/var/log/portage/build/sci-chemistry/gromacs-4.5.4-r2:20110717-183231.log

gromacs-4.5.4-r2:20110717-183231.log (text/plain), 217.34 KB, created by Justin Lecher (RETIRED) on 2011-07-17 18:37:43 UTC

[32;01m * [39;49;00mPackage:    sci-chemistry/gromacs-4.5.4-r2
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        X amd64 bash-completion blas elibc_glibc fftw kernel_linux lapack multilib single-precision sse2 threads userland_GNU xml
[32;01m * [39;49;00mFEATURES:   preserve-libs sandbox splitdebug userpriv usersandbox
>>> Unpacking source...
>>> Unpacking gromacs-4.5.4.tar.gz to /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work
>>> Unpacking 0001-Make-stack-non-executable-for-GAS-assembly.patch.gz to /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work
>>> Unpacking 0002-Make-stack-non-executable-for-ATT-assembly.patch.gz to /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4 ...
 [32;01m*[0m Applying 0001-Make-stack-non-executable-for-GAS-assembly.patch ...
[A[129C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying 0002-Make-stack-non-executable-for-ATT-assembly.patch ...
[A[129C [34;01m[ [32;01mok[34;01m ][0m
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4 ...
 [32;01m*[0m Configuring for float precision
removed `/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4/cmake/FindBLAS.cmake'
removed `/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4/cmake/FindLAPACK.cmake'
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4_float"
cmake --no-warn-unused-cli -C /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/temp/gentoo_common_config.cmake -DCMAKE_INSTALL_PREFIX=/usr -DGMX_FFT_LIBRARY=fftw3 -DGMX_X11=ON -DGMX_EXTERNAL_BLAS=ON -DGMX_GSL=OFF -DGMX_EXTERNAL_LAPACK=ON -DGMX_THREADS=ON -DGMX_XML=ON -DGMX_DEFAULT_SUFFIX=off -DGMX_ACCELERATION=sse -DGMX_DOUBLE=OFF -DGMX_MPI=OFF -DGMX_BINARY_SUFFIX= -DGMX_LIBS_SUFFIX= -DCMAKE_BUILD_TYPE=Gentoo -DCMAKE_INSTALL_DO_STRIP=OFF -DCMAKE_USER_MAKE_RULES_OVERRIDE=/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/temp/gentoo_rules.cmake  /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4
Not searching for unused variables given on the command line.
loading initial cache file /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/temp/gentoo_common_config.cmake
-- The C compiler identification is GNU
-- The CXX compiler identification is GNU
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc
-- Check for working C compiler: /usr/bin/x86_64-pc-linux-gnu-gcc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++
-- Check for working CXX compiler: /usr/bin/x86_64-pc-linux-gnu-g++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Performing Test CFLAGS_WARN
-- Performing Test CFLAGS_WARN - Success
-- Performing Test CFLAGS_EXCESS_PREC
-- Performing Test CFLAGS_EXCESS_PREC - Success
-- Performing Test CFLAGS_COPT
-- Performing Test CFLAGS_COPT - Success
-- Performing Test CFLAGS_NOINLINE
-- Performing Test CFLAGS_NOINLINE - Success
-- Performing Test CXXFLAGS_WARN
-- Performing Test CXXFLAGS_WARN - Success
-- Performing Test CXXFLAGS_EXCESS_PREC
-- Performing Test CXXFLAGS_EXCESS_PREC - Success
-- Performing Test CXXFLAGS_COPT
-- Performing Test CXXFLAGS_COPT - Success
-- Performing Test CXXFLAGS_NOINLINE
-- Performing Test CXXFLAGS_NOINLINE - Success
-- Using manually set binary suffix: ""
-- Using manually set library suffix: ""
-- Looking for include files HAVE_STRING_H
-- Looking for include files HAVE_STRING_H - found
-- Looking for include files HAVE_MATH_H
-- Looking for include files HAVE_MATH_H - found
-- Looking for include files HAVE_LIMITS_H
-- Looking for include files HAVE_LIMITS_H - found
-- Looking for include files HAVE_MEMORY_H
-- Looking for include files HAVE_MEMORY_H - found
-- Looking for include files HAVE_UNISTD_H
-- Looking for include files HAVE_UNISTD_H - found
-- Looking for include files HAVE_DIRECT_H
-- Looking for include files HAVE_DIRECT_H - not found.
-- Looking for include files HAVE_PWD_H
-- Looking for include files HAVE_PWD_H - found
-- Looking for include files HAVE_STDINT_H
-- Looking for include files HAVE_STDINT_H - found
-- Looking for include files HAVE_STDLIB_H
-- Looking for include files HAVE_STDLIB_H - found
-- Looking for include files HAVE_PTHREAD_H
-- Looking for include files HAVE_PTHREAD_H - found
-- Looking for include files HAVE_DIRENT_H
-- Looking for include files HAVE_DIRENT_H - found
-- Looking for include files HAVE_INTTYPES_H
-- Looking for include files HAVE_INTTYPES_H - found
-- Looking for include files HAVE_REGEX_H
-- Looking for include files HAVE_REGEX_H - found
-- Looking for include files HAVE_SYS_TYPES_H
-- Looking for include files HAVE_SYS_TYPES_H - found
-- Looking for include files HAVE_SYS_STAT_H
-- Looking for include files HAVE_SYS_STAT_H - found
-- Looking for include files HAVE_SYS_TIME_H
-- Looking for include files HAVE_SYS_TIME_H - found
-- Looking for include files HAVE_RPC_RPC_H
-- Looking for include files HAVE_RPC_RPC_H - found
-- Looking for include files HAVE_RPC_XDR_H
-- Looking for include files HAVE_RPC_XDR_H - found
-- Looking for include files HAVE_XMMINTRIN_H
-- Looking for include files HAVE_XMMINTRIN_H - found
-- Looking for include files HAVE_EMMINTRIN_H
