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Gentoo's Bugzilla – Attachment 279957 Details for
Bug 375061
sci-biology/raxml does not build for non-SSE capable CPUs
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Build log
raxml-7.2.6:20110713-100929.log (text/plain), 3.37 KB, created by
Diego Elio Pettenò (RETIRED)
on 2011-07-13 10:54:04 UTC
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Description:
Build log
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Creator:
Diego Elio Pettenò (RETIRED)
Created:
2011-07-13 10:54:04 UTC
Size:
3.37 KB
patch
obsolete
> * Package: sci-biology/raxml-7.2.6 > * Repository: gentoo > * Maintainer: weaver@gentoo.org sci-biology@gentoo.org > * USE: elibc_glibc kernel_linux test threads userland_GNU x86 > * FEATURES: sandbox test userpriv usersandbox >>>> Unpacking source... >>>> Unpacking RAxML-7.2.6.tar.bz2 to /var/tmp/portage/sci-biology/raxml-7.2.6/work >>>> Source unpacked in /var/tmp/portage/sci-biology/raxml-7.2.6/work >>>> Preparing source in /var/tmp/portage/sci-biology/raxml-7.2.6/work/RAxML-7.2.6 ... > * Applying raxml-7.2.6-makefile.patch ... > [ ok ] >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/raxml-7.2.6/work/RAxML-7.2.6 ... >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-biology/raxml-7.2.6/work/RAxML-7.2.6 ... >make -j14 -f Makefile.gcc >i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D_GNU_SOURCE -c -o axml.o axml.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D_GNU_SOURCE -c -o raxmlParsimony.o raxmlParsimony.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D_GNU_SOURCE -c -o optimizeModel.o optimizeModel.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D_GNU_SOURCE -c -o multiple.o multiple.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D_GNU_SOURCE -c -o searchAlgo.o searchAlgo.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D_GNU_SOURCE -c -o topologies.o topologies.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D_GNU_SOURCE -c -o parsePartitions.o parsePartitions.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D_GNU_SOURCE -c -o treeIO.o treeIO.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D_GNU_SOURCE -c -o models.o models.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D_GNU_SOURCE -c -o bipartitionList.o bipartitionList.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D_GNU_SOURCE -c -o rapidBootstrap.o rapidBootstrap.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D_GNU_SOURCE -c -o evaluatePartialGenericSpecial.o evaluatePartialGenericSpecial.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D_GNU_SOURCE -c -o evaluateGenericSpecial.o evaluateGenericSpecial.c >i686-pc-linux-gnu-gcc -O2 -pipe -D_USE_PTHREADS -D_GNU_SOURCE -c -o newviewGenericSpecial.o newviewGenericSpecial.c >In file included from axml.c:61:0: >/usr/lib/gcc/i686-pc-linux-gnu/4.6.0/include/xmmintrin.h:32:3: error: #error "SSE instruction set not enabled" >axml.c: In function âmainâ: >axml.c:8391:30: error: â_MM_FLUSH_ZERO_ONâ undeclared (first use in this function) >axml.c:8391:30: note: each undeclared identifier is reported only once for each function it appears in >axml.c: In function âget_argsâ: >axml.c:5026:10: warning: ignoring return value of âgetcwdâ, declared with attribute warn_unused_result [-Wunused-result] >make: *** [axml.o] Error 1 >make: *** Waiting for unfinished jobs.... > * ERROR: sci-biology/raxml-7.2.6 failed (compile phase): > * emake failed > * > * If you need support, post the output of 'emerge --info =sci-biology/raxml-7.2.6', > * the complete build log and the output of 'emerge -pqv =sci-biology/raxml-7.2.6'. >/usr/lib/portage/bin/isolated-functions.sh: line 209: tinderbox_mask_pkg: command not found > * The complete build log is located at '/var/log/portage/build/sci-biology/raxml-7.2.6:20110713-100929.log'. > * The ebuild environment file is located at '/var/tmp/portage/sci-biology/raxml-7.2.6/temp/environment'. > * S: '/var/tmp/portage/sci-biology/raxml-7.2.6/work/RAxML-7.2.6'
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bug 375061
: 279957