Go to:
Gentoo Home
Documentation
Forums
Lists
Bugs
Planet
Store
Wiki
Get Gentoo!
Gentoo's Bugzilla – Attachment 306811 Details for
Bug 409817
sys-cluster/openmpi-1.5.4-r3 fails to build when --param is in CFLAGS
Home
|
New
–
[Ex]
|
Browse
|
Search
|
Privacy Policy
|
[?]
|
Reports
|
Requests
|
Help
|
New Account
|
Log In
[x]
|
Forgot Password
Login:
[x]
sys-cluster/openmpi-1.5.4-r3 build.log of failure
build.log (text/plain), 12.20 KB, created by
Richard Yao (RETIRED)
on 2012-03-27 02:19:12 UTC
(
hide
)
Description:
sys-cluster/openmpi-1.5.4-r3 build.log of failure
Filename:
MIME Type:
Creator:
Richard Yao (RETIRED)
Created:
2012-03-27 02:19:12 UTC
Size:
12.20 KB
patch
obsolete
>[32;01m * [39;49;00mPackage: sys-cluster/openmpi-1.5.4-r3 >[32;01m * [39;49;00mRepository: gentoo_prefix >[32;01m * [39;49;00mMaintainer: jsbronder@gentoo.org cluster@gentoo.org >[32;01m * [39;49;00mUSE: amd64 cxx elibc_glibc fortran ipv6 kernel_linux numa prefix userland_GNU >[32;01m * [39;49;00mFEATURES: preserve-libs > > [32;01m*[0m OpenMPI has an overwhelming count of configuration options. > [32;01m*[0m Don't forget the EXTRA_ECONF environment variable can let you > [32;01m*[0m specify configure options if you find them necessary. > >>>> Unpacking source... >>>> Unpacking openmpi-1.5.4.tar.bz2 to /nfs/user03/richard/gentoo/var/tmp/portage/sys-cluster/openmpi-1.5.4-r3/work >>>> Source unpacked in /nfs/user03/richard/gentoo/var/tmp/portage/sys-cluster/openmpi-1.5.4-r3/work >>>> Preparing source in /nfs/user03/richard/gentoo/var/tmp/portage/sys-cluster/openmpi-1.5.4-r3/work/openmpi-1.5.4 ... > [32;01m*[0m Applying openmpi-r24328.patch ... >[A[263C [34;01m[ [32;01mok[34;01m ][0m >>>> Source prepared. >>>> Configuring source in /nfs/user03/richard/gentoo/var/tmp/portage/sys-cluster/openmpi-1.5.4-r3/work/openmpi-1.5.4 ... > * econf: updating openmpi-1.5.4/config/config.guess with /nfs/user03/richard/gentoo/usr/share/gnuconfig/config.guess > * econf: updating openmpi-1.5.4/config/config.sub with /nfs/user03/richard/gentoo/usr/share/gnuconfig/config.sub > * econf: updating openmpi-1.5.4/ompi/contrib/vt/vt/config/config.guess with /nfs/user03/richard/gentoo/usr/share/gnuconfig/config.guess > * econf: updating openmpi-1.5.4/ompi/contrib/vt/vt/config/config.sub with /nfs/user03/richard/gentoo/usr/share/gnuconfig/config.sub > * econf: updating openmpi-1.5.4/ompi/contrib/vt/vt/extlib/otf/config/config.guess with /nfs/user03/richard/gentoo/usr/share/gnuconfig/config.guess > * econf: updating openmpi-1.5.4/ompi/contrib/vt/vt/extlib/otf/config/config.sub with /nfs/user03/richard/gentoo/usr/share/gnuconfig/config.sub > * econf: updating openmpi-1.5.4/ompi/mca/io/romio/romio/confdb/config.guess with /nfs/user03/richard/gentoo/usr/share/gnuconfig/config.guess > * econf: updating openmpi-1.5.4/ompi/mca/io/romio/romio/confdb/config.sub with /nfs/user03/richard/gentoo/usr/share/gnuconfig/config.sub > * econf: updating openmpi-1.5.4/opal/libltdl/config/config.guess with /nfs/user03/richard/gentoo/usr/share/gnuconfig/config.guess > * econf: updating openmpi-1.5.4/opal/libltdl/config/config.sub with /nfs/user03/richard/gentoo/usr/share/gnuconfig/config.sub >./configure --prefix=/nfs/user03/richard/gentoo/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/nfs/user03/richard/gentoo/usr/share/man --infodir=/nfs/user03/richard/gentoo/usr/share/info --datadir=/nfs/user03/richard/gentoo/usr/share --sysconfdir=/nfs/user03/richard/gentoo/etc --localstatedir=/nfs/user03/richard/gentoo/var/lib --libdir=/nfs/user03/richard/gentoo/usr/lib --disable-dependency-tracking --sysconfdir=/nfs/user03/richard/gentoo/etc/openmpi --enable-pretty-print-stacktrace --enable-orterun-prefix-by-default --with-hwloc=/nfs/user03/richard/gentoo/usr --enable-contrib-no-build=vt --with-libnuma=/nfs/user03/richard/gentoo/usr --enable-mpi-cxx --disable-io-romio --disable-heterogeneous --enable-ipv6 --without-openib --without-knem --with-libnuma=/nfs/user03/richard/gentoo/usr --without-mx --without-tm --without-psm --without-sctp --without-slurm > >============================================================================ >== Configuring