Go to:
Gentoo Home
Documentation
Forums
Lists
Bugs
Planet
Store
Wiki
Get Gentoo!
Gentoo's Bugzilla – Attachment 272139 Details for
Bug 366009
sci-libs/hdf5[mpi] fails to configure
Home
|
New
–
[Ex]
|
Browse
|
Search
|
Privacy Policy
|
[?]
|
Reports
|
Requests
|
Help
|
New Account
|
Log In
[x]
|
Forgot Password
Login:
[x]
config.log
config.log (text/plain), 191.64 KB, created by
Eugene Shalygin
on 2011-05-04 22:17:52 UTC
(
hide
)
Description:
config.log
Filename:
MIME Type:
Creator:
Eugene Shalygin
Created:
2011-05-04 22:17:52 UTC
Size:
191.64 KB
patch
obsolete
>This file contains any messages produced by compilers while >running configure, to aid debugging if configure makes a mistake. > >It was created by HDF5 configure 1.8.6, which was >generated by GNU Autoconf 2.68. Invocation command line was > > $ ./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --disable-sharedlib-rpath --enable-production --docdir=/usr/share/doc/hdf5-1.8.6 --enable-deprecated-symbols --enable-shared --disable-debug --disable-fortran --enable-parallel --with-szlib --with-pthread --with-zlib --disable-threadsafe --disable-cxx > >## --------- ## >## Platform. ## >## --------- ## > >hostname = tiger >uname -m = x86_64 >uname -r = 2.6.38-gentoo-r4 >uname -s = Linux >uname -v = #1 SMP PREEMPT Wed May 4 15:41:52 CEST 2011 > >/usr/bin/uname -p = Intel(R) Core(TM) i7 CPU Q 720 @ 1.60GHz >/bin/uname -X = unknown > >/bin/arch = unknown >/usr/bin/arch -k = unknown >/usr/convex/getsysinfo = unknown >/usr/bin/hostinfo = unknown >/bin/machine = unknown >/usr/bin/oslevel = unknown >/bin/universe = unknown > >PATH: /usr/lib64/portage/bin/ebuild-helpers >PATH: /usr/local/sbin >PATH: /usr/local/bin >PATH: /usr/sbin >PATH: /usr/bin >PATH: /sbin >PATH: /bin >PATH: /opt/bin >PATH: /usr/x86_64-pc-linux-gnu/gcc-bin/4.5.2 > > >## ----------- ## >## Core tests. ## >## ----------- ## > >configure:3205: checking for a BSD-compatible install >configure:3273: result: /usr/bin/install -c >configure:3284: checking whether build environment is sane >configure:3334: result: yes >configure:3475: checking for a thread-safe mkdir -p >configure:3514: result: /bin/mkdir -p >configure:3527: checking for gawk >configure:3543: found /usr/bin/gawk >configure:3554: result: gawk >configure:3565: checking whether make sets $(MAKE) >configure:3587: result: yes >configure:3669: checking whether to enable maintainer-specific portions of Makefiles >configure:3678: result: no >configure:3705: checking build system type >configure:3719: result: x86_64-pc-linux-gnu >configure:3739: checking host system type >configure:3752: result: x86_64-pc-linux-gnu >configure:3810: checking shell variables initial values >A=hdf5-1.8.6.tar.bz2 >AA=hdf5-1.8.6.tar.bz2 >ABI=amd64 >ACCEPT_LICENSE=NCSA-HDF >ACLOCAL='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/missing --run aclocal-1.11' >ALSA_CARDS= >ALSA_PCM_PLUGINS='adpcm alaw asym copy dmix dshare dsnoop empty extplug file hooks iec958 ioplug ladspa lfloat linear meter mmap_emul mulaw multi null plug rate route share shm softvol' >AMTAR='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/missing --run tar' >AM_CFLAGS= >AM_CPPFLAGS= >AM_CXXFLAGS= >AM_FCFLAGS= >AM_LDFLAGS= >ANT_HOME=/usr/share/ant >APACHE2_MODULES='actions alias auth_basic authn_alias authn_anon authn_dbm authn_default authn_file authz_dbm authz_default authz_groupfile authz_host authz_owner authz_user autoindex cache cgi cgid dav dav_fs dav_lock deflate dir disk_cache env expires ext_filter file_cache filter headers include info log_config logio mem_cache mime mime_magic negotiation rewrite setenvif speling status unique_id userdir usertrack vhost_alias proxy' >ARCH=amd64 >ASFLAGS_x86=--32 >AUTOCONF='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/missing --run autoconf' >AUTOHEADER='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/missing --run autoheader' >AUTOMAKE='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/missing --run automake-1.11' >AWK=gawk >BASH=/bin/sh >BASHOPTS=cmdhist:extquote:force_fignore:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath >BASH_ALIASES=() >BASH_ARGC=([0]="22") >BASH_ARGV=([0]="--disable-cxx" [1]="--disable-threadsafe" [2]="--with-zlib" [3]="--with-pthread" [4]="--with-szlib" [5]="--enable-parallel" [6]="--disable-fortran" [7]="--disable-debug" [8]="--enable-shared" [9]="--enable-deprecated-symbols" [10]="--docdir=/usr/share/doc/hdf5-1.8.6" [11]="--enable-production" [12]="--disable-sharedlib-rpath" [13]="--libdir=/usr/lib64" [14]="--localstatedir=/var/lib" [15]="--sysconfdir=/etc" [16]="--datadir=/usr/share" [17]="--infodir=/usr/share/info" [18]="--mandir=/usr/share/man" [19]="--host=x86_64-pc-linux-gnu" [20]="--build=x86_64-pc-linux-gnu" [21]="--prefix=/usr") >BASH_CMDS=() >BASH_LINENO=([0]="0") >BASH_SOURCE=([0]="./configure") >BASH_VERSINFO=([0]="4" [1]="2" [2]="8" [3]="2" [4]="release" [5]="x86_64-pc-linux-gnu") >BASH_VERSION='4.2.8(2)-release' >BUILD_PREFIX=/var/data/tmp/portage >CAMERAS='ptp2 canon ptp2 fuji' >CATEGORY=sci-libs >CBUILD=x86_64-pc-linux-gnu >CC=mpicc >CCACHE_DISABLE=1 >CFLAGS='-march=native -O2 -pipe' >CFLAGS_x86=-m32 >CHOST=x86_64-pc-linux-gnu >CHOST_amd64=x86_64-pc-linux-gnu >CHOST_default=x86_64-pc-linux-gnu >CHOST_x86=i686-pc-linux-gnu >COLLECTD_PLUGINS='df interface irq load memory rrdtool swap syslog' >CONF_PREFIX=/usr >CPPFLAGS= >CROSSCOMPILE_OPTS= >CTARGET_default=x86_64-pc-linux-gnu >CVS_RSH=ssh >CXXFLAGS='-march=native -O2 -pipe' >CYGPATH_W=echo >D=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/image/ >DEFAULT_ABI=amd64 >DEFAULT_LIBS= >DEFINED_PHASES=' configure install prepare setup' >DESTTREE=/usr >DIROPTIONS=-m0755 >DIRSTACK=() >DISPLAY=:0 >DISTDIR=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/distdir >DUALCASE=1 >EAPI=2 >EBUILD=/var/data/portage/sci-libs/hdf5/hdf5-1.8.6.ebuild >EBUILD_MASTER_PID=10173 >EBUILD_PHASE=configure >ECHO_C= >ECHO_N=-n >ECHO_T= >ECLASSDIR=/var/data/portage/eclass >ECLASS_DEPTH=0 >EDITOR=/usr/bin/vi >ELIBC=glibc >ELT_APPLIED_PATCHES=' 1.2.0 1.5.6 2.2.6' >EMERGE_FROM=ebuild >EUID=250 >EXEOPTIONS=-m0755 >FC= >FCFLAGS= >FEATURES='assume-digests binpkg-logs collision-protect distlocks fixlafiles fixpackages news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv' >FETCHCOMMAND_SSH='bash -c "x=\${2#ssh://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port=22 ; exec rsync --rsh=\"ssh -p\${port}\" -avP \"\${host}:/\${x#*/}\" \"\$1\"" rsync "${DISTDIR}/${FILE}" "${URI}"' >FFLAGS= >FILESDIR=/var/data/portage/sci-libs/hdf5/files >GCC_SPECS= >GDK_USE_XFT=1 >GPSD_PROTOCOLS='ashtech aivdm earthmate evermore fv18 garmin garmintxt gpsclock itrax mtk3301 nmea ntrip navcom oceanserver oldstyle oncore rtcm104v2 rtcm104v3 sirf superstar2 timing tsip tripmate tnt ubx' >GROUPS=() >GSETTINGS_BACKEND=gconf >GUILE_LOAD_PATH=/usr/share/guile/1.8 >HG=/usr/bin/hg >HOME=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/homedir >HOSTNAME=tiger >HOSTTYPE=x86_64 >IFS=' >' >INFINALITY_FT_AUTOFIT_ADJUST_HEIGHTS=true >INFINALITY_FT_AUTOFIT_EMBOLDEN_LIGHT=true >INFINALITY_FT_AUTOFIT_STEM_SNAP_LIGHT=true >INFINALITY_FT_AUTO_AUTOHINT=true >INFINALITY_FT_EMBOLDEN_MAINTAIN_WIDTH=true >INFINALITY_FT_ENHANCED_EMBOLDEN=true >INFINALITY_FT_STEM_ALIGNMENT_TYPE=medium >INHERITED='toolchain-funcs portability multilib libtool autotools eutils' >INPUT_DEVICES='keyboard mouse evdev evdev synaptics wacom joystick' >INSDESTTREE= >INSOPTIONS=-m0644 >INSTALL='/usr/bin/install -c' >INSTALL_DATA='${INSTALL} -m 644' >INSTALL_PROGRAM='${INSTALL}' >INSTALL_SCRIPT='${INSTALL}' >INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' >JAVAC=/etc/java-config-2/current-system-vm/bin/javac >JAVACC_HOME=/usr/share/javacc/ >JAVA_HOME=/etc/java-config-2/current-system-vm >JDK_HOME=/etc/java-config-2/current-system-vm >KERNEL=linux >KERNEL_ABI=amd64 >KEYWORDS='~alpha ~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86' >KV=2.6.38-gentoo-r4 >LANG=uk_UA.UTF-8 >LANGUAGE=C >LCD_DEVICES= >LC_ALL=C >LC_COLLATE=C >LC_MESSAGES=C >LC_NUMERIC=C >LDFLAGS='-Wl,-O1 -Wl,--as-needed' >LDFLAGS_x86='-m elf_i386' >LESS='-R -M --shift 5' >LESSOPEN='|lesspipe.sh %s' >LIBBLURAY_CP=/usr/share/libbluray/lib/libbluray.jar >LIBDIR_amd64=lib64 >LIBDIR_amd64_fbsd=lib64 >LIBDIR_default=lib >LIBDIR_ppc=lib32 >LIBDIR_ppc64=lib64 >LIBDIR_s390=lib32 >LIBDIR_s390x=lib64 >LIBDIR_sparc32=lib32 >LIBDIR_sparc64=lib64 >LIBDIR_x86=lib32 >LIBDIR_x86_fbsd=lib32 >LIBGL_DRIVERS_PATH=/usr/lib64/dri:/usr/lib32/dri >LIBOBJS= >LIBOPTIONS=-m0644 >LICENSE=NCSA-HDF >LINENO=3810 >LINGUAS=' en eo de ru uk' >LOGNAME=root >LS_COLORS='rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.pdf=00;32:*.ps=00;32:*.txt=00;32:*.patch=00;32:*.diff=00;32:*.log=00;32:*.tex=00;32:*.doc=00;32:*.aac=00;36:*.au=00;36:*.flac=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.axa=00;36:*.oga=00;36:*.spx=00;36:*.xspf=00;36:' >MACHTYPE=x86_64-pc-linux-gnu >MAINT='#' >MAINTAINER_MODE_FALSE= >MAINTAINER_MODE_TRUE='#' >MAKEFLAGS= >MAKEINFO='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/missing --run makeinfo' >MAKEOPTS=-j4 >MFLAGS= >MISSING='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/missing' >MKDIR_P='/bin/mkdir -p' >MOPREFIX=hdf5 >MULTILIB_ABIS='amd64 x86' >MULTILIB_STRICT_DENY='64-bit.*shared object' >MULTILIB_STRICT_DIRS='/lib32 /lib /usr/lib32 /usr/lib /usr/kde/*/lib32 /usr/kde/*/lib /usr/qt/*/lib32 /usr/qt/*/lib /usr/X11R6/lib32 /usr/X11R6/lib' >MULTILIB_STRICT_EXEMPT='(perl5|gcc|gcc-lib|binutils|eclipse-3|debug|portage|udev)' >NETBEANS='apisupport cnd groovy gsf harness ide identity j2ee java mobility nb php profiler soa visualweb webcommon websvccommon xml' >OPENGL_PROFILE=ati >OPTERR=1 >OPTIND=1 >OSTYPE=linux-gnu >P=hdf5-1.8.6 >PACKAGE=hdf5 >PACKAGE_BUGREPORT=help@hdfgroup.org >PACKAGE_NAME=HDF5 >PACKAGE_STRING='HDF5 1.8.6' >PACKAGE_TARNAME=hdf5 >PACKAGE_URL= >PACKAGE_VERSION=1.8.6 >PAGER=/usr/bin/less >PATH=/usr/lib64/portage/bin/ebuild-helpers:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.2 >PATH_SEPARATOR=: >PF=hdf5-1.8.6 >PHP_TARGETS= >PIPESTATUS=([0]="0") >PKGDIR=/var/data/packages >PKGUSE='-cxx -fortran mpi szip' >PKG_CONFIG_PATH=/usr/lib64/pkgconfig >PKG_LOGDIR=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp/logging >PKG_TMPDIR=/var/data/tmp/portage/._unmerge_ >PM_EBUILD_HOOK_DIR=/etc/portage/env >PN=hdf5 >PORTAGE_ACTUAL_DISTDIR=/var/data/distfiles >PORTAGE_ARCHLIST='ppc sparc64-freebsd ppc-openbsd x86-openbsd ppc64 x86-winnt x86-fbsd ppc-aix alpha arm x86-freebsd s390 amd64 arm-linux x86-macos x64-openbsd ia64-hpux hppa x86-netbsd x86-cygwin amd64-linux ia64-linux x86 sparc-solaris x64-freebsd sparc64-solaris x86-linux x64-macos sparc m68k-mint ia64 mips ppc-macos x86-interix hppa-hpux amd64-fbsd x64-solaris mips-irix m68k sh x86-solaris sparc-fbsd' >PORTAGE_BASHRC=/etc/portage/bashrc >PORTAGE_BIN_PATH=/usr/lib64/portage/bin >PORTAGE_BUILDDIR=/var/data/tmp/portage/sci-libs/hdf5-1.8.6 >PORTAGE_BZIP2_COMMAND=bzip2 >PORTAGE_COLORMAP='GOOD=$'\''[32;01m'\'' >WARN=$'\''[33;01m'\'' >BAD=$'\''[31;01m'\'' >HILITE=$'\''[36m'\'' >BRACKET=$'\''[34;01m'\''' >PORTAGE_COMPRESS_EXCLUDE_SUFFIXES='css gif htm[l]? jp[e]?g js pdf png' >PORTAGE_CONFIGROOT=/ >PORTAGE_DEBUG=0 >PORTAGE_DEPCACHEDIR=/var/cache/edb/dep >PORTAGE_FEATURES='assume-digests binpkg-logs collision-protect distlocks fixlafiles fixpackages news parallel-fetch preserve-libs protect-owned sandbox sfperms strict unknown-features-warn unmerge-logs unmerge-orphans userfetch userpriv' >PORTAGE_GID=250 >PORTAGE_INST_GID=0 >PORTAGE_INST_UID=0 >PORTAGE_IPC_DAEMON=1 >PORTAGE_IUSE='^(3dfx|adabas|alpha|alsa\_cards\_aoa|alsa\_cards\_aoa\-fabric\-layout|alsa\_cards\_aoa\-onyx|alsa\_cards\_aoa\-soundbus|alsa\_cards\_aoa\-soundbus\-i2s|alsa\_cards\_aoa\-tas|alsa\_cards\_aoa\-toonie|alsa\_cards\_armaaci|alsa\_cards\_at91\-soc|alsa\_cards\_at91\-soc\-eti\-b1\-wm8731|alsa\_cards\_au1x00|alsa\_cards\_cs5535audio|alsa\_cards\_harmony|alsa\_cards\_powermac|alsa\_cards\_pxa2xx\-i2sound|alsa\_cards\_pxa2xx\-soc|alsa\_cards\_pxa2xx\-soc\-corgi|alsa\_cards\_pxa2xx\-soc\-poodle|alsa\_cards\_pxa2xx\-soc\-spitz|alsa\_cards\_pxa2xx\-soc\-tosa|alsa\_cards\_sa11xx\-uda1341ts|alsa\_cards\_sun\-amd7930|alsa\_cards\_sun\-cs4231|alsa\_cards\_sun\-dbri|altivec|amd64|amd64\-fbsd|amd64\-linux|aqua|arm|arm\-linux|asm|ayatana|birdstep|bootstrap|build|capslib|cmucl|consolekit|coreaudio|crosscompile\_opts\_.*|cxx|dbmaker|debug|drac|elibc\_AIX|elibc\_Darwin|elibc\_DragonFly|elibc\_FreeBSD|elibc\_HPUX|elibc\_IRIX|elibc\_Interix|elibc\_NetBSD|elibc\_OpenBSD|elibc\_SunOS|elibc\_.*|elibc\_glibc|elibc\_mintlib|elibc\_uclibc|empress|empress\-bcs|esoob|examples|fdftk|filepro|firebird|fixed\-point|fortran|frontbase|gamess|gcc64|gluon|gulm|hal|hppa|hppa\-hpux|ia64|ia64\-hpux|ia64\-linux|ibm|informix|ingres|introspection|kdeenablefinal|kdeprefix|kernel\_AIX|kernel\_Darwin|kernel\_FreeBSD|kernel\_HPUX|kernel\_IRIX|kernel\_Interix|kernel\_NetBSD|kernel\_OpenBSD|kernel\_SunOS|kernel\_.*|kernel\_freemint|kernel\_linux|kqueue|lcd\_devices\_svga|m68k|m68k\-mint|macbook|mips|mips\-irix|mpi|multilib|n32|n64|neon|osp|pam\_console|pbbuttonsd|pfpro|php\_targets\_php5\-4|policykit|ppc|ppc64|ppc\-aix|ppc\-macos|ppc\-openbsd|ppcsha1|prefix|ps3|psyco|pvm|real|ruby\_targets\_ruby19|s390|selinux|sh|solid|sparc|sparc64\-freebsd|sparc64\-solaris|sparc\-fbsd|sparc\-solaris|svga|sybase|sybase\-ct|szip|tcc|test|threads|uclibc|ultra1|userland\_BSD|userland\_GNU|userland\_.*|video\_cards\_geode|video\_cards\_i740|video\_cards\_impact|video\_cards\_newport|video\_cards\_nsc|video\_cards\_omapfb|video\_cards\_sunbw2|video\_cards\_suncg14|video\_cards\_suncg3|video\_cards\_suncg6|video\_cards\_sunffb|video\_cards\_sunleo|video\_cards\_suntcx|video\_cards\_voodoo|video\_cards\_xgi|vidix|vis|win32codecs|x64\-freebsd|x64\-macos|x64\-openbsd|x64\-solaris|x86|x86\-cygwin|x86\-fbsd|x86\-freebsd|x86\-interix|x86\-linux|x86\-macos|x86\-netbsd|x86\-openbsd|x86\-solaris|x86\-winnt|yellownet|zlib)$' >PORTAGE_LOG_FILE=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp/build.log >PORTAGE_PYM_PATH=/usr/lib64/portage/pym >PORTAGE_PYTHON=/usr/bin/python2.7 >PORTAGE_REPO_NAME=gentoo >PORTAGE_RESTRICT= >PORTAGE_SANDBOX_COMPAT_LEVEL=22 >PORTAGE_SIGPIPE_STATUS=141 >PORTAGE_TMPDIR=/var/data/tmp >PORTAGE_VERBOSE=1 >PORTAGE_WORKDIR_MODE=0700 >PORTDIR=/var/data/portage >PORTDIR_OVERLAY= >POSIXLY_CORRECT=y >PPID=10173 >PR=r0 >PRELINK_PATH_MASK=/usr/lib64/libfreebl3.so:/usr/lib64/libnssdbm3.so:/usr/lib64/libsoftokn3.so >PROFILE_ONLY_VARIABLES='ARCH ELIBC KERNEL USERLAND' >PROFILE_PATHS='/var/data/portage/profiles/base >/var/data/portage/profiles/default/linux >/var/data/portage/profiles/arch/base >/var/data/portage/profiles/features/multilib >/var/data/portage/profiles/features/multilib/lib32 >/var/data/portage/profiles/arch/amd64 >/var/data/portage/profiles/default/linux/amd64 >/var/data/portage/profiles/releases >/var/data/portage/profiles/releases/10.0 >/var/data/portage/profiles/default/linux/amd64/10.0 >/var/data/portage/profiles/targets/desktop >/var/data/portage/profiles/default/linux/amd64/10.0/desktop >/var/data/portage/profiles/targets/desktop >/var/data/portage/profiles/targets/desktop/kde >/var/data/portage/profiles/default/linux/amd64/10.0/desktop/kde' >PROPERTIES= >PROVIDE= >PS1='$ ' >PS2='> ' >PS4='+ ' >PV=1.8.6 >PVR=1.8.6 >PWD=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6 >PYTHONDONTWRITEBYTECODE=1 >PYTHONPATH=/usr/lib64/root >QT_PLUGIN_PATH='///usr/lib64/kde4/plugins/:${QT_PLUGIN_PATH}' >RDEPEND='mpi? ( virtual/mpi[romio] ) > szip? ( >=sci-libs/szip-2.1 ) > zlib? ( sys-libs/zlib ) ' >RESTRICT= >RESUMECOMMAND_SSH='bash -c "x=\${2#ssh://} ; host=\${x%%/*} ; port=\${host##*:} ; host=\${host%:*} ; [[ \${host} = \${port} ]] && port=22 ; exec rsync --rsh=\"ssh -p\${port}\" -avP \"\${host}:/\${x#*/}\" \"\$1\"" rsync "${DISTDIR}/${FILE}" "${URI}"' >ROOT=/ >ROOTPATH=/opt/bin:/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.2 >RUBYOPT=-rauto_gem >RUBY_TARGETS= >S=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6 >SANDBOX_DENY= >SANDBOX_ON=1 >SANDBOX_PREDICT= >SANDBOX_READ=/:/var/data/tmp >SANDBOX_WRITE=/var/data/tmp >SCHEME_LIBRARY_PATH=/usr/share/slib/ >SET_MAKE= >SHELL=/bin/sh >SHELLOPTS=braceexpand:hashall:interactive-comments:posix >SHLVL=3 >SLOT=0 >STAGE1_USE='multilib nptl nptlonly unicode' >SYMLINK_LIB=yes >T=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp >TEMP=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp >TERM=xterm >TMP=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp >TMPDIR=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp >UID=250 >USE='amd64 consolekit elibc_glibc kernel_linux mpi multilib policykit szip threads userland_GNU zlib' >USERLAND=GNU >USE_EXPAND='ALSA_CARDS ALSA_PCM_PLUGINS APACHE2_MODULES APACHE2_MPMS CAMERAS COLLECTD_PLUGINS CROSSCOMPILE_OPTS DRACUT_MODULES DVB_CARDS ELIBC FCDSL_CARDS FOO2ZJS_DEVICES FRITZCAPI_CARDS GPSD_PROTOCOLS INPUT_DEVICES KERNEL LCD_DEVICES LINGUAS LIRC_DEVICES MISDN_CARDS NETBEANS_MODULES NGINX_MODULES_HTTP NGINX_MODULES_MAIL PHP_TARGETS QEMU_SOFTMMU_TARGETS QEMU_USER_TARGETS RUBY_TARGETS SANE_BACKENDS USERLAND VIDEO_CARDS XFCE_PLUGINS XTABLES_ADDONS' >USE_MAINTAINER_MODE=no >VBOX_APP_HOME=/usr/lib64/virtualbox >VERSION=1.8.6 >VIDEO_CARDS= >WANT_AUTOCONF=2.5 >WANT_AUTOMAKE=1.11 >WORKDIR=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/work >XARGS='xargs -r' >XAUTHORITY=/root/.xauthQRS2rR >XDG_CONFIG_DIRS=/etc/xdg >XDG_DATA_DIRS=/usr/local/share:/usr/share >XERCESC_NLS_HOME=/usr/share/xerces-c/msg >XTABLES_ADDONS='quota2 psd pknock lscan length2 ipv4options ipset ipp2p iface geoip fuzzy condition tee tarpit sysrq steal rawnat logmark ipmark dhcpmac delude chaos account' >_='checking shell variables initial values... ' >_E_DOCDESTTREE_= >_E_EXEDESTTREE_= >ac_abs_confdir=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6 >ac_arg='CXXFLAGS=-march=native -O2 -pipe' >ac_aux_dir=bin >ac_build_alias=x86_64-pc-linux-gnu >ac_cache_corrupted=false >ac_clean_files= >ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' >ac_compiler_gnu= >ac_confdir=. >ac_config_commands=' default-1' >ac_config_guess='/bin/sh bin/config.guess' >ac_config_headers=' src/H5config.h' >ac_config_libobj_dir=. >ac_config_sub='/bin/sh bin/config.sub' >ac_configure='/bin/sh bin/configure' >ac_configure_args=' '\''--prefix=/usr'\'' '\''--build=x86_64-pc-linux-gnu'\'' '\''--host=x86_64-pc-linux-gnu'\'' '\''--mandir=/usr/share/man'\'' '\''--infodir=/usr/share/info'\'' '\''--datadir=/usr/share'\'' '\''--sysconfdir=/etc'\'' '\''--localstatedir=/var/lib'\'' '\''--libdir=/usr/lib64'\'' '\''--disable-sharedlib-rpath'\'' '\''--enable-production'\'' '\''--docdir=/usr/share/doc/hdf5-1.8.6'\'' '\''--enable-deprecated-symbols'\'' '\''--enable-shared'\'' '\''--disable-debug'\'' '\''--disable-fortran'\'' '\''--enable-parallel'\'' '\''--with-szlib'\'' '\''--with-pthread'\'' '\''--with-zlib'\'' '\''--disable-threadsafe'\'' '\''--disable-cxx'\'' '\''build_alias=x86_64-pc-linux-gnu'\'' '\''host_alias=x86_64-pc-linux-gnu'\'' '\''CC=mpicc'\'' '\''CFLAGS=-march=native -O2 -pipe'\'' '\''LDFLAGS=-Wl,-O1 -Wl,--as-needed'\'' '\''FCFLAGS='\'' '\''CXXFLAGS=-march=native -O2 -pipe'\''' >ac_cpp='$CPP $CPPFLAGS' >ac_cv_build=x86_64-pc-linux-gnu >ac_cv_env_CCC_set= >ac_cv_env_CCC_value= >ac_cv_env_CC_set=set >ac_cv_env_CC_value=mpicc >ac_cv_env_CFLAGS_set=set >ac_cv_env_CFLAGS_value='-march=native -O2 -pipe' >ac_cv_env_CPPFLAGS_set= >ac_cv_env_CPPFLAGS_value= >ac_cv_env_CPP_set= >ac_cv_env_CPP_value= >ac_cv_env_CXXCPP_set= >ac_cv_env_CXXCPP_value= >ac_cv_env_CXXFLAGS_set=set >ac_cv_env_CXXFLAGS_value='-march=native -O2 -pipe' >ac_cv_env_CXX_set= >ac_cv_env_CXX_value= >ac_cv_env_FCFLAGS_set=set >ac_cv_env_FCFLAGS_value= >ac_cv_env_FC_set= >ac_cv_env_FC_value= >ac_cv_env_LDFLAGS_set=set >ac_cv_env_LDFLAGS_value='-Wl,-O1 -Wl,--as-needed' >ac_cv_env_LIBS_set= >ac_cv_env_LIBS_value= >ac_cv_env_build_alias_set=set >ac_cv_env_build_alias_value=x86_64-pc-linux-gnu >ac_cv_env_host_alias_set=set >ac_cv_env_host_alias_value=x86_64-pc-linux-gnu >ac_cv_env_target_alias_set= >ac_cv_env_target_alias_value= >ac_cv_host=x86_64-pc-linux-gnu >ac_cv_path_install='/usr/bin/install -c' >ac_cv_path_mkdir=/bin/mkdir >ac_cv_prog_AWK=gawk >ac_cv_prog_make_make_set=yes >ac_dashdash= >ac_default_prefix=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/hdf5 >ac_dir=bin >ac_env_CCC_set= >ac_env_CCC_value= >ac_env_CC_set=set >ac_env_CC_value=mpicc >ac_env_CFLAGS_set=set >ac_env_CFLAGS_value='-march=native -O2 -pipe' >ac_env_CPPFLAGS_set= >ac_env_CPPFLAGS_value= >ac_env_CPP_set= >ac_env_CPP_value= >ac_env_CXXCPP_set= >ac_env_CXXCPP_value= >ac_env_CXXFLAGS_set=set >ac_env_CXXFLAGS_value='-march=native -O2 -pipe' >ac_env_CXX_set= >ac_env_CXX_value= >ac_env_FCFLAGS_set=set >ac_env_FCFLAGS_value= >ac_env_FC_set= >ac_env_FC_value= >ac_env_LDFLAGS_set=set >ac_env_LDFLAGS_value='-Wl,-O1 -Wl,--as-needed' >ac_env_LIBS_set= >ac_env_LIBS_value= >ac_env_build_alias_set=set >ac_env_build_alias_value=x86_64-pc-linux-gnu >ac_env_host_alias_set=set >ac_env_host_alias_value=x86_64-pc-linux-gnu >ac_env_target_alias_set= >ac_env_target_alias_value= >ac_exec_ext= >ac_ext=c >ac_hostname=tiger >ac_includes_default='#include <stdio.h> >#ifdef HAVE_SYS_TYPES_H ># include <sys/types.h> >#endif >#ifdef HAVE_SYS_STAT_H ># include <sys/stat.h> >#endif >#ifdef STDC_HEADERS ># include <stdlib.h> ># include <stddef.h> >#else ># ifdef HAVE_STDLIB_H ># include <stdlib.h> ># endif >#endif >#ifdef HAVE_STRING_H ># if !defined STDC_HEADERS && defined HAVE_MEMORY_H ># include <memory.h> ># endif ># include <string.h> >#endif >#ifdef HAVE_STRINGS_H ># include <strings.h> >#endif >#ifdef HAVE_INTTYPES_H ># include <inttypes.h> >#endif >#ifdef HAVE_STDINT_H ># include <stdint.h> >#endif >#ifdef HAVE_UNISTD_H ># include <unistd.h> >#endif' >ac_init_help= >ac_init_version=false >ac_install_sh='bin/install-sh -c' >ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' >ac_ls_di='1060867 .' >ac_make=make >ac_msg='sources are in ., but `cd .'\'' does not work' >ac_must_keep_next=false >ac_new_set= >ac_new_val= >ac_old_set= >ac_old_val= >ac_optarg=yes >ac_option=--disable-cxx >ac_pass=2 >ac_precious_vars='build_alias >host_alias >target_alias >CC >CFLAGS >LDFLAGS >LIBS >CPPFLAGS >FC >FCFLAGS >CXX >CXXFLAGS >CCC >CXXCPP >CPP' >ac_prev= >ac_prog=gawk >ac_pwd=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6 >ac_pwd_ls_di='1060867 .' >ac_save_IFS=' >' >ac_script='s/[\\$]/&&/g;s/;s,x,x,$//' >ac_signal=0 >ac_site_file=/usr/etc/config.site >ac_site_file1=/usr/share/config.site >ac_site_file2=/usr/etc/config.site >ac_srcdir_defaulted=yes >ac_subst_files= >ac_subst_vars='am__EXEEXT_FALSE >am__EXEEXT_TRUE >LTLIBOBJS >LIBOBJS >SETX >SEARCH >BUILD_HDF5_HL_CONDITIONAL_FALSE >BUILD_HDF5_HL_CONDITIONAL_TRUE >BUILD_FORTRAN_CONDITIONAL_FALSE >BUILD_FORTRAN_CONDITIONAL_TRUE >BUILD_PARALLEL_CONDITIONAL_FALSE >BUILD_PARALLEL_CONDITIONAL_TRUE >BUILD_CXX_CONDITIONAL_FALSE >BUILD_CXX_CONDITIONAL_TRUE >STRICT_FORMAT_CHECKS >DEFAULT_API_VERSION >DEPRECATED_SYMBOLS >BUILD_ALL_CONDITIONAL_FALSE >BUILD_ALL_CONDITIONAL_TRUE >HL_FOR >HL >DYNAMIC_DIRS >ROOT >CXX_VERSION >FC_VERSION >CC_VERSION >WORDS_BIGENDIAN >BYTESEX >CONFIG_MODE >CONFIG_USER >CONFIG_DATE >H5_VERSION >DIRECT_VFD_CONDITIONAL_FALSE >DIRECT_VFD_CONDITIONAL_TRUE >USE_FILTER_SCALEOFFSET >USE_FILTER_NBIT >USE_FILTER_FLETCHER32 >USE_FILTER_SHUFFLE >FILTERS >MPI_GET_SIZE >ADD_PARALLEL_FILES >USINGMEMCHECKER >CLEARFILEBUF >INSTRUMENT_LIBRARY >TRACE_API >DEBUG_PKG >H5_LONE_COLON >PTHREAD >BUILD_SZIP_CONDITIONAL_FALSE >BUILD_SZIP_CONDITIONAL_TRUE >LL_PATH >USE_FILTER_SZIP >USE_FILTER_DEFLATE >AM_MAKEFLAGS >LT_STATIC_EXEC >CPP >OTOOL64 >OTOOL >LIPO >NMEDIT >DSYMUTIL >MANIFEST_TOOL >RANLIB >ac_ct_AR >DLLTOOL >OBJDUMP >LN_S >NM >ac_ct_DUMPBIN >DUMPBIN >LD >FGREP >EGREP >GREP >SED >LIBTOOL >CXX_SHARED_CONDITIONAL_FALSE >CXX_SHARED_CONDITIONAL_TRUE >FORTRAN_SHARED_CONDITIONAL_FALSE >FORTRAN_SHARED_CONDITIONAL_TRUE >TESTPARALLEL >RUNPARALLEL >RUNSERIAL >PARALLEL >TIME >TR >AR >PERL >CXXCPP >am__fastdepCXX_FALSE >am__fastdepCXX_TRUE >CXXDEPMODE >ac_ct_CXX >CXXFLAGS >FORTRAN_DEFAULT_REALisDBLE_F_FALSE >FORTRAN_DEFAULT_REALisDBLE_F_TRUE >FORTRAN_HAVE_SIZEOF_FALSE >FORTRAN_HAVE_SIZEOF_TRUE >FCLIBS >F9XMODEXT >F9XMODFLAG >FSEARCH_DIRS >F9XSUFFIXFLAG >FCFLAGS_f90 >ac_ct_FC >FCFLAGS >OBJECT_NAMELEN_DEFAULT_F >SIZE_T >HID_T >HSSIZE_T >HSIZE_T >HADDR_T >R_INTEGER >R_LARGE >HDF5_INTERFACES >am__fastdepCC_FALSE >am__fastdepCC_TRUE >CCDEPMODE >AMDEPBACKSLASH >AMDEP_FALSE >AMDEP_TRUE >am__quote >am__include >DEPDIR >OBJEXT >EXEEXT >ac_ct_CC >LDFLAGS >CFLAGS >CC >PACKED_BITS >UNAME_INFO >enable_static >enable_shared >STATIC_SHARED >THREADSAFE >DIRECT_VFD >HAVE_DMALLOC >CODESTACK >INSTRUMENT >LARGEFILE >GPFS >HDF5_HL >CXX >HDF_CXX >FC >HDF_FORTRAN >STATIC_EXEC >MPE >EXTERNAL_FILTERS >AM_LDFLAGS >AM_CPPFLAGS >AM_CXXFLAGS >AM_FCFLAGS >AM_CFLAGS >H5_CXXFLAGS >H5_FCFLAGS >H5_CPPFLAGS >H5_CFLAGS >CPPFLAGS >host_os >host_vendor >host_cpu >host >build_os >build_vendor >build_cpu >build >MAINT >MAINTAINER_MODE_FALSE >MAINTAINER_MODE_TRUE >am__untar >am__tar >AMTAR >am__leading_dot >SET_MAKE >AWK >mkdir_p >MKDIR_P >INSTALL_STRIP_PROGRAM >STRIP >install_sh >MAKEINFO >AUTOHEADER >AUTOMAKE >AUTOCONF >ACLOCAL >VERSION >PACKAGE >CYGPATH_W >am__isrc >INSTALL_DATA >INSTALL_SCRIPT >INSTALL_PROGRAM >target_alias >host_alias >build_alias >LIBS >ECHO_T >ECHO_N >ECHO_C >DEFS >mandir >localedir >libdir >psdir >pdfdir >dvidir >htmldir >infodir >docdir >oldincludedir >includedir >localstatedir >sharedstatedir >sysconfdir >datadir >datarootdir >libexecdir >sbindir >bindir >program_transform_name >prefix >exec_prefix >PACKAGE_URL >PACKAGE_BUGREPORT >PACKAGE_STRING >PACKAGE_VERSION >PACKAGE_TARNAME >PACKAGE_NAME >PATH_SEPARATOR >SHELL' >ac_tool_prefix=x86_64-pc-linux-gnu- >ac_unique_file=src/H5.c >ac_unrecognized_opts= >ac_unrecognized_sep= >ac_user_opts=' >enable_option_checking >enable_maintainer_mode >enable_dependency_tracking >enable_fortran >enable_cxx >enable_shared >enable_static >with_pic >enable_fast_install >with_gnu_ld >with_sysroot >enable_libtool_lock >enable_static_exec >enable_sharedlib_rpath >enable_production >enable_largefile >enable_linux_lfs >with_fnord >with_dmalloc >with_zlib >with_szlib >with_pthread >enable_threadsafe >enable_gpfs >enable_debug >enable_codestack >enable_metadata_trace_file >enable_trace >enable_instrument >enable_clear_file_buffers >enable_using_memchecker >enable_parallel >with_mpe >enable_mpi_size >enable_filters >with_default_vfd >enable_direct_vfd >enable_dconv_exception >enable_dconv_accuracy >enable_hl >enable_build_all >enable_deprecated_symbols >with_default_api_version >enable_strict_format_checks >enable_embedded_libinfo >enable_h5dump_packed_bits >' >ac_useropt=cxx >ac_useropt_orig=cxx >ac_val=/usr/share/man >ac_var=CPP >ac_word=gawk >am__api_version=1.11 >am__leading_dot=. >am__tar='${AMTAR} chof - "$$tardir"' >am__untar='${AMTAR} xf -' >am_aux_dir=/var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin >am_lf=' >' >am_missing_run='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/missing --run ' >as_basename=basename >as_bourne_compatible='if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then : > emulate sh > NULLCMD=: > # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which > # is contrary to our usage. Disable this feature. > alias -g '\''${1+"$@"}'\''='\''"$@"'\'' > setopt NO_GLOB_SUBST >else > case `(set -o) 2>/dev/null` in #( > *posix*) : > set -o posix ;; #( > *) : > ;; >esac >fi >' >as_cr_LETTERS=ABCDEFGHIJKLMNOPQRSTUVWXYZ >as_cr_Letters=abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ >as_cr_alnum=abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789 >as_cr_digits=0123456789 >as_cr_letters=abcdefghijklmnopqrstuvwxyz >as_dir=/usr/bin >as_dirname=dirname >as_echo='printf %s\n' >as_echo_n='printf %s' >as_executable_p='test -x' >as_expr=expr >as_have_required=yes >as_lineno_1=441 >as_lineno_1a=441 >as_lineno_2=442 >as_lineno_2a=442 >as_ln_s='ln -s' >as_me=configure >as_mkdir_p='mkdir -p "$as_dir"' >as_myself=./configure >as_nl=' >' >as_required='as_fn_return () { (exit $1); } >as_fn_success () { as_fn_return 0; } >as_fn_failure () { as_fn_return 1; } >as_fn_ret_success () { return 0; } >as_fn_ret_failure () { return 1; } > >exitcode=0 >as_fn_success || { exitcode=1; echo as_fn_success failed.; } >as_fn_failure && { exitcode=1; echo as_fn_failure succeeded.; } >as_fn_ret_success || { exitcode=1; echo as_fn_ret_success failed.; } >as_fn_ret_failure && { exitcode=1; echo as_fn_ret_failure succeeded.; } >if ( set x; as_fn_ret_success y && test x = "$1" ); then : > >else > exitcode=1; echo positional parameters were not saved. >fi >test x$exitcode = x0 || exit 1' >as_save_IFS=' >' >as_suggested=' as_lineno_1=174 as_lineno_1a=$LINENO > as_lineno_2=175 as_lineno_2a=$LINENO > eval '\''test "x$as_lineno_1'\''$as_run'\''" != "x$as_lineno_2'\''$as_run'\''" && > test "x`expr $as_lineno_1'\''$as_run'\'' + 1`" = "x$as_lineno_2'\''$as_run'\''"'\'' || exit 1 > > test -n "${ZSH_VERSION+set}${BASH_VERSION+set}" || ( > ECHO='\''\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'\'' > ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO > ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO$ECHO > PATH=/empty FPATH=/empty; export PATH FPATH > test "X`printf %s $ECHO`" = "X$ECHO" \ > || test "X`print -r -- $ECHO`" = "X$ECHO" ) || exit 1 >test $(( 1 + 1 )) = 2 || exit 1' >as_test_x='test -x' >as_tr_cpp='eval sed '\''y%*abcdefghijklmnopqrstuvwxyz%PABCDEFGHIJKLMNOPQRSTUVWXYZ%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\''' >as_tr_sh='eval sed '\''y%*+%pp%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\''' >as_unset=as_fn_unset >as_var=MAILPATH >bindir='${exec_prefix}/bin' >build=x86_64-pc-linux-gnu >build_alias=x86_64-pc-linux-gnu >build_cpu=x86_64 >build_os=linux-gnu >build_vendor=pc >cache_file=/dev/null >cross_compiling=no >datadir=/usr/share >datarootdir='${prefix}/share' >docdir=/usr/share/doc/hdf5-1.8.6 >dvidir='${docdir}' >enable_cxx=no >enable_debug=no >enable_deprecated_symbols=yes >enable_fortran=no >enable_parallel=yes >enable_production=yes >enable_shared=yes >enable_sharedlib_rpath=no >enable_threadsafe=no >exec_prefix=NONE >host=x86_64-pc-linux-gnu >host_alias=x86_64-pc-linux-gnu >host_cpu=x86_64 >host_os=linux-gnu >host_vendor=pc >htmldir='${docdir}' >includedir='${prefix}/include' >infodir=/usr/share/info >install_sh='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/install-sh' >libdir=/usr/lib64 >libexecdir='${exec_prefix}/libexec' >localedir='${datarootdir}/locale' >localstatedir=/var/lib >mandir=/usr/share/man >mkdir_p='/bin/mkdir -p' >no_create= >no_recursion= >oldincludedir=/usr/include >pdfdir='${docdir}' >prefix=/usr >program_prefix=NONE >program_suffix=NONE >program_transform_name=s,x,x, >psdir='${docdir}' >saved_user_CFLAGS='-march=native -O2 -pipe' >saved_user_CPPFLAGS= >saved_user_CXXFLAGS='-march=native -O2 -pipe' >saved_user_FCFLAGS= >saved_user_LDFLAGS='-Wl,-O1 -Wl,--as-needed' >sbindir='${exec_prefix}/sbin' >sharedstatedir='${prefix}/com' >silent= >site= >srcdir=. >subdirs= >sysconfdir=/etc >target= >verbose= >with_pthread=yes >with_szlib=yes >with_zlib=yes >x_includes=NONE >x_libraries=NONE >configure:3813: result: done >configure:3840: checking if basename works >configure:3846: result: yes >configure:3850: checking if xargs works >configure:3856: result: yes >configure:3860: checking for cached host >configure:3867: result: none >configure:3922: checking for config x86_64-pc-linux-gnu >configure:3930: result: no >configure:3922: checking for config x86_64-pc-linux-gnu >configure:3930: result: no >configure:3922: checking for config pc-linux-gnu >configure:3930: result: no >configure:3922: checking for config pc-linux-gnu >configure:3930: result: no >configure:3922: checking for config x86_64-linux-gnu >configure:3930: result: no >configure:3922: checking for config x86_64-linux-gnu >configure:3930: result: no >configure:3922: checking for config x86_64-pc >configure:3930: result: no >configure:3922: checking for config linux-gnu >configure:3926: result: found >configure:3941: checking for config ./config/site-specific/host-tiger >configure:3949: result: no >configure:3974: checking for x86_64-pc-linux-gnu-gcc >configure:4001: result: mpicc >configure:4270: checking for C compiler version >configure:4279: mpicc --version >&5 >NullMPI 0.7 >configure:4290: $? = 0 >configure:4279: mpicc -v >&5 >NullMPI 0.7 >configure:4290: $? = 0 >configure:4279: mpicc -V >&5 >/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.2/x86_64-pc-linux-gnu-gcc: error trying to exec '/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.2/x86_64-pc-linux-gnu-gcc--L/usr/lib64': execvp: No such file or directory >configure:4290: $? = 0 >configure:4279: mpicc -qversion >&5 >x86_64-pc-linux-gnu-gcc: unrecognized option '-qversion' >/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.2/../../../../lib64/crt1.o: In function `_start': >(.text+0x20): undefined reference to `main' >collect2: ld returned 1 exit status >configure:4290: $? = 1 >configure:4310: checking whether the C compiler works >configure:4332: mpicc -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c >&5 >configure:4336: $? = 0 >configure:4384: result: yes >configure:4387: checking for C compiler default output file name >configure:4389: result: a.out >configure:4395: checking for suffix of executables >configure:4402: mpicc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c >&5 >configure:4406: $? = 0 >configure:4428: result: >configure:4450: checking whether we are cross compiling >configure:4458: mpicc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c >&5 >configure:4462: $? = 0 >configure:4469: ./conftest >configure:4473: $? = 0 >configure:4488: result: no >configure:4493: checking for suffix of object files >configure:4515: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:4519: $? = 0 >configure:4540: result: o >configure:4544: checking whether we are using the GNU C compiler >configure:4563: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:4563: $? = 0 >configure:4572: result: yes >configure:4581: checking whether mpicc accepts -g >configure:4601: mpicc -c -g conftest.c >&5 >configure:4601: $? = 0 >configure:4642: result: yes >configure:4659: checking for mpicc option to accept ISO C89 >configure:4723: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:4723: $? = 0 >configure:4736: result: none needed >configure:4767: checking for style of include used by make >configure:4795: result: GNU >configure:4820: checking dependency style of mpicc >configure:4930: result: gcc3 >configure:4948: checking if Fortran interface enabled >configure:6407: checking for C++ compiler version >configure:6416: g++ --version >&5 >g++ (Gentoo 4.5.2 p1.0, pie-0.4.5) 4.5.2 >Copyright (C) 2010 Free Software Foundation, Inc. >This is free software; see the source for copying conditions. There is NO >warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. > >configure:6427: $? = 0 >configure:6416: g++ -v >&5 >Using built-in specs. >COLLECT_GCC=/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.2/g++ >COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-pc-linux-gnu/4.5.2/lto-wrapper >Target: x86_64-pc-linux-gnu >Configured with: /var/data/tmp/portage/sys-devel/gcc-4.5.2/work/gcc-4.5.2/configure --prefix=/usr --bindir=/usr/x86_64-pc-linux-gnu/gcc-bin/4.5.2 --includedir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.2/include --datadir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.2 --mandir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.2/man --infodir=/usr/share/gcc-data/x86_64-pc-linux-gnu/4.5.2/info --with-gxx-include-dir=/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.2/include/g++-v4 --host=x86_64-pc-linux-gnu --build=x86_64-pc-linux-gnu --disable-altivec --disable-fixed-point --with-ppl --with-cloog --disable-lto --enable-nls --without-included-gettext --with-system-zlib --disable-werror --enable-secureplt --enable-multilib --enable-libmudflap --disable-libssp --enable-libgomp --enable-cld --with-python-dir=/share/gcc-data/x86_64-pc-linux-gnu/4.5.2/python --enable-checking=release --disable-libgcj --enable-languages=c,c++,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu --with-bugurl=http://bugs.gentoo.org/ --with-pkgversion='Gentoo 4.5.2 p1.0, pie-0.4.5' >Thread model: posix >gcc version 4.5.2 (Gentoo 4.5.2 p1.0, pie-0.4.5) >configure:6427: $? = 0 >configure:6416: g++ -V >&5 >g++: '-V' option must have argument >configure:6427: $? = 1 >configure:6416: g++ -qversion >&5 >g++: unrecognized option '-qversion' >g++: no input files >configure:6427: $? = 1 >configure:6431: checking whether we are using the GNU C++ compiler >configure:6458: g++ -c -march=native -O2 -pipe conftest.cpp >&5 >configure:6458: $? = 0 >configure:6467: result: yes >configure:6476: checking whether g++ accepts -g >configure:6504: g++ -c -g conftest.cpp >&5 >configure:6504: $? = 0 >configure:6561: result: yes >configure:6586: checking dependency style of g++ >configure:6696: result: gcc3 >configure:6716: checking how to run the C++ preprocessor >configure:6743: g++ -E conftest.cpp >configure:6743: $? = 0 >configure:6757: g++ -E conftest.cpp >conftest.cpp:11:28: fatal error: ac_nonexistent.h: No such file or directory >compilation terminated. >configure:6757: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:6782: result: g++ -E >configure:6802: g++ -E conftest.cpp >configure:6802: $? = 0 >configure:6816: g++ -E conftest.cpp >conftest.cpp:11:28: fatal error: ac_nonexistent.h: No such file or directory >compilation terminated. >configure:6816: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:6844: checking if c++ interface enabled >configure:7105: checking for perl >configure:7121: found /usr/bin/perl >configure:7132: result: perl >configure:7151: checking for ar >configure:7167: found /usr/bin/ar >configure:7178: result: ar >configure:7195: checking whether make sets $(MAKE) >configure:7217: result: yes >configure:7232: checking for tr >configure:7250: found /usr/bin/tr >configure:7262: result: /usr/bin/tr >configure:7277: checking if srcdir= and time commands work together >configure:7285: result: yes >configure:7302: checking for mpiexec >configure:7317: result: /usr/bin/mpiexec >configure:7536: checking how to print strings >configure:7563: result: printf >configure:7584: checking for a sed that does not truncate output >configure:7648: result: /bin/sed >configure:7666: checking for grep that handles long lines and -e >configure:7724: result: /bin/grep >configure:7729: checking for egrep >configure:7791: result: /bin/grep -E >configure:7796: checking for fgrep >configure:7858: result: /bin/grep -F >configure:7893: checking for ld used by mpicc >configure:7960: result: /usr/x86_64-pc-linux-gnu/bin/ld >configure:7967: checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld >configure:7982: result: yes >configure:7994: checking for BSD- or MS-compatible name lister (nm) >configure:8043: result: /usr/bin/nm -B >configure:8173: checking the name lister (/usr/bin/nm -B) interface >configure:8180: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:8183: /usr/bin/nm -B "conftest.o" >configure:8186: output >0000000000000000 B some_variable >configure:8193: result: BSD nm >configure:8196: checking whether ln -s works >configure:8200: result: yes >configure:8208: checking the maximum length of command line arguments >configure:8333: result: 1572864 >configure:8350: checking whether the shell understands some XSI constructs >configure:8360: result: yes >configure:8364: checking whether the shell understands "+=" >configure:8370: result: yes >configure:8405: checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format >configure:8445: result: func_convert_file_noop >configure:8452: checking how to convert x86_64-pc-linux-gnu file names to toolchain format >configure:8472: result: func_convert_file_noop >configure:8479: checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files >configure:8486: result: -r >configure:8520: checking for x86_64-pc-linux-gnu-objdump >configure:8536: found /usr/bin/x86_64-pc-linux-gnu-objdump >configure:8547: result: x86_64-pc-linux-gnu-objdump >configure:8619: checking how to recognize dependent libraries >configure:8821: result: pass_all >configure:8866: checking for x86_64-pc-linux-gnu-dlltool >configure:8896: result: no >configure:8906: checking for dlltool >configure:8936: result: no >configure:8966: checking how to associate runtime and link libraries >configure:8993: result: printf %s\n >configure:9009: checking for x86_64-pc-linux-gnu-ar >configure:9036: result: ar >configure:9117: checking for archiver @FILE support >configure:9142: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:9142: $? = 0 >configure:9145: ar cru libconftest.a @conftest.lst >&5 >configure:9148: $? = 0 >configure:9153: ar cru libconftest.a @conftest.lst >&5 >ar: conftest.o: No such file or directory >configure:9156: $? = 1 >configure:9168: result: @ >configure:9186: checking for x86_64-pc-linux-gnu-strip >configure:9202: found /usr/bin/x86_64-pc-linux-gnu-strip >configure:9213: result: x86_64-pc-linux-gnu-strip >configure:9285: checking for x86_64-pc-linux-gnu-ranlib >configure:9301: found /usr/bin/x86_64-pc-linux-gnu-ranlib >configure:9312: result: x86_64-pc-linux-gnu-ranlib >configure:9454: checking command to parse /usr/bin/nm -B output from mpicc object >configure:9573: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:9576: $? = 0 >configure:9580: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm >configure:9583: $? = 0 >configure:9649: mpicc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c conftstm.o >&5 >configure:9652: $? = 0 >configure:9690: result: ok >configure:9727: checking for sysroot >configure:9757: result: no >configure:9834: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:9837: $? = 0 >configure:9968: checking for x86_64-pc-linux-gnu-mt >configure:9998: result: no >configure:10008: checking for mt >configure:10038: result: no >configure:10058: checking if : is a manifest tool >configure:10064: : '-?' >configure:10072: result: no >configure:10712: checking how to run the C preprocessor >configure:10743: mpicc -E conftest.c >configure:10743: $? = 0 >configure:10757: mpicc -E conftest.c >conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory >compilation terminated. >configure:10757: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:10782: result: mpicc -E >configure:10802: mpicc -E conftest.c >configure:10802: $? = 0 >configure:10816: mpicc -E conftest.c >conftest.c:11:28: fatal error: ac_nonexistent.h: No such file or directory >compilation terminated. >configure:10816: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| /* end confdefs.h. */ >| #include <ac_nonexistent.h> >configure:10845: checking for ANSI C header files >configure:10873: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:10873: $? = 0 >configure:10946: mpicc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c >&5 >configure:10946: $? = 0 >configure:10946: ./conftest >configure:10946: $? = 0 >configure:10957: result: yes >configure:10970: checking for sys/types.h >configure:10970: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:10970: $? = 0 >configure:10970: result: yes >configure:10970: checking for sys/stat.h >configure:10970: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:10970: $? = 0 >configure:10970: result: yes >configure:10970: checking for stdlib.h >configure:10970: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:10970: $? = 0 >configure:10970: result: yes >configure:10970: checking for string.h >configure:10970: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:10970: $? = 0 >configure:10970: result: yes >configure:10970: checking for memory.h >configure:10970: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:10970: $? = 0 >configure:10970: result: yes >configure:10970: checking for strings.h >configure:10970: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:10970: $? = 0 >configure:10970: result: yes >configure:10970: checking for inttypes.h >configure:10970: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:10970: $? = 0 >configure:10970: result: yes >configure:10970: checking for stdint.h >configure:10970: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:10970: $? = 0 >configure:10970: result: yes >configure:10970: checking for unistd.h >configure:10970: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:10970: $? = 0 >configure:10970: result: yes >configure:10984: checking for dlfcn.h >configure:10984: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:10984: $? = 0 >configure:10984: result: yes >configure:11180: checking for objdir >configure:11195: result: .libs >configure:11462: checking if mpicc supports -fno-rtti -fno-exceptions >configure:11480: mpicc -c -march=native -O2 -pipe -fno-rtti -fno-exceptions conftest.c >&5 >cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C >configure:11484: $? = 0 >configure:11497: result: no >configure:11807: checking for mpicc option to produce PIC >configure:11814: result: -fPIC -DPIC >configure:11822: checking if mpicc PIC flag -fPIC -DPIC works >configure:11840: mpicc -c -march=native -O2 -pipe -fPIC -DPIC -DPIC conftest.c >&5 >configure:11844: $? = 0 >configure:11857: result: yes >configure:11886: checking if mpicc static flag -static works >configure:11914: result: no >configure:11929: checking if mpicc supports -c -o file.o >configure:11950: mpicc -c -march=native -O2 -pipe -o out/conftest2.o conftest.c >&5 >configure:11954: $? = 0 >configure:11976: result: yes >configure:11984: checking if mpicc supports -c -o file.o >configure:12031: result: yes >configure:12064: checking whether the mpicc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries >configure:13238: result: yes >configure:13275: checking whether -lc should be explicitly linked in >configure:13283: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:13286: $? = 0 >configure:13301: mpicc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 >configure:13304: $? = 1 >configure:13318: result: yes >configure:13483: checking dynamic linker characteristics >configure:14018: mpicc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed -Wl,-rpath -Wl,/foo conftest.c >&5 >configure:14018: $? = 0 >configure:14240: result: GNU/Linux ld.so >configure:14347: checking how to hardcode library paths into programs >configure:14372: result: immediate >configure:14474: checking for shl_load >configure:14474: mpicc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c >&5 >/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp/ccWIihDq.o: In function `main': >conftest.c:(.text+0x7): undefined reference to `shl_load' >collect2: ld returned 1 exit status >configure:14474: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| /* end confdefs.h. */ >| /* Define shl_load to an innocuous variant, in case <limits.h> declares shl_load. >| For example, HP-UX 11i <limits.h> declares gettimeofday. */ >| #define shl_load innocuous_shl_load >| >| /* System header to define __stub macros and hopefully few prototypes, >| which can conflict with char shl_load (); below. >| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since >| <limits.h> exists even on freestanding compilers. */ >| >| #ifdef __STDC__ >| # include <limits.h> >| #else >| # include <assert.h> >| #endif >| >| #undef shl_load >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char shl_load (); >| /* The GNU C library defines this for functions which it implements >| to always fail with ENOSYS. Some functions are actually named >| something starting with __ and the normal name is an alias. */ >| #if defined __stub_shl_load || defined __stub___shl_load >| choke me >| #endif >| >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| return shl_load (); >| ; >| return 0; >| } >configure:14474: result: no >configure:14478: checking for shl_load in -ldld >configure:14511: mpicc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c -ldld >&5 >/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.2/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -ldld >collect2: ld returned 1 exit status >configure:14511: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| /* end confdefs.h. */ >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char shl_load (); >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| return shl_load (); >| ; >| return 0; >| } >configure:14520: result: no >configure:14525: checking for dlopen >configure:14525: mpicc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c >&5 >/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp/ccgF8jkB.o: In function `main': >conftest.c:(.text+0x7): undefined reference to `dlopen' >collect2: ld returned 1 exit status >configure:14525: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| /* end confdefs.h. */ >| /* Define dlopen to an innocuous variant, in case <limits.h> declares dlopen. >| For example, HP-UX 11i <limits.h> declares gettimeofday. */ >| #define dlopen innocuous_dlopen >| >| /* System header to define __stub macros and hopefully few prototypes, >| which can conflict with char dlopen (); below. >| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since >| <limits.h> exists even on freestanding compilers. */ >| >| #ifdef __STDC__ >| # include <limits.h> >| #else >| # include <assert.h> >| #endif >| >| #undef dlopen >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char dlopen (); >| /* The GNU C library defines this for functions which it implements >| to always fail with ENOSYS. Some functions are actually named >| something starting with __ and the normal name is an alias. */ >| #if defined __stub_dlopen || defined __stub___dlopen >| choke me >| #endif >| >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| return dlopen (); >| ; >| return 0; >| } >configure:14525: result: no >configure:14529: checking for dlopen in -ldl >configure:14562: mpicc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c -ldl >&5 >configure:14562: $? = 0 >configure:14571: result: yes >configure:14706: checking whether a program can dlopen itself >configure:14786: mpicc -o conftest -march=native -O2 -pipe -DHAVE_DLFCN_H -Wl,-O1 -Wl,--as-needed -Wl,--export-dynamic conftest.c -ldl >&5 >configure:14789: $? = 0 >configure:14807: result: yes >configure:14812: checking whether a statically linked program can dlopen itself >configure:14892: mpicc -o conftest -march=native -O2 -pipe -DHAVE_DLFCN_H -Wl,-O1 -Wl,--as-needed -Wl,--export-dynamic conftest.c -ldl >&5 >configure:14895: $? = 0 >configure:14913: result: yes >configure:14952: checking whether stripping libraries is possible >configure:14957: result: yes >configure:14992: checking if libtool supports shared libraries >configure:14994: result: yes >configure:14997: checking whether to build shared libraries >configure:15018: result: yes >configure:15021: checking whether to build static libraries >configure:15025: result: yes >configure:21175: checking if we should install only statically linked executables >configure:21202: checking if -Wl,-rpath should be used to link shared libs in nondefault directories >configure:21212: result: no >configure:21229: checking make >configure:21232: checking how make searches directories >configure:21249: result: VPATH=DIR1 DIR2 ... >configure:21305: checking whether make will build with undefined variables >configure:21314: result: yes >configure:21325: checking for production mode >configure:21336: result: production >configure:21372: checking for ceil in -lm >configure:21405: mpicc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >conftest.c:30:6: warning: conflicting types for built-in function 'ceil' >configure:21405: $? = 0 >configure:21414: result: yes >configure:21536: checking for ANSI C header files >configure:21648: result: yes >configure:21656: checking whether time.h and sys/time.h may both be included >configure:21684: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:21684: $? = 0 >configure:21691: result: yes >configure:21702: checking for difftime >configure:21702: mpicc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:21702: $? = 0 >configure:21702: result: yes >configure:21713: checking for gettimeofday >configure:21713: mpicc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:21713: $? = 0 >configure:21713: result: yes >configure:21728: checking sys/resource.h usability >configure:21728: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:21728: $? = 0 >configure:21728: result: yes >configure:21728: checking sys/resource.h presence >configure:21728: mpicc -E conftest.c >configure:21728: $? = 0 >configure:21728: result: yes >configure:21728: checking for sys/resource.h >configure:21728: result: yes >configure:21728: checking sys/time.h usability >configure:21728: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:21728: $? = 0 >configure:21728: result: yes >configure:21728: checking sys/time.h presence >configure:21728: mpicc -E conftest.c >configure:21728: $? = 0 >configure:21728: result: yes >configure:21728: checking for sys/time.h >configure:21728: result: yes >configure:21728: checking for unistd.h >configure:21728: result: yes >configure:21728: checking sys/ioctl.h usability >configure:21728: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:21728: $? = 0 >configure:21728: result: yes >configure:21728: checking sys/ioctl.h presence >configure:21728: mpicc -E conftest.c >configure:21728: $? = 0 >configure:21728: result: yes >configure:21728: checking for sys/ioctl.h >configure:21728: result: yes >configure:21728: checking for sys/stat.h >configure:21728: result: yes >configure:21741: checking sys/socket.h usability >configure:21741: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:21741: $? = 0 >configure:21741: result: yes >configure:21741: checking sys/socket.h presence >configure:21741: mpicc -E conftest.c >configure:21741: $? = 0 >configure:21741: result: yes >configure:21741: checking for sys/socket.h >configure:21741: result: yes >configure:21741: checking for sys/types.h >configure:21741: result: yes >configure:21754: checking stddef.h usability >configure:21754: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:21754: $? = 0 >configure:21754: result: yes >configure:21754: checking stddef.h presence >configure:21754: mpicc -E conftest.c >configure:21754: $? = 0 >configure:21754: result: yes >configure:21754: checking for stddef.h >configure:21754: result: yes >configure:21754: checking setjmp.h usability >configure:21754: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:21754: $? = 0 >configure:21754: result: yes >configure:21754: checking setjmp.h presence >configure:21754: mpicc -E conftest.c >configure:21754: $? = 0 >configure:21754: result: yes >configure:21754: checking for setjmp.h >configure:21754: result: yes >configure:21754: checking features.h usability >configure:21754: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:21754: $? = 0 >configure:21754: result: yes >configure:21754: checking features.h presence >configure:21754: mpicc -E conftest.c >configure:21754: $? = 0 >configure:21754: result: yes >configure:21754: checking for features.h >configure:21754: result: yes >configure:21766: checking for stdint.h >configure:21766: result: yes >configure:21797: checking io.h usability >configure:21797: mpicc -c -march=native -O2 -pipe conftest.c >&5 >conftest.c:72:16: fatal error: io.h: No