-- Looking for include files HAVE_EMMINTRIN_H - found
-- Looking for include files HAVE_PMMINTRIN_H
-- Looking for include files HAVE_PMMINTRIN_H - found
-- Looking for include files HAVE_SMMINTRIN_H
-- Looking for include files HAVE_SMMINTRIN_H - found
-- Looking for include files HAVE_IO_H
-- Looking for include files HAVE_IO_H - not found.
-- Looking for strcasecmp
-- Looking for strcasecmp - found
-- Looking for strdup
-- Looking for strdup - found
-- Looking for vprintf
-- Looking for vprintf - found
-- Looking for memcmp
-- Looking for memcmp - found
-- Looking for posix_memalign
-- Looking for posix_memalign - found
-- Looking for memalign
-- Looking for memalign - found
-- Looking for _aligned_malloc
-- Looking for _aligned_malloc - not found
-- Looking for gettimeofday
-- Looking for gettimeofday - found
-- Looking for isnan
-- Looking for isnan - found
-- Looking for _isnan
-- Looking for _isnan - not found
-- Looking for isfinite
-- Looking for isfinite - not found
-- Looking for _isfinite
-- Looking for _isfinite - not found
-- Looking for fsync
-- Looking for fsync - found
-- Looking for _fileno
-- Looking for _fileno - not found
-- Looking for fileno
-- Looking for fileno - found
-- Looking for _commit
-- Looking for _commit - not found
-- Looking for sqrt in m
-- Looking for sqrt in m - found
-- Looking for cbrt in m
-- Looking for cbrt in m - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of bool
-- Check size of bool - failed
-- Check size of int
-- Check size of int - done
-- Check size of long int
-- Check size of long int - done
-- Check size of long long int
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-- Check size of off_t
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-- Check size of void *
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-- Check size of gid_t
-- Check size of gid_t - done
-- Check size of size_t
-- Check size of size_t - done
-- Check size of off_t
-- Check size of off_t - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- checking for module 'libxml-2.0'
--   found libxml-2.0, version 2.7.8
-- Found LibXml2: /usr/lib64/libxml2.so 
-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so
-- Looking for XOpenDisplay in /usr/lib64/libX11.so;/usr/lib64/libXext.so - found
-- Looking for gethostbyname
-- Looking for gethostbyname - found
-- Looking for connect
-- Looking for connect - found
-- Looking for remove
-- Looking for remove - found
-- Looking for shmat
-- Looking for shmat - found
-- Looking for IceConnectionNumber in ICE
-- Looking for IceConnectionNumber in ICE - found
-- Found X11: /usr/lib64/libX11.so
-- Looking for include files CMAKE_HAVE_PTHREAD_H
-- Looking for include files CMAKE_HAVE_PTHREAD_H - found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE 
-- Looking for include files HAVE_SCHED_H
-- Looking for include files HAVE_SCHED_H - found
-- Looking for sysconf
-- Looking for sysconf - found
-- Atomics found
-- Setting build user & time
-- Setting build user & time - OK
-- Checking floating point format
-- Checking floating point format - unknown
-- Checking for 64-bit off_t
-- Checking for 64-bit off_t - present
-- Checking for fseeko/ftello
-- Checking for fseeko/ftello - present
-- Checking for return type of signals
-- Checking for return type of signals - void
-- Checking for SIGUSR1
-- Checking for SIGUSR1 - found
-- Checking for inline keyword
-- Checking for inline keyword - inline
-- Checking for inline keyword
-- Checking for inline keyword - inline
-- Checking for pipe support
-- Checking for GCC x86 inline asm
-- Checking for GCC x86 inline asm - supported
-- Checking for MSVC x86 inline asm
-- Checking for MSVC x86 inline asm - not supported
-- Checking for system XDR support
-- Checking for system XDR support - present
-- Found FFTW3F: /usr/lib64/libfftw3f.so 
-- The Fortran compiler identification is GNU
-- Check for working Fortran compiler: /usr/bin/gfortran
-- Check for working Fortran compiler: /usr/bin/gfortran  -- works
-- Detecting Fortran compiler ABI info
-- Detecting Fortran compiler ABI info - done
-- Checking whether /usr/bin/gfortran supports Fortran 90
-- Checking whether /usr/bin/gfortran supports Fortran 90 -- yes
-- checking for module 'blas'
--   found blas, version 3.9.41
-- checking for module 'lapack'
--   found lapack, version 3.9.41
-- The ASM-ATT compiler identification is GNU
-- Found assembler: /usr/bin/as
-- <<< Gentoo configuration >>>
Build type      Gentoo
Install path    /usr
Compiler flags:
C                --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -O3 -pipe -march=corei7 -mcx16 -msahf -mpopcnt -msse4.2 -mtune=corei7 -frecord-gcc-switches -g -Wdisabled-optimization -Wimplicit-function-declaration 
C++              --param l1-cache-size=32 --param l1-cache-line-size=64 --param l2-cache-size=8192 -O3 -pipe -march=corei7 -mcx16 -msahf -mpopcnt -msse4.2 -mtune=corei7 -frecord-gcc-switches -g -Wdisabled-optimization -Wenum-compare 
Linker flags:
Executable        -Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common
Module           -Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common
Shared           -Wl,-O1 -Wl,--as-needed -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common -Wl,-O1 -Wl,--hash-style=gnu -Wl,--sort-common

