[patch] buildsystem patch

bowtie-2.1.0-buildsystem.patch (text/plain), 734 bytes, created by cel.gentoo on 2013-09-24 18:17:56 UTC

--- Makefile.old	2013-09-22 12:07:12.606844000 +0200
+++ Makefile	2013-09-22 13:06:03.113888200 +0200
@@ -24,8 +24,6 @@
 INC =
 GCC_PREFIX = $(shell dirname `which gcc`)
 GCC_SUFFIX =
-CC = $(GCC_PREFIX)/gcc$(GCC_SUFFIX)
-CPP = $(GCC_PREFIX)/g++$(GCC_SUFFIX)
 CXX = $(CPP)
 HEADERS = $(wildcard *.h)
 BOWTIE_MM = 1
@@ -141,7 +139,7 @@
 
 DEBUG_FLAGS    = -O0 -g3 $(BITS_FLAG) $(SSE_FLAG)
 DEBUG_DEFS     = -DCOMPILER_OPTIONS="\"$(DEBUG_FLAGS) $(EXTRA_FLAGS)\""
-RELEASE_FLAGS  = -O3 $(BITS_FLAG) $(SSE_FLAG) -funroll-loops -g3
+RELEASE_FLAGS  = $(CXXFLAGS)
 RELEASE_DEFS   = -DCOMPILER_OPTIONS="\"$(RELEASE_FLAGS) $(EXTRA_FLAGS)\""
 NOASSERT_FLAGS = -DNDEBUG
 FILE_FLAGS     = -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE