Go to:
Gentoo Home
Documentation
Forums
Lists
Bugs
Planet
Store
Wiki
Get Gentoo!
Gentoo's Bugzilla – Attachment 237055 Details for
Bug 326331
sci-chemistry/gromacs-4.0.7-r3 build warnings / errors
Home
|
New
–
[Ex]
|
Browse
|
Search
|
Privacy Policy
|
[?]
|
Reports
|
Requests
|
Help
|
New Account
|
Log In
[x]
|
Forgot Password
Login:
[x]
Build log for Type 1
build.log.1 (text/plain), 304.98 KB, created by
Dane Smith (RETIRED)
on 2010-06-30 15:49:29 UTC
(
hide
)
Description:
Build log for Type 1
Filename:
MIME Type:
Creator:
Dane Smith (RETIRED)
Created:
2010-06-30 15:49:29 UTC
Size:
304.98 KB
patch
obsolete
> [32;01m*[0m CPV: sci-chemistry/gromacs-4.0.7-r3 > [32;01m*[0m REPO: gentoo > [32;01m*[0m USE: X blas dmalloc doc elibc_glibc fftw kernel_linux lapack mpi single-precision static static-libs test userland_GNU x86 > [32;01m*[0m You need one of these Fortran Compilers: gfortran g77 > [32;01m*[0m Installed are: gfortran >>>> Unpacking source... >>>> Unpacking gromacs-4.0.7.tar.gz to /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work >>>> Unpacking gmxtest-4.0.4.tgz to /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work >>>> Unpacking manual-4.0.pdf to /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work >unpack manual-4.0.pdf: file format not recognized. Ignoring. > [32;01m*[0m Applying patches for selected FORTRAN compiler: gfortran >>>> Source unpacked in /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work >>>> Preparing source in /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7 ... > [32;01m*[0m Applying gromacs-4.0.7_upstream2010-06-08.patch.gz ... >[A[228C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying gromacs-4.0.9999-docdir.patch ... >[A[228C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying gromacs-4.0.9999-ccache.patch ... >[A[228C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7' ... > [32;01m*[0m Running aclocal ... >[A[228C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running true --copy --force --install --automake ... >[A[228C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running aclocal ... >[A[228C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoconf ... >[A[228C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoheader ... >[A[228C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running automake --add-missing --copy --foreign ... >[A[228C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running elibtoolize in: gromacs-4.0.7/config > [32;01m*[0m Applying install-sh-1.5.4.patch ... > [32;01m*[0m Applying portage-1.5.10.patch ... > [32;01m*[0m Applying sed-1.5.6.patch ... > [32;01m*[0m Applying as-needed-1.5.26.patch ... >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7 ... > [32;01m*[0m You have enabled mpi, only mdrun will make use of mpi, that is why > [32;01m*[0m we configure/compile gromacs twice (with and without mpi) and only > [32;01m*[0m install mdrun with mpi support. In addtion you will get libgmx and > [32;01m*[0m libmd with and without mpi support. > [32;01m*[0m Configuring for single precision > * econf: updating gromacs-4.0.7/config/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating gromacs-4.0.7/config/config.guess with /usr/share/gnuconfig/config.guess >/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datadir=/usr/share --bindir=/usr/bin --libdir=/usr/lib --docdir=/usr/share/doc/gromacs-4.0.7-r3 --with-dmalloc --with-fft=fftw3 --without-gsl --with-x --without-xml --disable-bluegene --disable-fortran --with-external-blas --with-external-lapack --enable-all-static --enable-float --program-suffix='' --disable-mpi >checking build system type... i686-pc-linux-gnu >checking host system type... i686-pc-linux-gnu >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking how to create a ustar tar archive... gnutar >checking for i686-pc-linux-gnu-icc... no >checking for i686-pc-linux-gnu-xlc... no >checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether i686-pc-linux-gnu-gcc accepts -g... yes >checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking for style of include used by make... GNU >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E >checking whether i686-pc-linux-gnu-gcc accepts -O3... yes >checking whether i686-pc-linux-gnu-gcc accepts -funroll-all-loops... yes >****************************************** >* Using CFLAGS from environment variable * >****************************************** >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking whether byte ordering is bigendian... no >checking size of int... 4 >checking size of long int... 4 >checking size of long long int... 8 >checking size of off_t... 4 >checking that size_t can hold pointers... yes >checking floating-point format... IEEE754 (little-endian byte and word order) >checking whether ln -s works... yes >checking whether make sets $(MAKE)... (cached) yes >checking for a sed that does not truncate output... /bin/sed >checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r >checking for BSD-compatible nm... /usr/bin/nm -B >checking how to recognise dependent libraries... pass_all >checking dlfcn.h usability... yes >checking dlfcn.h presence... yes >checking for dlfcn.h... yes >checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether i686-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of i686-pc-linux-gnu-g++... gcc3 >checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E >checking the maximum length of command line arguments... 32768 >checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok >checking for objdir... .libs >checking for i686-pc-linux-gnu-ar... i686-pc-linux-gnu-ar >checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib >checking for i686-pc-linux-gnu-strip... i686-pc-linux-gnu-strip >checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-gcc static flag -static works... yes >checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... cat: ld.so.conf.d/*.conf: No such file or directory >GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... no >checking whether to build static libraries... yes >configure: creating libtool >appending configuration tag "CXX" to libtool >checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-g++ static flag -static works... yes >checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... cat: ld.so.conf.d/*.conf: No such file or directory >GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >appending configuration tag "F77" to libtool >checking for special C compiler options needed for large files... no >checking for _FILE_OFFSET_BITS value needed for large files... 64 >checking for _LARGEFILE_SOURCE value needed for large files... no >checking for sqrt in -lm... yes >checking for fftw3.h... yes >checking for main in -lfftw3f... yes >checking rpc/rpc.h usability... yes >checking rpc/rpc.h presence... yes >checking for rpc/rpc.h... yes >checking for rpc/xdr.h... yes >checking for xdr_float in -lnsl... yes >checking for working memcmp... yes >checking return type of signal handlers... void >checking for off_t... yes >checking for vprintf... yes >checking for _doprnt... no >checking if malloc debugging is wanted... yes >checking for strcasecmp... yes >checking for strdup... yes >checking for bool... no >checking size of int... (cached) 4 >checking size of long int... (cached) 4 >checking size of long long int... (cached) 8 >checking size of off_t... (cached) 4 >checking size of void*... 