such file or directory >compilation terminated. >configure:21797: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| /* end confdefs.h. */ >| #include <stdio.h> >| #ifdef HAVE_SYS_TYPES_H >| # include <sys/types.h> >| #endif >| #ifdef HAVE_SYS_STAT_H >| # include <sys/stat.h> >| #endif >| #ifdef STDC_HEADERS >| # include <stdlib.h> >| # include <stddef.h> >| #else >| # ifdef HAVE_STDLIB_H >| # include <stdlib.h> >| # endif >| #endif >| #ifdef HAVE_STRING_H >| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H >| # include <memory.h> >| # endif >| # include <string.h> >| #endif >| #ifdef HAVE_STRINGS_H >| # include <strings.h> >| #endif >| #ifdef HAVE_INTTYPES_H >| # include <inttypes.h> >| #endif >| #ifdef HAVE_STDINT_H >| # include <stdint.h> >| #endif >| #ifdef HAVE_UNISTD_H >| # include <unistd.h> >| #endif >| #include <io.h> >configure:21797: result: no >configure:21797: checking io.h presence >configure:21797: mpicc -E conftest.c >conftest.c:39:16: fatal error: io.h: No such file or directory >compilation terminated. >configure:21797: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| /* end confdefs.h. */ >| #include <io.h> >configure:21797: result: no >configure:21797: checking for io.h >configure:21797: result: no >configure:21797: checking winsock.h usability >configure:21797: mpicc -c -march=native -O2 -pipe conftest.c >&5 >conftest.c:72:21: fatal error: winsock.h: No such file or directory >compilation terminated. >configure:21797: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| /* end confdefs.h. */ >| #include <stdio.h> >| #ifdef HAVE_SYS_TYPES_H >| # include <sys/types.h> >| #endif >| #ifdef HAVE_SYS_STAT_H >| # include <sys/stat.h> >| #endif >| #ifdef STDC_HEADERS >| # include <stdlib.h> >| # include <stddef.h> >| #else >| # ifdef HAVE_STDLIB_H >| # include <stdlib.h> >| # endif >| #endif >| #ifdef HAVE_STRING_H >| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H >| # include <memory.h> >| # endif >| # include <string.h> >| #endif >| #ifdef HAVE_STRINGS_H >| # include <strings.h> >| #endif >| #ifdef HAVE_INTTYPES_H >| # include <inttypes.h> >| #endif >| #ifdef HAVE_STDINT_H >| # include <stdint.h> >| #endif >| #ifdef HAVE_UNISTD_H >| # include <unistd.h> >| #endif >| #include <winsock.h> >configure:21797: result: no >configure:21797: checking winsock.h presence >configure:21797: mpicc -E conftest.c >conftest.c:39:21: fatal error: winsock.h: No such file or directory >compilation terminated. >configure:21797: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| /* end confdefs.h. */ >| #include <winsock.h> >configure:21797: result: no >configure:21797: checking for winsock.h >configure:21797: result: no >configure:21797: checking sys/timeb.h usability >configure:21797: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:21797: $? = 0 >configure:21797: result: yes >configure:21797: checking sys/timeb.h presence >configure:21797: mpicc -E conftest.c >configure:21797: $? = 0 >configure:21797: result: yes >configure:21797: checking for sys/timeb.h >configure:21797: result: yes >configure:21853: checking if configure should try to set up large file support >configure:21879: result: yes >configure:21882: checking for special C compiler options needed for large files >configure:21935: result: no >configure:21942: checking for _FILE_OFFSET_BITS value needed for large files >configure:21975: mpicc -c -march=native -O2 -pipe conftest.c >&5 >configure:21975: $? = 0 >configure:22015: result: no >configure:22116: checking if large (64-bit) files are supported on this system. >configure:22147: mpicc -o conftest -march=native -O2 -pipe -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22147: $? = 0 >configure:22147: ./conftest >configure:22147: $? = 0 >configure:22160: result: yes >configure:22209: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:22209: $? = 0 >configure:22213: checking for lseek64 >configure:22213: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22213: $? = 0 >configure:22213: result: yes >configure:22213: checking for fseeko64 >configure:22213: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22213: $? = 0 >configure:22213: result: yes >configure:22213: checking for ftello64 >configure:22213: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22213: $? = 0 >configure:22213: result: yes >configure:22213: checking for ftruncate64 >configure:22213: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22213: $? = 0 >configure:22213: result: yes >configure:22230: checking for fseeko >configure:22230: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22230: $? = 0 >configure:22230: result: yes >configure:22230: checking for ftello >configure:22230: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22230: $? = 0 >configure:22230: result: yes >configure:22260: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:22260: $? = 0 >configure:22264: checking for stat64 >configure:22264: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22264: $? = 0 >configure:22264: result: yes >configure:22264: checking for fstat64 >configure:22264: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22264: $? = 0 >configure:22264: result: yes >configure:22279: checking for off_t >configure:22279: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:22279: $? = 0 >configure:22279: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >conftest.c: In function 'main': >conftest.c:92:20: error: expected expression before ')' token >configure:22279: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| /* end confdefs.h. */ >| #include <stdio.h> >| #ifdef HAVE_SYS_TYPES_H >| # include <sys/types.h> >| #endif >| #ifdef HAVE_SYS_STAT_H >| # include <sys/stat.h> >| #endif >| #ifdef STDC_HEADERS >| # include <stdlib.h> >| # include <stddef.h> >| #else >| # ifdef HAVE_STDLIB_H >| # include <stdlib.h> >| # endif >| #endif >| #ifdef HAVE_STRING_H >| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H >| # include <memory.h> >| # endif >| # include <string.h> >| #endif >| #ifdef HAVE_STRINGS_H >| # include <strings.h> >| #endif >| #ifdef HAVE_INTTYPES_H >| # include <inttypes.h> >| #endif >| #ifdef HAVE_STDINT_H >| # include <stdint.h> >| #endif >| #ifdef HAVE_UNISTD_H >| # include <unistd.h> >| #endif >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| if (sizeof ((off_t))) >| return 0; >| ; >| return 0; >| } >configure:22279: result: yes >configure:22290: checking for size_t >configure:22290: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:22290: $? = 0 >configure:22290: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >conftest.c: In function 'main': >conftest.c:92:21: error: expected expression before ')' token >configure:22290: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| /* end confdefs.h. */ >| #include <stdio.h> >| #ifdef HAVE_SYS_TYPES_H >| # include <sys/types.h> >| #endif >| #ifdef HAVE_SYS_STAT_H >| # include <sys/stat.h> >| #endif >| #ifdef STDC_HEADERS >| # include <stdlib.h> >| # include <stddef.h> >| #else >| # ifdef HAVE_STDLIB_H >| # include <stdlib.h> >| # endif >| #endif >| #ifdef HAVE_STRING_H >| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H >| # include <memory.h> >| # endif >| # include <string.h> >| #endif >| #ifdef HAVE_STRINGS_H >| # include <strings.h> >| #endif >| #ifdef HAVE_INTTYPES_H >| # include <inttypes.h> >| #endif >| #ifdef HAVE_STDINT_H >| # include <stdint.h> >| #endif >| #ifdef HAVE_UNISTD_H >| # include <unistd.h> >| #endif >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| if (sizeof ((size_t))) >| return 0; >| ; >| return 0; >| } >configure:22290: result: yes >configure:22301: checking for ssize_t >configure:22301: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:22301: $? = 0 >configure:22301: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >conftest.c: In function 'main': >conftest.c:92:22: error: expected expression before ')' token >configure:22301: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| /* end confdefs.h. */ >| #include <stdio.h> >| #ifdef HAVE_SYS_TYPES_H >| # include <sys/types.h> >| #endif >| #ifdef HAVE_SYS_STAT_H >| # include <sys/stat.h> >| #endif >| #ifdef STDC_HEADERS >| # include <stdlib.h> >| # include <stddef.h> >| #else >| # ifdef HAVE_STDLIB_H >| # include <stdlib.h> >| # endif >| #endif >| #ifdef HAVE_STRING_H >| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H >| # include <memory.h> >| # endif >| # include <string.h> >| #endif >| #ifdef HAVE_STRINGS_H >| # include <strings.h> >| #endif >| #ifdef HAVE_INTTYPES_H >| # include <inttypes.h> >| #endif >| #ifdef HAVE_STDINT_H >| # include <stdint.h> >| #endif >| #ifdef HAVE_UNISTD_H >| # include <unistd.h> >| #endif >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| if (sizeof ((ssize_t))) >| return 0; >| ; >| return 0; >| } >configure:22301: result: yes >configure:22312: checking for ptrdiff_t >configure:22312: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:22312: $? = 0 >configure:22312: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >conftest.c: In function 'main': >conftest.c:92:24: error: expected expression before ')' token >configure:22312: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| /* end confdefs.h. */ >| #include <stdio.h> >| #ifdef HAVE_SYS_TYPES_H >| # include <sys/types.h> >| #endif >| #ifdef HAVE_SYS_STAT_H >| # include <sys/stat.h> >| #endif >| #ifdef STDC_HEADERS >| # include <stdlib.h> >| # include <stddef.h> >| #else >| # ifdef HAVE_STDLIB_H >| # include <stdlib.h> >| # endif >| #endif >| #ifdef HAVE_STRING_H >| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H >| # include <memory.h> >| # endif >| # include <string.h> >| #endif >| #ifdef HAVE_STRINGS_H >| # include <strings.h> >| #endif >| #ifdef HAVE_INTTYPES_H >| # include <inttypes.h> >| #endif >| #ifdef HAVE_STDINT_H >| # include <stdint.h> >| #endif >| #ifdef HAVE_UNISTD_H >| # include <unistd.h> >| #endif >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| if (sizeof ((ptrdiff_t))) >| return 0; >| ; >| return 0; >| } >configure:22312: result: yes >configure:22323: checking whether byte ordering is bigendian >configure:22338: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >conftest.c:49:13: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'a' >configure:22338: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| /* end confdefs.h. */ >| #ifndef __APPLE_CC__ >| not a universal capable compiler >| #endif >| typedef int dummy; >| >configure:22391: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:22391: $? = 0 >configure:22417: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >conftest.c: In function 'main': >conftest.c:63:4: error: 'not' undeclared (first use in this function) >conftest.c:63:4: note: each undeclared identifier is reported only once for each function it appears in >conftest.c:63:8: error: expected ';' before 'big' >configure:22417: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| /* end confdefs.h. */ >| #include <sys/types.h> >| #include <sys/param.h> >| >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| #if BYTE_ORDER != BIG_ENDIAN >| not big endian >| #endif >| >| ; >| return 0; >| } >configure:22577: result: no >configure:22599: checking size of char >configure:22604: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22604: $? = 0 >configure:22604: ./conftest >configure:22604: $? = 0 >configure:22618: result: 1 >configure:22632: checking size of short >configure:22637: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22637: $? = 0 >configure:22637: ./conftest >configure:22637: $? = 0 >configure:22651: result: 2 >configure:22665: checking size of int >configure:22670: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22670: $? = 0 >configure:22670: ./conftest >configure:22670: $? = 0 >configure:22684: result: 4 >configure:22698: checking size of unsigned >configure:22703: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22703: $? = 0 >configure:22703: ./conftest >configure:22703: $? = 0 >configure:22717: result: 4 >configure:22731: checking size of long >configure:22736: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22736: $? = 0 >configure:22736: ./conftest >configure:22736: $? = 0 >configure:22750: result: 8 >configure:22764: checking size of long long >configure:22769: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22769: $? = 0 >configure:22769: ./conftest >configure:22769: $? = 0 >configure:22783: result: 8 >configure:22797: checking size of __int64 >configure:22802: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >conftest.c: In function 'longval': >conftest.c:87:57: error: '__int64' undeclared (first use in this function) >conftest.c:87:57: note: each undeclared identifier is reported only once for each function it appears in >conftest.c: In function 'ulongval': >conftest.c:88:67: error: '__int64' undeclared (first use in this function) >conftest.c: In function 'main': >conftest.c:106:28: error: '__int64' undeclared (first use in this function) >configure:22802: $? = 1 >configure: program exited with status 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| #define SIZEOF_CHAR 1 >| #define SIZEOF_SHORT 2 >| #define SIZEOF_INT 4 >| #define SIZEOF_UNSIGNED 4 >| #define SIZEOF_LONG 8 >| #define SIZEOF_LONG_LONG 8 >| /* end confdefs.h. */ >| #include <stdio.h> >| #ifdef HAVE_SYS_TYPES_H >| # include <sys/types.h> >| #endif >| #ifdef HAVE_SYS_STAT_H >| # include <sys/stat.h> >| #endif >| #ifdef STDC_HEADERS >| # include <stdlib.h> >| # include <stddef.h> >| #else >| # ifdef HAVE_STDLIB_H >| # include <stdlib.h> >| # endif >| #endif >| #ifdef HAVE_STRING_H >| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H >| # include <memory.h> >| # endif >| # include <string.h> >| #endif >| #ifdef HAVE_STRINGS_H >| # include <strings.h> >| #endif >| #ifdef HAVE_INTTYPES_H >| # include <inttypes.h> >| #endif >| #ifdef HAVE_STDINT_H >| # include <stdint.h> >| #endif >| #ifdef HAVE_UNISTD_H >| # include <unistd.h> >| #endif >| static long int longval () { return (long int) (sizeof (__int64)); } >| static unsigned long int ulongval () { return (long int) (sizeof (__int64)); } >| #include <stdio.h> >| #include <stdlib.h> >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| >| FILE *f = fopen ("conftest.val", "w"); >| if (! f) >| return 1; >| if (((long int) (sizeof (__int64))) < 0) >| { >| long int i = longval (); >| if (i != ((long int) (sizeof (__int64)))) >| return 1; >| fprintf (f, "%ld", i); >| } >| else >| { >| unsigned long int i = ulongval (); >| if (i != ((long int) (sizeof (__int64)))) >| return 1; >| fprintf (f, "%lu", i); >| } >| /* Do not output a trailing newline, as this causes \r\n confusion >| on some platforms. */ >| return ferror (f) || fclose (f) != 0; >| >| ; >| return 0; >| } >configure:22816: result: 0 >configure:22830: checking size of float >configure:22835: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22835: $? = 0 >configure:22835: ./conftest >configure:22835: $? = 0 >configure:22849: result: 4 >configure:22863: checking size of double >configure:22868: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22868: $? = 0 >configure:22868: ./conftest >configure:22868: $? = 0 >configure:22882: result: 8 >configure:22896: checking size of long double >configure:22901: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:22901: $? = 0 >configure:22901: ./conftest >configure:22901: $? = 0 >configure:22915: result: 16 >configure:23026: checking size of int8_t >configure:23031: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23031: $? = 0 >configure:23031: ./conftest >configure:23031: $? = 0 >configure:23045: result: 1 >configure:23059: checking size of uint8_t >configure:23064: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23064: $? = 0 >configure:23064: ./conftest >configure:23064: $? = 0 >configure:23078: result: 1 >configure:23092: checking size of int_least8_t >configure:23097: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23097: $? = 0 >configure:23097: ./conftest >configure:23097: $? = 0 >configure:23111: result: 1 >configure:23125: checking size of uint_least8_t >configure:23130: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23130: $? = 0 >configure:23130: ./conftest >configure:23130: $? = 0 >configure:23144: result: 1 >configure:23158: checking size of int_fast8_t >configure:23163: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23163: $? = 0 >configure:23163: ./conftest >configure:23163: $? = 0 >configure:23177: result: 1 >configure:23191: checking size of uint_fast8_t >configure:23196: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23196: $? = 0 >configure:23196: ./conftest >configure:23196: $? = 0 >configure:23210: result: 1 >configure:23225: checking size of int16_t >configure:23230: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23230: $? = 0 >configure:23230: ./conftest >configure:23230: $? = 0 >configure:23244: result: 2 >configure:23258: checking size of uint16_t >configure:23263: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23263: $? = 0 >configure:23263: ./conftest >configure:23263: $? = 0 >configure:23277: result: 2 >configure:23291: checking size of int_least16_t >configure:23296: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23296: $? = 0 >configure:23296: ./conftest >configure:23296: $? = 0 >configure:23310: result: 2 >configure:23324: checking size of uint_least16_t >configure:23329: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23329: $? = 0 >configure:23329: ./conftest >configure:23329: $? = 0 >configure:23343: result: 2 >configure:23357: checking size of int_fast16_t >configure:23362: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23362: $? = 0 >configure:23362: ./conftest >configure:23362: $? = 0 >configure:23376: result: 8 >configure:23390: checking size of uint_fast16_t >configure:23395: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23395: $? = 0 >configure:23395: ./conftest >configure:23395: $? = 0 >configure:23409: result: 8 >configure:23424: checking size of int32_t >configure:23429: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23429: $? = 0 >configure:23429: ./conftest >configure:23429: $? = 0 >configure:23443: result: 4 >configure:23457: checking size of uint32_t >configure:23462: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23462: $? = 0 >configure:23462: ./conftest >configure:23462: $? = 0 >configure:23476: result: 4 >configure:23490: checking size of int_least32_t >configure:23495: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23495: $? = 0 >configure:23495: ./conftest >configure:23495: $? = 0 >configure:23509: result: 4 >configure:23523: checking size of uint_least32_t >configure:23528: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23528: $? = 0 >configure:23528: ./conftest >configure:23528: $? = 0 >configure:23542: result: 4 >configure:23556: checking size of int_fast32_t >configure:23561: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23561: $? = 0 >configure:23561: ./conftest >configure:23561: $? = 0 >configure:23575: result: 8 >configure:23589: checking size of uint_fast32_t >configure:23594: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23594: $? = 0 >configure:23594: ./conftest >configure:23594: $? = 0 >configure:23608: result: 8 >configure:23623: checking size of int64_t >configure:23628: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23628: $? = 0 >configure:23628: ./conftest >configure:23628: $? = 0 >configure:23642: result: 8 >configure:23656: checking size of uint64_t >configure:23661: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23661: $? = 0 >configure:23661: ./conftest >configure:23661: $? = 0 >configure:23675: result: 8 >configure:23689: checking size of int_least64_t >configure:23694: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23694: $? = 0 >configure:23694: ./conftest >configure:23694: $? = 0 >configure:23708: result: 8 >configure:23722: checking size of uint_least64_t >configure:23727: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23727: $? = 0 >configure:23727: ./conftest >configure:23727: $? = 0 >configure:23741: result: 8 >configure:23755: checking size of int_fast64_t >configure:23760: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23760: $? = 0 >configure:23760: ./conftest >configure:23760: $? = 0 >configure:23774: result: 8 >configure:23788: checking size of uint_fast64_t >configure:23793: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23793: $? = 0 >configure:23793: ./conftest >configure:23793: $? = 0 >configure:23807: result: 8 >configure:23822: checking size of size_t >configure:23827: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23827: $? = 0 >configure:23827: ./conftest >configure:23827: $? = 0 >configure:23841: result: 8 >configure:23855: checking size of ssize_t >configure:23860: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23860: $? = 0 >configure:23860: ./conftest >configure:23860: $? = 0 >configure:23874: result: 8 >configure:23888: checking size of ptrdiff_t >configure:23893: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23893: $? = 0 >configure:23893: ./conftest >configure:23893: $? = 0 >configure:23907: result: 8 >configure:23925: checking size of off_t >configure:23930: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23930: $? = 0 >configure:23930: ./conftest >configure:23930: $? = 0 >configure:23944: result: 8 >configure:23958: checking size of off64_t >configure:23963: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lm >&5 >configure:23963: $? = 0 >configure:23963: ./conftest >configure:23963: $? = 0 >configure:23977: result: 8 >configure:24074: checking if dev_t is scalar >configure:24099: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:24099: $? = 0 >configure:24103: result: yes >configure:24205: checking for dmalloc library >configure:24207: result: suppressed >configure:24339: checking zlib.h usability >configure:24339: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:24339: $? = 0 >configure:24339: result: yes >configure:24339: checking zlib.h presence >configure:24339: mpicc -E -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >configure:24339: $? = 0 >configure:24339: result: yes >configure:24339: checking for zlib.h >configure:24339: result: yes >configure:24349: checking for compress2 in -lz >configure:24382: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lz -lm >&5 >configure:24382: $? = 0 >configure:24391: result: yes >configure:24404: checking for compress2 >configure:24404: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lz -lm >&5 >configure:24404: $? = 0 >configure:24404: result: yes >configure:24568: checking szlib.h usability >configure:24568: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:24568: $? = 0 >configure:24568: result: yes >configure:24568: checking szlib.h presence >configure:24568: mpicc -E -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >configure:24568: $? = 0 >configure:24568: result: yes >configure:24568: checking for szlib.h >configure:24568: result: yes >configure:24578: checking for SZ_BufftoBuffCompress in -lsz >configure:24611: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lsz -lz -lm >&5 >configure:24611: $? = 0 >configure:24620: result: yes >configure:24760: checking for szlib encoder >configure:24795: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lsz -lz -lm >&5 >conftest.c: In function 'main': >conftest.c:103:17: warning: incompatible implicit declaration of built-in function 'exit' >configure:24795: $? = 0 >configure:24795: ./conftest >configure:24795: $? = 0 >configure:24813: result: yes >configure:24945: checking pthread.h usability >configure:24945: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:24945: $? = 0 >configure:24945: result: yes >configure:24945: checking pthread.h presence >configure:24945: mpicc -E -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >configure:24945: $? = 0 >configure:24945: result: yes >configure:24945: checking for pthread.h >configure:24945: result: yes >configure:24955: checking for pthread_create in -lpthread >configure:24988: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:24988: $? = 0 >configure:24997: result: yes >configure:25196: checking for thread safe support >configure:25214: result: no >configure:25260: checking for tm_gmtoff in struct tm >configure:25283: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:25283: $? = 0 >configure:25287: result: yes >configure:25295: checking for __tm_gmtoff in struct tm >configure:25318: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >conftest.c: In function 'main': >conftest.c:114:17: error: 'struct tm' has no member named '__tm_gmtoff' >configure:25318: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| #define SIZEOF_CHAR 1 >| #define SIZEOF_SHORT 2 >| #define SIZEOF_INT 4 >| #define SIZEOF_UNSIGNED 4 >| #define SIZEOF_LONG 8 >| #define SIZEOF_LONG_LONG 8 >| #define SIZEOF___INT64 0 >| #define SIZEOF_FLOAT 4 >| #define SIZEOF_DOUBLE 8 >| #define SIZEOF_LONG_DOUBLE 16 >| #include <sys/types.h> >| #include <stdint.h> >| #define SIZEOF_INT8_T 1 >| #define SIZEOF_UINT8_T 1 >| #define SIZEOF_INT_LEAST8_T 1 >| #define SIZEOF_UINT_LEAST8_T 1 >| #define SIZEOF_INT_FAST8_T 1 >| #define SIZEOF_UINT_FAST8_T 1 >| #define SIZEOF_INT16_T 2 >| #define SIZEOF_UINT16_T 2 >| #define SIZEOF_INT_LEAST16_T 2 >| #define SIZEOF_UINT_LEAST16_T 2 >| #define SIZEOF_INT_FAST16_T 8 >| #define SIZEOF_UINT_FAST16_T 8 >| #define SIZEOF_INT32_T 4 >| #define SIZEOF_UINT32_T 4 >| #define SIZEOF_INT_LEAST32_T 4 >| #define SIZEOF_UINT_LEAST32_T 4 >| #define SIZEOF_INT_FAST32_T 8 >| #define SIZEOF_UINT_FAST32_T 8 >| #define SIZEOF_INT64_T 8 >| #define SIZEOF_UINT64_T 8 >| #define SIZEOF_INT_LEAST64_T 8 >| #define SIZEOF_UINT_LEAST64_T 8 >| #define SIZEOF_INT_FAST64_T 8 >| #define SIZEOF_UINT_FAST64_T 8 >| #define SIZEOF_SIZE_T 8 >| #define SIZEOF_SSIZE_T 8 >| #define SIZEOF_PTRDIFF_T 8 >| #include <sys/types.h> /*for off_t definition*/ >| #define SIZEOF_OFF_T 8 >| #define SIZEOF_OFF64_T 8 >| #define DEV_T_IS_SCALAR 1 >| #define HAVE_ZLIB_H 1 >| #define HAVE_LIBZ 1 >| #define HAVE_FILTER_DEFLATE 1 >| #define HAVE_SZLIB_H 1 >| #define HAVE_LIBSZ 1 >| #define HAVE_FILTER_SZIP 1 >| #define HAVE_PTHREAD_H 1 >| #define HAVE_LIBPTHREAD 1 >| #define HAVE_TM_GMTOFF 1 >| /* end confdefs.h. */ >| >| #include <sys/time.h> >| #include <time.h> >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| struct tm tm; tm.__tm_gmtoff=0; >| ; >| return 0; >| } >configure:25325: result: no >configure:25330: checking for global timezone variable >configure:25361: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >conftest.c: In function 'main': >conftest.c:114:1: error: 'timezone' undeclared (first use in this function) >conftest.c:114:1: note: each undeclared identifier is reported only once for each function it appears in >configure:25361: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| #define SIZEOF_CHAR 1 >| #define SIZEOF_SHORT 2 >| #define SIZEOF_INT 4 >| #define SIZEOF_UNSIGNED 4 >| #define SIZEOF_LONG 8 >| #define SIZEOF_LONG_LONG 8 >| #define SIZEOF___INT64 0 >| #define SIZEOF_FLOAT 4 >| #define SIZEOF_DOUBLE 8 >| #define SIZEOF_LONG_DOUBLE 16 >| #include <sys/types.h> >| #include <stdint.h> >| #define SIZEOF_INT8_T 1 >| #define SIZEOF_UINT8_T 1 >| #define SIZEOF_INT_LEAST8_T 1 >| #define SIZEOF_UINT_LEAST8_T 1 >| #define SIZEOF_INT_FAST8_T 1 >| #define SIZEOF_UINT_FAST8_T 1 >| #define SIZEOF_INT16_T 2 >| #define SIZEOF_UINT16_T 2 >| #define SIZEOF_INT_LEAST16_T 2 >| #define SIZEOF_UINT_LEAST16_T 2 >| #define SIZEOF_INT_FAST16_T 8 >| #define SIZEOF_UINT_FAST16_T 8 >| #define SIZEOF_INT32_T 4 >| #define SIZEOF_UINT32_T 4 >| #define SIZEOF_INT_LEAST32_T 4 >| #define SIZEOF_UINT_LEAST32_T 4 >| #define SIZEOF_INT_FAST32_T 8 >| #define SIZEOF_UINT_FAST32_T 8 >| #define SIZEOF_INT64_T 8 >| #define SIZEOF_UINT64_T 8 >| #define SIZEOF_INT_LEAST64_T 8 >| #define SIZEOF_UINT_LEAST64_T 8 >| #define SIZEOF_INT_FAST64_T 8 >| #define SIZEOF_UINT_FAST64_T 8 >| #define SIZEOF_SIZE_T 8 >| #define SIZEOF_SSIZE_T 8 >| #define SIZEOF_PTRDIFF_T 8 >| #include <sys/types.h> /*for off_t definition*/ >| #define SIZEOF_OFF_T 8 >| #define SIZEOF_OFF64_T 8 >| #define DEV_T_IS_SCALAR 1 >| #define HAVE_ZLIB_H 1 >| #define HAVE_LIBZ 1 >| #define HAVE_FILTER_DEFLATE 1 >| #define HAVE_SZLIB_H 1 >| #define HAVE_LIBSZ 1 >| #define HAVE_FILTER_SZIP 1 >| #define HAVE_PTHREAD_H 1 >| #define HAVE_LIBPTHREAD 1 >| #define HAVE_TM_GMTOFF 1 >| /* end confdefs.h. */ >| >| #include <sys/time.h> >| #include <time.h> >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| timezone=0; >| ; >| return 0; >| } >configure:25368: result: no >configure:25376: checking whether struct tm is in sys/time.h or time.h >configure:25404: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:25404: $? = 0 >configure:25411: result: time.h >configure:25419: checking for struct tm.tm_zone >configure:25419: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:25419: $? = 0 >configure:25419: result: yes >configure:25494: checking for struct timezone >configure:25518: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:25518: $? = 0 >configure:25523: result: yes >configure:25533: checking whether gettimeofday() gives timezone >configure:25562: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >conftest.c: In function 'main': >conftest.c:115:17: warning: incompatible implicit declaration of built-in function 'exit' >configure:25562: $? = 0 >configure:25562: ./conftest >configure:25562: $? = 0 >configure:25575: result: yes >configure:25586: checking for st_blocks in struct stat >configure:25608: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:25608: $? = 0 >configure:25612: result: yes >configure:25623: checking for _getvideoconfig >configure:25623: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp/cc39Gpky.o: In function `main': >conftest.c:(.text+0x7): undefined reference to `_getvideoconfig' >collect2: ld returned 1 exit status >configure:25623: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| #define SIZEOF_CHAR 1 >| #define SIZEOF_SHORT 2 >| #define SIZEOF_INT 4 >| #define SIZEOF_UNSIGNED 4 >| #define SIZEOF_LONG 8 >| #define SIZEOF_LONG_LONG 8 >| #define SIZEOF___INT64 0 >| #define SIZEOF_FLOAT 4 >| #define SIZEOF_DOUBLE 8 >| #define SIZEOF_LONG_DOUBLE 16 >| #include <sys/types.h> >| #include <stdint.h> >| #define SIZEOF_INT8_T 1 >| #define SIZEOF_UINT8_T 1 >| #define SIZEOF_INT_LEAST8_T 1 >| #define SIZEOF_UINT_LEAST8_T 1 >| #define SIZEOF_INT_FAST8_T 1 >| #define SIZEOF_UINT_FAST8_T 1 >| #define SIZEOF_INT16_T 2 >| #define SIZEOF_UINT16_T 2 >| #define SIZEOF_INT_LEAST16_T 2 >| #define SIZEOF_UINT_LEAST16_T 2 >| #define SIZEOF_INT_FAST16_T 8 >| #define SIZEOF_UINT_FAST16_T 8 >| #define SIZEOF_INT32_T 4 >| #define SIZEOF_UINT32_T 4 >| #define SIZEOF_INT_LEAST32_T 4 >| #define SIZEOF_UINT_LEAST32_T 4 >| #define SIZEOF_INT_FAST32_T 8 >| #define SIZEOF_UINT_FAST32_T 8 >| #define SIZEOF_INT64_T 8 >| #define SIZEOF_UINT64_T 8 >| #define SIZEOF_INT_LEAST64_T 8 >| #define SIZEOF_UINT_LEAST64_T 8 >| #define SIZEOF_INT_FAST64_T 8 >| #define SIZEOF_UINT_FAST64_T 8 >| #define SIZEOF_SIZE_T 8 >| #define SIZEOF_SSIZE_T 8 >| #define SIZEOF_PTRDIFF_T 8 >| #include <sys/types.h> /*for off_t definition*/ >| #define SIZEOF_OFF_T 8 >| #define SIZEOF_OFF64_T 8 >| #define DEV_T_IS_SCALAR 1 >| #define HAVE_ZLIB_H 1 >| #define HAVE_LIBZ 1 >| #define HAVE_FILTER_DEFLATE 1 >| #define HAVE_SZLIB_H 1 >| #define HAVE_LIBSZ 1 >| #define HAVE_FILTER_SZIP 1 >| #define HAVE_PTHREAD_H 1 >| #define HAVE_LIBPTHREAD 1 >| #define HAVE_TM_GMTOFF 1 >| #define HAVE_STRUCT_TM_TM_ZONE 1 >| #define HAVE_TM_ZONE 1 >| #define HAVE_STRUCT_TIMEZONE 1 >| #define GETTIMEOFDAY_GIVES_TZ 1 >| #define HAVE_STAT_ST_BLOCKS 1 >| /* end confdefs.h. */ >| /* Define _getvideoconfig to an innocuous variant, in case <limits.h> declares _getvideoconfig. >| For example, HP-UX 11i <limits.h> declares gettimeofday. */ >| #define _getvideoconfig innocuous__getvideoconfig >| >| /* System header to define __stub macros and hopefully few prototypes, >| which can conflict with char _getvideoconfig (); below. >| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since >| <limits.h> exists even on freestanding compilers. */ >| >| #ifdef __STDC__ >| # include <limits.h> >| #else >| # include <assert.h> >| #endif >| >| #undef _getvideoconfig >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char _getvideoconfig (); >| /* The GNU C library defines this for functions which it implements >| to always fail with ENOSYS. Some functions are actually named >| something starting with __ and the normal name is an alias. */ >| #if defined __stub__getvideoconfig || defined __stub____getvideoconfig >| choke me >| #endif >| >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| return _getvideoconfig (); >| ; >| return 0; >| } >configure:25623: result: no >configure:25623: checking for gettextinfo >configure:25623: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp/cc5LPbCD.o: In function `main': >conftest.c:(.text+0x7): undefined reference to `gettextinfo' >collect2: ld returned 1 exit status >configure:25623: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| #define SIZEOF_CHAR 1 >| #define SIZEOF_SHORT 2 >| #define SIZEOF_INT 4 >| #define SIZEOF_UNSIGNED 4 >| #define SIZEOF_LONG 8 >| #define SIZEOF_LONG_LONG 8 >| #define SIZEOF___INT64 0 >| #define SIZEOF_FLOAT 4 >| #define SIZEOF_DOUBLE 8 >| #define SIZEOF_LONG_DOUBLE 16 >| #include <sys/types.h> >| #include <stdint.h> >| #define SIZEOF_INT8_T 1 >| #define SIZEOF_UINT8_T 1 >| #define SIZEOF_INT_LEAST8_T 1 >| #define SIZEOF_UINT_LEAST8_T 1 >| #define SIZEOF_INT_FAST8_T 1 >| #define SIZEOF_UINT_FAST8_T 1 >| #define SIZEOF_INT16_T 2 >| #define SIZEOF_UINT16_T 2 >| #define SIZEOF_INT_LEAST16_T 2 >| #define SIZEOF_UINT_LEAST16_T 2 >| #define SIZEOF_INT_FAST16_T 8 >| #define SIZEOF_UINT_FAST16_T 8 >| #define SIZEOF_INT32_T 4 >| #define SIZEOF_UINT32_T 4 >| #define SIZEOF_INT_LEAST32_T 4 >| #define SIZEOF_UINT_LEAST32_T 4 >| #define SIZEOF_INT_FAST32_T 8 >| #define SIZEOF_UINT_FAST32_T 8 >| #define SIZEOF_INT64_T 8 >| #define SIZEOF_UINT64_T 8 >| #define SIZEOF_INT_LEAST64_T 8 >| #define SIZEOF_UINT_LEAST64_T 8 >| #define SIZEOF_INT_FAST64_T 8 >| #define SIZEOF_UINT_FAST64_T 8 >| #define SIZEOF_SIZE_T 8 >| #define SIZEOF_SSIZE_T 8 >| #define SIZEOF_PTRDIFF_T 8 >| #include <sys/types.h> /*for off_t definition*/ >| #define SIZEOF_OFF_T 8 >| #define SIZEOF_OFF64_T 8 >| #define DEV_T_IS_SCALAR 1 >| #define HAVE_ZLIB_H 1 >| #define HAVE_LIBZ 1 >| #define HAVE_FILTER_DEFLATE 1 >| #define HAVE_SZLIB_H 1 >| #define HAVE_LIBSZ 1 >| #define HAVE_FILTER_SZIP 1 >| #define HAVE_PTHREAD_H 1 >| #define HAVE_LIBPTHREAD 1 >| #define HAVE_TM_GMTOFF 1 >| #define HAVE_STRUCT_TM_TM_ZONE 1 >| #define HAVE_TM_ZONE 1 >| #define HAVE_STRUCT_TIMEZONE 1 >| #define GETTIMEOFDAY_GIVES_TZ 1 >| #define HAVE_STAT_ST_BLOCKS 1 >| /* end confdefs.h. */ >| /* Define gettextinfo to an innocuous variant, in case <limits.h> declares gettextinfo. >| For example, HP-UX 11i <limits.h> declares gettimeofday. */ >| #define gettextinfo innocuous_gettextinfo >| >| /* System header to define __stub macros and hopefully few prototypes, >| which can conflict with char gettextinfo (); below. >| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since >| <limits.h> exists even on freestanding compilers. */ >| >| #ifdef __STDC__ >| # include <limits.h> >| #else >| # include <assert.h> >| #endif >| >| #undef gettextinfo >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char gettextinfo (); >| /* The GNU C library defines this for functions which it implements >| to always fail with ENOSYS. Some functions are actually named >| something starting with __ and the normal name is an alias. */ >| #if defined __stub_gettextinfo || defined __stub___gettextinfo >| choke me >| #endif >| >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| return gettextinfo (); >| ; >| return 0; >| } >configure:25623: result: no >configure:25623: checking for GetConsoleScreenBufferInfo >configure:25623: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp/ccJ5GJkI.o: In function `main': >conftest.c:(.text+0x7): undefined reference to `GetConsoleScreenBufferInfo' >collect2: ld returned 1 exit status >configure:25623: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| #define SIZEOF_CHAR 1 >| #define SIZEOF_SHORT 2 >| #define SIZEOF_INT 4 >| #define SIZEOF_UNSIGNED 4 >| #define SIZEOF_LONG 8 >| #define SIZEOF_LONG_LONG 8 >| #define SIZEOF___INT64 0 >| #define SIZEOF_FLOAT 4 >| #define SIZEOF_DOUBLE 8 >| #define SIZEOF_LONG_DOUBLE 16 >| #include <sys/types.h> >| #include <stdint.h> >| #define SIZEOF_INT8_T 1 >| #define SIZEOF_UINT8_T 1 >| #define SIZEOF_INT_LEAST8_T 1 >| #define SIZEOF_UINT_LEAST8_T 1 >| #define SIZEOF_INT_FAST8_T 1 >| #define SIZEOF_UINT_FAST8_T 1 >| #define SIZEOF_INT16_T 2 >| #define SIZEOF_UINT16_T 2 >| #define SIZEOF_INT_LEAST16_T 2 >| #define SIZEOF_UINT_LEAST16_T 2 >| #define SIZEOF_INT_FAST16_T 8 >| #define SIZEOF_UINT_FAST16_T 