build log

build.log (text/plain), 15.74 KB, created by Eugene Shalygin on 2011-05-04 21:17:45 UTC

[32;01m * [39;49;00mPackage:    sci-libs/hdf5-1.8.6
[32;01m * [39;49;00mRepository: gentoo
[32;01m * [39;49;00mMaintainer: [e-mail]
[32;01m * [39;49;00mUSE:        amd64 consolekit elibc_glibc kernel_linux mpi multilib policykit szip threads userland_GNU zlib
[32;01m * [39;49;00mFEATURES:   preserve-libs sandbox userpriv
>>> Unpacking source...
>>> Unpacking hdf5-1.8.6.tar.bz2 to /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work
>>> Source unpacked in /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work
>>> Preparing source in /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6 ...
 [32;01m*[0m Applying hdf5-1.8.3-as-needed.patch ...
[A[182C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying hdf5-1.8.5-implicits.patch ...
[A[182C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying hdf5-1.8.5-noreturn.patch ...
[A[182C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying hdf5-1.8.4-scaleoffset.patch ...
[A[182C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running eautoreconf in '/var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6' ...
 [32;01m*[0m Running aclocal ...
[A[182C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running libtoolize --copy --force --install --automake ...
[A[182C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running aclocal ...
[A[182C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running autoconf ...
[A[182C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running autoheader ...
[A[182C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running automake --add-missing --copy --foreign ...
[A[182C [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running elibtoolize in: hdf5-1.8.6/bin/
 [32;01m*[0m   Applying portage-1.2.0.patch ...
 [32;01m*[0m   Applying sed-1.5.6.patch ...
 [32;01m*[0m   Applying as-needed-2.2.6.patch ...
>>> Source prepared.
>>> Configuring source in /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6 ...
 * econf: updating hdf5-1.8.6/bin/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating hdf5-1.8.6/bin/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --disable-sharedlib-rpath --enable-production --docdir=/usr/share/doc/hdf5-1.8.6 --enable-deprecated-symbols --enable-shared --disable-debug --disable-fortran --enable-parallel --with-szlib --with-pthread --with-zlib --disable-threadsafe --disable-cxx
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking whether to enable maintainer-specific portions of Makefiles... no
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking shell variables initial values... done
checking if basename works... yes
checking if xargs works... yes
checking for cached host... none
checking for config x86_64-pc-linux-gnu... no
checking for config x86_64-pc-linux-gnu... no
checking for config pc-linux-gnu... no
checking for config pc-linux-gnu... no
checking for config x86_64-linux-gnu... no
checking for config x86_64-linux-gnu... no
checking for config x86_64-pc... no
checking for config linux-gnu... found
CC_BASENAME is mpicc.
No match to get fc_version_info for mpif90
checking for config ./config/site-specific/host-tiger... no
checking for x86_64-pc-linux-gnu-gcc... mpicc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether mpicc accepts -g... yes
checking for mpicc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of mpicc... gcc3
checking if Fortran interface enabled... no
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking how to run the C++ preprocessor... g++ -E
checking if c++ interface enabled... no
checking for perl... perl
checking for ar... ar
checking whether make sets $(MAKE)... (cached) yes
checking for tr... /usr/bin/tr
checking if srcdir= and time commands work together... yes
checking for mpiexec... /usr/bin/mpiexec
    shared libraries explicitly enabled by user
checking how to print strings... printf
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by mpicc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop
checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-dlltool... no
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for x86_64-pc-linux-gnu-ar... (cached) ar
checking for archiver @FILE support... @
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking command to parse /usr/bin/nm -B output from mpicc object... ok
checking for sysroot... no
checking for x86_64-pc-linux-gnu-mt... no
checking for mt... no
checking if : is a manifest tool... no
checking how to run the C preprocessor... mpicc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if mpicc supports -fno-rtti -fno-exceptions... no
checking for mpicc option to produce PIC... -fPIC -DPIC
checking if mpicc PIC flag -fPIC -DPIC works... yes
checking if mpicc static flag -static works... no
checking if mpicc supports -c -o file.o... yes
checking if mpicc supports -c -o file.o... (cached) yes
checking whether the mpicc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... yes
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking for shl_load... no
checking for shl_load in -ldld... no
checking for dlopen... no
checking for dlopen in -ldl... yes
checking whether a program can dlopen itself... yes
checking whether a statically linked program can dlopen itself... yes
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
fixing $wl in libtool
checking if we should install only statically linked executables... no
checking if -Wl,-rpath should be used to link shared libs in nondefault directories... no
checking make... checking how make searches directories... VPATH=DIR1 DIR2 ...
checking whether make will build with undefined variables... yes
checking for production mode... production
checking for ceil in -lm... yes
checking for ANSI C header files... (cached) yes
checking whether time.h and sys/time.h may both be included... yes
checking for difftime... yes
checking for gettimeofday... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for unistd.h... (cached) yes
checking sys/ioctl.h usability... yes
checking sys/ioctl.h presence... yes
checking for sys/ioctl.h... yes
checking for sys/stat.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for sys/types.h... (cached) yes
checking stddef.h usability... yes
checking stddef.h presence... yes
checking for stddef.h... yes
checking setjmp.h usability... yes
checking setjmp.h presence... yes
checking for setjmp.h... yes
checking features.h usability... yes
checking features.h presence... yes
checking for features.h... yes
