ## >## Cache variables. ## >## ---------------- ## > >ac_cv_build=x86_64-pc-linux-gnu >ac_cv_c_compiler_gnu=yes >ac_cv_c_const=yes >ac_cv_c_inline=inline >ac_cv_cxx_compiler_gnu=yes >ac_cv_env_CCC_set= >ac_cv_env_CCC_value= >ac_cv_env_CC_set= >ac_cv_env_CC_value= >ac_cv_env_CFLAGS_set=set >ac_cv_env_CFLAGS_value='-march=native -O2 -pipe' >ac_cv_env_CPPFLAGS_set= >ac_cv_env_CPPFLAGS_value= >ac_cv_env_CPP_set= >ac_cv_env_CPP_value= >ac_cv_env_CXXCPP_set= >ac_cv_env_CXXCPP_value= >ac_cv_env_CXXFLAGS_set=set >ac_cv_env_CXXFLAGS_value='-march=native -O2 -pipe' >ac_cv_env_CXX_set= >ac_cv_env_CXX_value= >ac_cv_env_LDFLAGS_set=set >ac_cv_env_LDFLAGS_value='-Wl,-O1 -Wl,--as-needed' >ac_cv_env_LIBPCRECPP_CFLAGS_set= >ac_cv_env_LIBPCRECPP_CFLAGS_value= >ac_cv_env_LIBPCRECPP_LIBS_set= >ac_cv_env_LIBPCRECPP_LIBS_value= >ac_cv_env_LIBS_set= >ac_cv_env_LIBS_value= >ac_cv_env_LT_SYS_LIBRARY_PATH_set= >ac_cv_env_LT_SYS_LIBRARY_PATH_value= >ac_cv_env_PKG_CONFIG_LIBDIR_set= >ac_cv_env_PKG_CONFIG_LIBDIR_value= >ac_cv_env_PKG_CONFIG_PATH_set=set >ac_cv_env_PKG_CONFIG_PATH_value=/usr/lib64/pkgconfig >ac_cv_env_PKG_CONFIG_set= >ac_cv_env_PKG_CONFIG_value= >ac_cv_env_PROTOBUF_CFLAGS_set= >ac_cv_env_PROTOBUF_CFLAGS_value= >ac_cv_env_PROTOBUF_LIBS_set= >ac_cv_env_PROTOBUF_LIBS_value= >ac_cv_env_build_alias_set=set >ac_cv_env_build_alias_value=x86_64-pc-linux-gnu >ac_cv_env_host_alias_set=set >ac_cv_env_host_alias_value=x86_64-pc-linux-gnu >ac_cv_env_target_alias_set= >ac_cv_env_target_alias_value= >ac_cv_func_getcwd=yes >ac_cv_func_lstat_dereferences_slashed_symlink=yes >ac_cv_func_malloc_0_nonnull=yes >ac_cv_func_memset=yes >ac_cv_func_putenv=yes >ac_cv_func_realloc_0_nonnull=yes >ac_cv_func_realpath=yes >ac_cv_func_setenv=yes >ac_cv_func_stat_empty_string_bug=no >ac_cv_func_strerror=yes >ac_cv_header_dlfcn_h=yes >ac_cv_header_fcntl_h=yes >ac_cv_header_inttypes_h=yes >ac_cv_header_malloc_h=yes >ac_cv_header_memory_h=yes >ac_cv_header_stdbool_h=no >ac_cv_header_stdc=yes >ac_cv_header_stdint_h=yes >ac_cv_header_stdlib_h=yes >ac_cv_header_string_h=yes >ac_cv_header_strings_h=yes >ac_cv_header_sys_stat_h=yes >ac_cv_header_sys_types_h=yes >ac_cv_header_unistd_h=yes >ac_cv_host=x86_64-pc-linux-gnu >ac_cv_objext=o >ac_cv_path_EGREP='/bin/grep -E' >ac_cv_path_FGREP='/bin/grep -F' >ac_cv_path_GREP=/bin/grep >ac_cv_path_PKG_CONFIG=/usr/bin/x86_64-pc-linux-gnu-pkg-config >ac_cv_path_SED=/bin/sed >ac_cv_path_install='/usr/lib/portage/python2.7/ebuild-helpers/xattr/install -c' >ac_cv_path_lt_DD=/bin/dd >ac_cv_path_mkdir=/bin/mkdir >ac_cv_prog_AR=x86_64-pc-linux-gnu-ar >ac_cv_prog_AWK=gawk >ac_cv_prog_CC=x86_64-pc-linux-gnu-gcc >ac_cv_prog_CPP='x86_64-pc-linux-gnu-gcc -E' >ac_cv_prog_CXX=x86_64-pc-linux-gnu-g++ >ac_cv_prog_CXXCPP='x86_64-pc-linux-gnu-g++ -E' >ac_cv_prog_OBJDUMP=x86_64-pc-linux-gnu-objdump >ac_cv_prog_RANLIB=x86_64-pc-linux-gnu-ranlib >ac_cv_prog_STRIP=x86_64-pc-linux-gnu-strip >ac_cv_prog_ac_ct_MANIFEST_TOOL=mt >ac_cv_prog_cc_c89= >ac_cv_prog_cc_g=yes >ac_cv_prog_cxx_g=yes >ac_cv_prog_make_make_set=yes >ac_cv_sizeof_unsigned_long=8 >ac_cv_sizeof_unsigned_long_long=8 >ac_cv_target=x86_64-pc-linux-gnu >ac_cv_type__Bool=no >ac_cv_type_off_t=yes >ac_cv_type_size_t=yes >am_cv_CC_dependencies_compiler_type=none >am_cv_CXX_dependencies_compiler_type=none >am_cv_make_support_nested_variables=yes >am_cv_prog_cc_c_o=yes >lt_cv_ar_at_file=@ >lt_cv_archive_cmds_need_lc=no >lt_cv_deplibs_check_method=pass_all >lt_cv_file_magic_cmd='$MAGIC_CMD' >lt_cv_file_magic_test_file= >lt_cv_ld_reload_flag=-r >lt_cv_nm_interface='BSD nm' >lt_cv_objdir=.libs >lt_cv_path_LD=/usr/x86_64-pc-linux-gnu/bin/ld >lt_cv_path_LDCXX='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64' >lt_cv_path_NM='/usr/bin/x86_64-pc-linux-gnu-nm -B' >lt_cv_path_mainfest_tool=no >lt_cv_prog_compiler_c_o=yes >lt_cv_prog_compiler_c_o_CXX=yes >lt_cv_prog_compiler_pic='-fPIC -DPIC' >lt_cv_prog_compiler_pic_CXX='-fPIC -DPIC' >lt_cv_prog_compiler_pic_works=yes >lt_cv_prog_compiler_pic_works_CXX=yes >lt_cv_prog_compiler_rtti_exceptions=no >lt_cv_prog_compiler_static_works=yes >lt_cv_prog_compiler_static_works_CXX=yes >lt_cv_prog_gnu_ld=yes >lt_cv_prog_gnu_ldcxx=yes >lt_cv_sharedlib_from_linklib_cmd='printf %s\n' >lt_cv_shlibpath_overrides_runpath=yes >lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' >lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"\1", (void *) \&\1},/p'\''' >lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \(.*\) .*$/ {"\1", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(lib.*\)$/ {"\1", (void *) \&\1},/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/ {"lib\1", (void *) \&\1},/p'\''' >lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW][ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' >lt_cv_sys_global_symbol_to_import= >lt_cv_sys_max_cmd_len=1572864 >lt_cv_to_host_file_cmd=func_convert_file_noop >lt_cv_to_tool_file_cmd=func_convert_file_noop >lt_cv_truncate_bin='/bin/dd bs=4096 count=1' >pkg_cv_PROTOBUF_CFLAGS='-pthread ' >pkg_cv_PROTOBUF_LIBS='-lprotobuf -pthread -lpthread ' > >## ----------------- ## >## Output variables. ## >## ----------------- ## > >ACLOCAL='${SHELL} /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/missing aclocal-1.15' >AMDEPBACKSLASH='' >AMDEP_FALSE='' >AMDEP_TRUE='#' >AMTAR='$${TAR-tar}' >AM_BACKSLASH='\' >AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' >AM_DEFAULT_VERBOSITY='1' >AM_V='$(V)' >AR='x86_64-pc-linux-gnu-ar' >AUTOCONF='${SHELL} /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/missing autoconf' >AUTOHEADER='${SHELL} /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/missing autoheader' >AUTOMAKE='${SHELL} /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/missing automake-1.15' >AWK='gawk' >CC='x86_64-pc-linux-gnu-gcc' >CCDEPMODE='depmode=none' >CFLAGS='-march=native -O2 -pipe' >CPP='x86_64-pc-linux-gnu-gcc -E' >CPPFLAGS='' >CXX='x86_64-pc-linux-gnu-g++' >CXXCPP='x86_64-pc-linux-gnu-g++ -E' >CXXDEPMODE='depmode=none' >CXXFLAGS='-march=native -O2 -pipe' >CYGPATH_W='echo' >DEFS='' >DEPDIR='.deps' >DLLTOOL='false' >DSYMUTIL='' >DUMPBIN='' >ECHO_C='' >ECHO_N='-n' >ECHO_T='' >EGREP='/bin/grep -E' >EXEEXT='' >FGREP='/bin/grep -F' >GREP='/bin/grep' >INSTALL_DATA='${INSTALL} -m 644' >INSTALL_PROGRAM='${INSTALL}' >INSTALL_SCRIPT='${INSTALL}' >INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' >LD='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64' >LDFLAGS='-Wl,-O1 -Wl,--as-needed' >LIBOBJS='' >LIBPCRECPP_CFLAGS='' >LIBPCRECPP_LIBS='' >LIBS='' >LIBTOOL='$(SHELL) $(top_builddir)/libtool' >LIPO='' >LN_S='ln -s' >LTLIBOBJS='' >LT_SYS_LIBRARY_PATH='' >MAKEINFO='${SHELL} /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/missing