-- Configuring done
-- Generating done
-- Build files have been written to: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4_float
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4 ...
 [32;01m*[0m Compiling for float precision
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4_float"
make -j16 -l12 
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>>> Source compiled.
>>> Test phase [not enabled]: sci-chemistry/gromacs-4.5.4-r2

>>> Install gromacs-4.5.4-r2 into /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/ category sci-chemistry
>>> Working in BUILD_DIR: "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4_float"
make -j16 -l12 DESTDIR=/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/ install 
[ 40%] Built target gmx
[ 43%] Built target ngmx
[ 46%] Built target g_xrama
[ 58%] Built target md
[ 63%] Built target gmxpreprocess
[ 63%] [ 64%] [ 64%] [ 64%] Built target g_luck
[ 65%] Built target g_protonate
Built target gmxcheck
Built target g_x2top
Built target gmxdump
[ 65%] [ 65%] Built target grompp
[ 66%] Built target tpbconv
Built target pdb2gmx
[ 68%] Built target mdrun
[ 85%] Built target gmxana
[ 85%] [ 85%] Built target g_anaeig
Built target editconf
[ 85%] [ 86%] [ 86%] [ 86%] Built target eneconv
Built target g_analyze
Built target do_dssp
Built target g_anadock
[ 86%] [ 87%] Built target g_current
Built target g_density
[ 87%] [ 87%] [ 87%] Built target g_covar
Built target g_dielectric
[ 87%] Built target g_dipoles
Built target g_densmap
[ 87%] [ 88%] Built target g_disre
Built target g_dist
[ 88%] [ 88%] [ 88%] Built target g_confrms
[ 88%] Built target g_dyndom
[ 88%] [ 88%] Built target g_clustsize
Built target g_enemat
Built target g_dih
Built target g_energy
[ 89%] [ 89%] Built target g_cluster
Built target g_chi
[ 90%] [ 90%] [ 90%] Built target g_gyrate
Built target g_filter
Built target g_bar
[ 90%] [ 90%] [ 90%] [ 90%] Built target g_bundle
[ 90%] Built target g_h2order
Built target g_bond
Built target g_angle
Built target g_hbond
[ 90%] [ 90%] [ 90%] [ 91%] Built target g_helix
[ 91%] [ 91%] [ 91%] Built target g_kinetics
Built target g_helixorient
Built target g_lie
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Built target g_mdmat
[ 91%] Built target g_membed
[ 92%] Built target g_morph
Built target g_msd
[ 92%] [ 92%] Built target g_nmeig
Built target g_nmens
[ 92%] [ 92%] [ 92%] Built target g_nmtraj
Built target g_polystat
Built target g_pme_error
[ 92%] [ 92%] [ 93%] [ 93%] Built target g_potential
Built target g_options
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[ 93%] [ 94%] Built target g_rotmat
[ 94%] [ 94%] Built target g_rotacf
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[ 94%] [ 94%] Built target g_rmsf
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[ 94%] [ 95%] Built target g_select
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[ 95%] [ 95%] Built target g_spatial
[ 95%] Built target g_spol
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[ 95%] [ 95%] Built target g_sigeps
[ 95%] [ 95%] Built target g_rms
[ 96%] [ 96%] Built target g_rdf
Built target g_rama
Built target g_tcaf
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[ 96%] [ 96%] Built target g_tune_pme
Built target g_vanhove
[ 96%] Built target g_velacc
[ 97%] [ 97%] Built target genconf
Built target g_wheel
[ 98%] [ 98%] [ 98%] [ 98%] Built target genion
Built target g_wham
Built target genbox
Built target genrestr
[ 99%] [ 99%] [ 99%] Built target xpm2ps
Built target trjorder
Built target trjconv
[ 99%] Built target trjcat
[ 99%] [ 99%] Built target mk_angndx
Built target make_ndx
[100%] Built target make_edi
[36mInstall the project...
[0m-- Install configuration: "Gentoo"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/gromacs/.
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/gromacs/./tutor
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/gromacs/./tutor/mixed
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/gromacs/./tutor/mixed/grompp.mdp
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/gromacs/./tutor/mixed/mixed.pdb
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/gromacs/./tutor/methanol
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/gromacs/./html/online/pdb.html
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./gmx_wallcycle.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./molfile_plugin.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./writeps.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./princ.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./trnio.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./gmx_blas.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./gmx_ana.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./gmx_fft.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./mdatoms.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./poscalc.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./histogram.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./gmx_lapack.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./strdb.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./gmxcpp.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./resall.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./qmmm.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./rbin.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./gmx_ga2la.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./perf_est.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./gmxfio.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./gmx_cyclecounter.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./network.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./symtab.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./vmdio.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./xtcio.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./matio.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./pull.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./3dview.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./atomprop.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./gstat.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./splitter.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./coulomb.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./partdec.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./gmx_sort.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./orires.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./gmx_sse2_double.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./mvdata.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./sighandler.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./md5.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./xvgr.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./gmx_arpack.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./mdebin.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./enxio.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./nrjac.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./rmpbc.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./vcm.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./centerofmass.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./disre.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./gen_ad.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./calcmu.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./nonbonded.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./vec.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./main.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./wgms.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./invblock.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./ebin.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./confio.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./sysstuff.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./chargegroup.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./topsort.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./mainpage.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./tpxio.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./gpp_atomtype.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./txtdump.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./sparsematrix.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./selparam.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./tmpi.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./typedefs.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./pppm.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./types
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./types/qmmmrec.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./types/nrnb.h
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/include/gromacs/./types/fcdata.h
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/trjcat.1
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/mk_angndx.1
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_confrms.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/do_dssp.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_membed.1
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_tcaf.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_helixorient.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_msd.1
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_rms.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/gmxdump.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/genion.1
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_morph.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/genrestr.1
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_potential.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_hbond.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_rmsdist.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_x2top.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_protonate.1
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_anadock.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_traj.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_chi.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_cluster.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_dipoles.1
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_rmsf.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_vanhove.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_lie.1
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-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/grompp.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_disre.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_sigeps.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_dist.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_clustsize.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_xrama.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/make_ndx.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_saltbr.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_sgangle.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_wheel.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/gmxcheck.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/eneconv.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/editconf.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/genbox.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_helix.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_dielectric.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_polystat.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_select.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_dih.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_angle.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_nmeig.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_spatial.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_wham.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_energy.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/trjconv.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_sas.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_densmap.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/tpbconv.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/pdb2gmx.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man1/g_tune_pme.1
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man7
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/share/man/./man7/gromacs.7
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/libgmx.so.6
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/libgmx.so
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/lib/libgmx.so.6" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/pkgconfig/libgmx.pc
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/libmd.so.6
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/libmd.so
