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Gentoo's Bugzilla – Attachment 342510 Details for
Bug 462196
sci-physics/meep-1.1.1 - configure: ld: cannot find -latlas
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config.log
config.log (text/plain), 50.62 KB, created by
Sumant Oemrawsingh
on 2013-03-18 12:45:42 UTC
(
hide
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Description:
config.log
Filename:
MIME Type:
Creator:
Sumant Oemrawsingh
Created:
2013-03-18 12:45:42 UTC
Size:
50.62 KB
patch
obsolete
>This file contains any messages produced by compilers while >running configure, to aid debugging if configure makes a mistake. > >It was created by meep configure 1.1.1, which was >generated by GNU Autoconf 2.63. Invocation command line was > > $ ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --enable-shared --without-mpi --with-hdf5 --with-libctl > >## --------- ## >## Platform. ## >## --------- ## > >hostname = pkd >uname -m = x86_64 >uname -r = 3.6.11-gentoo >uname -s = Linux >uname -v = #2 SMP PREEMPT Fri Feb 22 16:20:07 CET 2013 > >/usr/bin/uname -p = Intel(R) Core(TM) i7-2640M CPU @ 2.80GHz >/bin/uname -X = unknown > >/bin/arch = unknown >/usr/bin/arch -k = unknown >/usr/convex/getsysinfo = unknown >/usr/bin/hostinfo = unknown >/bin/machine = unknown >/usr/bin/oslevel = unknown >/bin/universe = unknown > >PATH: /usr/lib64/portage/bin/ebuild-helpers >PATH: /usr/local/sbin >PATH: /usr/local/bin >PATH: /usr/sbin >PATH: /usr/bin >PATH: /sbin >PATH: /bin >PATH: /opt/bin >PATH: /usr/x86_64-pc-linux-gnu/gcc-bin/4.6.3 > > >## ----------- ## >## Core tests. ## >## ----------- ## > >configure:2151: checking for a BSD-compatible install >configure:2219: result: /usr/bin/install -c >configure:2230: checking whether build environment is sane >configure:2290: result: yes >configure:2431: checking for a thread-safe mkdir -p >configure:2470: result: /bin/mkdir -p >configure:2483: checking for gawk >configure:2499: found /usr/bin/gawk >configure:2510: result: gawk >configure:2521: checking whether make sets $(MAKE) >configure:2543: result: yes >configure:2653: checking whether to enable maintainer-specific portions of Makefiles >configure:2662: result: no >configure:2726: checking for x86_64-pc-linux-gnu-g++ >configure:2742: found /usr/bin/x86_64-pc-linux-gnu-g++ >configure:2753: result: x86_64-pc-linux-gnu-g++ >configure:2824: checking for C++ compiler version >configure:2832: x86_64-pc-linux-gnu-g++ --version >&5 >x86_64-pc-linux-gnu-g++ (Gentoo 4.6.3 p1.11, pie-0.5.2) 4.6.3 >Copyright (C) 2011 Free Software Foundation, Inc. >This is free software; see the source for copying conditions. There is NO >warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. > >configure:2836: $? = 0 >configure:2843: x86_64-pc-linux-gnu-g++ -v >&5 >Using built-in specs. >COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/4.6.3/x86_64-pc-linux-gnu-g++ >COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/4.6.3/lto-wrapper >Target: x86_64-pc-linux-gnu >Configured with: /var/tmp/portage/sys-devel/gcc-4.6.3/work/gcc-4.6.3/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.6.3 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.6.3 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.6.3/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.6.3/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --without-ppl --without-cloog --enable-lto --enable-nls --without-included-gettext --with-system-zlib --enable-obsolete --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.6.3/python --enable-checking=release --disable-libgcj --enable-libstdcxx-time --enable-languages=c,c++,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-targets=all --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.6.3 p1.11, pie-0.5.2' >Thread model: posix >gcc version 4.6.3 (Gentoo 4.6.3 p1.11, pie-0.5.2) >configure:2847: $? = 0 >configure:2854: x86_64-pc-linux-gnu-g++ -V >&5 >x86_64-pc-linux-gnu-g++: error: unrecognized option '-V' >x86_64-pc-linux-gnu-g++: fatal error: no input files >compilation terminated. >configure:2858: $? = 1 >configure:2881: checking for C++ compiler default output file name >configure:2903: x86_64-pc-linux-gnu-g++ -march=native -O3 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:2907: $? = 0 >configure:2945: result: a.out >configure:2964: checking whether the C++ compiler works >configure:2974: ./a.out >configure:2978: $? = 0 >configure:2997: result: yes >configure:3004: checking whether we are cross compiling >configure:3006: result: no >configure:3009: checking for suffix of executables >configure:3016: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O3 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp >&5 >configure:3020: $? = 0 >configure:3046: result: >configure:3052: checking for suffix of object files >configure:3078: x86_64-pc-linux-gnu-g++ -c -march=native -O3 -pipe conftest.cpp >&5 >configure:3082: $? = 0 >configure:3107: result: o >configure:3111: checking whether we are using the GNU C++ compiler >configure:3140: x86_64-pc-linux-gnu-g++ -c -march=native -O3 -pipe conftest.cpp >&5 >configure:3147: $? = 0 >configure:3164: result: yes >configure:3173: checking whether x86_64-pc-linux-gnu-g++ accepts -g >configure:3203: x86_64-pc-linux-gnu-g++ -c -g conftest.cpp >&5 >configure:3210: $? = 0 >configure:3311: result: yes >configure:3345: checking for style of include used by make >configure:3373: result: GNU >configure:3398: checking dependency style of x86_64-pc-linux-gnu-g++ >configure:3508: result: gcc3 >configure:4030: checking build system type >configure:4048: result: x86_64-pc-linux-gnu >configure:4070: checking host system type >configure:4085: result: x86_64-pc-linux-gnu >configure:4115: checking for x86_64-pc-linux-gnu-gcc >configure:4131: found /usr/bin/x86_64-pc-linux-gnu-gcc >configure:4142: result: x86_64-pc-linux-gnu-gcc >configure:4414: checking for C compiler version >configure:4422: x86_64-pc-linux-gnu-gcc --version >&5 >x86_64-pc-linux-gnu-gcc (Gentoo 4.6.3 p1.11, pie-0.5.2) 4.6.3 >Copyright (C) 2011 Free Software Foundation, Inc. >This is free software; see the source for copying conditions. There is NO >warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. > >configure:4426: $? = 0 >configure:4433: x86_64-pc-linux-gnu-gcc -v >&5 >Using built-in specs. >COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/4.6.3/x86_64-pc-linux-gnu-gcc >COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/4.6.3/lto-wrapper >Target: x86_64-pc-linux-gnu >Configured with: /var/tmp/portage/sys-devel/gcc-4.6.3/work/gcc-4.6.3/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.6.3 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.6.3 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.6.3/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.6.3/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --without-ppl --without-cloog --enable-lto --enable-nls --without-included-gettext --with-system-zlib --enable-obsolete --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.6.3/python --enable-checking=release --disable-libgcj --enable-libstdcxx-time --enable-languages=c,c++,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-targets=all --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.6.3 p1.11, pie-0.5.2' >Thread model: posix >gcc version 4.6.3 (Gentoo 4.6.3 p1.11, pie-0.5.2) >configure:4437: $? = 0 >configure:4444: x86_64-pc-linux-gnu-gcc -V >&5 >x86_64-pc-linux-gnu-gcc: error: unrecognized option '-V' >x86_64-pc-linux-gnu-gcc: fatal error: no input files >compilation terminated. >configure:4448: $? = 1 >configure:4451: checking whether we are using the GNU C compiler >configure:4480: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe conftest.c >&5 >configure:4487: $? = 0 >configure:4504: result: yes >configure:4513: checking whether x86_64-pc-linux-gnu-gcc accepts -g >configure:4543: x86_64-pc-linux-gnu-gcc -c -g conftest.c >&5 >configure:4550: $? = 0 >configure:4651: result: yes >configure:4668: checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89 >configure:4742: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe conftest.c >&5 >configure:4749: $? = 0 >configure:4772: result: none needed >configure:4792: checking dependency style of x86_64-pc-linux-gnu-gcc >configure:4902: result: gcc3 >configure:4929: checking for C++ compiler vendor >configure:4963: x86_64-pc-linux-gnu-g++ -c -march=native -O3 -pipe conftest.cpp >&5 >conftest.cpp: In function 'int main()': >conftest.cpp:16:7: error: 'thisisanerror' was not declared in this scope >configure:4970: $? = 1 >configure: failed program was: >| /* confdefs.h. */ >| #define PACKAGE_NAME "meep" >| #define PACKAGE_TARNAME "meep" >| #define PACKAGE_VERSION "1.1.1" >| #define PACKAGE_STRING "meep 1.1.1" >| #define PACKAGE_BUGREPORT "meep@ab-initio.mit.edu" >| #define PACKAGE "meep" >| #define VERSION "1.1.1" >| /* end confdefs.h. */ >| >| int >| main () >| { >| >| #if !(defined(__ICC) || defined(__ECC) || defined(__INTEL_COMPILER)) >| thisisanerror; >| #endif >| >| ; >| return 0; >| } >configure:4963: x86_64-pc-linux-gnu-g++ -c -march=native -O3 -pipe conftest.cpp >&5 >conftest.cpp: In function 'int main()': >conftest.cpp:16:7: error: 'thisisanerror' was not declared in this scope >configure:4970: $? = 1 >configure: failed program was: >| /* confdefs.h. */ >| #define PACKAGE_NAME "meep" >| #define PACKAGE_TARNAME "meep" >| #define PACKAGE_VERSION "1.1.1" >| #define PACKAGE_STRING "meep 1.1.1" >| #define PACKAGE_BUGREPORT "meep@ab-initio.mit.edu" >| #define PACKAGE "meep" >| #define VERSION "1.1.1" >| /* end confdefs.h. */ >| >| int >| main () >| { >| >| #if !(defined(__xlc__) || defined(__xlC__) || defined(__IBMC__) || defined(__IBMCPP__)) >| thisisanerror; >| #endif >| >| ; >| return 0; >| } >configure:4963: x86_64-pc-linux-gnu-g++ -c -march=native -O3 -pipe conftest.cpp >&5 >configure:4970: $? = 0 >configure:4987: result: gnu >configure:6326: checking for a sed that does not truncate output >configure:6392: result: /bin/sed >configure:6410: checking for grep that handles long lines and -e >configure:6470: result: /bin/grep >configure:6475: checking for egrep >configure:6539: result: /bin/grep -E >configure:6544: checking for fgrep >configure:6608: result: /bin/grep -F >configure:6643: checking for ld used by x86_64-pc-linux-gnu-gcc >configure:6710: result: /usr/x86_64-pc-linux-gnu/bin/ld >configure:6719: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld >configure:6734: result: yes >configure:6746: checking for BSD- or MS-compatible name lister (nm) >configure:6795: result: /usr/bin/nm -B >configure:6913: checking the name lister (/usr/bin/nm -B) interface >configure:6920: x86_64-pc-linux-gnu-g++ -c -march=native -O3 -pipe conftest.cpp >&5 >configure:6923: /usr/bin/nm -B "conftest.o" >configure:6926: output >0000000000000000 B some_variable >configure:6933: result: BSD nm >configure:6936: checking whether ln -s works >configure:6940: result: yes >configure:6948: checking the maximum length of command line arguments >configure:7068: result: 1572864 >configure:7085: checking whether the shell understands some XSI constructs >configure:7095: result: yes >configure:7099: checking whether the shell understands "+=" >configure:7105: result: yes >configure:7140: checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files >configure:7147: result: -r >configure:7176: checking for x86_64-pc-linux-gnu-objdump >configure:7192: found /usr/bin/x86_64-pc-linux-gnu-objdump >configure:7203: result: x86_64-pc-linux-gnu-objdump >configure:7275: checking how to recognize dependent libraries >configure:7471: result: pass_all >configure:7491: checking for x86_64-pc-linux-gnu-ar >configure:7507: found /usr/bin/x86_64-pc-linux-gnu-ar >configure:7518: result: x86_64-pc-linux-gnu-ar >configure:7596: checking for x86_64-pc-linux-gnu-strip >configure:7612: found /usr/bin/x86_64-pc-linux-gnu-strip >configure:7623: result: x86_64-pc-linux-gnu-strip >configure:7695: checking for x86_64-pc-linux-gnu-ranlib >configure:7711: found /usr/bin/x86_64-pc-linux-gnu-ranlib >configure:7722: result: x86_64-pc-linux-gnu-ranlib >configure:7852: checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object >configure:7970: x86_64-pc-linux-gnu-g++ -c -march=native -O3 -pipe conftest.cpp >&5 >configure:7973: $? = 0 >configure:7977: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm >configure:7980: $? = 0 >configure:8034: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O3 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp conftstm.o >&5 >configure:8037: $? = 0 >configure:8075: result: ok >configure:8170: x86_64-pc-linux-gnu-g++ -c -march=native -O3 -pipe conftest.cpp >&5 >configure:8173: $? = 0 >configure:8941: checking how to run the C preprocessor >configure:8981: x86_64-pc-linux-gnu-gcc -E conftest.c >configure:8988: $? = 0 >configure:9019: x86_64-pc-linux-gnu-gcc -E conftest.c >conftest.c:10:28: fatal error: ac_nonexistent.h: No such file or directory >compilation terminated. >configure:9026: $? = 1 >configure: failed program was: >| /* confdefs.h. */ >| #define PACKAGE_NAME "meep" >| #define PACKAGE_TARNAME "meep" >| #define PACKAGE_VERSION "1.1.1" >| #define PACKAGE_STRING "meep 1.1.1" >| #define PACKAGE_BUGREPORT "meep@ab-initio.mit.edu" >| #define PACKAGE "meep" >| #define VERSION "1.1.1" >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:9059: result: x86_64-pc-linux-gnu-gcc -E >configure:9088: x86_64-pc-linux-gnu-gcc -E conftest.c >configure:9095: $? = 0 >configure:9126: x86_64-pc-linux-gnu-gcc -E conftest.c >conftest.c:10:28: fatal error: ac_nonexistent.h: No such file or directory >compilation terminated. >configure:9133: $? = 1 >configure: failed program was: >| /* confdefs.h. */ >| #define PACKAGE_NAME "meep" >| #define PACKAGE_TARNAME "meep" >| #define PACKAGE_VERSION "1.1.1" >| #define PACKAGE_STRING "meep 1.1.1" >| #define PACKAGE_BUGREPORT "meep@ab-initio.mit.edu" >| #define PACKAGE "meep" >| #define VERSION "1.1.1" >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:9173: checking for ANSI C header files >configure:9203: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe conftest.c >&5 >configure:9210: $? = 0 >configure:9309: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O3 -pipe -Wl,-O1 -Wl,--as-needed conftest.c >&5 >configure:9313: $? = 0 >configure:9319: ./conftest >configure:9323: $? = 0 >configure:9341: result: yes >configure:9365: checking for sys/types.h >configure:9386: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe conftest.c >&5 >configure:9393: $? = 0 >configure:9410: result: yes >configure:9365: checking for sys/stat.h >configure:9386: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe conftest.c >&5 >configure:9393: $? = 0 >configure:9410: result: yes >configure:9365: checking for stdlib.h >configure:9386: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe conftest.c >&5 >configure:9393: $? = 0 >configure:9410: result: yes >configure:9365: checking for string.h >configure:9386: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe conftest.c >&5 >configure:9393: $? = 0 >configure:9410: result: yes >configure:9365: checking for memory.h >configure:9386: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe conftest.c >&5 >configure:9393: $? = 0 >configure:9410: result: yes >configure:9365: checking for strings.h >configure:9386: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe conftest.c >&5 >configure:9393: $? = 0 >configure:9410: result: yes >configure:9365: checking for inttypes.h >configure:9386: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe conftest.c >&5 >configure:9393: $? = 0 >configure:9410: result: yes >configure:9365: checking for stdint.h >configure:9386: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe conftest.c >&5 >configure:9393: $? = 0 >configure:9410: result: yes >configure:9365: checking for unistd.h >configure:9386: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe conftest.c >&5 >configure:9393: $? = 0 >configure:9410: result: yes >configure:9428: checking for dlfcn.h >configure:9449: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe conftest.c >&5 >configure:9456: $? = 0 >configure:9473: result: yes >configure:9600: checking for C++ compiler version >configure:9608: x86_64-pc-linux-gnu-g++ --version >&5 >x86_64-pc-linux-gnu-g++ (Gentoo 4.6.3 p1.11, pie-0.5.2) 4.6.3 >Copyright (C) 2011 Free Software Foundation, Inc. >This is free software; see the source for copying conditions. There is NO >warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. > >configure:9612: $? = 0 >configure:9619: x86_64-pc-linux-gnu-g++ -v >&5 >Using built-in specs. >COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/4.6.3/x86_64-pc-linux-gnu-g++ >COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/4.6.3/lto-wrapper >Target: x86_64-pc-linux-gnu >Configured with: /var/tmp/portage/sys-devel/gcc-4.6.3/work/gcc-4.6.3/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.6.3 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.6.3 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.6.3/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.6.3/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --without-ppl --without-cloog --enable-lto --enable-nls --without-included-gettext --with-system-zlib --enable-obsolete --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.6.3/python --enable-checking=release --disable-libgcj --enable-libstdcxx-time --enable-languages=c,c++,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --enable-targets=all --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.6.3 p1.11, pie-0.5.2' >Thread model: posix >gcc version 4.6.3 (Gentoo 4.6.3 p1.11, pie-0.5.2) >configure:9623: $? = 0 >configure:9630: x86_64-pc-linux-gnu-g++ -V >&5 >x86_64-pc-linux-gnu-g++: error: unrecognized option '-V' >x86_64-pc-linux-gnu-g++: fatal error: no input files >compilation terminated. >configure:9634: $? = 1 >configure:9637: checking whether we are using the GNU C++ compiler >configure:9690: result: yes >configure:9699: checking whether x86_64-pc-linux-gnu-g++ accepts -g >configure:9837: result: yes >configure:9862: checking dependency style of x86_64-pc-linux-gnu-g++ >configure:9972: result: gcc3 >configure:9995: checking how to run the C++ preprocessor >configure:10031: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:10038: $? = 0 >configure:10069: x86_64-pc-linux-gnu-g++ -E conftest.cpp >conftest.cpp:21:28: fatal error: ac_nonexistent.h: No such file or directory >compilation terminated. >configure:10076: $? = 1 >configure: failed program was: >| /* confdefs.h. */ >| #define PACKAGE_NAME "meep" >| #define PACKAGE_TARNAME "meep" >| #define PACKAGE_VERSION "1.1.1" >| #define PACKAGE_STRING "meep 1.1.1" >| #define PACKAGE_BUGREPORT "meep@ab-initio.mit.edu" >| #define PACKAGE "meep" >| #define VERSION "1.1.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:10109: result: x86_64-pc-linux-gnu-g++ -E >configure:10138: x86_64-pc-linux-gnu-g++ -E conftest.cpp >configure:10145: $? = 0 >configure:10176: x86_64-pc-linux-gnu-g++ -E conftest.cpp >conftest.cpp:21:28: fatal error: ac_nonexistent.h: No such file or directory >compilation terminated. >configure:10183: $? = 1 >configure: failed program was: >| /* confdefs.h. */ >| #define PACKAGE_NAME "meep" >| #define PACKAGE_TARNAME "meep" >| #define PACKAGE_VERSION "1.1.1" >| #define PACKAGE_STRING "meep 1.1.1" >| #define PACKAGE_BUGREPORT "meep@ab-initio.mit.edu" >| #define PACKAGE "meep" >| #define VERSION "1.1.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:10366: checking for objdir >configure:10381: result: .libs >configure:10677: checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions >configure:10695: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe -fno-rtti -fno-exceptions conftest.c >&5 >cc1: warning: command line option '-fno-rtti' is valid for C++/ObjC++ but not for C [enabled by default] >configure:10699: $? = 0 >configure:10712: result: no >configure:10732: checking for x86_64-pc-linux-gnu-gcc option to produce PIC >configure:11004: result: -fPIC -DPIC >configure:11016: checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works >configure:11034: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe -fPIC -DPIC -DPIC conftest.c >&5 >configure:11038: $? = 0 >configure:11051: result: yes >configure:11075: checking if x86_64-pc-linux-gnu-gcc static flag -static works >configure:11103: result: yes >configure:11118: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o >configure:11139: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe -o out/conftest2.o conftest.c >&5 >configure:11143: $? = 0 >configure:11165: result: yes >configure:11173: checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o >configure:11220: result: yes >configure:11253: checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries >configure:12327: result: yes >configure:12364: checking whether -lc should be explicitly linked in >configure:12369: x86_64-pc-linux-gnu-gcc -c -march=native -O3 -pipe conftest.c >&5 >configure:12372: $? = 0 >configure:12387: x86_64-pc-linux-gnu-gcc -shared conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 >configure:12390: $? = 0 >configure:12402: result: no >configure:12566: checking dynamic linker characteristics >configure:13009: x86_64-pc-linux-gnu-gcc -o conftest -march=native -O3 -pipe -Wl,-O1 -Wl,--as-needed -Wl,-rpath -Wl,/foo conftest.c >&5 >configure:13016: $? = 0 >configure:13249: result: GNU/Linux ld.so >configure:13351: checking how to hardcode library paths into programs >configure:13376: result: immediate >configure:14209: checking whether stripping libraries is possible >configure:14214: result: yes >configure:14249: checking if libtool supports shared libraries >configure:14251: result: yes >configure:14254: checking whether to build shared libraries >configure:14275: result: yes >configure:14278: checking whether to build static libraries >configure:14282: result: yes >configure:14432: checking for ld used by x86_64-pc-linux-gnu-g++ >configure:14499: result: /usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64 >configure:14508: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) is GNU ld >configure:14523: result: yes >configure:14578: checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries >configure:15553: result: yes >configure:15581: x86_64-pc-linux-gnu-g++ -c -march=native -O3 -pipe conftest.cpp >&5 >configure:15584: $? = 0 >configure:15766: checking for x86_64-pc-linux-gnu-g++ option to produce PIC >configure:16083: result: -fPIC -DPIC >configure:16092: checking if x86_64-pc-linux-gnu-g++ PIC flag -fPIC -DPIC works >configure:16110: x86_64-pc-linux-gnu-g++ -c -march=native -O3 -pipe -fPIC -DPIC -DPIC conftest.cpp >&5 >configure:16114: $? = 0 >configure:16127: result: yes >configure:16148: checking if x86_64-pc-linux-gnu-g++ static flag -static works >configure:16176: result: yes >configure:16188: checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o >configure:16209: x86_64-pc-linux-gnu-g++ -c -march=native -O3 -pipe -o out/conftest2.o conftest.cpp >&5 >configure:16213: $? = 0 >configure:16235: result: yes >configure:16240: checking if x86_64-pc-linux-gnu-g++ supports -c -o file.o >configure:16287: result: yes >configure:16317: checking whether the x86_64-pc-linux-gnu-g++ linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries >configure:16343: result: yes >configure:16480: checking dynamic linker characteristics >configure:16871: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O3 -pipe -Wl,-O1 -Wl,--as-needed -Wl,-rpath -Wl,/foo conftest.cpp >&5 >configure:16878: $? = 0 >configure:17111: result: GNU/Linux ld.so >configure:17162: checking how to hardcode library paths into programs >configure:17187: result: immediate >configure:17248: checking for latex2html >configure:17278: result: no >configure:17284: WARNING: Cannot find latex2html in your path! >configure:17292: checking for sin in -lm >configure:17327: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O3 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp -lm >&5 >configure:17334: $? = 0 >configure:17355: result: yes >configure:17368: checking for fftw_plan_dft_1d in -lfftw3 >configure:17403: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O3 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp -lfftw3 -lm >&5 >configure:17410: $? = 0 >configure:17431: result: yes >configure:17614: checking for pkg-config >configure:17632: found /usr/bin/pkg-config >configure:17645: result: /usr/bin/pkg-config >configure:17663: checking for harminv >= 1.1 >configure:17667: result: yes >configure:17671: checking HARMINV_CFLAGS >configure:17674: result: >configure:17677: checking HARMINV_LIBS >configure:17680: result: -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../.. -lharminv -llapack -lblas -lpthread -lcblas -latlas -lblas -latlas -lpthread -lm -lgfortran -lm >configure:23820: checking mpb.h usability >configure:23837: x86_64-pc-linux-gnu-g++ -c -march=native -O3 -pipe conftest.cpp >&5 >conftest.cpp:58:17: fatal error: mpb.h: No such file or directory >compilation terminated. >configure:23844: $? = 1 >configure: failed program was: >| /* confdefs.h. */ >| #define PACKAGE_NAME "meep" >| #define PACKAGE_TARNAME "meep" >| #define PACKAGE_VERSION "1.1.1" >| #define PACKAGE_STRING "meep 1.1.1" >| #define PACKAGE_BUGREPORT "meep@ab-initio.mit.edu" >| #define PACKAGE "meep" >| #define VERSION "1.1.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define HAVE_LIBFFTW3 1 >| #define HAVE_HARMINV 1 >| /* end confdefs.h. */ >| #include <stdio.h> >| #ifdef HAVE_SYS_TYPES_H >| # include <sys/types.h> >| #endif >| #ifdef HAVE_SYS_STAT_H >| # include <sys/stat.h> >| #endif >| #ifdef STDC_HEADERS >| # include <stdlib.h> >| # include <stddef.h> >| #else >| # ifdef HAVE_STDLIB_H >| # include <stdlib.h> >| # endif >| #endif >| #ifdef HAVE_STRING_H >| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H >| # include <memory.h> >| # endif >| # include <string.h> >| #endif >| #ifdef HAVE_STRINGS_H >| # include <strings.h> >| #endif >| #ifdef HAVE_INTTYPES_H >| # include <inttypes.h> >| #endif >| #ifdef HAVE_STDINT_H >| # include <stdint.h> >| #endif >| #ifdef HAVE_UNISTD_H >| # include <unistd.h> >| #endif >| #include <mpb.h> >configure:23858: result: no >configure:23862: checking mpb.h presence >configure:23877: x86_64-pc-linux-gnu-g++ -E conftest.cpp >conftest.cpp:25:17: fatal error: mpb.h: No such file or directory >compilation terminated. >configure:23884: $? = 1 >configure: failed program was: >| /* confdefs.h. */ >| #define PACKAGE_NAME "meep" >| #define PACKAGE_TARNAME "meep" >| #define PACKAGE_VERSION "1.1.1" >| #define PACKAGE_STRING "meep 1.1.1" >| #define PACKAGE_BUGREPORT "meep@ab-initio.mit.edu" >| #define PACKAGE "meep" >| #define VERSION "1.1.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define HAVE_LIBFFTW3 1 >| #define HAVE_HARMINV 1 >| /* end confdefs.h. */ >| #include <mpb.h> >configure:23898: result: no >configure:23931: checking for mpb.h >configure:23938: result: no >configure:26249: checking for cblas_cgemm >configure:26313: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O3 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../.. -lharminv -llapack -lblas -lpthread -lcblas -latlas -lblas -latlas -lpthread -lm -lgfortran -lm -lfftw3 -lm >&5 >/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -latlas >/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -latlas >collect2: ld returned 1 exit status >configure:26320: $? = 1 >configure: failed program was: >| /* confdefs.h. */ >| #define PACKAGE_NAME "meep" >| #define PACKAGE_TARNAME "meep" >| #define PACKAGE_VERSION "1.1.1" >| #define PACKAGE_STRING "meep 1.1.1" >| #define PACKAGE_BUGREPORT "meep@ab-initio.mit.edu" >| #define PACKAGE "meep" >| #define VERSION "1.1.