Open MPI >============================================================================ > >*** Startup tests >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking target system type... x86_64-pc-linux-gnu >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /nfs/user03/richard/gentoo/bin/grep >checking for egrep... /nfs/user03/richard/gentoo/bin/grep -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking minix/config.h usability... no >checking minix/config.h presence... no >checking for minix/config.h... no >checking whether it is safe to define __EXTENSIONS__... yes >checking for a BSD-compatible install... /nfs/user03/richard/gentoo/usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /nfs/user03/richard/gentoo/bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking for style of include used by make... GNU >checking how to create a ustar tar archive... gnutar >checking dependency style of x86_64-pc-linux-gnu-gcc... none > >*** Checking versions >checking Open MPI version... 1.5.4 >checking Open MPI release date... Aug 18, 2011 >checking Open MPI Subversion repository version... r25060 >checking Open MPI Run-Time Environment version... 1.5.4 >checking Open MPI Run-Time Environment release date... Aug 18, 2011 >checking Open MPI Run-Time Environment Subversion repository version... r25060 >checking Open Portable Access Layer version... 1.5.4 >checking Open Portable Access Layer release date... Aug 18, 2011 >checking Open Portable Access Layer Subversion repository version... r25060 > >*** Initialization, setup >configure: builddir: /nfs/user03/richard/gentoo/var/tmp/portage/sys-cluster/openmpi-1.5.4-r3/work/openmpi-1.5.4 >configure: srcdir: /nfs/user03/richard/gentoo/var/tmp/portage/sys-cluster/openmpi-1.5.4-r3/work/openmpi-1.5.4 >installing to directory "/nfs/user03/richard/gentoo/usr" > >*** OPAL Configuration options >checking if want to run code coverage... no >checking if want to compile with branch probabilities... no >checking if want to debug memory usage... no >checking if want to profile memory usage... no >checking if want developer-level compiler pickyness... no >checking if want developer-level debugging code... no >checking if want to install project-internal header files... no >checking if want pretty-print stacktrace... yes >checking if want pty support... yes >checking if want weak symbol support... yes >checking if want dlopen support... yes >checking if want heterogeneous support... no >checking if want trace file debugging... no >checking if want fault tolerance... Disabled fault tolerance >checking if want IPv6 support... yes >checking if want package/brand string... Open MPI richard@sirius Distribution >checking if want ident string... 1.5.4 >checking if want to use an alternative checksum algo for messages... no >checking maximum length of processor name... 256 >checking maximum length of error string... 256 >checking maximum length of object name... 64 >checking maximum length of info key... 36 >checking maximum length of info val... 256 >checking maximum length of port name... 1024 >checking maximum length of datarep string... 128 > >*** ORTE Configuration options >checking if want full RTE support... yes >checking if want orterun "--prefix" behavior to be enabled by default... yes >checking if want reliable multicast... no > >*** OMPI Configuration options >checking if want compile-time warnings inside of mpi.h... no >checking if want sparse process groups... no >checking if want peruse support... no >checking if want Fortran 77 bindings... yes >checking if want Fortran 90 bindings... yes >checking Fortran 90 bindings "size"... small >checking if want PMPI... yes >checking if want C++ bindings... yes >checking if want MPI::SEEK_SET support... yes >checking if want run-time MPI parameter checking... runtime >checking max supported array dimension in F90 MPI bindings... 