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/lib/libmd.so.6" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/pkgconfig/libmd.pc
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/libgmxpreprocess.so.6
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/libgmxpreprocess.so
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/lib/libgmxpreprocess.so.6" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/mdrun
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/mdrun" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/grompp
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/grompp" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/tpbconv
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/tpbconv" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/pdb2gmx
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/pdb2gmx" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_protonate
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_protonate" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_luck
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_luck" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/gmxdump
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/gmxdump" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_x2top
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_x2top" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/gmxcheck
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/gmxcheck" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/pkgconfig/libgmxpreprocess.pc
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/libgmxana.so.6
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/libgmxana.so
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/lib/libgmxana.so.6" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/do_dssp
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/do_dssp" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/editconf
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/editconf" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/eneconv
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/eneconv" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/genbox
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/genbox" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/genconf
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/genconf" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/genrestr
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/genrestr" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_nmtraj
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_nmtraj" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/make_ndx
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/make_ndx" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/mk_angndx
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/mk_angndx" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/trjcat
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/trjcat" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/trjconv
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/trjconv" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/trjorder
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/trjorder" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_wheel
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_wheel" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/xpm2ps
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/xpm2ps" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/genion
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/genion" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_anadock
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_anadock" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/make_edi
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/make_edi" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_analyze
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_analyze" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_anaeig
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_anaeig" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_angle
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_angle" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_bond
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_bond" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_bundle
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_bundle" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_chi
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_chi" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_cluster
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_cluster" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_confrms
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_confrms" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_covar
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_covar" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_current
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_current" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_density
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_density" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_densmap
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_densmap" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_dih
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_dih" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_dielectric
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_dielectric" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_helixorient
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_helixorient" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_principal
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_principal" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_dipoles
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_dipoles" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_disre
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_disre" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_dist
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_dist" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_dyndom
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_dyndom" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_enemat
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_enemat" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_energy
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_energy" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_lie
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_lie" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_filter
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_filter" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_gyrate
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_gyrate" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_h2order
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_h2order" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_hbond
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_hbond" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_helix
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_helix" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_mindist
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_mindist" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_msd
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_msd" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_morph
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_morph" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_nmeig
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_nmeig" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_nmens
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_nmens" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_order
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_order" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_kinetics
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_kinetics" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_polystat
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_polystat" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_potential
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_potential" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_rama
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_rama" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_rdf
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_rdf" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_rms
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_rms" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_rmsf
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_rmsf" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_rotacf
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_rotacf" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_saltbr
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_saltbr" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_sas
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_sas" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_select
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_select" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_sgangle
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_sgangle" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_sham
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_sham" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_sorient
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_sorient" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_spol
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_spol" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_spatial
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_spatial" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_tcaf
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_tcaf" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_traj
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_traj" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_tune_pme
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_tune_pme" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_vanhove
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_vanhove" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_velacc
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_velacc" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_clustsize
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_clustsize" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_mdmat
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_mdmat" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_wham
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_wham" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_sigeps
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_sigeps" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_bar
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_bar" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_membed
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_membed" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_pme_error
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_pme_error" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_rmsdist
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_rmsdist" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_rotmat
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_rotmat" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_options
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_options" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/lib/pkgconfig/libgmxana.pc
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/ngmx
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/ngmx" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/g_xrama
-- Set runtime path of "/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image//usr/bin/g_xrama" to "/usr/lib"
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/GMXRC
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/GMXRC.bash
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/GMXRC.zsh
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/GMXRC.csh
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/completion.bash
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/completion.csh
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/completion.zsh
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/demux.pl
-- Installing: /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/usr/bin/xplor2gmx.pl
>>> Completed installing gromacs-4.5.4-r2 into /var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/image/