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define HAVE_LIBFFTW3 1 >| #define HAVE_HARMINV 1 >| /* end confdefs.h. */ >| /* Define cblas_cgemm to an innocuous variant, in case <limits.h> declares cblas_cgemm. >| For example, HP-UX 11i <limits.h> declares gettimeofday. */ >| #define cblas_cgemm innocuous_cblas_cgemm >| >| /* System header to define __stub macros and hopefully few prototypes, >| which can conflict with char cblas_cgemm (); below. >| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since >| <limits.h> exists even on freestanding compilers. */ >| >| #ifdef __STDC__ >| # include <limits.h> >| #else >| # include <assert.h> >| #endif >| >| #undef cblas_cgemm >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char cblas_cgemm (); >| /* The GNU C library defines this for functions which it implements >| to always fail with ENOSYS. Some functions are actually named >| something starting with __ and the normal name is an alias. */ >| #if defined __stub_cblas_cgemm || defined __stub___cblas_cgemm >| choke me >| #endif >| >| #ifdef F77_DUMMY_MAIN >| >| # ifdef __cplusplus >| extern "C" >| # endif >| int F77_DUMMY_MAIN() { return 1; } >| >| #endif >| int >| main () >| { >| return cblas_cgemm (); >| ; >| return 0; >| } >configure:26340: result: no >configure:26346: checking for cblas_cgemm in -lgslcblas >configure:26389: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O3 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp -lgslcblas -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../.. -lharminv -llapack -lblas -lpthread -lcblas -latlas -lblas -latlas -lpthread -lm -lgfortran -lm -lfftw3 -lm >&5 >/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -latlas >/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -latlas >collect2: ld returned 1 exit status >configure:26396: $? = 1 >configure: failed program was: >| /* confdefs.h. */ >| #define PACKAGE_NAME "meep" >| #define PACKAGE_TARNAME "meep" >| #define PACKAGE_VERSION "1.1.1" >| #define PACKAGE_STRING "meep 1.1.1" >| #define PACKAGE_BUGREPORT "meep@ab-initio.mit.edu" >| #define PACKAGE "meep" >| #define VERSION "1.1.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define HAVE_LIBFFTW3 1 >| #define HAVE_HARMINV 1 >| /* end confdefs.h. */ >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char cblas_cgemm (); >| #ifdef F77_DUMMY_MAIN >| >| # ifdef __cplusplus >| extern "C" >| # endif >| int F77_DUMMY_MAIN() { return 1; } >| >| #endif >| int >| main () >| { >| return cblas_cgemm (); >| ; >| return 0; >| } >configure:26417: result: no >configure:26432: checking for gsl_sf_bessel_Jn in -lgsl >configure:26475: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O3 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp -lgsl -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../.. -lharminv -llapack -lblas -lpthread -lcblas -latlas -lblas -latlas -lpthread -lm -lgfortran -lm -lfftw3 -lm >&5 >/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -latlas >/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -latlas >collect2: ld returned 1 exit status >configure:26482: $? = 1 >configure: failed program was: >| /* confdefs.h. */ >| #define PACKAGE_NAME "meep" >| #define PACKAGE_TARNAME "meep" >| #define PACKAGE_VERSION "1.1.1" >| #define PACKAGE_STRING "meep 1.1.1" >| #define PACKAGE_BUGREPORT "meep@ab-initio.mit.edu" >| #define PACKAGE "meep" >| #define VERSION "1.1.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define HAVE_LIBFFTW3 1 >| #define HAVE_HARMINV 1 >| /* end confdefs.h. */ >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char gsl_sf_bessel_Jn (); >| #ifdef F77_DUMMY_MAIN >| >| # ifdef __cplusplus >| extern "C" >| # endif >| int F77_DUMMY_MAIN() { return 1; } >| >| #endif >| int >| main () >| { >| return gsl_sf_bessel_Jn (); >| ; >| return 0; >| } >configure:26503: result: no >configure:26513: WARNING: Missing GNU GSL library...Bessel-function field initialization will not be supported. >configure:26530: checking for deflate in -lz >configure:26573: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O3 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp -lz -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../.. -lharminv -llapack -lblas -lpthread -lcblas -latlas -lblas -latlas -lpthread -lm -lgfortran -lm -lfftw3 -lm >&5 >/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -latlas >/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -latlas >collect2: ld returned 1 exit status >configure:26580: $? = 1 >configure: failed program was: >| /* confdefs.h. */ >| #define PACKAGE_NAME "meep" >| #define PACKAGE_TARNAME "meep" >| #define PACKAGE_VERSION "1.1.1" >| #define PACKAGE_STRING "meep 1.1.1" >| #define PACKAGE_BUGREPORT "meep@ab-initio.mit.edu" >| #define PACKAGE "meep" >| #define VERSION "1.1.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define HAVE_LIBFFTW3 1 >| #define HAVE_HARMINV 1 >| /* end confdefs.h. */ >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char deflate (); >| #ifdef F77_DUMMY_MAIN >| >| # ifdef __cplusplus >| extern "C" >| # endif >| int F77_DUMMY_MAIN() { return 1; } >| >| #endif >| int >| main () >| { >| return deflate (); >| ; >| return 0; >| } >configure:26601: result: no >configure:26611: WARNING: zlib is required for HDF5! >configure:26621: checking for H5Pcreate in -lhdf5 >configure:26664: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O3 -pipe -Wl,-O1 -Wl,--as-needed conftest.cpp -lhdf5 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../.. -lharminv -llapack -lblas -lpthread -lcblas -latlas -lblas -latlas -lpthread -lm -lgfortran -lm -lfftw3 -lm >&5 >/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -latlas >/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -latlas >collect2: ld returned 1 exit status >configure:26671: $? = 1 >configure: failed program was: >| /* confdefs.h. */ >| #define PACKAGE_NAME "meep" >| #define PACKAGE_TARNAME "meep" >| #define PACKAGE_VERSION "1.1.1" >| #define PACKAGE_STRING "meep 1.1.1" >| #define PACKAGE_BUGREPORT "meep@ab-initio.mit.edu" >| #define PACKAGE "meep" >| #define VERSION "1.1.