8 >| #define SIZEOF_INT32_T 4 >| #define SIZEOF_UINT32_T 4 >| #define SIZEOF_INT_LEAST32_T 4 >| #define SIZEOF_UINT_LEAST32_T 4 >| #define SIZEOF_INT_FAST32_T 8 >| #define SIZEOF_UINT_FAST32_T 8 >| #define SIZEOF_INT64_T 8 >| #define SIZEOF_UINT64_T 8 >| #define SIZEOF_INT_LEAST64_T 8 >| #define SIZEOF_UINT_LEAST64_T 8 >| #define SIZEOF_INT_FAST64_T 8 >| #define SIZEOF_UINT_FAST64_T 8 >| #define SIZEOF_SIZE_T 8 >| #define SIZEOF_SSIZE_T 8 >| #define SIZEOF_PTRDIFF_T 8 >| #include <sys/types.h> /*for off_t definition*/ >| #define SIZEOF_OFF_T 8 >| #define SIZEOF_OFF64_T 8 >| #define DEV_T_IS_SCALAR 1 >| #define HAVE_ZLIB_H 1 >| #define HAVE_LIBZ 1 >| #define HAVE_FILTER_DEFLATE 1 >| #define HAVE_SZLIB_H 1 >| #define HAVE_LIBSZ 1 >| #define HAVE_FILTER_SZIP 1 >| #define HAVE_PTHREAD_H 1 >| #define HAVE_LIBPTHREAD 1 >| #define HAVE_TM_GMTOFF 1 >| #define HAVE_STRUCT_TM_TM_ZONE 1 >| #define HAVE_TM_ZONE 1 >| #define HAVE_STRUCT_TIMEZONE 1 >| #define GETTIMEOFDAY_GIVES_TZ 1 >| #define HAVE_STAT_ST_BLOCKS 1 >| /* end confdefs.h. */ >| /* Define GetConsoleScreenBufferInfo to an innocuous variant, in case <limits.h> declares GetConsoleScreenBufferInfo. >| For example, HP-UX 11i <limits.h> declares gettimeofday. */ >| #define GetConsoleScreenBufferInfo innocuous_GetConsoleScreenBufferInfo >| >| /* System header to define __stub macros and hopefully few prototypes, >| which can conflict with char GetConsoleScreenBufferInfo (); below. >| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since >| <limits.h> exists even on freestanding compilers. */ >| >| #ifdef __STDC__ >| # include <limits.h> >| #else >| # include <assert.h> >| #endif >| >| #undef GetConsoleScreenBufferInfo >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char GetConsoleScreenBufferInfo (); >| /* The GNU C library defines this for functions which it implements >| to always fail with ENOSYS. Some functions are actually named >| something starting with __ and the normal name is an alias. */ >| #if defined __stub_GetConsoleScreenBufferInfo || defined __stub___GetConsoleScreenBufferInfo >| choke me >| #endif >| >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| return GetConsoleScreenBufferInfo (); >| ; >| return 0; >| } >configure:25623: result: no >configure:25635: checking for _scrsize >configure:25635: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp/cc7BW9xM.o: In function `main': >conftest.c:(.text+0x7): undefined reference to `_scrsize' >collect2: ld returned 1 exit status >configure:25635: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| #define SIZEOF_CHAR 1 >| #define SIZEOF_SHORT 2 >| #define SIZEOF_INT 4 >| #define SIZEOF_UNSIGNED 4 >| #define SIZEOF_LONG 8 >| #define SIZEOF_LONG_LONG 8 >| #define SIZEOF___INT64 0 >| #define SIZEOF_FLOAT 4 >| #define SIZEOF_DOUBLE 8 >| #define SIZEOF_LONG_DOUBLE 16 >| #include <sys/types.h> >| #include <stdint.h> >| #define SIZEOF_INT8_T 1 >| #define SIZEOF_UINT8_T 1 >| #define SIZEOF_INT_LEAST8_T 1 >| #define SIZEOF_UINT_LEAST8_T 1 >| #define SIZEOF_INT_FAST8_T 1 >| #define SIZEOF_UINT_FAST8_T 1 >| #define SIZEOF_INT16_T 2 >| #define SIZEOF_UINT16_T 2 >| #define SIZEOF_INT_LEAST16_T 2 >| #define SIZEOF_UINT_LEAST16_T 2 >| #define SIZEOF_INT_FAST16_T 8 >| #define SIZEOF_UINT_FAST16_T 8 >| #define SIZEOF_INT32_T 4 >| #define SIZEOF_UINT32_T 4 >| #define SIZEOF_INT_LEAST32_T 4 >| #define SIZEOF_UINT_LEAST32_T 4 >| #define SIZEOF_INT_FAST32_T 8 >| #define SIZEOF_UINT_FAST32_T 8 >| #define SIZEOF_INT64_T 8 >| #define SIZEOF_UINT64_T 8 >| #define SIZEOF_INT_LEAST64_T 8 >| #define SIZEOF_UINT_LEAST64_T 8 >| #define SIZEOF_INT_FAST64_T 8 >| #define SIZEOF_UINT_FAST64_T 8 >| #define SIZEOF_SIZE_T 8 >| #define SIZEOF_SSIZE_T 8 >| #define SIZEOF_PTRDIFF_T 8 >| #include <sys/types.h> /*for off_t definition*/ >| #define SIZEOF_OFF_T 8 >| #define SIZEOF_OFF64_T 8 >| #define DEV_T_IS_SCALAR 1 >| #define HAVE_ZLIB_H 1 >| #define HAVE_LIBZ 1 >| #define HAVE_FILTER_DEFLATE 1 >| #define HAVE_SZLIB_H 1 >| #define HAVE_LIBSZ 1 >| #define HAVE_FILTER_SZIP 1 >| #define HAVE_PTHREAD_H 1 >| #define HAVE_LIBPTHREAD 1 >| #define HAVE_TM_GMTOFF 1 >| #define HAVE_STRUCT_TM_TM_ZONE 1 >| #define HAVE_TM_ZONE 1 >| #define HAVE_STRUCT_TIMEZONE 1 >| #define GETTIMEOFDAY_GIVES_TZ 1 >| #define HAVE_STAT_ST_BLOCKS 1 >| /* end confdefs.h. */ >| /* Define _scrsize to an innocuous variant, in case <limits.h> declares _scrsize. >| For example, HP-UX 11i <limits.h> declares gettimeofday. */ >| #define _scrsize innocuous__scrsize >| >| /* System header to define __stub macros and hopefully few prototypes, >| which can conflict with char _scrsize (); below. >| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since >| <limits.h> exists even on freestanding compilers. */ >| >| #ifdef __STDC__ >| # include <limits.h> >| #else >| # include <assert.h> >| #endif >| >| #undef _scrsize >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char _scrsize (); >| /* The GNU C library defines this for functions which it implements >| to always fail with ENOSYS. Some functions are actually named >| something starting with __ and the normal name is an alias. */ >| #if defined __stub__scrsize || defined __stub____scrsize >| choke me >| #endif >| >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| return _scrsize (); >| ; >| return 0; >| } >configure:25635: result: no >configure:25635: checking for ioctl >configure:25635: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25635: $? = 0 >configure:25635: result: yes >configure:25645: checking for struct videoconfig >configure:25666: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >conftest.c: In function 'main': >conftest.c:118:20: error: storage size of 'w' isn't known >configure:25666: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| #define SIZEOF_CHAR 1 >| #define SIZEOF_SHORT 2 >| #define SIZEOF_INT 4 >| #define SIZEOF_UNSIGNED 4 >| #define SIZEOF_LONG 8 >| #define SIZEOF_LONG_LONG 8 >| #define SIZEOF___INT64 0 >| #define SIZEOF_FLOAT 4 >| #define SIZEOF_DOUBLE 8 >| #define SIZEOF_LONG_DOUBLE 16 >| #include <sys/types.h> >| #include <stdint.h> >| #define SIZEOF_INT8_T 1 >| #define SIZEOF_UINT8_T 1 >| #define SIZEOF_INT_LEAST8_T 1 >| #define SIZEOF_UINT_LEAST8_T 1 >| #define SIZEOF_INT_FAST8_T 1 >| #define SIZEOF_UINT_FAST8_T 1 >| #define SIZEOF_INT16_T 2 >| #define SIZEOF_UINT16_T 2 >| #define SIZEOF_INT_LEAST16_T 2 >| #define SIZEOF_UINT_LEAST16_T 2 >| #define SIZEOF_INT_FAST16_T 8 >| #define SIZEOF_UINT_FAST16_T 8 >| #define SIZEOF_INT32_T 4 >| #define SIZEOF_UINT32_T 4 >| #define SIZEOF_INT_LEAST32_T 4 >| #define SIZEOF_UINT_LEAST32_T 4 >| #define SIZEOF_INT_FAST32_T 8 >| #define SIZEOF_UINT_FAST32_T 8 >| #define SIZEOF_INT64_T 8 >| #define SIZEOF_UINT64_T 8 >| #define SIZEOF_INT_LEAST64_T 8 >| #define SIZEOF_UINT_LEAST64_T 8 >| #define SIZEOF_INT_FAST64_T 8 >| #define SIZEOF_UINT_FAST64_T 8 >| #define SIZEOF_SIZE_T 8 >| #define SIZEOF_SSIZE_T 8 >| #define SIZEOF_PTRDIFF_T 8 >| #include <sys/types.h> /*for off_t definition*/ >| #define SIZEOF_OFF_T 8 >| #define SIZEOF_OFF64_T 8 >| #define DEV_T_IS_SCALAR 1 >| #define HAVE_ZLIB_H 1 >| #define HAVE_LIBZ 1 >| #define HAVE_FILTER_DEFLATE 1 >| #define HAVE_SZLIB_H 1 >| #define HAVE_LIBSZ 1 >| #define HAVE_FILTER_SZIP 1 >| #define HAVE_PTHREAD_H 1 >| #define HAVE_LIBPTHREAD 1 >| #define HAVE_TM_GMTOFF 1 >| #define HAVE_STRUCT_TM_TM_ZONE 1 >| #define HAVE_TM_ZONE 1 >| #define HAVE_STRUCT_TIMEZONE 1 >| #define GETTIMEOFDAY_GIVES_TZ 1 >| #define HAVE_STAT_ST_BLOCKS 1 >| #define HAVE_IOCTL 1 >| /* end confdefs.h. */ >| >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| struct videoconfig w; w.numtextcols=0; >| ; >| return 0; >| } >configure:25673: result: no >configure:25678: checking for struct text_info >configure:25699: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >conftest.c: In function 'main': >conftest.c:118:18: error: storage size of 'w' isn't known >configure:25699: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| #define SIZEOF_CHAR 1 >| #define SIZEOF_SHORT 2 >| #define SIZEOF_INT 4 >| #define SIZEOF_UNSIGNED 4 >| #define SIZEOF_LONG 8 >| #define SIZEOF_LONG_LONG 8 >| #define SIZEOF___INT64 0 >| #define SIZEOF_FLOAT 4 >| #define SIZEOF_DOUBLE 8 >| #define SIZEOF_LONG_DOUBLE 16 >| #include <sys/types.h> >| #include <stdint.h> >| #define SIZEOF_INT8_T 1 >| #define SIZEOF_UINT8_T 1 >| #define SIZEOF_INT_LEAST8_T 1 >| #define SIZEOF_UINT_LEAST8_T 1 >| #define SIZEOF_INT_FAST8_T 1 >| #define SIZEOF_UINT_FAST8_T 1 >| #define SIZEOF_INT16_T 2 >| #define SIZEOF_UINT16_T 2 >| #define SIZEOF_INT_LEAST16_T 2 >| #define SIZEOF_UINT_LEAST16_T 2 >| #define SIZEOF_INT_FAST16_T 8 >| #define SIZEOF_UINT_FAST16_T 8 >| #define SIZEOF_INT32_T 4 >| #define SIZEOF_UINT32_T 4 >| #define SIZEOF_INT_LEAST32_T 4 >| #define SIZEOF_UINT_LEAST32_T 4 >| #define SIZEOF_INT_FAST32_T 8 >| #define SIZEOF_UINT_FAST32_T 8 >| #define SIZEOF_INT64_T 8 >| #define SIZEOF_UINT64_T 8 >| #define SIZEOF_INT_LEAST64_T 8 >| #define SIZEOF_UINT_LEAST64_T 8 >| #define SIZEOF_INT_FAST64_T 8 >| #define SIZEOF_UINT_FAST64_T 8 >| #define SIZEOF_SIZE_T 8 >| #define SIZEOF_SSIZE_T 8 >| #define SIZEOF_PTRDIFF_T 8 >| #include <sys/types.h> /*for off_t definition*/ >| #define SIZEOF_OFF_T 8 >| #define SIZEOF_OFF64_T 8 >| #define DEV_T_IS_SCALAR 1 >| #define HAVE_ZLIB_H 1 >| #define HAVE_LIBZ 1 >| #define HAVE_FILTER_DEFLATE 1 >| #define HAVE_SZLIB_H 1 >| #define HAVE_LIBSZ 1 >| #define HAVE_FILTER_SZIP 1 >| #define HAVE_PTHREAD_H 1 >| #define HAVE_LIBPTHREAD 1 >| #define HAVE_TM_GMTOFF 1 >| #define HAVE_STRUCT_TM_TM_ZONE 1 >| #define HAVE_TM_ZONE 1 >| #define HAVE_STRUCT_TIMEZONE 1 >| #define GETTIMEOFDAY_GIVES_TZ 1 >| #define HAVE_STAT_ST_BLOCKS 1 >| #define HAVE_IOCTL 1 >| /* end confdefs.h. */ >| >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| struct text_info w; w.screenwidth=0; >| ; >| return 0; >| } >configure:25706: result: no >configure:25711: checking for TIOCGWINSZ >configure:25732: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:25732: $? = 0 >configure:25736: result: yes >configure:25744: checking for TIOCGETD >configure:25765: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:25765: $? = 0 >configure:25769: result: yes >configure:25781: checking for alarm >configure:25781: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25781: $? = 0 >configure:25781: result: yes >configure:25781: checking for BSDgettimeofday >configure:25781: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp/ccvb8TSa.o: In function `main': >conftest.c:(.text+0x7): undefined reference to `BSDgettimeofday' >collect2: ld returned 1 exit status >configure:25781: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| #define SIZEOF_CHAR 1 >| #define SIZEOF_SHORT 2 >| #define SIZEOF_INT 4 >| #define SIZEOF_UNSIGNED 4 >| #define SIZEOF_LONG 8 >| #define SIZEOF_LONG_LONG 8 >| #define SIZEOF___INT64 0 >| #define SIZEOF_FLOAT 4 >| #define SIZEOF_DOUBLE 8 >| #define SIZEOF_LONG_DOUBLE 16 >| #include <sys/types.h> >| #include <stdint.h> >| #define SIZEOF_INT8_T 1 >| #define SIZEOF_UINT8_T 1 >| #define SIZEOF_INT_LEAST8_T 1 >| #define SIZEOF_UINT_LEAST8_T 1 >| #define SIZEOF_INT_FAST8_T 1 >| #define SIZEOF_UINT_FAST8_T 1 >| #define SIZEOF_INT16_T 2 >| #define SIZEOF_UINT16_T 2 >| #define SIZEOF_INT_LEAST16_T 2 >| #define SIZEOF_UINT_LEAST16_T 2 >| #define SIZEOF_INT_FAST16_T 8 >| #define SIZEOF_UINT_FAST16_T 8 >| #define SIZEOF_INT32_T 4 >| #define SIZEOF_UINT32_T 4 >| #define SIZEOF_INT_LEAST32_T 4 >| #define SIZEOF_UINT_LEAST32_T 4 >| #define SIZEOF_INT_FAST32_T 8 >| #define SIZEOF_UINT_FAST32_T 8 >| #define SIZEOF_INT64_T 8 >| #define SIZEOF_UINT64_T 8 >| #define SIZEOF_INT_LEAST64_T 8 >| #define SIZEOF_UINT_LEAST64_T 8 >| #define SIZEOF_INT_FAST64_T 8 >| #define SIZEOF_UINT_FAST64_T 8 >| #define SIZEOF_SIZE_T 8 >| #define SIZEOF_SSIZE_T 8 >| #define SIZEOF_PTRDIFF_T 8 >| #include <sys/types.h> /*for off_t definition*/ >| #define SIZEOF_OFF_T 8 >| #define SIZEOF_OFF64_T 8 >| #define DEV_T_IS_SCALAR 1 >| #define HAVE_ZLIB_H 1 >| #define HAVE_LIBZ 1 >| #define HAVE_FILTER_DEFLATE 1 >| #define HAVE_SZLIB_H 1 >| #define HAVE_LIBSZ 1 >| #define HAVE_FILTER_SZIP 1 >| #define HAVE_PTHREAD_H 1 >| #define HAVE_LIBPTHREAD 1 >| #define HAVE_TM_GMTOFF 1 >| #define HAVE_STRUCT_TM_TM_ZONE 1 >| #define HAVE_TM_ZONE 1 >| #define HAVE_STRUCT_TIMEZONE 1 >| #define GETTIMEOFDAY_GIVES_TZ 1 >| #define HAVE_STAT_ST_BLOCKS 1 >| #define HAVE_IOCTL 1 >| #define HAVE_TIOCGWINSZ 1 >| #define HAVE_TIOCGETD 1 >| #define HAVE_ALARM 1 >| /* end confdefs.h. */ >| /* Define BSDgettimeofday to an innocuous variant, in case <limits.h> declares BSDgettimeofday. >| For example, HP-UX 11i <limits.h> declares gettimeofday. */ >| #define BSDgettimeofday innocuous_BSDgettimeofday >| >| /* System header to define __stub macros and hopefully few prototypes, >| which can conflict with char BSDgettimeofday (); below. >| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since >| <limits.h> exists even on freestanding compilers. */ >| >| #ifdef __STDC__ >| # include <limits.h> >| #else >| # include <assert.h> >| #endif >| >| #undef BSDgettimeofday >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char BSDgettimeofday (); >| /* The GNU C library defines this for functions which it implements >| to always fail with ENOSYS. Some functions are actually named >| something starting with __ and the normal name is an alias. */ >| #if defined __stub_BSDgettimeofday || defined __stub___BSDgettimeofday >| choke me >| #endif >| >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| return BSDgettimeofday (); >| ; >| return 0; >| } >configure:25781: result: no >configure:25781: checking for fork >configure:25781: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >conftest.c:132:6: warning: conflicting types for built-in function 'fork' >configure:25781: $? = 0 >configure:25781: result: yes >configure:25781: checking for frexpf >configure:25781: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >conftest.c:133:6: warning: conflicting types for built-in function 'frexpf' >configure:25781: $? = 0 >configure:25781: result: yes >configure:25781: checking for frexpl >configure:25781: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >conftest.c:134:6: warning: conflicting types for built-in function 'frexpl' >configure:25781: $? = 0 >configure:25781: result: yes >configure:25793: checking for gethostname >configure:25793: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25793: $? = 0 >configure:25793: result: yes >configure:25793: checking for getpwuid >configure:25793: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25793: $? = 0 >configure:25793: result: yes >configure:25793: checking for getrusage >configure:25793: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25793: $? = 0 >configure:25793: result: yes >configure:25793: checking for lstat >configure:25793: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25793: $? = 0 >configure:25793: result: yes >configure:25805: checking for rand_r >configure:25805: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25805: $? = 0 >configure:25805: result: yes >configure:25805: checking for random >configure:25805: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25805: $? = 0 >configure:25805: result: yes >configure:25805: checking for setsysinfo >configure:25805: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp/ccvC4CwO.o: In function `main': >conftest.c:(.text+0x7): undefined reference to `setsysinfo' >collect2: ld returned 1 exit status >configure:25805: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| #define SIZEOF_CHAR 1 >| #define SIZEOF_SHORT 2 >| #define SIZEOF_INT 4 >| #define SIZEOF_UNSIGNED 4 >| #define SIZEOF_LONG 8 >| #define SIZEOF_LONG_LONG 8 >| #define SIZEOF___INT64 0 >| #define SIZEOF_FLOAT 4 >| #define SIZEOF_DOUBLE 8 >| #define SIZEOF_LONG_DOUBLE 16 >| #include <sys/types.h> >| #include <stdint.h> >| #define SIZEOF_INT8_T 1 >| #define SIZEOF_UINT8_T 1 >| #define SIZEOF_INT_LEAST8_T 1 >| #define SIZEOF_UINT_LEAST8_T 1 >| #define SIZEOF_INT_FAST8_T 1 >| #define SIZEOF_UINT_FAST8_T 1 >| #define SIZEOF_INT16_T 2 >| #define SIZEOF_UINT16_T 2 >| #define SIZEOF_INT_LEAST16_T 2 >| #define SIZEOF_UINT_LEAST16_T 2 >| #define SIZEOF_INT_FAST16_T 8 >| #define SIZEOF_UINT_FAST16_T 8 >| #define SIZEOF_INT32_T 4 >| #define SIZEOF_UINT32_T 4 >| #define SIZEOF_INT_LEAST32_T 4 >| #define SIZEOF_UINT_LEAST32_T 4 >| #define SIZEOF_INT_FAST32_T 8 >| #define SIZEOF_UINT_FAST32_T 8 >| #define SIZEOF_INT64_T 8 >| #define SIZEOF_UINT64_T 8 >| #define SIZEOF_INT_LEAST64_T 8 >| #define SIZEOF_UINT_LEAST64_T 8 >| #define SIZEOF_INT_FAST64_T 8 >| #define SIZEOF_UINT_FAST64_T 8 >| #define SIZEOF_SIZE_T 8 >| #define SIZEOF_SSIZE_T 8 >| #define SIZEOF_PTRDIFF_T 8 >| #include <sys/types.h> /*for off_t definition*/ >| #define SIZEOF_OFF_T 8 >| #define SIZEOF_OFF64_T 8 >| #define DEV_T_IS_SCALAR 1 >| #define HAVE_ZLIB_H 1 >| #define HAVE_LIBZ 1 >| #define HAVE_FILTER_DEFLATE 1 >| #define HAVE_SZLIB_H 1 >| #define HAVE_LIBSZ 1 >| #define HAVE_FILTER_SZIP 1 >| #define HAVE_PTHREAD_H 1 >| #define HAVE_LIBPTHREAD 1 >| #define HAVE_TM_GMTOFF 1 >| #define HAVE_STRUCT_TM_TM_ZONE 1 >| #define HAVE_TM_ZONE 1 >| #define HAVE_STRUCT_TIMEZONE 1 >| #define GETTIMEOFDAY_GIVES_TZ 1 >| #define HAVE_STAT_ST_BLOCKS 1 >| #define HAVE_IOCTL 1 >| #define HAVE_TIOCGWINSZ 1 >| #define HAVE_TIOCGETD 1 >| #define HAVE_ALARM 1 >| #define HAVE_FORK 1 >| #define HAVE_FREXPF 1 >| #define HAVE_FREXPL 1 >| #define HAVE_GETHOSTNAME 1 >| #define HAVE_GETPWUID 1 >| #define HAVE_GETRUSAGE 1 >| #define HAVE_LSTAT 1 >| #define HAVE_RAND_R 1 >| #define HAVE_RANDOM 1 >| /* end confdefs.h. */ >| /* Define setsysinfo to an innocuous variant, in case <limits.h> declares setsysinfo. >| For example, HP-UX 11i <limits.h> declares gettimeofday. */ >| #define setsysinfo innocuous_setsysinfo >| >| /* System header to define __stub macros and hopefully few prototypes, >| which can conflict with char setsysinfo (); below. >| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since >| <limits.h> exists even on freestanding compilers. */ >| >| #ifdef __STDC__ >| # include <limits.h> >| #else >| # include <assert.h> >| #endif >| >| #undef setsysinfo >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char setsysinfo (); >| /* The GNU C library defines this for functions which it implements >| to always fail with ENOSYS. Some functions are actually named >| something starting with __ and the normal name is an alias. */ >| #if defined __stub_setsysinfo || defined __stub___setsysinfo >| choke me >| #endif >| >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| return setsysinfo (); >| ; >| return 0; >| } >configure:25805: result: no >configure:25817: checking for signal >configure:25817: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25817: $? = 0 >configure:25817: result: yes >configure:25817: checking for longjmp >configure:25817: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25817: $? = 0 >configure:25817: result: yes >configure:25817: checking for setjmp >configure:25817: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25817: $? = 0 >configure:25817: result: yes >configure:25817: checking for siglongjmp >configure:25817: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25817: $? = 0 >configure:25817: result: yes >configure:25817: checking for sigsetjmp >configure:25817: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp/ccW3tspe.o: In function `main': >conftest.c:(.text+0x7): undefined reference to `sigsetjmp' >collect2: ld returned 1 exit status >configure:25817: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| #define SIZEOF_CHAR 1 >| #define SIZEOF_SHORT 2 >| #define SIZEOF_INT 4 >| #define SIZEOF_UNSIGNED 4 >| #define SIZEOF_LONG 8 >| #define SIZEOF_LONG_LONG 8 >| #define SIZEOF___INT64 0 >| #define SIZEOF_FLOAT 4 >| #define SIZEOF_DOUBLE 8 >| #define SIZEOF_LONG_DOUBLE 16 >| #include <sys/types.h> >| #include <stdint.h> >| #define SIZEOF_INT8_T 1 >| #define SIZEOF_UINT8_T 1 >| #define SIZEOF_INT_LEAST8_T 1 >| #define SIZEOF_UINT_LEAST8_T 1 >| #define SIZEOF_INT_FAST8_T 1 >| #define SIZEOF_UINT_FAST8_T 1 >| #define SIZEOF_INT16_T 2 >| #define SIZEOF_UINT16_T 2 >| #define SIZEOF_INT_LEAST16_T 2 >| #define SIZEOF_UINT_LEAST16_T 2 >| #define SIZEOF_INT_FAST16_T 8 >| #define SIZEOF_UINT_FAST16_T 8 >| #define SIZEOF_INT32_T 4 >| #define SIZEOF_UINT32_T 4 >| #define SIZEOF_INT_LEAST32_T 4 >| #define SIZEOF_UINT_LEAST32_T 4 >| #define SIZEOF_INT_FAST32_T 8 >| #define SIZEOF_UINT_FAST32_T 8 >| #define SIZEOF_INT64_T 8 >| #define SIZEOF_UINT64_T 8 >| #define SIZEOF_INT_LEAST64_T 8 >| #define SIZEOF_UINT_LEAST64_T 8 >| #define SIZEOF_INT_FAST64_T 8 >| #define SIZEOF_UINT_FAST64_T 8 >| #define SIZEOF_SIZE_T 8 >| #define SIZEOF_SSIZE_T 8 >| #define SIZEOF_PTRDIFF_T 8 >| #include <sys/types.h> /*for off_t definition*/ >| #define SIZEOF_OFF_T 8 >| #define SIZEOF_OFF64_T 8 >| #define DEV_T_IS_SCALAR 1 >| #define HAVE_ZLIB_H 1 >| #define HAVE_LIBZ 1 >| #define HAVE_FILTER_DEFLATE 1 >| #define HAVE_SZLIB_H 1 >| #define HAVE_LIBSZ 1 >| #define HAVE_FILTER_SZIP 1 >| #define HAVE_PTHREAD_H 1 >| #define HAVE_LIBPTHREAD 1 >| #define HAVE_TM_GMTOFF 1 >| #define HAVE_STRUCT_TM_TM_ZONE 1 >| #define HAVE_TM_ZONE 1 >| #define HAVE_STRUCT_TIMEZONE 1 >| #define GETTIMEOFDAY_GIVES_TZ 1 >| #define HAVE_STAT_ST_BLOCKS 1 >| #define HAVE_IOCTL 1 >| #define HAVE_TIOCGWINSZ 1 >| #define HAVE_TIOCGETD 1 >| #define HAVE_ALARM 1 >| #define HAVE_FORK 1 >| #define HAVE_FREXPF 1 >| #define HAVE_FREXPL 1 >| #define HAVE_GETHOSTNAME 1 >| #define HAVE_GETPWUID 1 >| #define HAVE_GETRUSAGE 1 >| #define HAVE_LSTAT 1 >| #define HAVE_RAND_R 1 >| #define HAVE_RANDOM 1 >| #define HAVE_SIGNAL 1 >| #define HAVE_LONGJMP 1 >| #define HAVE_SETJMP 1 >| #define HAVE_SIGLONGJMP 1 >| /* end confdefs.h. */ >| /* Define sigsetjmp to an innocuous variant, in case <limits.h> declares sigsetjmp. >| For example, HP-UX 11i <limits.h> declares gettimeofday. */ >| #define sigsetjmp innocuous_sigsetjmp >| >| /* System header to define __stub macros and hopefully few prototypes, >| which can conflict with char sigsetjmp (); below. >| Prefer <limits.h> to <assert.h> if __STDC__ is defined, since >| <limits.h> exists even on freestanding compilers. */ >| >| #ifdef __STDC__ >| # include <limits.h> >| #else >| # include <assert.h> >| #endif >| >| #undef sigsetjmp >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char sigsetjmp (); >| /* The GNU C library defines this for functions which it implements >| to always fail with ENOSYS. Some functions are actually named >| something starting with __ and the normal name is an alias. */ >| #if defined __stub_sigsetjmp || defined __stub___sigsetjmp >| choke me >| #endif >| >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| return sigsetjmp (); >| ; >| return 0; >| } >configure:25817: result: no >configure:25817: checking for sigprocmask >configure:25817: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25817: $? = 0 >configure:25817: result: yes >configure:25829: checking for snprintf >configure:25829: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >conftest.c:146:6: warning: conflicting types for built-in function 'snprintf' >configure:25829: $? = 0 >configure:25829: result: yes >configure:25829: checking for srandom >configure:25829: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25829: $? = 0 >configure:25829: result: yes >configure:25829: checking for strdup >configure:25829: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >conftest.c:148:6: warning: conflicting types for built-in function 'strdup' >configure:25829: $? = 0 >configure:25829: result: yes >configure:25829: checking for symlink >configure:25829: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25829: $? = 0 >configure:25829: result: yes >configure:25829: checking for system >configure:25829: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25829: $? = 0 >configure:25829: result: yes >configure:25841: checking for tmpfile >configure:25841: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25841: $? = 0 >configure:25841: result: yes >configure:25841: checking for vasprintf >configure:25841: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25841: $? = 0 >configure:25841: result: yes >configure:25841: checking for waitpid >configure:25841: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25841: $? = 0 >configure:25841: result: yes >configure:25853: checking for vsnprintf >configure:25853: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >conftest.c:154:6: warning: conflicting types for built-in function 'vsnprintf' >configure:25853: $? = 0 >configure:25853: result: yes >configure:25858: checking if vsnprintf returns correct value >configure:25896: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:25896: $? = 0 >configure:25896: ./conftest >configure:25896: $? = 0 >configure:25909: result: yes >configure:25923: checking if lone colon can be used as an argument >configure:25945: result: yes >configure:25950: checking for an ANSI C-conforming const >configure:26023: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:26023: $? = 0 >configure:26030: result: yes >configure:26038: checking for inline >configure:26054: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:26054: $? = 0 >configure:26062: result: inline >configure:26081: checking for __attribute__ extension >configure:26102: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:26102: $? = 0 >configure:26106: result: yes >configure:26113: checking for __func__ extension >configure:26134: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:26134: $? = 0 >configure:26138: result: yes >configure:26145: checking for __FUNCTION__ extension >configure:26166: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:26166: $? = 0 >configure:26170: result: yes >configure:26177: checking for C99 designated initialization support >configure:26206: mpicc -c -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 >configure:26206: $? = 0 >configure:26210: result: yes >configure:26218: checking how to print long long >configure:26246: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >conftest.c: In function 'main': >conftest.c:146:2: warning: format '%ld' expects type 'long int', but argument 3 has type 'long long int' >configure:26246: $? = 0 >configure:26246: ./conftest >configure:26246: $? = 0 >configure:26256: result: %ld and %lu >configure:26264: checking Threads support system scope >configure:26294: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:26294: $? = 0 >configure:26294: ./conftest >configure:26294: $? = 0 >configure:26310: result: yes >configure:26375: checking for gpfs >configure:26377: result: suppressed >configure:26382: checking for debug flags >configure:26414: result: none >configure:26431: checking whether function stack tracking is enabled >configure:26450: result: no >configure:26455: checking whether metadata trace file code is enabled >configure:26474: result: no >configure:26480: checking for API tracing >configure:26504: result: no >configure:26512: checking for instrumented library >configure:26538: result: no >configure:26545: checking whether to clear file buffers >configure:26556: result: yes >configure:26570: checking whether a memory checking tool will be used >configure:26589: result: no >configure:26701: checking for parallel support files >configure:26710: result: provided by compiler >configure:26733: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >configure:26733: $? = 0 >configure:26871: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp/ccgLOluj.o: In function `main': >conftest.c:(.text+0x7): undefined reference to `MPI_File_open' >collect2: ld returned 1 exit status >configure:26871: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| #define SIZEOF_CHAR 1 >| #define SIZEOF_SHORT 2 >| #define SIZEOF_INT 4 >| #define SIZEOF_UNSIGNED 4 >| #define SIZEOF_LONG 8 >| #define SIZEOF_LONG_LONG 8 >| #define SIZEOF___INT64 0 >| #define SIZEOF_FLOAT 4 >| #define SIZEOF_DOUBLE 8 >| #define SIZEOF_LONG_DOUBLE 16 >| #include <sys/types.h> >| #include <stdint.h> >| #define SIZEOF_INT8_T 1 >| #define SIZEOF_UINT8_T 1 >| #define SIZEOF_INT_LEAST8_T 1 >| #define SIZEOF_UINT_LEAST8_T 1 >| #define SIZEOF_INT_FAST8_T 1 >| #define SIZEOF_UINT_FAST8_T 1 >| #define SIZEOF_INT16_T 2 >| #define SIZEOF_UINT16_T 2 >| #define SIZEOF_INT_LEAST16_T 2 >| #define SIZEOF_UINT_LEAST16_T 2 >| #define SIZEOF_INT_FAST16_T 8 >| #define SIZEOF_UINT_FAST16_T 8 >| #define SIZEOF_INT32_T 4 >| #define SIZEOF_UINT32_T 4 >| #define SIZEOF_INT_LEAST32_T 4 >| #define SIZEOF_UINT_LEAST32_T 4 >| #define SIZEOF_INT_FAST32_T 8 >| #define SIZEOF_UINT_FAST32_T 8 >| #define SIZEOF_INT64_T 8 >| #define SIZEOF_UINT64_T 8 >| #define SIZEOF_INT_LEAST64_T 8 >| #define SIZEOF_UINT_LEAST64_T 8 >| #define SIZEOF_INT_FAST64_T 8 >| #define SIZEOF_UINT_FAST64_T 8 >| #define SIZEOF_SIZE_T 8 >| #define SIZEOF_SSIZE_T 8 >| #define SIZEOF_PTRDIFF_T 8 >| #include <sys/types.h> /*for off_t definition*/ >| #define SIZEOF_OFF_T 8 >| #define SIZEOF_OFF64_T 8 >| #define DEV_T_IS_SCALAR 1 >| #define HAVE_ZLIB_H 1 >| #define HAVE_LIBZ 1 >| #define HAVE_FILTER_DEFLATE 1 >| #define HAVE_SZLIB_H 1 >| #define HAVE_LIBSZ 1 >| #define HAVE_FILTER_SZIP 1 >| #define HAVE_PTHREAD_H 1 >| #define HAVE_LIBPTHREAD 1 >| #define HAVE_TM_GMTOFF 1 >| #define HAVE_STRUCT_TM_TM_ZONE 1 >| #define HAVE_TM_ZONE 1 >| #define HAVE_STRUCT_TIMEZONE 1 >| #define GETTIMEOFDAY_GIVES_TZ 1 >| #define HAVE_STAT_ST_BLOCKS 1 >| #define HAVE_IOCTL 1 >| #define HAVE_TIOCGWINSZ 1 >| #define HAVE_TIOCGETD 1 >| #define HAVE_ALARM 1 >| #define HAVE_FORK 1 >| #define HAVE_FREXPF 1 >| #define HAVE_FREXPL 1 >| #define HAVE_GETHOSTNAME 1 >| #define HAVE_GETPWUID 1 >| #define HAVE_GETRUSAGE 1 >| #define HAVE_LSTAT 1 >| #define HAVE_RAND_R 1 >| #define HAVE_RANDOM 1 >| #define HAVE_SIGNAL 1 >| #define HAVE_LONGJMP 1 >| #define HAVE_SETJMP 1 >| #define HAVE_SIGLONGJMP 1 >| #define HAVE_SIGPROCMASK 1 >| #define HAVE_SNPRINTF 1 >| #define HAVE_SRANDOM 1 >| #define HAVE_STRDUP 1 >| #define HAVE_SYMLINK 1 >| #define HAVE_SYSTEM 1 >| #define HAVE_TMPFILE 1 >| #define HAVE_VASPRINTF 1 >| #define HAVE_WAITPID 1 >| #define HAVE_VSNPRINTF 1 >| #define VSNPRINTF_WORKS 1 >| #define HAVE_ATTRIBUTE 1 >| #define HAVE_C99_FUNC 1 >| #define HAVE_FUNCTION 1 >| #define HAVE_C99_DESIGNATED_INITIALIZER 1 >| #define PRINTF_LL_WIDTH "l" >| #define SYSTEM_SCOPE_THREADS 1 >| #define CLEAR_MEMORY 1 >| /* end confdefs.h. */ >| >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| MPI_File_open() >| ; >| return 0; >| } >configure:26874: checking for MPI_File_open in -lmpio >configure:26907: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lmpio -lpthread -lsz -lz -lm >&5 >/usr/lib/gcc/x86_64-pc-linux-gnu/4.5.2/../../../../x86_64-pc-linux-gnu/bin/ld: cannot find -lmpio >collect2: ld returned 1 exit status >configure:26907: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| #define SIZEOF_CHAR 1 >| #define SIZEOF_SHORT 2 >| #define SIZEOF_INT 4 >| #define SIZEOF_UNSIGNED 4 >| #define SIZEOF_LONG 8 >| #define SIZEOF_LONG_LONG 8 >| #define SIZEOF___INT64 0 >| #define SIZEOF_FLOAT 4 >| #define SIZEOF_DOUBLE 8 >| #define SIZEOF_LONG_DOUBLE 16 >| #include <sys/types.h> >| #include <stdint.h> >| #define SIZEOF_INT8_T 1 >| #define SIZEOF_UINT8_T 1 >| #define SIZEOF_INT_LEAST8_T 1 >| #define SIZEOF_UINT_LEAST8_T 1 >| #define SIZEOF_INT_FAST8_T 1 >| #define SIZEOF_UINT_FAST8_T 1 >| #define SIZEOF_INT16_T 2 >| #define SIZEOF_UINT16_T 2 >| #define SIZEOF_INT_LEAST16_T 2 >| #define SIZEOF_UINT_LEAST16_T 2 >| #define SIZEOF_INT_FAST16_T 8 >| #define SIZEOF_UINT_FAST16_T 8 >| #define SIZEOF_INT32_T 4 >| #define SIZEOF_UINT32_T 4 >| #define SIZEOF_INT_LEAST32_T 4 >| #define SIZEOF_UINT_LEAST32_T 4 >| #define SIZEOF_INT_FAST32_T 8 >| #define SIZEOF_UINT_FAST32_T 8 >| #define SIZEOF_INT64_T 8 >| #define SIZEOF_UINT64_T 8 >| #define SIZEOF_INT_LEAST64_T 8 >| #define SIZEOF_UINT_LEAST64_T 8 >| #define SIZEOF_INT_FAST64_T 8 >| #define SIZEOF_UINT_FAST64_T 8 >| #define SIZEOF_SIZE_T 8 >| #define SIZEOF_SSIZE_T 8 >| #define SIZEOF_PTRDIFF_T 8 >| #include <sys/types.h> /*for off_t definition*/ >| #define SIZEOF_OFF_T 8 >| #define SIZEOF_OFF64_T 8 >| #define DEV_T_IS_SCALAR 1 >| #define HAVE_ZLIB_H 1 >| #define HAVE_LIBZ 1 >| #define HAVE_FILTER_DEFLATE 1 >| #define HAVE_SZLIB_H 1 >| #define HAVE_LIBSZ 1 >| #define HAVE_FILTER_SZIP 1 >| #define HAVE_PTHREAD_H 1 >| #define HAVE_LIBPTHREAD 1 >| #define HAVE_TM_GMTOFF 1 >| #define HAVE_STRUCT_TM_TM_ZONE 1 >| #define HAVE_TM_ZONE 1 >| #define HAVE_STRUCT_TIMEZONE 1 >| #define GETTIMEOFDAY_GIVES_TZ 1 >| #define HAVE_STAT_ST_BLOCKS 1 >| #define HAVE_IOCTL 1 >| #define HAVE_TIOCGWINSZ 1 >| #define HAVE_TIOCGETD 1 >| #define HAVE_ALARM 1 >| #define HAVE_FORK 1 >| #define HAVE_FREXPF 1 >| #define HAVE_FREXPL 1 >| #define HAVE_GETHOSTNAME 1 >| #define HAVE_GETPWUID 1 >| #define HAVE_GETRUSAGE 1 >| #define HAVE_LSTAT 1 >| #define HAVE_RAND_R 1 >| #define HAVE_RANDOM 1 >| #define HAVE_SIGNAL 1 >| #define HAVE_LONGJMP 1 >| #define HAVE_SETJMP 1 >| #define HAVE_SIGLONGJMP 1 >| #define HAVE_SIGPROCMASK 1 >| #define HAVE_SNPRINTF 1 >| #define HAVE_SRANDOM 1 >| #define HAVE_STRDUP 1 >| #define HAVE_SYMLINK 1 >| #define HAVE_SYSTEM 1 >| #define HAVE_TMPFILE 1 >| #define HAVE_VASPRINTF 1 >| #define HAVE_WAITPID 1 >| #define HAVE_VSNPRINTF 1 >| #define VSNPRINTF_WORKS 1 >| #define HAVE_ATTRIBUTE 1 >| #define HAVE_C99_FUNC 1 >| #define HAVE_FUNCTION 1 >| #define HAVE_C99_DESIGNATED_INITIALIZER 1 >| #define PRINTF_LL_WIDTH "l" >| #define SYSTEM_SCOPE_THREADS 1 >| #define CLEAR_MEMORY 1 >| /* end confdefs.h. */ >| >| /* Override any GCC internal prototype to avoid an error. >| Use char because int might match the return type of a GCC >| builtin and then its argument prototype would still apply. */ >| #ifdef __cplusplus >| extern "C" >| #endif >| char MPI_File_open (); >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| return MPI_File_open (); >| ; >| return 0; >| } >configure:26916: result: no >configure:27107: checking prefix for running on one processor >configure:27109: result: none >configure:27111: checking prefix for running in parallel >configure:27113: result: /usr/bin/mpiexec -n $${NPROCS:=6} >configure:27116: checking whether a simple MPI-IO program can be linked >configure:27137: mpicc -o conftest -march=native -O2 -pipe -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE -Wl,-O1 -Wl,--as-needed conftest.c -lpthread -lsz -lz -lm >&5 >/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp/ccOawuNx.o: In function `main': >conftest.c:(.text+0xe): undefined reference to `MPI_File_open' >collect2: ld returned 1 exit status >configure:27137: $? = 1 >configure: failed program was: >| /* confdefs.h */ >| #define PACKAGE_NAME "HDF5" >| #define PACKAGE_TARNAME "hdf5" >| #define PACKAGE_VERSION "1.8.6" >| #define PACKAGE_STRING "HDF5 1.8.6" >| #define PACKAGE_BUGREPORT "help@hdfgroup.org" >| #define PACKAGE_URL "" >| #define PACKAGE "hdf5" >| #define VERSION "1.8.6" >| #define STDC_HEADERS 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_STDLIB_H 1 >| #define HAVE_STRING_H 1 >| #define HAVE_MEMORY_H 1 >| #define HAVE_STRINGS_H 1 >| #define HAVE_INTTYPES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_DLFCN_H 1 >| #define LT_OBJDIR ".libs/" >| #define HAVE_LIBM 1 >| #define STDC_HEADERS 1 >| #define TIME_WITH_SYS_TIME 1 >| #define HAVE_DIFFTIME 1 >| #define HAVE_GETTIMEOFDAY 1 >| #define HAVE_SYS_RESOURCE_H 1 >| #define HAVE_SYS_TIME_H 1 >| #define HAVE_UNISTD_H 1 >| #define HAVE_SYS_IOCTL_H 1 >| #define HAVE_SYS_STAT_H 1 >| #define HAVE_SYS_SOCKET_H 1 >| #define HAVE_SYS_TYPES_H 1 >| #define HAVE_STDDEF_H 1 >| #define HAVE_SETJMP_H 1 >| #define HAVE_FEATURES_H 1 >| #define HAVE_STDINT_H 1 >| #define HAVE_SYS_TIMEB_H 1 >| #define HAVE_LSEEK64 1 >| #define HAVE_FSEEKO64 1 >| #define HAVE_FTELLO64 1 >| #define HAVE_FTRUNCATE64 1 >| #define HAVE_FSEEKO 1 >| #define HAVE_FTELLO 1 >| #define HAVE_STAT64 1 >| #define HAVE_FSTAT64 1 >| #define SIZEOF_CHAR 1 >| #define SIZEOF_SHORT 2 >| #define SIZEOF_INT 4 >| #define SIZEOF_UNSIGNED 4 >| #define SIZEOF_LONG 8 >| #define SIZEOF_LONG_LONG 8 >| #define SIZEOF___INT64 0 >| #define SIZEOF_FLOAT 4 >| #define SIZEOF_DOUBLE 8 >| #define SIZEOF_LONG_DOUBLE 16 >| #include <sys/types.h> >| #include <stdint.h> >| #define SIZEOF_INT8_T 1 >| #define SIZEOF_UINT8_T 1 >| #define SIZEOF_INT_LEAST8_T 1 >| #define SIZEOF_UINT_LEAST8_T 1 >| #define SIZEOF_INT_FAST8_T 1 >| #define SIZEOF_UINT_FAST8_T 1 >| #define SIZEOF_INT16_T 2 >| #define SIZEOF_UINT16_T 2 >| #define SIZEOF_INT_LEAST16_T 2 >| #define SIZEOF_UINT_LEAST16_T 2 >| #define SIZEOF_INT_FAST16_T 8 >| #define SIZEOF_UINT_FAST16_T 8 >| #define SIZEOF_INT32_T 4 >| #define SIZEOF_UINT32_T 4 >| #define SIZEOF_INT_LEAST32_T 4 >| #define SIZEOF_UINT_LEAST32_T 4 >| #define SIZEOF_INT_FAST32_T 8 >| #define SIZEOF_UINT_FAST32_T 8 >| #define SIZEOF_INT64_T 8 >| #define SIZEOF_UINT64_T 8 >| #define SIZEOF_INT_LEAST64_T 8 >| #define