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Gentoo's Bugzilla – Attachment 335574 Details for
Bug 452000
sci-libs/ccp4-libs-6.1.3-r11 - ?
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build.log
ccp4-libs-6.1.3-r11-build.log (text/plain), 8.48 KB, created by
urcindalo
on 2013-01-14 09:29:39 UTC
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Description:
build.log
Filename:
MIME Type:
Creator:
urcindalo
Created:
2013-01-14 09:29:39 UTC
Size:
8.48 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sci-libs/ccp4-libs-6.1.3-r11 >[32;01m * [39;49;00mRepository: gentoo >[32;01m * [39;49;00mMaintainer: jlec@gentoo.org sci-chemistry@gentoo.org >[32;01m * [39;49;00mUSE: amd64 consolekit elibc_glibc kernel_linux multilib policykit userland_GNU >[32;01m * [39;49;00mFEATURES: sandbox > [32;01m*[0m Using following Fortran compiler: > [32;01m*[0m F77: x86_64-pc-linux-gnu-gfortran > [32;01m*[0m FC: x86_64-pc-linux-gnu-gfortran >>>> Unpacking source... >>>> Unpacking ccp4-6.1.3-core-src.tar.gz to /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r11/work >>>> Source unpacked in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r11/work >>>> Preparing source in /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r11/work/ccp4-6.1.3 ... > [32;01m*[0m Applying upstream patches ... > [32;01m*[0m Done. > > [32;01m*[0m Applying Gentoo patches ... > [32;01m*[0m 6.1.3-overflows.patch ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m 6.1.3-dont-make-dirs-in-configure.patch ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m 6.0.2-ppc-double-define-gerror.patch ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m 6.1.3-ccif-shared.patch ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m 6.1.3-dont-build-mmdb.patch ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m 6.1.3-unbundle-libs-ng2.patch ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m 6.1.3-noinstall.patch ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m 6.1.3-impl-dec.patch ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m 6.1.3-lapack.patch ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m 6.1.3-cbf.patch ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Done. > > [32;01m*[0m Using GNU config files from /usr/share/gnuconfig > [32;01m*[0m Updating lib/ssm/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating lib/ccif/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating lib/fftw/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating lib/rxdispencer/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating lib/DiffractionImage/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating lib/clipper/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating src/pisa/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating src/pointless/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating src/clipper_progs/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating src/rapper/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating x-windows/Mosflm/cbf/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating x-windows/Mosflm/jpg/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating x-windows/Mosflm/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating x-windows/Rotgen/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating x-windows/xdl_view/src/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating x-windows/libjwc/libjwc_c/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating x-windows/libjwc/libjwc_f/config.sub >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating lib/ssm/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating lib/ccif/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating lib/fftw/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating lib/rxdispencer/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating lib/DiffractionImage/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating lib/clipper/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating src/pisa/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating src/pointless/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating src/clipper_progs/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating src/rapper/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating x-windows/Mosflm/cbf/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating x-windows/Mosflm/jpg/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating x-windows/Mosflm/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating x-windows/Rotgen/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating x-windows/xdl_view/src/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating x-windows/libjwc/libjwc_c/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Updating x-windows/libjwc/libjwc_f/config.guess >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r11/work/ccp4-6.1.3/lib/DiffractionImage' ... > [32;01m*[0m Running libtoolize --install --copy --force --automake ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running aclocal ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoconf ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running automake --add-missing --copy ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running elibtoolize in: ccp4-6.1.3/lib/DiffractionImage/ > [32;01m*[0m Applying portage/1.2.0 patch ... > [32;01m*[0m Applying sed/1.5.6 patch ... > [32;01m*[0m Applying as-needed/2.2.6 patch ... > [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r11/work/ccp4-6.1.3/src/rapper' ... > [32;01m*[0m Running libtoolize --install --copy --force --automake ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running aclocal ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoconf ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running automake --add-missing --copy ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running elibtoolize in: ccp4-6.1.3/src/rapper/ > [32;01m*[0m Applying portage/1.2.0 patch ... > [32;01m*[0m Applying sed/1.5.6 patch ... > [32;01m*[0m Applying as-needed/2.2.6 patch ... > [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r11/work/ccp4-6.1.3/src/pisa' ... > [32;01m*[0m Running aclocal -I macros ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoconf ... >[A[145C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running automake --add-missing --copy --foreign ... >[A[145C [34;01m[ [31;01m!![34;01m ][0m > > [31;01m*[0m Failed Running automake ! > [31;01m*[0m > [31;01m*[0m Include in your bugreport the contents of: > [31;01m*[0m > [31;01m*[0m /var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r11/temp/automake-2.out > > [31;01m*[0m ERROR: sci-libs/ccp4-libs-6.1.3-r11 failed (prepare phase): > [31;01m*[0m Failed Running automake ! > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 93: Called src_prepare > [31;01m*[0m environment, line 5790: Called eautoreconf > [31;01m*[0m environment, line 1588: Called eautomake > [31;01m*[0m environment, line 1537: Called autotools_run_tool 'automake' '--add-missing' '--copy' '--foreign' > [31;01m*[0m environment, line 1346: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m die "Failed Running $1 !"; > [31;01m*[0m > [31;01m*[0m If you need support, post the output of `emerge --info '=sci-libs/ccp4-libs-6.1.3-r11'`, > [31;01m*[0m the complete build log and the output of `emerge -pqv '=sci-libs/ccp4-libs-6.1.3-r11'`. >/usr/lib64/portage/bin/isolated-functions.sh: line 213: wait: `Failed Running automake !': not a pid or valid job spec > [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r11/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r11/temp/environment'. > [31;01m*[0m Working directory: '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r11/work/ccp4-6.1.3/src/pisa' > [31;01m*[0m S: '/var/tmp/portage/sci-libs/ccp4-libs-6.1.3-r11/work/ccp4-6.1.3'
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