makeinfo' >MANIFEST_TOOL=':' >MKDIR_P='/bin/mkdir -p' >NM='/usr/bin/x86_64-pc-linux-gnu-nm -B' >NMEDIT='' >OBJDUMP='x86_64-pc-linux-gnu-objdump' >OBJEXT='o' >OTOOL64='' >OTOOL='' >PACKAGE='goby' >PACKAGE_BUGREPORT='icb@med.cornell.edu' >PACKAGE_NAME='Goby' >PACKAGE_STRING='Goby 2.0.1' >PACKAGE_TARNAME='goby' >PACKAGE_URL='' >PACKAGE_VERSION='2.0.1' >PATH_SEPARATOR=':' >PKG_CONFIG='/usr/bin/x86_64-pc-linux-gnu-pkg-config' >PKG_CONFIG_LIBDIR='' >PKG_CONFIG_PATH='/usr/lib64/pkgconfig' >PROTOBUF_CFLAGS='-pthread ' >PROTOBUF_LIBS='-lprotobuf -pthread -lpthread ' >RANLIB='x86_64-pc-linux-gnu-ranlib' >SED='/bin/sed' >SET_MAKE='' >SHELL='/bin/sh' >STRIP='x86_64-pc-linux-gnu-strip' >VERSION='2.0.1' >ac_ct_AR='' >ac_ct_CC='' >ac_ct_CXX='' >ac_ct_DUMPBIN='' >am__EXEEXT_FALSE='' >am__EXEEXT_TRUE='' >am__fastdepCC_FALSE='' >am__fastdepCC_TRUE='#' >am__fastdepCXX_FALSE='' >am__fastdepCXX_TRUE='#' >am__include='include' >am__isrc=' -I$(srcdir)' >am__leading_dot='.' >am__nodep='' >am__quote='' >am__tar='$${TAR-tar} chof - "$$tardir"' >am__untar='$${TAR-tar} xf -' >bindir='${exec_prefix}/bin' >build='x86_64-pc-linux-gnu' >build_alias='x86_64-pc-linux-gnu' >build_cpu='x86_64' >build_os='linux-gnu' >build_vendor='pc' >datadir='/usr/share' >datarootdir='${prefix}/share' >docdir='/usr/share/doc/goby-cpp-2.0.1' >dvidir='${docdir}' >exec_prefix='NONE' >host='x86_64-pc-linux-gnu' >host_alias='x86_64-pc-linux-gnu' >host_cpu='x86_64' >host_os='linux-gnu' >host_vendor='pc' >htmldir='${docdir}' >includedir='${prefix}/include' >infodir='/usr/share/info' >install_sh='${SHELL} /var/tmp/portage/sci-biology/goby-cpp-2.0.1/work/2.0.1/cpp/install-sh' >libdir='/usr/lib64' >libexecdir='${exec_prefix}/libexec' >localedir='${datarootdir}/locale' >localstatedir='/var/lib' >mandir='/usr/share/man' >mkdir_p='$(MKDIR_P)' >oldincludedir='/usr/include' >pdfdir='${docdir}' >prefix='/usr' >program_transform_name='s,x,x,' >psdir='${docdir}' >sbindir='${exec_prefix}/sbin' >sharedstatedir='${prefix}/com' >sysconfdir='/etc' >target='x86_64-pc-linux-gnu' >target_alias='' >target_cpu='x86_64' >target_os='linux-gnu' >target_vendor='pc' >version_info='1:0:0' > >## ----------- ## >## confdefs.h. ## >## ----------- ## > >/* confdefs.h */ >#define PACKAGE_NAME "Goby" >#define PACKAGE_TARNAME "goby" >#define PACKAGE_VERSION "2.0.1" >#define PACKAGE_STRING "Goby 2.0.1" >#define PACKAGE_BUGREPORT "icb@med.cornell.edu" >#define PACKAGE_URL "" >#define PACKAGE "goby" >#define VERSION "2.0.1" >#define STDC_HEADERS 1 >#define HAVE_SYS_TYPES_H 1 >#define HAVE_SYS_STAT_H 1 >#define HAVE_STDLIB_H 1 >#define HAVE_STRING_H 1 >#define HAVE_MEMORY_H 1 >#define HAVE_STRINGS_H 1 >#define HAVE_INTTYPES_H 1 >#define HAVE_STDINT_H 1 >#define HAVE_UNISTD_H 1 >#define HAVE_DLFCN_H 1 >#define LT_OBJDIR ".libs/" >#define STDC_HEADERS 1 >#define SIZEOF_UNSIGNED_LONG 8 >#define SIZEOF_UNSIGNED_LONG_LONG 8 >#define HAVE_FCNTL_H 1 >#define HAVE_MALLOC_H 1 >#define HAVE_GETCWD 1 >#define HAVE_MEMSET 1 >#define HAVE_PUTENV 1 >#define HAVE_REALPATH 1 >#define HAVE_SETENV 1 >#define HAVE_STRERROR 1 >#define HAVE_STDLIB_H 1 >#define HAVE_MALLOC 1 >#define HAVE_STDLIB_H 1 >#define HAVE_REALLOC 1 >#define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 >#define LSTAT_FOLLOWS_SLASHED_SYMLINK 1 > >configure: exit 1
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