4 >checking for X... libraries , headers >checking for gethostbyname... yes >checking for connect... yes >checking for remove... yes >checking for shmat... yes >checking for IceConnectionNumber in -lICE... yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking for strings.h... (cached) yes >checking for unistd.h... (cached) yes >checking for unistd.h... (cached) yes >checking for an ANSI C-conforming const... yes >checking for size_t... yes >checking whether struct tm is in sys/time.h or time.h... time.h >checking for uid_t in sys/types.h... yes >checking for inline... inline >checking whether your compiler can handle assembly files (*.s)... yes >checking whether as fully supports ia32 SSE... yes >checking whether as fully supports ia32 3DNow! instructions... yes >checking whether byte ordering is bigendian... (cached) no >checking if the compiler supports gcc inline assembly... yes >checking if the compiler supports MSVC inline assembly... no >configure: creating ./config.status >config.status: creating Makefile >config.status: creating src/Makefile >config.status: creating src/gmxlib/Makefile >config.status: creating src/gmxlib/gmx_blas/Makefile >config.status: creating src/gmxlib/gmx_lapack/Makefile >config.status: creating src/gmxlib/nonbonded/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile >config.status: creating include/Makefile >config.status: creating include/types/Makefile >config.status: creating src/mdlib/Makefile >config.status: creating src/kernel/Makefile >config.status: creating src/tools/Makefile >config.status: creating src/ngmx/Makefile >config.status: creating src/contrib/Makefile >config.status: creating scripts/Makefile >config.status: creating admin/Makefile >config.status: creating share/Makefile >config.status: creating share/tutor/Makefile >config.status: creating share/tutor/gmxdemo/Makefile >config.status: creating share/tutor/nmr1/Makefile >config.status: creating share/tutor/nmr2/Makefile >config.status: creating share/tutor/water/Makefile >config.status: creating share/tutor/mixed/Makefile >config.status: creating share/tutor/methanol/Makefile >config.status: creating share/tutor/speptide/Makefile >config.status: creating share/template/Makefile >config.status: creating share/top/Makefile >config.status: creating share/html/Makefile >config.status: creating share/html/images/Makefile >config.status: creating share/html/online/Makefile >config.status: creating man/Makefile >config.status: creating man/man1/Makefile >config.status: creating src/config.h >config.status: executing depfiles commands > >* On most platforms you can save 10X space with dynamic libraries, although > the binaries might be less portable. Why not try --enable-shared ? > > * econf: updating gromacs-4.0.7/config/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating gromacs-4.0.7/config/config.guess with /usr/share/gnuconfig/config.guess >/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --datadir=/usr/share --bindir=/usr/bin --libdir=/usr/lib --docdir=/usr/share/doc/gromacs-4.0.7-r3 --with-dmalloc --with-fft=fftw3 --without-gsl --with-x --without-xml --disable-bluegene --disable-fortran --with-external-blas --with-external-lapack --enable-all-static --enable-float --program-suffix='' --enable-mpi >checking build system type... i686-pc-linux-gnu >checking host system type... i686-pc-linux-gnu >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking how to create a ustar tar archive... gnutar >checking for i686-pc-linux-gnu-icc... no >checking for i686-pc-linux-gnu-xlc... no >checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc >checking whether the C compiler works... yes >checking for C compiler default output file name... a.out >checking for suffix of executables... >checking whether we are cross compiling... no >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether i686-pc-linux-gnu-gcc accepts -g... yes >checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking for style of include used by make... GNU >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking for mpxlc... no >checking for mpicc... mpicc >checking whether the MPI cc command works... yes >checking for catamount... no >checking how to run the C preprocessor... mpicc -E >checking whether mpicc accepts -O3... yes >checking whether mpicc accepts -funroll-all-loops... yes >****************************************** >* Using CFLAGS from environment variable * >****************************************** >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking whether byte ordering is bigendian... no >checking size of int... 4 >checking size of long int... 4 >checking size of long long int... 8 >checking size of off_t... 4 >checking that size_t can hold pointers... yes >checking floating-point format... IEEE754 (little-endian byte and word order) >checking whether ln -s works... yes >checking whether make sets $(MAKE)... (cached) yes >checking for a sed that does not truncate output... /bin/sed >checking for ld used by mpicc... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r >checking for BSD-compatible nm... /usr/bin/nm -B >checking how to recognise dependent libraries... pass_all >checking dlfcn.h usability... yes >checking dlfcn.h presence... yes >checking for dlfcn.h... yes >checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether i686-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of i686-pc-linux-gnu-g++... gcc3 >checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E >checking the maximum length of command line arguments... 32768 >checking command to parse /usr/bin/nm -B output from mpicc object... ok >checking for objdir... .libs >checking for i686-pc-linux-gnu-ar... i686-pc-linux-gnu-ar >checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib >checking for i686-pc-linux-gnu-strip... i686-pc-linux-gnu-strip >checking if mpicc supports -fno-rtti -fno-exceptions... no >checking for mpicc option to produce PIC... -fPIC >checking if mpicc PIC flag -fPIC works... yes >checking if mpicc static flag -static works... no >checking if mpicc supports -c -o file.o... yes >checking whether the mpicc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... cat: ld.so.conf.d/*.conf: No such file or directory >GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... no >checking whether to build static libraries... yes >configure: creating libtool >appending configuration tag "CXX" to libtool >checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-g++ static flag -static works... yes >checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... cat: ld.so.conf.d/*.conf: No such file or directory >GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >appending configuration tag "F77" to libtool >checking for special C compiler options needed for large files... no >checking for _FILE_OFFSET_BITS value needed for large files... 64 >checking for _LARGEFILE_SOURCE value needed for large files... no >checking for sqrt in -lm... yes >checking for fftw3.h... yes >checking for main in -lfftw3f... yes >checking rpc/rpc.h usability... yes >checking rpc/rpc.h presence... yes >checking for rpc/rpc.h... yes >checking for rpc/xdr.h... yes >checking for xdr_float in -lnsl... yes >checking for working memcmp... yes >checking return type of signal handlers... void >checking for off_t... yes >checking for vprintf... yes >checking for _doprnt... no >checking if malloc debugging is wanted... yes >checking for strcasecmp... yes >checking for strdup... yes >checking for bool... no >checking size of int... (cached) 4 >checking size of long int... (cached) 4 >checking size of long long int... (cached) 8 >checking size of off_t... (cached) 4 >checking size of void*... 4 >checking for X... libraries , headers >checking for gethostbyname... yes >checking for connect... yes >checking for remove... yes >checking for shmat... yes >checking for IceConnectionNumber in -lICE... yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking for strings.h... (cached) yes >checking for unistd.h... (cached) yes >checking for unistd.h... (cached) yes >checking for an ANSI C-conforming const... yes >checking for size_t... yes >checking whether struct tm is in sys/time.h or time.h... time.h >checking for uid_t in sys/types.h... yes >checking for inline... inline >checking whether your compiler can handle assembly files (*.s)... yes >checking whether as fully supports ia32 SSE... yes >checking whether as fully supports ia32 3DNow! instructions... yes >checking whether byte ordering is bigendian... (cached) no >checking if the compiler supports gcc inline assembly... yes >checking if the compiler supports MSVC inline assembly... no >configure: creating ./config.status >config.status: creating Makefile >config.status: creating src/Makefile >config.status: creating src/gmxlib/Makefile >config.status: creating src/gmxlib/gmx_blas/Makefile >config.status: creating src/gmxlib/gmx_lapack/Makefile >config.status: creating