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Gentoo's Bugzilla – Attachment 282969 Details for
Bug 378851
[science overlay] sci-libs/superlu-4.1-r1 and sci-libs/arpack-96-r2 fail to compile with sci-libs/mkl-10.3.4.191
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Attached sci-libs/superlu-4.1-r1 build log.
superlu.build.log (text/plain), 8.60 KB, created by
Hao Xiong
on 2011-08-12 00:26:28 UTC
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Description:
Attached sci-libs/superlu-4.1-r1 build log.
Filename:
MIME Type:
Creator:
Hao Xiong
Created:
2011-08-12 00:26:28 UTC
Size:
8.60 KB
patch
obsolete
> * Package: sci-libs/superlu-4.1-r1 > * Repository: gentoo > * Maintainer: sci@gentoo.org > * USE: amd64 elibc_glibc kernel_linux multilib userland_GNU > * FEATURES: sandbox splitdebug > * Applying superlu-4.1-autotools.patch ... > [ ok ] > * Running eautoreconf in '/var/tmp/portage/sci-libs/superlu-4.1-r1/work/SuperLU_4.1' ... > * Running aclocal ... > [ ok ] > * Running libtoolize --copy --force --install --automake ... > [ ok ] > * Running aclocal ... > [ ok ] > * Running autoconf ... > [ ok ] > * Running autoheader ... > [ ok ] > * Running automake --add-missing --copy --foreign ... > [ ok ] > * Running elibtoolize in: SuperLU_4.1/ > * Applying portage-1.2.0.patch ... > * Applying sed-1.5.6.patch ... > * Applying as-needed-2.2.6.patch ... >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking build system type... x86_64-pc-linux-gnu >checking host system type... x86_64-pc-linux-gnu >checking how to print strings... printf >checking for style of include used by make... GNU >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3 >checking for a sed that does not truncate output... /bin/sed >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for fgrep... /bin/grep -F >checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld >checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B >checking the name lister (/usr/bin/nm -B) interface... BSD nm >checking whether ln -s works... yes >checking the maximum length of command line arguments... 1572864 >checking whether the shell understands some XSI constructs... yes >checking whether the shell understands "+="... yes >checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop >checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop >checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r >checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump >checking how to recognize dependent libraries... pass_all >checking for x86_64-pc-linux-gnu-dlltool... no >checking for dlltool... no >checking how to associate runtime and link libraries... printf %s\n >checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar >checking for archiver @FILE support... @ >checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip >checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib >checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok >checking for sysroot... no >checking for x86_64-pc-linux-gnu-mt... no >checking for mt... no >checking if : is a manifest tool... no >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking for dlfcn.h... yes >checking for objdir... .libs >checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC >checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes >checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for x86_64-pc-linux-gnu-g77... no >checking for x86_64-pc-linux-gnu-xlf... no >checking for x86_64-pc-linux-gnu-f77... no >checking for x86_64-pc-linux-gnu-frt... no >checking for x86_64-pc-linux-gnu-pgf77... no >checking for x86_64-pc-linux-gnu-cf77... no >checking for x86_64-pc-linux-gnu-fort77... no >checking for x86_64-pc-linux-gnu-fl32... no >checking for x86_64-pc-linux-gnu-af77... no >checking for x86_64-pc-linux-gnu-xlf90... no >checking for x86_64-pc-linux-gnu-f90... no >checking for x86_64-pc-linux-gnu-pgf90... no >checking for x86_64-pc-linux-gnu-pghpf... no >checking for x86_64-pc-linux-gnu-epcf90... no >checking for x86_64-pc-linux-gnu-gfortran... x86_64-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether x86_64-pc-linux-gnu-gfortran accepts -g... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... no >checking for x86_64-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if x86_64-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if x86_64-pc-linux-gnu-gfortran static flag -static works... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking if x86_64-pc-linux-gnu-gfortran supports -c -o file.o... (cached) yes >checking whether the x86_64-pc-linux-gnu-gfortran linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes >checking dynamic linker characteristics... (cached) GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking how to get verbose linking output from x86_64-pc-linux-gnu-gfortran... -v >checking for Fortran 77 libraries of x86_64-pc-linux-gnu-gfortran... -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.2 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.2/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.2/../../../../x86_64-pc-linux-gnu/lib -L/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.2/../../.. -lgfortran -lm >checking for dummy main to link with Fortran 77 libraries... none >checking for Fortran 77 name-mangling scheme... lower case, underscore, no extra underscore >checking for sgemm_ in -Wl,--start-group -Wl,--end-group -fopenmp -L/opt/intel/composerxe-2011.4.191/mkl/lib/intel64 -lmkl_gf_lp64 -lmkl_mc -lmkl_def -lmkl_gnu_thread -liomp5 -lmkl_core -lpthread ... no >checking if sgemm_ is being linked in already... no >checking for ATL_xerbla in -latlas... no >checking for sgemm_ in -lblas... no >checking for sgemm_ in -lmkl... no >checking for sgemm_ in -framework vecLib... no >checking for sgemm_ in -lcxml... no >checking for sgemm_ in -ldxml... no >checking for sgemm_ in -lscs... no >checking for sgemm_ in -lcomplib.sgimath... no >checking for sgemm_ in -lblas... (cached) no >checking for sgemm_ in -lblas... (cached) no >configure: error: Cannot find blas libraries > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/sci-libs/superlu-4.1-r1/work/SuperLU_4.1/config.log > * ERROR: sci-libs/superlu-4.1-r1 failed (configure phase): > * econf failed > * > * Call stack: > * ebuild.sh, line 56: Called src_configure > * environment, line 2856: Called econf '--with-blas=-Wl,--start-group -Wl,--end-group -fopenmp -L/opt/intel/composerxe-2011.4.191/mkl/lib/intel64 -lmkl_gf_lp64 -lmkl_mc -lmkl_def -lmkl_gnu_thread -liomp5 -lmkl_core -lpthread ' '--disable-static' > * ebuild.sh, line 557: Called die > * The specific snippet of code: > * die "econf failed" > * > * If you need support, post the output of 'emerge --info =sci-libs/superlu-4.1-r1', > * the complete build log and the output of 'emerge -pqv =sci-libs/superlu-4.1-r1'. > * The complete build log is located at '/var/tmp/portage/sci-libs/superlu-4.1-r1/temp/build.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-libs/superlu-4.1-r1/temp/environment'. > * S: '/var/tmp/portage/sci-libs/superlu-4.1-r1/work/SuperLU_4.1'
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bug 378851
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