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define HAVE_LIBFFTW3 1 >| #define HAVE_HARMINV 1 >| /* end confdefs.h. */ >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char H5Pcreate (); >| #ifdef F77_DUMMY_MAIN >| >| # ifdef __cplusplus >| extern "C" >| # endif >| int F77_DUMMY_MAIN() { return 1; } >| >| #endif >| int >| main () >| { >| return H5Pcreate (); >| ; >| return 0; >| } >configure:26692: result: no >configure:26855: WARNING: Couldn't find the HDF5 library!! Switching to --without-hdf5. >configure:27046: checking for guile-config >configure:27062: found /usr/bin/guile-config >configure:27074: result: guile-config >configure:27506: checking if linking to guile works >configure:27544: x86_64-pc-linux-gnu-g++ -o conftest -march=native -O3 -pipe -pthread -Wl,-O1 -Wl,--as-needed conftest.cpp -pthread -L/usr/lib64 -lguile -lltdl -lgmp -lcrypt -lm -lltdl -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../.. -lharminv -llapack -lblas -lpthread -lcblas -latlas -lblas -latlas -lpthread -lm -lgfortran -lm -lfftw3 -lm >&5 >/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -latlas >/usr/lib/gcc/x86_64-pc-linux-gnu/4.6.3/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -latlas >collect2: ld returned 1 exit status >configure:27551: $? = 1 >configure: failed program was: >| /* confdefs.h. */ >| #define PACKAGE_NAME "meep" >| #define PACKAGE_TARNAME "meep" >| #define PACKAGE_VERSION "1.1.1" >| #define PACKAGE_STRING "meep 1.1.1" >| #define PACKAGE_BUGREPORT "meep@ab-initio.mit.edu" >| #define PACKAGE "meep" >| #define VERSION "1.1.1" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define HAVE_LIBFFTW3 1 >| #define HAVE_HARMINV 1 >| /* end confdefs.h. */ >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char gh_enter (); >| #ifdef F77_DUMMY_MAIN >| >| # ifdef __cplusplus >| extern "C" >| # endif >| int F77_DUMMY_MAIN() { return 1; } >| >| #endif >| int >| main () >| { >| return gh_enter (); >| ; >| return 0; >| } >configure:27566: result: no >configure:27568: error: guile-config is broken > >## ---------------- ## >## Cache variables. ## >## ---------------- ## > >ac_cv_build=x86_64-pc-linux-gnu >ac_cv_c_compiler_gnu=yes >ac_cv_cxx_compiler_gnu=yes >ac_cv_env_CCC_set= >ac_cv_env_CCC_value= >ac_cv_env_CC_set= >ac_cv_env_CC_value= >ac_cv_env_CFLAGS_set=set >ac_cv_env_CFLAGS_value='-march=native -O3 -pipe' >ac_cv_env_CPPFLAGS_set= >ac_cv_env_CPPFLAGS_value= >ac_cv_env_CPP_set= >ac_cv_env_CPP_value= >ac_cv_env_CXXCPP_set= >ac_cv_env_CXXCPP_value= >ac_cv_env_CXXFLAGS_set=set >ac_cv_env_CXXFLAGS_value='-march=native -O3 -pipe' >ac_cv_env_CXX_set= >ac_cv_env_CXX_value= >ac_cv_env_F77_set= >ac_cv_env_F77_value= >ac_cv_env_FFLAGS_set=set >ac_cv_env_FFLAGS_value='-O2 -pipe' >ac_cv_env_LDFLAGS_set=set >ac_cv_env_LDFLAGS_value='-Wl,-O1 -Wl,--as-needed' >ac_cv_env_LIBS_set= >ac_cv_env_LIBS_value= >ac_cv_env_MPICXX_set= >ac_cv_env_MPICXX_value= >ac_cv_env_build_alias_set=set >ac_cv_env_build_alias_value=x86_64-pc-linux-gnu >ac_cv_env_host_alias_set=set >ac_cv_env_host_alias_value=x86_64-pc-linux-gnu >ac_cv_env_target_alias_set= >ac_cv_env_target_alias_value= >ac_cv_func_cblas_cgemm=no >ac_cv_header_dlfcn_h=yes >ac_cv_header_inttypes_h=yes >ac_cv_header_memory_h=yes >ac_cv_header_mpb_h=no >ac_cv_header_stdc=yes >ac_cv_header_stdint_h=yes >ac_cv_header_stdlib_h=yes >ac_cv_header_string_h=yes >ac_cv_header_strings_h=yes >ac_cv_header_sys_stat_h=yes >ac_cv_header_sys_types_h=yes >ac_cv_header_unistd_h=yes >ac_cv_host=x86_64-pc-linux-gnu >ac_cv_lib_fftw3_fftw_plan_dft_1d=yes >ac_cv_lib_gsl_gsl_sf_bessel_Jn=no >ac_cv_lib_gslcblas_cblas_cgemm=no >ac_cv_lib_hdf5_H5Pcreate=no >ac_cv_lib_m_sin=yes >ac_cv_lib_z_deflate=no >ac_cv_objext=o >ac_cv_path_EGREP='/bin/grep -E' >ac_cv_path_FGREP='/bin/grep -F' >ac_cv_path_GREP=/bin/grep >ac_cv_path_PKG_CONFIG=/usr/bin/pkg-config >ac_cv_path_SED=/bin/sed >ac_cv_path_install='/usr/bin/install -c' >ac_cv_path_mkdir=/bin/mkdir >ac_cv_prog_AR=x86_64-pc-linux-gnu-ar >ac_cv_prog_AWK=gawk >ac_cv_prog_CC=x86_64-pc-linux-gnu-gcc >ac_cv_prog_CPP='x86_64-pc-linux-gnu-gcc -E' >ac_cv_prog_CXX=x86_64-pc-linux-gnu-g++ >ac_cv_prog_CXXCPP='x86_64-pc-linux-gnu-g++ -E' >ac_cv_prog_GUILE_CONFIG=guile-config >ac_cv_prog_OBJDUMP=x86_64-pc-linux-gnu-objdump >ac_cv_prog_RANLIB=x86_64-pc-linux-gnu-ranlib >ac_cv_prog_STRIP=x86_64-pc-linux-gnu-strip >ac_cv_prog_cc_c89= >ac_cv_prog_cc_g=yes >ac_cv_prog_cxx_g=yes >ac_cv_prog_make_make_set=yes >am_cv_CC_dependencies_compiler_type=gcc3 >am_cv_CXX_dependencies_compiler_type=gcc3 >ax_cv_cxx_compiler_vendor=gnu >lt_cv_deplibs_check_method=pass_all >lt_cv_file_magic_cmd='$MAGIC_CMD' >lt_cv_file_magic_test_file= >lt_cv_ld_reload_flag=-r >lt_cv_nm_interface='BSD nm' >lt_cv_objdir=.libs >lt_cv_path_LD=/usr/x86_64-pc-linux-gnu/bin/ld >lt_cv_path_LDCXX='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64' >lt_cv_path_NM='/usr/bin/nm -B' >lt_cv_prog_compiler_c_o=yes >lt_cv_prog_compiler_c_o_CXX=yes >lt_cv_prog_compiler_pic_works=yes >lt_cv_prog_compiler_pic_works_CXX=yes >lt_cv_prog_compiler_rtti_exceptions=no >lt_cv_prog_compiler_static_works=yes >lt_cv_prog_compiler_static_works_CXX=yes >lt_cv_prog_gnu_ld=yes >lt_cv_prog_gnu_ldcxx=yes >lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\''' >lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' >lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\) $/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' >lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' >lt_cv_sys_max_cmd_len=1572864 > >## ----------------- ## >## Output variables. ## >## ----------------- ## > >ACLOCAL='${SHELL} /var/tmp/portage/sci-physics/meep-1.1.1/work/meep-1.1.1/missing --run aclocal-1.11' >ACTIVATE_READLINE='' >AMDEPBACKSLASH='\' >AMDEP_FALSE='#' >AMDEP_TRUE='' >AMTAR='${SHELL} /var/tmp/portage/sci-physics/meep-1.1.1/work/meep-1.1.1/missing --run tar' >AM_BACKSLASH='\' >AM_DEFAULT_VERBOSITY='0' >AR='x86_64-pc-linux-gnu-ar' >ARCHFLAG=' -march=native' >AUTOCONF='${SHELL} /var/tmp/portage/sci-physics/meep-1.1.1/work/meep-1.1.1/missing --run autoconf' >AUTOHEADER='${SHELL} /var/tmp/portage/sci-physics/meep-1.1.1/work/meep-1.1.1/missing --run autoheader' >AUTOMAKE='${SHELL} /var/tmp/portage/sci-physics/meep-1.1.1/work/meep-1.1.1/missing --run automake-1.11' >AWK='gawk' >BLAS_LIBS='' >CC='x86_64-pc-linux-gnu-gcc' >CCDEPMODE='depmode=gcc3' >CFLAGS='-march=native -O3 -pipe ' >CPP='x86_64-pc-linux-gnu-gcc -E' >CPPFLAGS=' -pthread' >CTL_H_CPPFLAG='' >CXX='x86_64-pc-linux-gnu-g++' >CXXCPP='x86_64-pc-linux-gnu-g++ -E' >CXXDEPMODE='depmode=gcc3' >CXXFLAGS='-march=native -O3 -pipe' >CYGPATH_W='echo' >DEFS='' >DEPDIR='.deps' >DSYMUTIL='' >DUMPBIN='' >ECHO_C='' >ECHO_N='-n' >ECHO_T='' >EGREP='/bin/grep -E' >EXEEXT='' >F77='' >FFLAGS='-O2 -pipe' >FGREP='/bin/grep -F' >FLIBS='' >GEN_CTL_IO='' >GREP='/bin/grep' >GUILE_CONFIG='guile-config' >HARMINV_CFLAGS='' >HARMINV_LIBS='-L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../.. -lharminv -llapack -lblas -lpthread -lcblas -latlas -lblas -latlas -lpthread -lm -lgfortran -lm ' >INSTALL_DATA='${INSTALL} -m 644' >INSTALL_PROGRAM='${INSTALL}' >INSTALL_SCRIPT='${INSTALL}' >INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' >LAPACK_LIBS='' >LATEX2HTML='echo not running latex2html...' >LD='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64' >LDFLAGS='-Wl,-O1 -Wl,--as-needed' >LIBCTL_DIR='' >LIBCTL_LIBS='' >LIBOBJS='' >LIBS='-pthread -L/usr/lib64 -lguile -lltdl -lgmp -lcrypt -lm -lltdl -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../.. -lharminv -llapack -lblas -lpthread -lcblas -latlas -lblas -latlas -lpthread -lm -lgfortran -lm -lfftw3 -lm ' >LIBTOOL='$(SHELL) $(top_builddir)/libtool' >LIPO='' >LN_S='ln -s' >LTLIBOBJS='' >MAINT='#' >MAINTAINER_MODE_FALSE='' >MAINTAINER_MODE_TRUE='#' >MAKEINFO='${SHELL} /var/tmp/portage/sci-physics/meep-1.1.1/work/meep-1.1.1/missing --run makeinfo' >MEEPLIBS='-Wl,-O1 -Wl,--as-needed -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.4/../../.. -lharminv -llapack -lblas -lpthread -lcblas -latlas -lblas -latlas -lpthread -lm -lgfortran -lm -lfftw3 -lm ' >MEEP_SUFFIX='' >MKDIR_P='/bin/mkdir -p' >MPICXX='' >MPILIBS='' >NM='/usr/bin/nm -B' >NMEDIT='' >OBJDUMP='x86_64-pc-linux-gnu-objdump' >OBJEXT='o' >OTOOL64='' >OTOOL='' >PACKAGE='meep' >PACKAGE_BUGREPORT='meep@ab-initio.mit.edu' >PACKAGE_NAME='meep' >PACKAGE_STRING='meep 1.1.1' >PACKAGE_TARNAME='meep' >PACKAGE_VERSION='1.1.1' >PATH_SEPARATOR=':' >PKG_CONFIG='/usr/bin/pkg-config' >PRTDIAG='' >RANLIB='x86_64-pc-linux-gnu-ranlib' >RUNCODE='' >SED='/bin/sed' >SET_MAKE='' >SHARED_VERSION_INFO='6:1:0' >SHELL='/bin/sh' >STRIP='x86_64-pc-linux-gnu-strip' >VERSION='1.1.1' >WITH_LIBCTL_FALSE='#' >WITH_LIBCTL_TRUE='' >ac_ct_CC='' >ac_ct_CXX='' >ac_ct_DUMPBIN='' >ac_ct_F77='' >am__EXEEXT_FALSE='' >am__EXEEXT_TRUE='' >am__fastdepCC_FALSE='#' >am__fastdepCC_TRUE='' >am__fastdepCXX_FALSE='#' >am__fastdepCXX_TRUE='' >am__include='include' >am__isrc='' >am__leading_dot='.' >am__quote='' >am__tar='${AMTAR} chof - "$$tardir"' >am__untar='${AMTAR} xf -' >bindir='${exec_prefix}/bin' >build='x86_64-pc-linux-gnu' >build_alias='x86_64-pc-linux-gnu' >build_cpu='x86_64' >build_os='linux-gnu' >build_vendor='pc' >datadir='/usr/share' >datarootdir='${prefix}/share' >docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' >dvidir='${docdir}' >exec_prefix='NONE' >host='x86_64-pc-linux-gnu' >host_alias='x86_64-pc-linux-gnu' >host_cpu='x86_64' >host_os='linux-gnu' >host_vendor='pc' >htmldir='${docdir}' >includedir='${prefix}/include' >infodir='/usr/share/info' >install_sh='${SHELL} /var/tmp/portage/sci-physics/meep-1.1.1/work/meep-1.1.1/install-sh' >libdir='/usr/lib64' >libexecdir='${exec_prefix}/libexec' >localedir='${datarootdir}/locale' >localstatedir='/var/lib' >lt_ECHO='echo' >mandir='/usr/share/man' >mkdir_p='/bin/mkdir -p' >oldincludedir='/usr/include' >pdfdir='${docdir}' >prefix='/usr' >program_transform_name='s,x,x,' >psdir='${docdir}' >sbindir='${exec_prefix}/sbin' >sharedstatedir='${prefix}/com' >sysconfdir='/etc' >target_alias='' > >## ----------- ## >## confdefs.h. ## >## ----------- ## > >#define PACKAGE_NAME "meep" >#define PACKAGE_TARNAME "meep" >#define PACKAGE_VERSION "1.1.1" >#define PACKAGE_STRING "meep 1.1.1" >#define PACKAGE_BUGREPORT "meep@ab-initio.mit.edu" >#define PACKAGE "meep" >#define VERSION "1.1.1" >#define STDC_HEADERS 1 >#define HAVE_SYS_TYPES_H 1 >#define HAVE_SYS_STAT_H 1 >#define HAVE_STDLIB_H 1 >#define HAVE_STRING_H 1 >#define HAVE_MEMORY_H 1 >#define HAVE_STRINGS_H 1 >#define HAVE_INTTYPES_H 1 >#define HAVE_STDINT_H 1 >#define HAVE_UNISTD_H 1 >#define HAVE_DLFCN_H 1 >#define LT_OBJDIR ".libs/" >#define HAVE_LIBM 1 >#define HAVE_LIBFFTW3 1 >#define HAVE_HARMINV 1 > >configure: exit 1
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