strip: x86_64-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/lib/libgmxpreprocess.so.6
   usr/lib/libgmx.so.6
   usr/lib/libgmxana.so.6
   usr/lib/libmd.so.6
   usr/bin/g_dih
   usr/bin/g_sorient
   usr/bin/grompp
   usr/bin/g_principal
   usr/bin/genion
   usr/bin/g_confrms
   usr/bin/g_wham
   usr/bin/g_helixorient
   usr/bin/editconf
   usr/bin/trjconv
   usr/bin/g_sgangle
   usr/bin/gmxcheck
   usr/bin/g_velacc
   usr/bin/trjorder
   usr/bin/g_gyrate
   usr/bin/g_anaeig
   usr/bin/pdb2gmx
   usr/bin/g_dyndom
   usr/bin/g_nmtraj
   usr/bin/g_dielectric
   usr/bin/xpm2ps
   usr/bin/g_covar
   usr/bin/g_sas
   usr/bin/g_helix
   usr/bin/gmxdump
   usr/bin/g_rdf
   usr/bin/g_clustsize
   usr/bin/genrestr
   usr/bin/g_luck
   usr/bin/g_density
   usr/bin/tpbconv
   usr/bin/trjcat
   usr/bin/eneconv
   usr/bin/g_traj
   usr/bin/g_rmsf
   usr/bin/g_msd
   usr/bin/g_disre
   usr/bin/g_energy
   usr/bin/genconf
   usr/bin/g_potential
   usr/bin/g_mindist
   usr/bin/g_dist
   usr/bin/g_spatial
   usr/bin/g_angle
   usr/bin/g_chi
   usr/bin/g_protonate
   usr/bin/g_bond
   usr/bin/g_saltbr
   usr/bin/g_enemat
   usr/bin/g_vanhove
   usr/bin/g_kinetics
   usr/bin/g_bar
   usr/bin/g_rama
   usr/bin/mdrun
   usr/bin/g_options
   usr/bin/g_cluster
   usr/bin/g_rotmat
   usr/bin/g_x2top
   usr/bin/do_dssp
   usr/bin/g_sigeps
   usr/bin/g_nmens
   usr/bin/g_current
   usr/bin/genbox
   usr/bin/g_wheel
   usr/bin/g_tune_pme
   usr/bin/make_edi
   usr/bin/g_mdmat
   usr/bin/g_spol
   usr/bin/make_ndx
   usr/bin/g_membed
   usr/bin/g_morph
   usr/bin/g_bundle
   usr/bin/g_lie
   usr/bin/g_nmeig
   usr/bin/g_xrama
   usr/bin/g_pme_error
   usr/bin/g_densmap
   usr/bin/g_rmsdist
   usr/bin/g_rms
   usr/bin/g_hbond
   usr/bin/g_filter
   usr/bin/g_analyze
   usr/bin/g_order
   usr/bin/g_polystat
   usr/bin/mk_angndx
   usr/bin/g_dipoles
   usr/bin/g_h2order
   usr/bin/g_anadock
   usr/bin/g_tcaf
   usr/bin/ngmx
   usr/bin/g_sham
   usr/bin/g_rotacf
   usr/bin/g_select
compressme (1/1)