src/gmxlib/nonbonded/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia32_sse2/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_x86_64_sse2/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ppc_altivec/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_single/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_ia64_double/Makefile >config.status: creating src/gmxlib/nonbonded/nb_kernel_bluegene/Makefile >config.status: creating include/Makefile >config.status: creating include/types/Makefile >config.status: creating src/mdlib/Makefile >config.status: creating src/kernel/Makefile >config.status: creating src/tools/Makefile >config.status: creating src/ngmx/Makefile >config.status: creating src/contrib/Makefile >config.status: creating scripts/Makefile >config.status: creating admin/Makefile >config.status: creating share/Makefile >config.status: creating share/tutor/Makefile >config.status: creating share/tutor/gmxdemo/Makefile >config.status: creating share/tutor/nmr1/Makefile >config.status: creating share/tutor/nmr2/Makefile >config.status: creating share/tutor/water/Makefile >config.status: creating share/tutor/mixed/Makefile >config.status: creating share/tutor/methanol/Makefile >config.status: creating share/tutor/speptide/Makefile >config.status: creating share/template/Makefile >config.status: creating share/top/Makefile >config.status: creating share/html/Makefile >config.status: creating share/html/images/Makefile >config.status: creating share/html/online/Makefile >config.status: creating man/Makefile >config.status: creating man/man1/Makefile >config.status: creating src/config.h >config.status: executing depfiles commands > >* On most platforms you can save 10X space with dynamic libraries, although > the binaries might be less portable. Why not try --enable-shared ? > >>>> Source configured. >>>> Compiling source in /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7 ... > [32;01m*[0m Compiling for single precision >make -j3 >Making all in include >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/include' >Making all in . >make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/include' >make[2]: Nothing to be done for `all-am'. >make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/include' >Making all in types >make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/include/types' >make[2]: Nothing to be done for `all'. >make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/include/types' >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/include' >Making all in src >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src' >make all-recursive >make[2]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src' >Making all in gmxlib >make[3]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib' >Making all in nonbonded >make[4]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded' >Making all in nb_kernel_ia32_sse >make[5]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse' >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel010_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel010_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel030_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel030_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel100_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel100_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel100_ia32_sse.s -o nb_kernel100_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel010_ia32_sse.s -o nb_kernel010_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel030_ia32_sse.s -o nb_kernel030_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel101_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel101_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel102_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel102_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel103_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel103_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel103_ia32_sse.s -o nb_kernel103_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel104_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel104_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel101_ia32_sse.s -o nb_kernel101_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel110_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel110_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel102_ia32_sse.s -o nb_kernel102_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel111_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel111_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel104_ia32_sse.s -o nb_kernel104_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel112_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel112_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel110_ia32_sse.s -o nb_kernel110_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel113_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel113_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel111_ia32_sse.s -o nb_kernel111_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel112_ia32_sse.s -o nb_kernel112_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel114_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel114_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel130_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel130_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel113_ia32_sse.s -o nb_kernel113_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel131_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel131_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel114_ia32_sse.s -o nb_kernel114_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel131_ia32_sse.s -o nb_kernel131_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel130_ia32_sse.s -o nb_kernel130_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel132_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel132_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel133_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel133_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel134_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel134_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel134_ia32_sse.s -o nb_kernel134_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel132_ia32_sse.s -o nb_kernel132_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel133_ia32_sse.s -o nb_kernel133_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel200_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel200_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel201_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel201_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel202_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel202_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel200_ia32_sse.s -o nb_kernel200_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel201_ia32_sse.s -o nb_kernel201_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel203_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel203_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel202_ia32_sse.s -o nb_kernel202_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel204_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel204_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel210_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel210_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel210_ia32_sse.s -o nb_kernel210_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel203_ia32_sse.s -o nb_kernel203_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel211_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel211_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel204_ia32_sse.s -o nb_kernel204_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel212_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel212_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel213_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel213_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel211_ia32_sse.s -o nb_kernel211_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel214_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel214_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel213_ia32_sse.s -o nb_kernel213_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel212_ia32_sse.s -o nb_kernel212_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel230_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel231_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel214_ia32_sse.s -o nb_kernel214_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel232_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel231_ia32_sse.s -o nb_kernel231_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel230_ia32_sse.s -o nb_kernel230_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel233_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel233_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel232_ia32_sse.s -o nb_kernel232_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel234_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel300_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel300_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel233_ia32_sse.s -o nb_kernel233_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel234_ia32_sse.s -o nb_kernel234_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel301_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel302_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel302_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel300_ia32_sse.s -o nb_kernel300_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel303_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel303_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel301_ia32_sse.s -o nb_kernel301_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel302_ia32_sse.s -o nb_kernel302_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel303_ia32_sse.s -o nb_kernel303_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel304_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel304_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel310_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel311_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel311_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel304_ia32_sse.s -o nb_kernel304_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel311_ia32_sse.s -o nb_kernel311_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel312_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel312_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel313_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel313_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel310_ia32_sse.s -o nb_kernel310_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel314_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel314_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel312_ia32_sse.s -o nb_kernel312_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel313_ia32_sse.s -o nb_kernel313_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel330_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel330_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel331_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel331_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel314_ia32_sse.s -o nb_kernel314_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel332_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel331_ia32_sse.s -o nb_kernel331_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel330_ia32_sse.s -o nb_kernel330_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel333_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel333_ia32_sse.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel334_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel334_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel332_ia32_sse.s -o nb_kernel332_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel400_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel334_ia32_sse.s -o nb_kernel334_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel410_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel333_ia32_sse.s -o nb_kernel333_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel430_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel430_ia32_sse.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel400_ia32_sse.s -o nb_kernel400_ia32_sse.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel_ia32_sse_test_asm.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse_test_asm.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel410_ia32_sse.s -o nb_kernel410_ia32_sse.o >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel_ia32_sse.lo -MD -MP -MF .deps/nb_kernel_ia32_sse.Tpo -c -o nb_kernel_ia32_sse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse.c > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel430_ia32_sse.s -o nb_kernel430_ia32_sse.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse_test_asm.s -o nb_kernel_ia32_sse_test_asm.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel_ia32_sse.lo -MD -MP -MF .deps/nb_kernel_ia32_sse.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_sse/nb_kernel_ia32_sse.c -o nb_kernel_ia32_sse.o >mv -f .deps/nb_kernel_ia32_sse.Tpo .deps/nb_kernel_ia32_sse.Plo >/bin/sh ../../../../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -march=prescott -pipe -Wl,-O1 -g -all-static -o libnb_kernel_ia32_sse.la nb_kernel010_ia32_sse.lo nb_kernel030_ia32_sse.lo nb_kernel100_ia32_sse.lo nb_kernel101_ia32_sse.lo nb_kernel102_ia32_sse.lo nb_kernel103_ia32_sse.lo nb_kernel104_ia32_sse.lo nb_kernel110_ia32_sse.lo nb_kernel111_ia32_sse.lo nb_kernel112_ia32_sse.lo nb_kernel113_ia32_sse.lo nb_kernel114_ia32_sse.lo nb_kernel130_ia32_sse.lo nb_kernel131_ia32_sse.lo nb_kernel132_ia32_sse.lo nb_kernel133_ia32_sse.lo nb_kernel134_ia32_sse.lo nb_kernel200_ia32_sse.lo nb_kernel201_ia32_sse.lo nb_kernel202_ia32_sse.lo nb_kernel203_ia32_sse.lo nb_kernel204_ia32_sse.lo nb_kernel210_ia32_sse.lo nb_kernel211_ia32_sse.lo nb_kernel212_ia32_sse.lo nb_kernel213_ia32_sse.lo nb_kernel214_ia32_sse.lo nb_kernel230_ia32_sse.lo nb_kernel231_ia32_sse.lo nb_kernel232_ia32_sse.lo nb_kernel233_ia32_sse.lo nb_kernel234_ia32_sse.lo nb_kernel300_ia32_sse.lo nb_kernel301_ia32_sse.lo nb_kernel302_ia32_sse.lo nb_kernel303_ia32_sse.lo nb_kernel304_ia32_sse.lo nb_kernel310_ia32_sse.lo nb_kernel311_ia32_sse.lo nb_kernel312_ia32_sse.lo nb_kernel313_ia32_sse.lo nb_kernel314_ia32_sse.lo nb_kernel330_ia32_sse.lo nb_kernel331_ia32_sse.lo nb_kernel332_ia32_sse.lo nb_kernel333_ia32_sse.lo nb_kernel334_ia32_sse.lo nb_kernel400_ia32_sse.lo nb_kernel410_ia32_sse.lo nb_kernel430_ia32_sse.lo nb_kernel_ia32_sse_test_asm.lo nb_kernel_ia32_sse.lo -lnsl -lfftw3f -lm -lblas -llapack -ldmalloc -lSM -lICE -lX11 >mkdir .libs >i686-pc-linux-gnu-ar cru .libs/libnb_kernel_ia32_sse.a nb_kernel010_ia32_sse.o nb_kernel030_ia32_sse.o nb_kernel100_ia32_sse.o nb_kernel101_ia32_sse.o nb_kernel102_ia32_sse.o nb_kernel103_ia32_sse.o nb_kernel104_ia32_sse.o nb_kernel110_ia32_sse.o nb_kernel111_ia32_sse.o nb_kernel112_ia32_sse.o nb_kernel113_ia32_sse.o nb_kernel114_ia32_sse.o nb_kernel130_ia32_sse.o nb_kernel131_ia32_sse.o nb_kernel132_ia32_sse.o nb_kernel133_ia32_sse.o nb_kernel134_ia32_sse.o nb_kernel200_ia32_sse.o nb_kernel201_ia32_sse.o nb_kernel202_ia32_sse.o nb_kernel203_ia32_sse.o nb_kernel204_ia32_sse.o nb_kernel210_ia32_sse.o nb_kernel211_ia32_sse.o nb_kernel212_ia32_sse.o nb_kernel213_ia32_sse.o nb_kernel214_ia32_sse.o nb_kernel230_ia32_sse.o nb_kernel231_ia32_sse.o nb_kernel232_ia32_sse.o nb_kernel233_ia32_sse.o nb_kernel234_ia32_sse.o nb_kernel300_ia32_sse.o nb_kernel301_ia32_sse.o nb_kernel302_ia32_sse.o nb_kernel303_ia32_sse.o nb_kernel304_ia32_sse.o nb_kernel310_ia32_sse.o nb_kernel311_ia32_sse.o nb_kernel312_ia32_sse.o nb_kernel313_ia32_sse.o nb_kernel314_ia32_sse.o nb_kernel330_ia32_sse.o nb_kernel331_ia32_sse.o nb_kernel332_ia32_sse.o nb_kernel333_ia32_sse.o nb_kernel334_ia32_sse.o nb_kernel400_ia32_sse.o nb_kernel410_ia32_sse.o nb_kernel430_ia32_sse.o nb_kernel_ia32_sse_test_asm.o nb_kernel_ia32_sse.o >i686-pc-linux-gnu-ranlib .libs/libnb_kernel_ia32_sse.a >creating libnb_kernel_ia32_sse.la >(cd .libs && rm -f libnb_kernel_ia32_sse.la && ln -s ../libnb_kernel_ia32_sse.la libnb_kernel_ia32_sse.la) >make[5]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse' >Making all in nb_kernel_ia32_3dnow >make[5]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow' >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel010_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel010_ia32_3dnow.