checking for stdint.h... (cached) yes
checking io.h usability... no
checking io.h presence... no
checking for io.h... no
checking winsock.h usability... no
checking winsock.h presence... no
checking for winsock.h... no
checking sys/timeb.h usability... yes
checking sys/timeb.h presence... yes
checking for sys/timeb.h... yes
checking if configure should try to set up large file support... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
checking if large (64-bit) files are supported on this system.... yes
checking for lseek64... yes
checking for fseeko64... yes
checking for ftello64... yes
checking for ftruncate64... yes
checking for fseeko... yes
checking for ftello... yes
checking for stat64... yes
checking for fstat64... yes
checking for off_t... yes
checking for size_t... yes
checking for ssize_t... yes
checking for ptrdiff_t... yes
checking whether byte ordering is bigendian... no
checking size of char... 1
checking size of short... 2
checking size of int... 4
checking size of unsigned... 4
checking size of long... 8
checking size of long long... 8
checking size of __int64... 0
checking size of float... 4
checking size of double... 8
checking size of long double... 16
checking size of int8_t... 1
checking size of uint8_t... 1
checking size of int_least8_t... 1
checking size of uint_least8_t... 1
checking size of int_fast8_t... 1
checking size of uint_fast8_t... 1
checking size of int16_t... 2
checking size of uint16_t... 2
checking size of int_least16_t... 2
checking size of uint_least16_t... 2
checking size of int_fast16_t... 8
checking size of uint_fast16_t... 8
checking size of int32_t... 4
checking size of uint32_t... 4
checking size of int_least32_t... 4
checking size of uint_least32_t... 4
checking size of int_fast32_t... 8
checking size of uint_fast32_t... 8
checking size of int64_t... 8
checking size of uint64_t... 8
checking size of int_least64_t... 8
checking size of uint_least64_t... 8
checking size of int_fast64_t... 8
checking size of uint_fast64_t... 8
checking size of size_t... 8
checking size of ssize_t... 8
checking size of ptrdiff_t... 8
checking size of off_t... 8
checking size of off64_t... 8
checking if dev_t is scalar... yes
checking for dmalloc library... suppressed
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for compress2 in -lz... yes
checking for compress2... yes
checking szlib.h usability... yes
checking szlib.h presence... yes
checking for szlib.h... yes
checking for SZ_BufftoBuffCompress in -lsz... yes
checking for szlib encoder... yes
checking pthread.h usability... yes
checking pthread.h presence... yes
checking for pthread.h... yes
checking for pthread_create in -lpthread... yes
checking for thread safe support... no
checking for tm_gmtoff in struct tm... yes
checking for __tm_gmtoff in struct tm... no
checking for global timezone variable... no
checking whether struct tm is in sys/time.h or time.h... time.h
checking for struct tm.tm_zone... yes
checking for struct timezone... yes
checking whether gettimeofday() gives timezone... yes
checking for st_blocks in struct stat... yes
checking for _getvideoconfig... no
checking for gettextinfo... no
checking for GetConsoleScreenBufferInfo... no
checking for _scrsize... no
checking for ioctl... yes
checking for struct videoconfig... no
checking for struct text_info... no
checking for TIOCGWINSZ... yes
checking for TIOCGETD... yes
checking for alarm... yes
checking for BSDgettimeofday... no
checking for fork... yes
checking for frexpf... yes
checking for frexpl... yes
checking for gethostname... yes
checking for getpwuid... yes
checking for getrusage... yes
checking for lstat... yes
checking for rand_r... yes
checking for random... yes
checking for setsysinfo... no
checking for signal... yes
checking for longjmp... yes
checking for setjmp... yes
checking for siglongjmp... yes
checking for sigsetjmp... no
checking for sigprocmask... yes
checking for snprintf... yes
checking for srandom... yes
checking for strdup... yes
checking for symlink... yes
checking for system... yes
checking for tmpfile... yes
checking for vasprintf... yes
checking for waitpid... yes
checking for vsnprintf... yes
checking if vsnprintf returns correct value... yes
checking if lone colon can be used as an argument... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for __attribute__ extension... yes
checking for __func__ extension... yes
checking for __FUNCTION__ extension... yes
checking for C99 designated initialization support... yes
checking how to print long long... %ld and %lu
checking Threads support system scope... yes
checking for gpfs... suppressed
checking for debug flags... none
checking whether function stack tracking is enabled... no
checking whether metadata trace file code is enabled... no
checking for API tracing... no
checking for instrumented library... no
checking whether to clear file buffers... yes
checking whether a memory checking tool will be used... no
checking for parallel support files... provided by compiler
checking for MPI_File_open in -lmpio... no
checking prefix for running on one processor... none
checking prefix for running in parallel... /usr/bin/mpiexec -n $${NPROCS:=6}
checking whether a simple MPI-IO program can be linked... no
configure: error: unable to link a simple MPI-IO application

!!! Please attach the following file when seeking support:
!!! /var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6/config.log
 [31;01m*[0m ERROR: sci-libs/hdf5-1.8.6 failed (configure phase):
 [31;01m*[0m   econf failed
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line   56:  Called src_configure
 [31;01m*[0m   environment, line 2759:  Called econf '--disable-sharedlib-rpath' '--enable-production' '--docdir=/usr/share/doc/hdf5-1.8.6' '--enable-deprecated-symbols' '--enable-shared' '--disable-debug' '--disable-fortran' '--enable-parallel' '--with-szlib' '--with-pthread' '--with-zlib' '--disable-threadsafe' '--disable-cxx'
 [31;01m*[0m     ebuild.sh, line  557:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m   			die "econf failed"
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of 'emerge --info =sci-libs/hdf5-1.8.6',
 [31;01m*[0m the complete build log and the output of 'emerge -pqv =sci-libs/hdf5-1.8.6'.
 [31;01m*[0m The complete build log is located at '/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp/build.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/data/tmp/portage/sci-libs/hdf5-1.8.6/temp/environment'.
 [31;01m*[0m S: '/var/data/tmp/portage/sci-libs/hdf5-1.8.6/work/hdf5-1.8.6'