  100 %             504 B / 3,895 B = 0.129                                    
ecompressdir: xz -z -e -9 -v /usr/share/man
./man1/g_bond.1 (1/90)

  100 %           1,272 B / 2,704 B = 0.470                                    

./man1/trjorder.1 (2/90)

  100 %           1,368 B / 3,234 B = 0.423                                    

./man1/g_covar.1 (3/90)

  100 %           1,488 B / 3,714 B = 0.401                                    

./man1/g_nmtraj.1 (4/90)

  100 %           1,260 B / 2,511 B = 0.502                                    

./man1/g_nmens.1 (5/90)

  100 %           1,032 B / 2,066 B = 0.500                                    

./man1/g_sham.1 (6/90)

  100 %           2,224 B / 6,245 B = 0.356                                    

./man1/g_mindist.1 (7/90)

  100 %           1,572 B / 3,927 B = 0.400                                    

./man1/trjcat.1 (8/90)

  100 %           1,556 B / 3,448 B = 0.451                                    

./man1/g_enemat.1 (9/90)

  100 %           1,712 B / 4,369 B = 0.392                                    

./man1/mk_angndx.1 (10/90)

  100 %             700 B / 1,215 B = 0.576                                    

./man1/genconf.1 (11/90)

  100 %           1,252 B / 2,541 B = 0.493                                    

./man1/g_velacc.1 (12/90)

  100 %           1,200 B / 2,815 B = 0.426                                    

./man1/g_confrms.1 (13/90)

  100 %           1,152 B / 2,542 B = 0.453                                    

./man1/do_dssp.1 (14/90)

  100 %           1,628 B / 3,719 B = 0.438                                    

./man1/g_membed.1 (15/90)

  100 %           2,568 B / 7,969 B = 0.322                                    

./man1/g_anaeig.1 (16/90)

  100 %           2,568 B / 7,487 B = 0.343                                    

./man1/g_bundle.1 (17/90)

  100 %           1,412 B / 3,552 B = 0.398                                    

./man1/g_tcaf.1 (18/90)

  100 %           2,012 B / 4,861 B = 0.414                                    

./man1/g_helixorient.1 (19/90)

  100 %           1,404 B / 3,312 B = 0.424                                    

./man1/g_msd.1 (20/90)

  100 %           2,064 B / 5,101 B = 0.405                                    

./man1/g_current.1 (21/90)

  100 %           2,032 B / 5,509 B = 0.369                                    

./man1/g_order.1 (22/90)

  100 %           1,652 B / 4,091 B = 0.404                                    

./man1/g_rms.1 (23/90)