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel030_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel030_ia32_3dnow.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel100_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel100_ia32_3dnow.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel010_ia32_3dnow.s -o nb_kernel010_ia32_3dnow.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel030_ia32_3dnow.s -o nb_kernel030_ia32_3dnow.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel100_ia32_3dnow.s -o nb_kernel100_ia32_3dnow.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel101_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel101_ia32_3dnow.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel102_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel102_ia32_3dnow.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel110_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel110_ia32_3dnow.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel101_ia32_3dnow.s -o nb_kernel101_ia32_3dnow.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel110_ia32_3dnow.s -o nb_kernel110_ia32_3dnow.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel111_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel111_ia32_3dnow.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel112_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel112_ia32_3dnow.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel102_ia32_3dnow.s -o nb_kernel102_ia32_3dnow.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel300_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel300_ia32_3dnow.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel111_ia32_3dnow.s -o nb_kernel111_ia32_3dnow.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel301_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel301_ia32_3dnow.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel112_ia32_3dnow.s -o nb_kernel112_ia32_3dnow.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel302_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel302_ia32_3dnow.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel300_ia32_3dnow.s -o nb_kernel300_ia32_3dnow.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel310_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel310_ia32_3dnow.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel301_ia32_3dnow.s -o nb_kernel301_ia32_3dnow.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel311_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel311_ia32_3dnow.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel302_ia32_3dnow.s -o nb_kernel302_ia32_3dnow.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel312_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel312_ia32_3dnow.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel310_ia32_3dnow.s -o nb_kernel310_ia32_3dnow.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel330_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel330_ia32_3dnow.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel311_ia32_3dnow.s -o nb_kernel311_ia32_3dnow.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel312_ia32_3dnow.s -o nb_kernel312_ia32_3dnow.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel331_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel331_ia32_3dnow.s >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel332_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel332_ia32_3dnow.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel330_ia32_3dnow.s -o nb_kernel330_ia32_3dnow.o >/bin/sh ../../../../libtool --mode=compile i686-pc-linux-gnu-gcc -march=prescott -pipe -c -o nb_kernel_ia32_3dnow_test_asm.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow_test_asm.s > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel331_ia32_3dnow.s -o nb_kernel331_ia32_3dnow.o >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel_ia32_3dnow.lo -MD -MP -MF .deps/nb_kernel_ia32_3dnow.Tpo -c -o nb_kernel_ia32_3dnow.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow.c > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel332_ia32_3dnow.s -o nb_kernel332_ia32_3dnow.o > i686-pc-linux-gnu-gcc -march=prescott -pipe -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow_test_asm.s -o nb_kernel_ia32_3dnow_test_asm.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel_ia32_3dnow.lo -MD -MP -MF .deps/nb_kernel_ia32_3dnow.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/nb_kernel_ia32_3dnow.c -o nb_kernel_ia32_3dnow.o >mv -f .deps/nb_kernel_ia32_3dnow.Tpo .deps/nb_kernel_ia32_3dnow.Plo >/bin/sh ../../../../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -march=prescott -pipe -Wl,-O1 -g -all-static -o libnb_kernel_ia32_3dnow.la nb_kernel010_ia32_3dnow.lo nb_kernel030_ia32_3dnow.lo nb_kernel100_ia32_3dnow.lo nb_kernel101_ia32_3dnow.lo nb_kernel102_ia32_3dnow.lo nb_kernel110_ia32_3dnow.lo nb_kernel111_ia32_3dnow.lo nb_kernel112_ia32_3dnow.lo nb_kernel300_ia32_3dnow.lo nb_kernel301_ia32_3dnow.lo nb_kernel302_ia32_3dnow.lo nb_kernel310_ia32_3dnow.lo nb_kernel311_ia32_3dnow.lo nb_kernel312_ia32_3dnow.lo nb_kernel330_ia32_3dnow.lo nb_kernel331_ia32_3dnow.lo nb_kernel332_ia32_3dnow.lo nb_kernel_ia32_3dnow_test_asm.lo nb_kernel_ia32_3dnow.lo -lnsl -lfftw3f -lm -lblas -llapack -ldmalloc -lSM -lICE -lX11 >mkdir .libs >i686-pc-linux-gnu-ar cru .libs/libnb_kernel_ia32_3dnow.a nb_kernel010_ia32_3dnow.o nb_kernel030_ia32_3dnow.o nb_kernel100_ia32_3dnow.o nb_kernel101_ia32_3dnow.o nb_kernel102_ia32_3dnow.o nb_kernel110_ia32_3dnow.o nb_kernel111_ia32_3dnow.o nb_kernel112_ia32_3dnow.o nb_kernel300_ia32_3dnow.o nb_kernel301_ia32_3dnow.o nb_kernel302_ia32_3dnow.o nb_kernel310_ia32_3dnow.o nb_kernel311_ia32_3dnow.o nb_kernel312_ia32_3dnow.o nb_kernel330_ia32_3dnow.o nb_kernel331_ia32_3dnow.o nb_kernel332_ia32_3dnow.o nb_kernel_ia32_3dnow_test_asm.o nb_kernel_ia32_3dnow.o >i686-pc-linux-gnu-ranlib .libs/libnb_kernel_ia32_3dnow.a >creating libnb_kernel_ia32_3dnow.la >(cd .libs && rm -f libnb_kernel_ia32_3dnow.la && ln -s ../libnb_kernel_ia32_3dnow.la libnb_kernel_ia32_3dnow.la) >make[5]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow' >Making all in nb_kernel >make[5]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded/nb_kernel' >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel/mknb.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_metacode.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel/mknb_metacode.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_common.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel/mknb_common.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_declarations.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel/mknb_declarations.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_outerloop.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel/mknb_outerloop.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_innerloop.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel/mknb_innerloop.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -c -o mknb_interactions.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel/mknb_interactions.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -o mknb mknb.o mknb_metacode.o mknb_common.o mknb_declarations.o mknb_outerloop.o mknb_innerloop.o mknb_interactions.o >rm -f kernel-stamp >./mknb -software_invsqrt >>>> Gromacs nonbonded kernel generator (-h for help) >>>> Generating single precision functions in C. >>>> Using Gromacs software version of 1/sqrt(x). > Progress: 1% Progress: 2% Progress: 4% Progress: 5% Progress: 7% Progress: 8% Progress: 10% Progress: 11% Progress: 13% Progress: 14% Progress: 16% Progress: 17% Progress: 19% Progress: 20% Progress: 22% Progress: 23% Progress: 25% Progress: 26% Progress: 28% Progress: 29% Progress: 31% Progress: 32% Progress: 34% Progress: 35% Progress: 37% Progress: 38% Progress: 40% Progress: 41% Progress: 43% Progress: 44% Progress: 46% Progress: 47% Progress: 49% Progress: 50% Progress: 52% Progress: 53% Progress: 55% Progress: 56% Progress: 58% Progress: 59% Progress: 61% Progress: 62% Progress: 64% Progress: 65% Progress: 67% Progress: 68% Progress: 70% Progress: 71% Progress: 73% Progress: 74% Progress: 76% Progress: 77% Progress: 79% Progress: 80% Progress: 82% Progress: 83% Progress: 85% Progress: 86% Progress: 88% Progress: 89% Progress: 91% Progress: 92% Progress: 94% Progress: 95% Progress: 97% Progress: 98% Progress: 100% >make all-am >make[6]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded/nb_kernel' >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel.lo -MD -MP -MF .deps/nb_kernel.Tpo -c -o nb_kernel.