SIZEOF_UINT_LEAST64_T 8 >| #define SIZEOF_INT_FAST64_T 8 >| #define SIZEOF_UINT_FAST64_T 8 >| #define SIZEOF_SIZE_T 8 >| #define SIZEOF_SSIZE_T 8 >| #define SIZEOF_PTRDIFF_T 8 >| #include <sys/types.h> /*for off_t definition*/ >| #define SIZEOF_OFF_T 8 >| #define SIZEOF_OFF64_T 8 >| #define DEV_T_IS_SCALAR 1 >| #define HAVE_ZLIB_H 1 >| #define HAVE_LIBZ 1 >| #define HAVE_FILTER_DEFLATE 1 >| #define HAVE_SZLIB_H 1 >| #define HAVE_LIBSZ 1 >| #define HAVE_FILTER_SZIP 1 >| #define HAVE_PTHREAD_H 1 >| #define HAVE_LIBPTHREAD 1 >| #define HAVE_TM_GMTOFF 1 >| #define HAVE_STRUCT_TM_TM_ZONE 1 >| #define HAVE_TM_ZONE 1 >| #define HAVE_STRUCT_TIMEZONE 1 >| #define GETTIMEOFDAY_GIVES_TZ 1 >| #define HAVE_STAT_ST_BLOCKS 1 >| #define HAVE_IOCTL 1 >| #define HAVE_TIOCGWINSZ 1 >| #define HAVE_TIOCGETD 1 >| #define HAVE_ALARM 1 >| #define HAVE_FORK 1 >| #define HAVE_FREXPF 1 >| #define HAVE_FREXPL 1 >| #define HAVE_GETHOSTNAME 1 >| #define HAVE_GETPWUID 1 >| #define HAVE_GETRUSAGE 1 >| #define HAVE_LSTAT 1 >| #define HAVE_RAND_R 1 >| #define HAVE_RANDOM 1 >| #define HAVE_SIGNAL 1 >| #define HAVE_LONGJMP 1 >| #define HAVE_SETJMP 1 >| #define HAVE_SIGLONGJMP 1 >| #define HAVE_SIGPROCMASK 1 >| #define HAVE_SNPRINTF 1 >| #define HAVE_SRANDOM 1 >| #define HAVE_STRDUP 1 >| #define HAVE_SYMLINK 1 >| #define HAVE_SYSTEM 1 >| #define HAVE_TMPFILE 1 >| #define HAVE_VASPRINTF 1 >| #define HAVE_WAITPID 1 >| #define HAVE_VSNPRINTF 1 >| #define VSNPRINTF_WORKS 1 >| #define HAVE_ATTRIBUTE 1 >| #define HAVE_C99_FUNC 1 >| #define HAVE_FUNCTION 1 >| #define HAVE_C99_DESIGNATED_INITIALIZER 1 >| #define PRINTF_LL_WIDTH "l" >| #define SYSTEM_SCOPE_THREADS 1 >| #define CLEAR_MEMORY 1 >| #define HAVE_PARALLEL 1 >| /* end confdefs.h. */ >| >| #ifdef FC_DUMMY_MAIN >| #ifndef FC_DUMMY_MAIN_EQ_F77 >| # ifdef __cplusplus >| extern "C" >| # endif >| int FC_DUMMY_MAIN() { return 1; } >| #endif >| #endif >| int >| main () >| { >| MPI_Init(); MPI_File_open(); >| ; >| return 0; >| } >configure:27141: result: no >configure:27143: error: unable to link a simple MPI-IO application > >## ---------------- ## >## Cache variables. ## >## ---------------- ## > >ac_cv_build=x86_64-pc-linux-gnu >ac_cv_c_bigendian=no >ac_cv_c_compiler_gnu=yes >ac_cv_c_const=yes >ac_cv_c_inline=inline >ac_cv_cxx_compiler_gnu=yes >ac_cv_env_CCC_set= >ac_cv_env_CCC_value= >ac_cv_env_CC_set=set >ac_cv_env_CC_value=mpicc >ac_cv_env_CFLAGS_set=set >ac_cv_env_CFLAGS_value='-march=native -O2 -pipe' >ac_cv_env_CPPFLAGS_set= >ac_cv_env_CPPFLAGS_value= >ac_cv_env_CPP_set= >ac_cv_env_CPP_value= >ac_cv_env_CXXCPP_set= >ac_cv_env_CXXCPP_value= >ac_cv_env_CXXFLAGS_set=set >ac_cv_env_CXXFLAGS_value='-march=native -O2 -pipe' >ac_cv_env_CXX_set= >ac_cv_env_CXX_value= >ac_cv_env_FCFLAGS_set=set >ac_cv_env_FCFLAGS_value= >ac_cv_env_FC_set= >ac_cv_env_FC_value= >ac_cv_env_LDFLAGS_set=set >ac_cv_env_LDFLAGS_value='-Wl,-O1 -Wl,--as-needed' >ac_cv_env_LIBS_set= >ac_cv_env_LIBS_value= >ac_cv_env_build_alias_set=set >ac_cv_env_build_alias_value=x86_64-pc-linux-gnu >ac_cv_env_host_alias_set=set >ac_cv_env_host_alias_value=x86_64-pc-linux-gnu >ac_cv_env_target_alias_set= >ac_cv_env_target_alias_value= >ac_cv_func_BSDgettimeofday=no >ac_cv_func_GetConsoleScreenBufferInfo=no >ac_cv_func__getvideoconfig=no >ac_cv_func__scrsize=no >ac_cv_func_alarm=yes >ac_cv_func_compress2=yes >ac_cv_func_difftime=yes >ac_cv_func_dlopen=no >ac_cv_func_fork=yes >ac_cv_func_frexpf=yes >ac_cv_func_frexpl=yes >ac_cv_func_fseeko64=yes >ac_cv_func_fseeko=yes >ac_cv_func_fstat64=yes >ac_cv_func_ftello64=yes >ac_cv_func_ftello=yes >ac_cv_func_ftruncate64=yes >ac_cv_func_gethostname=yes >ac_cv_func_getpwuid=yes >ac_cv_func_getrusage=yes >ac_cv_func_gettextinfo=no >ac_cv_func_gettimeofday=yes >ac_cv_func_ioctl=yes >ac_cv_func_longjmp=yes >ac_cv_func_lseek64=yes >ac_cv_func_lstat=yes >ac_cv_func_rand_r=yes >ac_cv_func_random=yes >ac_cv_func_setjmp=yes >ac_cv_func_setsysinfo=no >ac_cv_func_shl_load=no >ac_cv_func_siglongjmp=yes >ac_cv_func_signal=yes >ac_cv_func_sigprocmask=yes >ac_cv_func_sigsetjmp=no >ac_cv_func_snprintf=yes >ac_cv_func_srandom=yes >ac_cv_func_stat64=yes >ac_cv_func_strdup=yes >ac_cv_func_symlink=yes >ac_cv_func_system=yes >ac_cv_func_tmpfile=yes >ac_cv_func_vasprintf=yes >ac_cv_func_vsnprintf=yes >ac_cv_func_waitpid=yes >ac_cv_header_dlfcn_h=yes >ac_cv_header_features_h=yes >ac_cv_header_inttypes_h=yes >ac_cv_header_io_h=no >ac_cv_header_memory_h=yes >ac_cv_header_pthread_h=yes >ac_cv_header_setjmp_h=yes >ac_cv_header_stdc=yes >ac_cv_header_stddef_h=yes >ac_cv_header_stdint_h=yes >ac_cv_header_stdlib_h=yes >ac_cv_header_string_h=yes >ac_cv_header_strings_h=yes >ac_cv_header_sys_ioctl_h=yes >ac_cv_header_sys_resource_h=yes >ac_cv_header_sys_socket_h=yes >ac_cv_header_sys_stat_h=yes >ac_cv_header_sys_time_h=yes >ac_cv_header_sys_timeb_h=yes >ac_cv_header_sys_types_h=yes >ac_cv_header_szlib_h=yes >ac_cv_header_time=yes >ac_cv_header_unistd_h=yes >ac_cv_header_winsock_h=no >ac_cv_header_zlib_h=yes >ac_cv_host=x86_64-pc-linux-gnu >ac_cv_lib_dl_dlopen=yes >ac_cv_lib_dld_shl_load=no >ac_cv_lib_m_ceil=yes >ac_cv_lib_mpio_MPI_File_open=no >ac_cv_lib_pthread_pthread_create=yes >ac_cv_lib_sz_SZ_BufftoBuffCompress=yes >ac_cv_lib_z_compress2=yes >ac_cv_member_struct_tm_tm_zone=yes >ac_cv_objext=o >ac_cv_path_EGREP='/bin/grep -E' >ac_cv_path_FGREP='/bin/grep -F' >ac_cv_path_GREP=/bin/grep >ac_cv_path_SED=/bin/sed >ac_cv_path_TR=/usr/bin/tr >ac_cv_path_install='/usr/bin/install -c' >ac_cv_path_mkdir=/bin/mkdir >ac_cv_prog_AR=ar >ac_cv_prog_AWK=gawk >ac_cv_prog_CC=mpicc >ac_cv_prog_CPP='mpicc -E' >ac_cv_prog_CXXCPP='g++ -E' >ac_cv_prog_OBJDUMP=x86_64-pc-linux-gnu-objdump >ac_cv_prog_PERL=perl >ac_cv_prog_RANLIB=x86_64-pc-linux-gnu-ranlib >ac_cv_prog_STRIP=x86_64-pc-linux-gnu-strip >ac_cv_prog_cc_c89= >ac_cv_prog_cc_g=yes >ac_cv_prog_cxx_g=yes >ac_cv_prog_make_make_set=yes >ac_cv_sizeof___int64=0 >ac_cv_sizeof_char=1 >ac_cv_sizeof_double=8 >ac_cv_sizeof_float=4 >ac_cv_sizeof_int16_t=2 >ac_cv_sizeof_int32_t=4 >ac_cv_sizeof_int64_t=8 >ac_cv_sizeof_int8_t=1 >ac_cv_sizeof_int=4 >ac_cv_sizeof_int_fast16_t=8 >ac_cv_sizeof_int_fast32_t=8 >ac_cv_sizeof_int_fast64_t=8 >ac_cv_sizeof_int_fast8_t=1 >ac_cv_sizeof_int_least16_t=2 >ac_cv_sizeof_int_least32_t=4 >ac_cv_sizeof_int_least64_t=8 >ac_cv_sizeof_int_least8_t=1 >ac_cv_sizeof_long=8 >ac_cv_sizeof_long_double=16 >ac_cv_sizeof_long_long=8 >ac_cv_sizeof_off64_t=8 >ac_cv_sizeof_off_t=8 >ac_cv_sizeof_ptrdiff_t=8 >ac_cv_sizeof_short=2 >ac_cv_sizeof_size_t=8 >ac_cv_sizeof_ssize_t=8 >ac_cv_sizeof_uint16_t=2 >ac_cv_sizeof_uint32_t=4 >ac_cv_sizeof_uint64_t=8 >ac_cv_sizeof_uint8_t=1 >ac_cv_sizeof_uint_fast16_t=8 >ac_cv_sizeof_uint_fast32_t=8 >ac_cv_sizeof_uint_fast64_t=8 >ac_cv_sizeof_uint_fast8_t=1 >ac_cv_sizeof_uint_least16_t=2 >ac_cv_sizeof_uint_least32_t=4 >ac_cv_sizeof_uint_least64_t=8 >ac_cv_sizeof_uint_least8_t=1 >ac_cv_sizeof_unsigned=4 >ac_cv_struct_tm=time.h >ac_cv_sys_file_offset_bits=no >ac_cv_sys_largefile_CC=no >ac_cv_type_off_t=yes >ac_cv_type_ptrdiff_t=yes >ac_cv_type_size_t=yes >ac_cv_type_ssize_t=yes >am_cv_CC_dependencies_compiler_type=gcc3 >am_cv_CXX_dependencies_compiler_type=gcc3 >hdf5_cv_gettimeofday_tz=yes >hdf5_cv_have_lfs=yes >hdf5_cv_host=x86_64-pc-linux-gnu >hdf5_cv_lone_colon=yes >hdf5_cv_mpi_complex_derived_datatype_works=no >hdf5_cv_mpi_special_collective_io_works=no >hdf5_cv_printf_ll=l >hdf5_cv_system_scope_threads=yes >hdf5_cv_szlib_can_encode=yes >hdf5_cv_vsnprintf_works=yes >lt_cv_ar_at_file=@ >lt_cv_archive_cmds_need_lc=yes >lt_cv_deplibs_check_method=pass_all >lt_cv_dlopen=dlopen >lt_cv_dlopen_libs=-ldl >lt_cv_dlopen_self=yes >lt_cv_dlopen_self_static=yes >lt_cv_file_magic_cmd='$MAGIC_CMD' >lt_cv_file_magic_test_file= >lt_cv_ld_reload_flag=-r >lt_cv_nm_interface='BSD nm' >lt_cv_objdir=.libs >lt_cv_path_LD=/usr/x86_64-pc-linux-gnu/bin/ld >lt_cv_path_NM='/usr/bin/nm -B' >lt_cv_path_mainfest_tool=no >lt_cv_prog_compiler_c_o=yes >lt_cv_prog_compiler_pic='-fPIC -DPIC' >lt_cv_prog_compiler_pic_works=yes >lt_cv_prog_compiler_rtti_exceptions=no >lt_cv_prog_compiler_static_works=no >lt_cv_prog_gnu_ld=yes >lt_cv_sharedlib_from_linklib_cmd='printf %s\n' >lt_cv_shlibpath_overrides_runpath=yes >lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' >lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' >lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' >lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' >lt_cv_sys_max_cmd_len=1572864 >lt_cv_to_host_file_cmd=func_convert_file_noop >lt_cv_to_tool_file_cmd=func_convert_file_noop > >## ----------------- ## >## Output variables. ## >## ----------------- ## > >ACLOCAL='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/missing --run aclocal-1.11' >ADD_PARALLEL_FILES='no' >AMDEPBACKSLASH='\' >AMDEP_FALSE='#' >AMDEP_TRUE='' >AMTAR='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/missing --run tar' >AM_CFLAGS='' >AM_CPPFLAGS='-D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE ' >AM_CXXFLAGS='' >AM_FCFLAGS='' >AM_LDFLAGS='' >AM_MAKEFLAGS='' >AR='ar' >AUTOCONF='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/missing --run autoconf' >AUTOHEADER='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/missing --run autoheader' >AUTOMAKE='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/missing --run automake-1.11' >AWK='gawk' >BUILD_ALL_CONDITIONAL_FALSE='' >BUILD_ALL_CONDITIONAL_TRUE='' >BUILD_CXX_CONDITIONAL_FALSE='' >BUILD_CXX_CONDITIONAL_TRUE='' >BUILD_FORTRAN_CONDITIONAL_FALSE='' >BUILD_FORTRAN_CONDITIONAL_TRUE='' >BUILD_HDF5_HL_CONDITIONAL_FALSE='' >BUILD_HDF5_HL_CONDITIONAL_TRUE='' >BUILD_PARALLEL_CONDITIONAL_FALSE='' >BUILD_PARALLEL_CONDITIONAL_TRUE='' >BUILD_SZIP_CONDITIONAL_FALSE='#' >BUILD_SZIP_CONDITIONAL_TRUE='' >BYTESEX='' >CC='mpicc' >CCDEPMODE='depmode=gcc3' >CC_VERSION='' >CFLAGS=' -march=native -O2 -pipe' >CLEARFILEBUF='yes' >CODESTACK='no' >CONFIG_DATE='' >CONFIG_MODE='production' >CONFIG_USER='' >CPP='mpicc -E' >CPPFLAGS='-D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE ' >CXX='no' >CXXCPP='g++ -E' >CXXDEPMODE='depmode=gcc3' >CXXFLAGS=' -march=native -O2 -pipe' >CXX_SHARED_CONDITIONAL_FALSE='' >CXX_SHARED_CONDITIONAL_TRUE='#' >CXX_VERSION='' >CYGPATH_W='echo' >DEBUG_PKG='' >DEFAULT_API_VERSION='' >DEFS='' >DEPDIR='.deps' >DEPRECATED_SYMBOLS='' >DIRECT_VFD='no' >DIRECT_VFD_CONDITIONAL_FALSE='' >DIRECT_VFD_CONDITIONAL_TRUE='' >DLLTOOL='false' >DSYMUTIL='' >DUMPBIN='' >DYNAMIC_DIRS='' >ECHO_C='' >ECHO_N='-n' >ECHO_T='' >EGREP='/bin/grep -E' >EXEEXT='' >EXTERNAL_FILTERS='deflate(zlib),szip(encoder)' >F9XMODEXT='' >F9XMODFLAG='' >F9XSUFFIXFLAG='' >FC='no' >FCFLAGS=' ' >FCFLAGS_f90='' >FCLIBS='' >FC_VERSION='' >FGREP='/bin/grep -F' >FILTERS='' >FORTRAN_DEFAULT_REALisDBLE_F_FALSE='' >FORTRAN_DEFAULT_REALisDBLE_F_TRUE='#' >FORTRAN_HAVE_SIZEOF_FALSE='' >FORTRAN_HAVE_SIZEOF_TRUE='#' >FORTRAN_SHARED_CONDITIONAL_FALSE='' >FORTRAN_SHARED_CONDITIONAL_TRUE='#' >FSEARCH_DIRS='' >GPFS='no' >GREP='/bin/grep' >H5_CFLAGS=' ' >H5_CPPFLAGS='-D_POSIX_SOURCE -DNDEBUG -UH5_DEBUG_API' >H5_CXXFLAGS=' ' >H5_FCFLAGS=' ' >H5_LONE_COLON='yes' >H5_VERSION='' >HADDR_T='' >HAVE_DMALLOC='no' >HDF5_HL='yes' >HDF5_INTERFACES='' >HDF_CXX='no' >HDF_FORTRAN='no' >HID_T='' >HL='' >HL_FOR='' >HSIZE_T='' >HSSIZE_T='' >INSTALL_DATA='${INSTALL} -m 644' >INSTALL_PROGRAM='${INSTALL}' >INSTALL_SCRIPT='${INSTALL}' >INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' >INSTRUMENT='no' >INSTRUMENT_LIBRARY='no' >LARGEFILE='yes' >LD='/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64' >LDFLAGS=' -Wl,-O1 -Wl,--as-needed' >LIBOBJS='' >LIBS='-lpthread -lsz -lz -lm ' >LIBTOOL='$(SHELL) $(top_builddir)/libtool' >LIPO='' >LL_PATH='' >LN_S='ln -s' >LTLIBOBJS='' >LT_STATIC_EXEC='' >MAINT='#' >MAINTAINER_MODE_FALSE='' >MAINTAINER_MODE_TRUE='#' >MAKEINFO='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/missing --run makeinfo' >MANIFEST_TOOL=':' >MKDIR_P='/bin/mkdir -p' >MPE='no' >MPI_GET_SIZE='' >NM='/usr/bin/nm -B' >NMEDIT='' >OBJDUMP='x86_64-pc-linux-gnu-objdump' >OBJECT_NAMELEN_DEFAULT_F='' >OBJEXT='o' >OTOOL64='' >OTOOL='' >PACKAGE='hdf5' >PACKAGE_BUGREPORT='help@hdfgroup.org' >PACKAGE_NAME='HDF5' >PACKAGE_STRING='HDF5 1.8.6' >PACKAGE_TARNAME='hdf5' >PACKAGE_URL='' >PACKAGE_VERSION='1.8.6' >PACKED_BITS='yes' >PARALLEL='no' >PATH_SEPARATOR=':' >PERL='perl' >PTHREAD='yes' >RANLIB='x86_64-pc-linux-gnu-ranlib' >ROOT='/' >RUNPARALLEL='/usr/bin/mpiexec -n $${NPROCS:=6}' >RUNSERIAL='none' >R_INTEGER='' >R_LARGE='' >SEARCH='' >SED='/bin/sed' >SETX='' >SET_MAKE='' >SHELL='/bin/sh' >SIZE_T='' >STATIC_EXEC='no' >STATIC_SHARED='' >STRICT_FORMAT_CHECKS='' >STRIP='x86_64-pc-linux-gnu-strip' >TESTPARALLEL='testpar' >THREADSAFE='no' >TIME='time' >TR='/usr/bin/tr' >TRACE_API='no' >UNAME_INFO='Linux tiger 2.6.38-gentoo-r4 #1 SMP PREEMPT Wed May 4 15:41:52 CEST 2011 x86_64 Intel(R) Core(TM) i7 CPU Q 720 @ 1.60GHz GenuineIntel GNU/Linux' >USE_FILTER_DEFLATE='yes' >USE_FILTER_FLETCHER32='' >USE_FILTER_NBIT='' >USE_FILTER_SCALEOFFSET='' >USE_FILTER_SHUFFLE='' >USE_FILTER_SZIP='yes' >USINGMEMCHECKER='no' >VERSION='1.8.6' >WORDS_BIGENDIAN='' >ac_ct_AR='' >ac_ct_CC='' >ac_ct_CXX='' >ac_ct_DUMPBIN='' >ac_ct_FC='' >am__EXEEXT_FALSE='' >am__EXEEXT_TRUE='' >am__fastdepCC_FALSE='#' >am__fastdepCC_TRUE='' >am__fastdepCXX_FALSE='#' >am__fastdepCXX_TRUE='' >am__include='include' >am__isrc='' >am__leading_dot='.' >am__quote='' >am__tar='${AMTAR} chof - "$$tardir"' >am__untar='${AMTAR} xf -' >bindir='${exec_prefix}/bin' >build='x86_64-pc-linux-gnu' >build_alias='x86_64-pc-linux-gnu' >build_cpu='x86_64' >build_os='linux-gnu' >build_vendor='pc' >datadir='/usr/share' >datarootdir='${prefix}/share' >docdir='/usr/share/doc/hdf5-1.8.6' >dvidir='${docdir}' >enable_shared='yes' >enable_static='yes' >exec_prefix='NONE' >host='x86_64-pc-linux-gnu' >host_alias='x86_64-pc-linux-gnu' >host_cpu='x86_64' >host_os='linux-gnu' >host_vendor='pc' >htmldir='${docdir}' >includedir='${prefix}/include' >infodir='/usr/share/info' >install_sh='${SHELL} /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/bin/install-sh' >libdir='/usr/lib64' >libexecdir='${exec_prefix}/libexec' >localedir='${datarootdir}/locale' >localstatedir='/var/lib' >mandir='/usr/share/man' >mkdir_p='/bin/mkdir -p' >oldincludedir='/usr/include' >pdfdir='${docdir}' >prefix='/usr' >program_transform_name='s,x,x,' >psdir='${docdir}' >sbindir='${exec_prefix}/sbin' >sharedstatedir='${prefix}/com' >sysconfdir='/etc' >target_alias='' > >## ----------- ## >## confdefs.h. ## >## ----------- ## > >/* confdefs.h */ >#define PACKAGE_NAME "HDF5" >#define PACKAGE_TARNAME "hdf5" >#define PACKAGE_VERSION "1.8.6" >#define PACKAGE_STRING "HDF5 1.8.6" >#define PACKAGE_BUGREPORT "help@hdfgroup.org" >#define PACKAGE_URL "" >#define PACKAGE "hdf5" >#define VERSION "1.8.6" >#define STDC_HEADERS 1 >#define HAVE_SYS_TYPES_H 1 >#define HAVE_SYS_STAT_H 1 >#define HAVE_STDLIB_H 1 >#define HAVE_STRING_H 1 >#define HAVE_MEMORY_H 1 >#define HAVE_STRINGS_H 1 >#define HAVE_INTTYPES_H 1 >#define HAVE_STDINT_H 1 >#define HAVE_UNISTD_H 1 >#define HAVE_DLFCN_H 1 >#define LT_OBJDIR ".libs/" >#define HAVE_LIBM 1 >#define STDC_HEADERS 1 >#define TIME_WITH_SYS_TIME 1 >#define HAVE_DIFFTIME 1 >#define HAVE_GETTIMEOFDAY 1 >#define HAVE_SYS_RESOURCE_H 1 >#define HAVE_SYS_TIME_H 1 >#define HAVE_UNISTD_H 1 >#define HAVE_SYS_IOCTL_H 1 >#define HAVE_SYS_STAT_H 1 >#define HAVE_SYS_SOCKET_H 1 >#define HAVE_SYS_TYPES_H 1 >#define HAVE_STDDEF_H 1 >#define HAVE_SETJMP_H 1 >#define HAVE_FEATURES_H 1 >#define HAVE_STDINT_H 1 >#define HAVE_SYS_TIMEB_H 1 >#define HAVE_LSEEK64 1 >#define HAVE_FSEEKO64 1 >#define HAVE_FTELLO64 1 >#define HAVE_FTRUNCATE64 1 >#define HAVE_FSEEKO 1 >#define HAVE_FTELLO 1 >#define HAVE_STAT64 1 >#define HAVE_FSTAT64 1 >#define SIZEOF_CHAR 1 >#define SIZEOF_SHORT 2 >#define SIZEOF_INT 4 >#define SIZEOF_UNSIGNED 4 >#define SIZEOF_LONG 8 >#define SIZEOF_LONG_LONG 8 >#define SIZEOF___INT64 0 >#define SIZEOF_FLOAT 4 >#define SIZEOF_DOUBLE 8 >#define SIZEOF_LONG_DOUBLE 16 >#include <sys/types.h> >#include <stdint.h> >#define SIZEOF_INT8_T 1 >#define SIZEOF_UINT8_T 1 >#define SIZEOF_INT_LEAST8_T 1 >#define SIZEOF_UINT_LEAST8_T 1 >#define SIZEOF_INT_FAST8_T 1 >#define SIZEOF_UINT_FAST8_T 1 >#define SIZEOF_INT16_T 2 >#define SIZEOF_UINT16_T 2 >#define SIZEOF_INT_LEAST16_T 2 >#define SIZEOF_UINT_LEAST16_T 2 >#define SIZEOF_INT_FAST16_T 8 >#define SIZEOF_UINT_FAST16_T 8 >#define SIZEOF_INT32_T 4 >#define SIZEOF_UINT32_T 4 >#define SIZEOF_INT_LEAST32_T 4 >#define SIZEOF_UINT_LEAST32_T 4 >#define SIZEOF_INT_FAST32_T 8 >#define SIZEOF_UINT_FAST32_T 8 >#define SIZEOF_INT64_T 8 >#define SIZEOF_UINT64_T 8 >#define SIZEOF_INT_LEAST64_T 8 >#define SIZEOF_UINT_LEAST64_T 8 >#define SIZEOF_INT_FAST64_T 8 >#define SIZEOF_UINT_FAST64_T 8 >#define SIZEOF_SIZE_T 8 >#define SIZEOF_SSIZE_T 8 >#define SIZEOF_PTRDIFF_T 8 >#include <sys/types.h> /*for off_t definition*/ >#define SIZEOF_OFF_T 8 >#define SIZEOF_OFF64_T 8 >#define DEV_T_IS_SCALAR 1 >#define HAVE_ZLIB_H 1 >#define HAVE_LIBZ 1 >#define HAVE_FILTER_DEFLATE 1 >#define HAVE_SZLIB_H 1 >#define HAVE_LIBSZ 1 >#define HAVE_FILTER_SZIP 1 >#define HAVE_PTHREAD_H 1 >#define HAVE_LIBPTHREAD 1 >#define HAVE_TM_GMTOFF 1 >#define HAVE_STRUCT_TM_TM_ZONE 1 >#define HAVE_TM_ZONE 1 >#define HAVE_STRUCT_TIMEZONE 1 >#define GETTIMEOFDAY_GIVES_TZ 1 >#define HAVE_STAT_ST_BLOCKS 1 >#define HAVE_IOCTL 1 >#define HAVE_TIOCGWINSZ 1 >#define HAVE_TIOCGETD 1 >#define HAVE_ALARM 1 >#define HAVE_FORK 1 >#define HAVE_FREXPF 1 >#define HAVE_FREXPL 1 >#define HAVE_GETHOSTNAME 1 >#define HAVE_GETPWUID 1 >#define HAVE_GETRUSAGE 1 >#define HAVE_LSTAT 1 >#define HAVE_RAND_R 1 >#define HAVE_RANDOM 1 >#define HAVE_SIGNAL 1 >#define HAVE_LONGJMP 1 >#define HAVE_SETJMP 1 >#define HAVE_SIGLONGJMP 1 >#define HAVE_SIGPROCMASK 1 >#define HAVE_SNPRINTF 1 >#define HAVE_SRANDOM 1 >#define HAVE_STRDUP 1 >#define HAVE_SYMLINK 1 >#define HAVE_SYSTEM 1 >#define HAVE_TMPFILE 1 >#define HAVE_VASPRINTF 1 >#define HAVE_WAITPID 1 >#define HAVE_VSNPRINTF 1 >#define VSNPRINTF_WORKS 1 >#define HAVE_ATTRIBUTE 1 >#define HAVE_C99_FUNC 1 >#define HAVE_FUNCTION 1 >#define HAVE_C99_DESIGNATED_INITIALIZER 1 >#define PRINTF_LL_WIDTH "l" >#define SYSTEM_SCOPE_THREADS 1 >#define CLEAR_MEMORY 1 >#define HAVE_PARALLEL 1 > >configure: exit 1
<b>You cannot view the attachment while viewing its details because your browser does not support IFRAMEs. <a href="attachment.cgi?id=272139">View the attachment on a separate page</a>.</b>
View Attachment As Raw
Actions:
View
Attachments on
bug 366009
:
272131
| 272139