  100 %           2,132 B / 5,620 B = 0.379                                    

./man1/gmxdump.1 (24/90)

  100 %           1,024 B / 1,998 B = 0.513                                    

./man1/genion.1 (25/90)

  100 %           1,868 B / 4,283 B = 0.436                                    

./man1/g_spol.1 (26/90)

  100 %           1,352 B / 3,028 B = 0.446                                    

./man1/g_h2order.1 (27/90)

  100 %           1,208 B / 2,521 B = 0.479                                    

./man1/g_bar.1 (28/90)

  100 %           1,960 B / 4,801 B = 0.408                                    

./man1/g_analyze.1 (29/90)

  100 %           3,484 B / 9,466 B = 0.368                                    

./man1/g_sorient.1 (30/90)

  100 %           1,360 B / 3,549 B = 0.383                                    

./man1/xpm2ps.1 (31/90)

  100 %           2,128 B / 5,264 B = 0.404                                    

./man1/g_rotacf.1 (32/90)

  100 %           1,452 B / 3,429 B = 0.423                                    

./man1/g_rama.1 (33/90)

  100 %             824 B / 1,481 B = 0.556                                    

./man1/g_rotmat.1 (34/90)

  100 %           1,388 B / 3,033 B = 0.458                                    

./man1/g_gyrate.1 (35/90)

  100 %           1,404 B / 3,369 B = 0.417                                    

./man1/g_dyndom.1 (36/90)

  100 %           1,220 B / 2,606 B = 0.468                                    

./man1/g_principal.1 (37/90)

  100 %             832 B / 1,822 B = 0.457                                    

./man1/g_morph.1 (38/90)

  100 %           1,216 B / 2,584 B = 0.471                                    

./man1/genrestr.1 (39/90)

  100 %           1,508 B / 3,435 B = 0.439                                    

./man1/g_mdmat.1 (40/90)

  100 %           1,108 B / 2,238 B = 0.495                                    

./man1/mdrun.1 (41/90)

  100 %          5,936 B / 17.3 KiB = 0.335                                    

./man1/make_edi.1 (42/90)

  100 %           3,596 B / 9,873 B = 0.364                                    

./man1/g_potential.1 (43/90)

  100 %           1,308 B / 2,979 B = 0.439                                    

./man1/g_hbond.1 (44/90)

  100 %           3,136 B / 8,648 B = 0.363                                    

./man1/g_rmsdist.1 (45/90)

  100 %           1,596 B / 3,800 B = 0.420                                    

./man1/g_x2top.1 (46/90)

  100 %           1,680 B / 3,705 B = 0.453                                    

./man1/g_protonate.1 (47/90)

  100 %             928 B / 1,847 B = 0.502                                    

./man1/ngmx.1 (48/90)

  100 %           1,076 B / 1,931 B = 0.557                                    

./man1/g_anadock.1 (49/90)

  100 %             888 B / 1,782 B = 0.498                                    

./man1/g_traj.1 (50/90)

  100 %           1,840 B / 5,171 B = 0.356                                    

./man1/g_chi.1 (51/90)

  100 %           3,244 B / 8,803 B = 0.369                                    

./man1/g_cluster.1 (52/90)

  100 %           2,580 B / 7,266 B = 0.355                                    

./man1/g_dipoles.1 (53/90)

  100 %           2,768 B / 7,741 B = 0.358                                    

./man1/g_rdf.1 (54/90)

  100 %           2,276 B / 5,434 B = 0.419                                    

./man1/g_density.1 (55/90)

  100 %           1,340 B / 2,903 B = 0.462                                    

./man1/g_rmsf.1 (56/90)

  100 %           1,504 B / 3,594 B = 0.418                                    

./man1/g_vanhove.1 (57/90)

  100 %           1,624 B / 4,017 B = 0.404                                    

./man1/g_lie.1 (58/90)

  100 %             900 B / 1,885 B = 0.477                                    

./man1/g_filter.1 (59/90)

  100 %           1,304 B / 3,019 B = 0.432                                    

./man1/grompp.1 (60/90)

  100 %           2,728 B / 6,792 B = 0.402                                    

./man1/g_disre.1 (61/90)

  100 %           1,456 B / 3,463 B = 0.420                                    

./man1/g_sigeps.1 (62/90)

  100 %             888 B / 1,838 B = 0.483                                    

./man1/g_dist.1 (63/90)

  100 %           1,004 B / 2,195 B = 0.457                                    

./man1/g_clustsize.1 (64/90)

  100 %           1,668 B / 4,084 B = 0.408                                    

./man1/g_xrama.1 (65/90)

  100 %             764 B / 1,309 B = 0.584                                    

./man1/make_ndx.1 (66/90)