4 > >============================================================================ >== Compiler and preprocessor tests >============================================================================ > >*** C compiler and preprocessor >checking for x86_64-pc-linux-gnu-gcc... (cached) x86_64-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... (cached) yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... (cached) yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed >checking whether x86_64-pc-linux-gnu-gcc and cc understand -c and -o together... yes >checking for the C compiler vendor... gnu >checking for ANSI C header files... (cached) yes >checking if x86_64-pc-linux-gnu-gcc supports -finline-functions... yes >checking if x86_64-pc-linux-gnu-gcc supports -fno-strict-aliasing... yes >configure: WARNING: -fno-strict-aliasing has been added to CFLAGS >checking if x86_64-pc-linux-gnu-gcc supports __builtin_expect... no >checking if x86_64-pc-linux-gnu-gcc supports __builtin_prefetch... no >checking for C optimization flags... -DNDEBUG -march=nocona -mcx16 -mno-sahf -mno-movbe -mno-aes -mno-pclmul -mno-popcnt -mno-abm -mno-lwp -mno-fma -mno-fma4 -mno-xop -mno-bmi -mno-tbm -mno-avx -mno-sse4.2 -mno-sse4.1 --param l1-cache-size=16 l1-cache-line-size=64 l2-cache-size=1024 -mtune=nocona -O2 -finline-functions -fno-strict-aliasing >checking for Interix environment... no >checking for C ident string support... >checking for int8_t... no >checking for uint8_t... no >checking for int16_t... no >checking for uint16_t... no >checking for int32_t... no >checking for uint32_t... no >checking for int64_t... no >checking for uint64_t... no >checking for int128_t... no >checking for uint128_t... no >checking for long long... no >checking for long double... no >checking for float _Complex... no >checking for double _Complex... no >checking for long double _Complex... no >checking for intptr_t... no >checking for uintptr_t... no >checking for mode_t... no >checking for ssize_t... no >checking for ptrdiff_t... no >checking size of char... 0 >checking size of short... 0 >checking size of int... 0 >checking size of long... 0 >checking size of float... 0 >checking size of double... 0 >checking size of void *... 0 >checking size of size_t... 0 >checking size of wchar_t... 0 >checking alignment of _Bool... configure: WARNING: *** Problem running configure test! >configure: WARNING: *** See config.log for details. >configure: error: *** Cannot continue. > >!!! Please attach the following file when seeking support: >!!! /nfs/user03/richard/gentoo/var/tmp/portage/sys-cluster/openmpi-1.5.4-r3/work/openmpi-1.5.4/config.log > [31;01m*[0m ERROR: sys-cluster/openmpi-1.5.4-r3 failed (configure phase): > [31;01m*[0m econf failed > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 85: Called call-ebuildshell 'src_configure' > [31;01m*[0m environment, line 504: Called src_configure > [31;01m*[0m environment, line 2390: Called econf '--sysconfdir=/nfs/user03/richard/gentoo/etc/openmpi' '--enable-pretty-print-stacktrace' '--enable-orterun-prefix-by-default' '--with-hwloc=/nfs/user03/richard/gentoo/usr' '--enable-contrib-no-build=vt' '--with-libnuma=/nfs/user03/richard/gentoo/usr' '--enable-mpi-cxx' '--disable-io-romio' '--disable-heterogeneous' '--enable-ipv6' '--without-openib' '--without-knem' '--with-libnuma=/nfs/user03/richard/gentoo/usr' '--without-mx' '--without-tm' '--without-psm' '--without-sctp' '--without-slurm' > [31;01m*[0m phase-helpers.sh, line 467: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m die "econf failed" > [31;01m*[0m > [31;01m*[0m If you need support, post the output of 'emerge --info =sys-cluster/openmpi-1.5.4-r3', > [31;01m*[0m the complete build log and the output of 'emerge -pqv =sys-cluster/openmpi-1.5.4-r3'. > [31;01m*[0m The complete build log is located at '/nfs/user03/richard/gentoo/var/tmp/portage/sys-cluster/openmpi-1.5.4-r3/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/nfs/user03/richard/gentoo/var/tmp/portage/sys-cluster/openmpi-1.5.4-r3/temp/environment'. > [31;01m*[0m S: '/nfs/user03/richard/gentoo/var/tmp/portage/sys-cluster/openmpi-1.5.4-r3/work/openmpi-1.5.4'
You cannot view the attachment while viewing its details because your browser does not support IFRAMEs.
View the attachment on a separate page
.
View Attachment As Raw
Actions:
View
Attachments on
bug 409817
: 306811