  100 %             892 B / 1,696 B = 0.526                                    

./man1/g_saltbr.1 (67/90)

  100 %             960 B / 1,716 B = 0.559                                    

./man1/g_sgangle.1 (68/90)

  100 %           1,348 B / 3,156 B = 0.427                                    

./man1/g_wheel.1 (69/90)

  100 %             772 B / 1,328 B = 0.581                                    

./man1/gmxcheck.1 (70/90)

  100 %           1,652 B / 3,874 B = 0.426                                    

./man1/eneconv.1 (71/90)

  100 %           1,172 B / 2,384 B = 0.492                                    

./man1/editconf.1 (72/90)

  100 %           3,116 B / 8,016 B = 0.389                                    

./man1/genbox.1 (73/90)

  100 %           2,304 B / 5,390 B = 0.427                                    

./man1/g_helix.1 (74/90)

  100 %           1,728 B / 3,943 B = 0.438                                    

./man1/g_dielectric.1 (75/90)

  100 %           1,640 B / 4,045 B = 0.405                                    

./man1/g_polystat.1 (76/90)

  100 %           1,404 B / 3,268 B = 0.430                                    

./man1/g_select.1 (77/90)

  100 %           2,036 B / 5,881 B = 0.346                                    

./man1/g_dih.1 (78/90)

  100 %             972 B / 1,911 B = 0.509                                    

./man1/g_angle.1 (79/90)

  100 %           1,816 B / 4,625 B = 0.393                                    

./man1/g_nmeig.1 (80/90)

  100 %           1,092 B / 2,193 B = 0.498                                    

./man1/g_spatial.1 (81/90)

  100 %           2,204 B / 4,683 B = 0.471                                    

./man1/g_wham.1 (82/90)

  100 %           3,552 B / 9,546 B = 0.372                                    

./man1/g_energy.1 (83/90)

  100 %           3,164 B / 9,213 B = 0.343                                    

./man1/trjconv.1 (84/90)

  100 %          4,020 B / 11.0 KiB = 0.356                                    

./man1/g_sas.1 (85/90)

  100 %           1,784 B / 4,123 B = 0.433                                    

./man1/g_densmap.1 (86/90)

  100 %           1,768 B / 4,397 B = 0.402                                    

./man1/tpbconv.1 (87/90)

  100 %           1,340 B / 2,850 B = 0.470                                    

./man1/pdb2gmx.1 (88/90)

  100 %           3,520 B / 9,179 B = 0.383                                    

./man1/g_tune_pme.1 (89/90)

  100 %          3,908 B / 12.0 KiB = 0.318                                    

./man7/gromacs.7 (90/90)

  100 %          5,424 B / 14.6 KiB = 0.363                                    
ecompressdir: xz -z -e -9 -v /usr/share/doc
./gromacs-4.5.4-r2/AUTHORS (1/5)

  100 %               212 B / 203 B = 1.044                                    

./gromacs-4.5.4-r2/INSTALL.cmake (2/5)

  100 %           1,300 B / 2,375 B = 0.547                                    

./gromacs-4.5.4-r2/INSTALL-GPU (3/5)

  100 %           1,264 B / 2,274 B = 0.556                                    

./gromacs-4.5.4-r2/INSTALL.automake (4/5)

  100 %          5,168 B / 13.1 KiB = 0.386                                    

./gromacs-4.5.4-r2/README (5/5)

  100 %           1,900 B / 3,598 B = 0.528                                    
Files matching a file type that is not allowed:
   usr/lib/libgmxpreprocess.so.6
   usr/lib/libgmx.so.6
   usr/lib/libgmxana.so.6
   usr/lib/libmd.so.6
 [31;01m*[0m ERROR: sci-chemistry/gromacs-4.5.4-r2 failed:
 [31;01m*[0m   multilib-strict check failed!
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m   misc-functions.sh, line 992:  Called install_qa_check
 [31;01m*[0m   misc-functions.sh, line 716:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m   		[[ ${abort} == yes ]] && die "multilib-strict check failed!"
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of 'emerge --info =sci-chemistry/gromacs-4.5.4-r2',
 [31;01m*[0m the complete build log and the output of 'emerge -pqv =sci-chemistry/gromacs-4.5.4-r2'.
 [31;01m*[0m The complete build log is located at '/var/log/portage/build/sci-chemistry/gromacs-4.5.4-r2:20110717-183231.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/temp/environment'.
 [31;01m*[0m S: '/var/tmp/portage/sci-chemistry/gromacs-4.5.4-r2/work/gromacs-4.5.4'