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel/nb_kernel.c >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel010_c.lo -MD -MP -MF .deps/nb_kernel010_c.Tpo -c -o nb_kernel010_c.lo nb_kernel010_c.c >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel020_c.lo -MD -MP -MF .deps/nb_kernel020_c.Tpo -c -o nb_kernel020_c.lo nb_kernel020_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel010_c.lo -MD -MP -MF .deps/nb_kernel010_c.Tpo -c nb_kernel010_c.c -o nb_kernel010_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel020_c.lo -MD -MP -MF .deps/nb_kernel020_c.Tpo -c nb_kernel020_c.c -o nb_kernel020_c.o >mv -f .deps/nb_kernel010_c.Tpo .deps/nb_kernel010_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel030_c.lo -MD -MP -MF .deps/nb_kernel030_c.Tpo -c -o nb_kernel030_c.lo nb_kernel030_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel.lo -MD -MP -MF .deps/nb_kernel.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel/nb_kernel.c -o nb_kernel.o >mv -f .deps/nb_kernel020_c.Tpo .deps/nb_kernel020_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel100_c.lo -MD -MP -MF .deps/nb_kernel100_c.Tpo -c -o nb_kernel100_c.lo nb_kernel100_c.c >mv -f .deps/nb_kernel.Tpo .deps/nb_kernel.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel101_c.lo -MD -MP -MF .deps/nb_kernel101_c.Tpo -c -o nb_kernel101_c.lo nb_kernel101_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel030_c.lo -MD -MP -MF .deps/nb_kernel030_c.Tpo -c nb_kernel030_c.c -o nb_kernel030_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel100_c.lo -MD -MP -MF .deps/nb_kernel100_c.Tpo -c nb_kernel100_c.c -o nb_kernel100_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel101_c.lo -MD -MP -MF .deps/nb_kernel101_c.Tpo -c nb_kernel101_c.c -o nb_kernel101_c.o >mv -f .deps/nb_kernel030_c.Tpo .deps/nb_kernel030_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel102_c.lo -MD -MP -MF .deps/nb_kernel102_c.Tpo -c -o nb_kernel102_c.lo nb_kernel102_c.c >mv -f .deps/nb_kernel100_c.Tpo .deps/nb_kernel100_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel103_c.lo -MD -MP -MF .deps/nb_kernel103_c.Tpo -c -o nb_kernel103_c.lo nb_kernel103_c.c >mv -f .deps/nb_kernel101_c.Tpo .deps/nb_kernel101_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel104_c.lo -MD -MP -MF .deps/nb_kernel104_c.Tpo -c -o nb_kernel104_c.lo nb_kernel104_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel103_c.lo -MD -MP -MF .deps/nb_kernel103_c.Tpo -c nb_kernel103_c.c -o nb_kernel103_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel102_c.lo -MD -MP -MF .deps/nb_kernel102_c.Tpo -c nb_kernel102_c.c -o nb_kernel102_c.o >mv -f .deps/nb_kernel103_c.Tpo .deps/nb_kernel103_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel110_c.lo -MD -MP -MF .deps/nb_kernel110_c.Tpo -c -o nb_kernel110_c.lo nb_kernel110_c.c >mv -f .deps/nb_kernel102_c.Tpo .deps/nb_kernel102_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel111_c.lo -MD -MP -MF .deps/nb_kernel111_c.Tpo -c -o nb_kernel111_c.lo nb_kernel111_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel104_c.lo -MD -MP -MF .deps/nb_kernel104_c.Tpo -c nb_kernel104_c.c -o nb_kernel104_c.o >mv -f .deps/nb_kernel104_c.Tpo .deps/nb_kernel104_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel112_c.lo -MD -MP -MF .deps/nb_kernel112_c.Tpo -c -o nb_kernel112_c.lo nb_kernel112_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel110_c.lo -MD -MP -MF .deps/nb_kernel110_c.Tpo -c nb_kernel110_c.c -o nb_kernel110_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel111_c.lo -MD -MP -MF .deps/nb_kernel111_c.Tpo -c nb_kernel111_c.c -o nb_kernel111_c.o >mv -f .deps/nb_kernel110_c.Tpo .deps/nb_kernel110_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel113_c.lo -MD -MP -MF .deps/nb_kernel113_c.Tpo -c -o nb_kernel113_c.lo nb_kernel113_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel112_c.lo -MD -MP -MF .deps/nb_kernel112_c.Tpo -c nb_kernel112_c.c -o nb_kernel112_c.o >mv -f .deps/nb_kernel111_c.Tpo .deps/nb_kernel111_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel114_c.lo -MD -MP -MF .deps/nb_kernel114_c.Tpo -c -o nb_kernel114_c.lo nb_kernel114_c.c >mv -f .deps/nb_kernel112_c.Tpo .deps/nb_kernel112_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel120_c.lo -MD -MP -MF .deps/nb_kernel120_c.Tpo -c -o nb_kernel120_c.lo nb_kernel120_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel113_c.lo -MD -MP -MF .deps/nb_kernel113_c.Tpo -c nb_kernel113_c.c -o nb_kernel113_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel114_c.lo -MD -MP -MF .deps/nb_kernel114_c.Tpo -c nb_kernel114_c.c -o nb_kernel114_c.o >mv -f .deps/nb_kernel113_c.Tpo .deps/nb_kernel113_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel121_c.lo -MD -MP -MF .deps/nb_kernel121_c.Tpo -c -o nb_kernel121_c.lo nb_kernel121_c.c >mv -f .deps/nb_kernel114_c.Tpo .deps/nb_kernel114_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel122_c.lo -MD -MP -MF .deps/nb_kernel122_c.Tpo -c -o nb_kernel122_c.lo nb_kernel122_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel120_c.lo -MD -MP -MF .deps/nb_kernel120_c.Tpo -c nb_kernel120_c.c -o nb_kernel120_c.o >mv -f .deps/nb_kernel120_c.Tpo .deps/nb_kernel120_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel123_c.lo -MD -MP -MF .deps/nb_kernel123_c.Tpo -c -o nb_kernel123_c.lo nb_kernel123_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel121_c.lo -MD -MP -MF .deps/nb_kernel121_c.Tpo -c nb_kernel121_c.c -o nb_kernel121_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel122_c.lo -MD -MP -MF .deps/nb_kernel122_c.Tpo -c nb_kernel122_c.c -o nb_kernel122_c.o >mv -f .deps/nb_kernel122_c.Tpo .deps/nb_kernel122_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel124_c.lo -MD -MP -MF .deps/nb_kernel124_c.Tpo -c -o nb_kernel124_c.lo nb_kernel124_c.c >mv -f .deps/nb_kernel121_c.Tpo .deps/nb_kernel121_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel130_c.lo -MD -MP -MF .deps/nb_kernel130_c.Tpo -c -o nb_kernel130_c.lo nb_kernel130_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel123_c.lo -MD -MP -MF .deps/nb_kernel123_c.Tpo -c nb_kernel123_c.c -o nb_kernel123_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel124_c.lo -MD -MP -MF .deps/nb_kernel124_c.Tpo -c nb_kernel124_c.c -o nb_kernel124_c.o >mv -f .deps/nb_kernel123_c.Tpo .deps/nb_kernel123_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel131_c.lo -MD -MP -MF .deps/nb_kernel131_c.Tpo -c -o nb_kernel131_c.lo nb_kernel131_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel130_c.lo -MD -MP -MF .deps/nb_kernel130_c.Tpo -c nb_kernel130_c.c -o nb_kernel130_c.o >mv -f .deps/nb_kernel124_c.Tpo .deps/nb_kernel124_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel132_c.lo -MD -MP -MF .deps/nb_kernel132_c.Tpo -c -o nb_kernel132_c.lo nb_kernel132_c.c >mv -f .deps/nb_kernel130_c.Tpo .deps/nb_kernel130_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel133_c.lo -MD -MP -MF .deps/nb_kernel133_c.Tpo -c -o nb_kernel133_c.lo nb_kernel133_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel132_c.lo -MD -MP -MF .deps/nb_kernel132_c.Tpo -c nb_kernel132_c.c -o nb_kernel132_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel131_c.lo -MD -MP -MF .deps/nb_kernel131_c.Tpo -c nb_kernel131_c.c -o nb_kernel131_c.o >mv -f .deps/nb_kernel131_c.Tpo .deps/nb_kernel131_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel134_c.lo -MD -MP -MF .deps/nb_kernel134_c.Tpo -c -o nb_kernel134_c.lo nb_kernel134_c.c >mv -f .deps/nb_kernel132_c.Tpo .deps/nb_kernel132_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel200_c.lo -MD -MP -MF .deps/nb_kernel200_c.Tpo -c -o nb_kernel200_c.lo nb_kernel200_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel133_c.lo -MD -MP -MF .deps/nb_kernel133_c.Tpo -c nb_kernel133_c.c -o nb_kernel133_c.o >mv -f .deps/nb_kernel133_c.Tpo .deps/nb_kernel133_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel201_c.lo -MD -MP -MF .deps/nb_kernel201_c.Tpo -c -o nb_kernel201_c.lo nb_kernel201_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel134_c.lo -MD -MP -MF .deps/nb_kernel134_c.Tpo -c nb_kernel134_c.c -o nb_kernel134_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel200_c.lo -MD -MP -MF .deps/nb_kernel200_c.Tpo -c nb_kernel200_c.c -o nb_kernel200_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel201_c.lo -MD -MP -MF .deps/nb_kernel201_c.Tpo -c nb_kernel201_c.c -o nb_kernel201_c.o >mv -f .deps/nb_kernel200_c.Tpo .deps/nb_kernel200_c.Plo >mv -f .deps/nb_kernel134_c.Tpo .deps/nb_kernel134_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel202_c.lo -MD -MP -MF .deps/nb_kernel202_c.Tpo -c -o nb_kernel202_c.lo nb_kernel202_c.c >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel203_c.lo -MD -MP -MF .deps/nb_kernel203_c.Tpo -c -o nb_kernel203_c.lo nb_kernel203_c.c >mv -f .deps/nb_kernel201_c.Tpo .deps/nb_kernel201_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel204_c.lo -MD -MP -MF .deps/nb_kernel204_c.Tpo -c -o nb_kernel204_c.lo nb_kernel204_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel202_c.lo -MD -MP -MF .deps/nb_kernel202_c.Tpo -c nb_kernel202_c.c -o nb_kernel202_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel203_c.lo -MD -MP -MF .deps/nb_kernel203_c.Tpo -c nb_kernel203_c.c -o nb_kernel203_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel204_c.lo -MD -MP -MF .deps/nb_kernel204_c.Tpo -c nb_kernel204_c.c -o nb_kernel204_c.o >mv -f .deps/nb_kernel203_c.Tpo .deps/nb_kernel203_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel210_c.lo -MD -MP -MF .deps/nb_kernel210_c.Tpo -c -o nb_kernel210_c.lo nb_kernel210_c.c >mv -f .deps/nb_kernel202_c.Tpo .deps/nb_kernel202_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel211_c.lo -MD -MP -MF .deps/nb_kernel211_c.Tpo -c -o nb_kernel211_c.lo nb_kernel211_c.c >mv -f .deps/nb_kernel204_c.Tpo .deps/nb_kernel204_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel212_c.lo -MD -MP -MF .deps/nb_kernel212_c.Tpo -c -o nb_kernel212_c.lo nb_kernel212_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel210_c.lo -MD -MP -MF .deps/nb_kernel210_c.Tpo -c nb_kernel210_c.c -o nb_kernel210_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel212_c.lo -MD -MP -MF .deps/nb_kernel212_c.Tpo -c nb_kernel212_c.c -o nb_kernel212_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel211_c.lo -MD -MP -MF .deps/nb_kernel211_c.Tpo -c nb_kernel211_c.c -o nb_kernel211_c.o >mv -f .deps/nb_kernel212_c.Tpo .deps/nb_kernel212_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel213_c.lo -MD -MP -MF .deps/nb_kernel213_c.Tpo -c -o nb_kernel213_c.lo nb_kernel213_c.c >mv -f .deps/nb_kernel210_c.Tpo .deps/nb_kernel210_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel214_c.lo -MD -MP -MF .deps/nb_kernel214_c.Tpo -c -o nb_kernel214_c.lo nb_kernel214_c.c >mv -f .deps/nb_kernel211_c.Tpo .deps/nb_kernel211_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel220_c.lo -MD -MP -MF .deps/nb_kernel220_c.Tpo -c -o nb_kernel220_c.lo nb_kernel220_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel214_c.lo -MD -MP -MF .deps/nb_kernel214_c.Tpo -c nb_kernel214_c.c -o nb_kernel214_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel220_c.lo -MD -MP -MF .deps/nb_kernel220_c.Tpo -c nb_kernel220_c.c -o nb_kernel220_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel213_c.lo -MD -MP -MF .deps/nb_kernel213_c.Tpo -c nb_kernel213_c.c -o nb_kernel213_c.o >mv -f .deps/nb_kernel214_c.Tpo .deps/nb_kernel214_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel221_c.lo -MD -MP -MF .deps/nb_kernel221_c.Tpo -c -o nb_kernel221_c.lo nb_kernel221_c.c >mv -f .deps/nb_kernel220_c.Tpo .deps/nb_kernel220_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel222_c.lo -MD -MP -MF .deps/nb_kernel222_c.Tpo -c -o nb_kernel222_c.lo nb_kernel222_c.c >mv -f .deps/nb_kernel213_c.Tpo .deps/nb_kernel213_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel223_c.lo -MD -MP -MF .deps/nb_kernel223_c.Tpo -c -o nb_kernel223_c.lo nb_kernel223_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel223_c.lo -MD -MP -MF .deps/nb_kernel223_c.Tpo -c nb_kernel223_c.c -o nb_kernel223_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel221_c.lo -MD -MP -MF .deps/nb_kernel221_c.Tpo -c nb_kernel221_c.c -o nb_kernel221_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel222_c.lo -MD -MP -MF .deps/nb_kernel222_c.Tpo -c nb_kernel222_c.c -o nb_kernel222_c.o >mv -f .deps/nb_kernel223_c.Tpo .deps/nb_kernel223_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel224_c.lo -MD -MP -MF .deps/nb_kernel224_c.Tpo -c -o nb_kernel224_c.lo nb_kernel224_c.c >mv -f .deps/nb_kernel221_c.Tpo .deps/nb_kernel221_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel230_c.lo -MD -MP -MF .deps/nb_kernel230_c.Tpo -c -o nb_kernel230_c.lo nb_kernel230_c.c >mv -f .deps/nb_kernel222_c.Tpo .deps/nb_kernel222_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel231_c.lo -MD -MP -MF .deps/nb_kernel231_c.Tpo -c -o nb_kernel231_c.lo nb_kernel231_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel224_c.lo -MD -MP -MF .deps/nb_kernel224_c.Tpo -c nb_kernel224_c.c -o nb_kernel224_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel230_c.lo -MD -MP -MF .deps/nb_kernel230_c.Tpo -c nb_kernel230_c.c -o nb_kernel230_c.o >mv -f .deps/nb_kernel224_c.Tpo .deps/nb_kernel224_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel232_c.lo -MD -MP -MF .deps/nb_kernel232_c.Tpo -c -o nb_kernel232_c.lo nb_kernel232_c.c >mv -f .deps/nb_kernel230_c.Tpo .deps/nb_kernel230_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel233_c.lo -MD -MP -MF .deps/nb_kernel233_c.Tpo -c -o nb_kernel233_c.lo nb_kernel233_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel231_c.lo -MD -MP -MF .deps/nb_kernel231_c.Tpo -c nb_kernel231_c.c -o nb_kernel231_c.o >mv -f .deps/nb_kernel231_c.Tpo .deps/nb_kernel231_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel234_c.lo -MD -MP -MF .deps/nb_kernel234_c.Tpo -c -o nb_kernel234_c.lo nb_kernel234_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel232_c.lo -MD -MP -MF .deps/nb_kernel232_c.Tpo -c nb_kernel232_c.c -o nb_kernel232_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel233_c.lo -MD -MP -MF .deps/nb_kernel233_c.Tpo -c nb_kernel233_c.c -o nb_kernel233_c.o >mv -f .deps/nb_kernel232_c.Tpo .deps/nb_kernel232_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel300_c.lo -MD -MP -MF .deps/nb_kernel300_c.Tpo -c -o nb_kernel300_c.lo nb_kernel300_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel234_c.lo -MD -MP -MF .deps/nb_kernel234_c.Tpo -c nb_kernel234_c.c -o nb_kernel234_c.o >mv -f .deps/nb_kernel233_c.Tpo .deps/nb_kernel233_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel301_c.lo -MD -MP -MF .deps/nb_kernel301_c.Tpo -c -o nb_kernel301_c.lo nb_kernel301_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel300_c.lo -MD -MP -MF .deps/nb_kernel300_c.Tpo -c nb_kernel300_c.c -o nb_kernel300_c.o >mv -f .deps/nb_kernel234_c.Tpo .deps/nb_kernel234_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel302_c.lo -MD -MP -MF .deps/nb_kernel302_c.Tpo -c -o nb_kernel302_c.lo nb_kernel302_c.c >mv -f .deps/nb_kernel300_c.Tpo .deps/nb_kernel300_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel303_c.lo -MD -MP -MF .deps/nb_kernel303_c.Tpo -c -o nb_kernel303_c.lo nb_kernel303_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel301_c.lo -MD -MP -MF .deps/nb_kernel301_c.Tpo -c nb_kernel301_c.c -o nb_kernel301_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel302_c.lo -MD -MP -MF .deps/nb_kernel302_c.Tpo -c nb_kernel302_c.c -o nb_kernel302_c.o >mv -f .deps/nb_kernel301_c.Tpo .deps/nb_kernel301_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel304_c.lo -MD -MP -MF .deps/nb_kernel304_c.Tpo -c -o nb_kernel304_c.lo nb_kernel304_c.c >mv -f .deps/nb_kernel302_c.Tpo .deps/nb_kernel302_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel310_c.lo -MD -MP -MF .deps/nb_kernel310_c.Tpo -c -o nb_kernel310_c.lo nb_kernel310_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel303_c.lo -MD -MP -MF .deps/nb_kernel303_c.Tpo -c nb_kernel303_c.c -o nb_kernel303_c.o >mv -f .deps/nb_kernel303_c.Tpo .deps/nb_kernel303_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel311_c.lo -MD -MP -MF .deps/nb_kernel311_c.Tpo -c -o nb_kernel311_c.lo nb_kernel311_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel304_c.lo -MD -MP -MF .deps/nb_kernel304_c.Tpo -c nb_kernel304_c.c -o nb_kernel304_c.o >mv -f .deps/nb_kernel304_c.Tpo .deps/nb_kernel304_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel312_c.lo -MD -MP -MF .deps/nb_kernel312_c.Tpo -c -o nb_kernel312_c.lo nb_kernel312_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel310_c.lo -MD -MP -MF .deps/nb_kernel310_c.Tpo -c nb_kernel310_c.c -o nb_kernel310_c.o >mv -f .deps/nb_kernel310_c.Tpo .deps/nb_kernel310_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel313_c.lo -MD -MP -MF .deps/nb_kernel313_c.Tpo -c -o nb_kernel313_c.lo nb_kernel313_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel312_c.lo -MD -MP -MF .deps/nb_kernel312_c.Tpo -c nb_kernel312_c.c -o nb_kernel312_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel311_c.lo -MD -MP -MF .deps/nb_kernel311_c.Tpo -c nb_kernel311_c.c -o nb_kernel311_c.o >mv -f .deps/nb_kernel312_c.Tpo .deps/nb_kernel312_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel314_c.lo -MD -MP -MF .deps/nb_kernel314_c.Tpo -c -o nb_kernel314_c.lo nb_kernel314_c.c >mv -f .deps/nb_kernel311_c.Tpo .deps/nb_kernel311_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel320_c.lo -MD -MP -MF .deps/nb_kernel320_c.Tpo -c -o nb_kernel320_c.lo nb_kernel320_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel313_c.lo -MD -MP -MF .deps/nb_kernel313_c.Tpo -c nb_kernel313_c.c -o nb_kernel313_c.o >mv -f .deps/nb_kernel313_c.Tpo .deps/nb_kernel313_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel321_c.lo -MD -MP -MF .deps/nb_kernel321_c.Tpo -c -o nb_kernel321_c.lo nb_kernel321_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel314_c.lo -MD -MP -MF .deps/nb_kernel314_c.Tpo -c nb_kernel314_c.c -o nb_kernel314_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel320_c.lo -MD -MP -MF .deps/nb_kernel320_c.Tpo -c nb_kernel320_c.c -o nb_kernel320_c.o >mv -f .deps/nb_kernel320_c.Tpo .deps/nb_kernel320_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel322_c.lo -MD -MP -MF .deps/nb_kernel322_c.Tpo -c -o nb_kernel322_c.lo nb_kernel322_c.c >mv -f .deps/nb_kernel314_c.Tpo .deps/nb_kernel314_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel323_c.lo -MD -MP -MF .deps/nb_kernel323_c.Tpo -c -o nb_kernel323_c.lo nb_kernel323_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel321_c.lo -MD -MP -MF .deps/nb_kernel321_c.Tpo -c nb_kernel321_c.c -o nb_kernel321_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel322_c.lo -MD -MP -MF .deps/nb_kernel322_c.Tpo -c nb_kernel322_c.c -o nb_kernel322_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel323_c.lo -MD -MP -MF .deps/nb_kernel323_c.Tpo -c nb_kernel323_c.c -o nb_kernel323_c.o >mv -f .deps/nb_kernel321_c.Tpo .deps/nb_kernel321_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel324_c.lo -MD -MP -MF .deps/nb_kernel324_c.Tpo -c -o nb_kernel324_c.lo nb_kernel324_c.c >mv -f .deps/nb_kernel322_c.Tpo .deps/nb_kernel322_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel330_c.lo -MD -MP -MF .deps/nb_kernel330_c.Tpo -c -o nb_kernel330_c.lo nb_kernel330_c.c >mv -f .deps/nb_kernel323_c.Tpo .deps/nb_kernel323_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel331_c.lo -MD -MP -MF .deps/nb_kernel331_c.Tpo -c -o nb_kernel331_c.lo nb_kernel331_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel324_c.lo -MD -MP -MF .deps/nb_kernel324_c.Tpo -c nb_kernel324_c.c -o nb_kernel324_c.o >mv -f .deps/nb_kernel324_c.Tpo .deps/nb_kernel324_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel332_c.lo -MD -MP -MF .deps/nb_kernel332_c.Tpo -c -o nb_kernel332_c.lo nb_kernel332_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel330_c.lo -MD -MP -MF .deps/nb_kernel330_c.Tpo -c nb_kernel330_c.c -o nb_kernel330_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel331_c.lo -MD -MP -MF .deps/nb_kernel331_c.Tpo -c nb_kernel331_c.c -o nb_kernel331_c.o >mv -f .deps/nb_kernel330_c.Tpo .deps/nb_kernel330_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel333_c.lo -MD -MP -MF .deps/nb_kernel333_c.Tpo -c -o nb_kernel333_c.lo nb_kernel333_c.c >mv -f .deps/nb_kernel331_c.Tpo .deps/nb_kernel331_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel334_c.lo -MD -MP -MF .deps/nb_kernel334_c.Tpo -c -o nb_kernel334_c.lo nb_kernel334_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel332_c.lo -MD -MP -MF .deps/nb_kernel332_c.Tpo -c nb_kernel332_c.c -o nb_kernel332_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel333_c.lo -MD -MP -MF .deps/nb_kernel333_c.Tpo -c nb_kernel333_c.c -o nb_kernel333_c.o >mv -f .deps/nb_kernel333_c.Tpo .deps/nb_kernel333_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel400_c.lo -MD -MP -MF .deps/nb_kernel400_c.Tpo -c -o nb_kernel400_c.lo nb_kernel400_c.c >mv -f .deps/nb_kernel332_c.Tpo .deps/nb_kernel332_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel410_c.lo -MD -MP -MF .deps/nb_kernel410_c.Tpo -c -o nb_kernel410_c.lo nb_kernel410_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel334_c.lo -MD -MP -MF .deps/nb_kernel334_c.Tpo -c nb_kernel334_c.c -o nb_kernel334_c.o >mv -f .deps/nb_kernel334_c.Tpo .deps/nb_kernel334_c.Plo > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel410_c.lo -MD -MP -MF .deps/nb_kernel410_c.Tpo -c nb_kernel410_c.c -o nb_kernel410_c.o >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel420_c.lo -MD -MP -MF .deps/nb_kernel420_c.Tpo -c -o nb_kernel420_c.lo nb_kernel420_c.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel400_c.lo -MD -MP -MF .deps/nb_kernel400_c.Tpo -c nb_kernel400_c.c -o nb_kernel400_c.o >mv -f .deps/nb_kernel410_c.Tpo .deps/nb_kernel410_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel430_c.lo -MD -MP -MF .deps/nb_kernel430_c.Tpo -c -o nb_kernel430_c.lo nb_kernel430_c.c >mv -f .deps/nb_kernel400_c.Tpo .deps/nb_kernel400_c.Plo > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel420_c.lo -MD -MP -MF .deps/nb_kernel420_c.Tpo -c nb_kernel420_c.c -o nb_kernel420_c.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_kernel -I../../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_kernel430_c.lo -MD -MP -MF .deps/nb_kernel430_c.Tpo -c nb_kernel430_c.c -o nb_kernel430_c.o >mv -f .deps/nb_kernel420_c.Tpo .deps/nb_kernel420_c.Plo >mv -f .deps/nb_kernel430_c.Tpo .deps/nb_kernel430_c.Plo >/bin/sh ../../../../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -march=prescott -pipe -Wl,-O1 -g -all-static -o libnb_kernel.la nb_kernel.lo nb_kernel010_c.lo nb_kernel020_c.lo nb_kernel030_c.lo nb_kernel100_c.lo nb_kernel101_c.lo nb_kernel102_c.lo nb_kernel103_c.lo nb_kernel104_c.lo nb_kernel110_c.lo nb_kernel111_c.lo nb_kernel112_c.lo nb_kernel113_c.lo nb_kernel114_c.lo nb_kernel120_c.lo nb_kernel121_c.lo nb_kernel122_c.lo nb_kernel123_c.lo nb_kernel124_c.lo nb_kernel130_c.lo nb_kernel131_c.lo nb_kernel132_c.lo nb_kernel133_c.lo nb_kernel134_c.lo nb_kernel200_c.lo nb_kernel201_c.lo nb_kernel202_c.lo nb_kernel203_c.lo nb_kernel204_c.lo nb_kernel210_c.lo nb_kernel211_c.lo nb_kernel212_c.lo nb_kernel213_c.lo nb_kernel214_c.lo nb_kernel220_c.lo nb_kernel221_c.lo nb_kernel222_c.lo nb_kernel223_c.lo nb_kernel224_c.lo nb_kernel230_c.lo nb_kernel231_c.lo nb_kernel232_c.lo nb_kernel233_c.lo nb_kernel234_c.lo nb_kernel300_c.lo nb_kernel301_c.lo nb_kernel302_c.lo nb_kernel303_c.lo nb_kernel304_c.lo nb_kernel310_c.lo nb_kernel311_c.lo nb_kernel312_c.lo nb_kernel313_c.lo nb_kernel314_c.lo nb_kernel320_c.lo nb_kernel321_c.lo nb_kernel322_c.lo nb_kernel323_c.lo nb_kernel324_c.lo nb_kernel330_c.lo nb_kernel331_c.lo nb_kernel332_c.lo nb_kernel333_c.lo nb_kernel334_c.lo nb_kernel400_c.lo nb_kernel410_c.lo nb_kernel420_c.lo nb_kernel430_c.lo -lnsl -lfftw3f -lm -lblas -llapack -ldmalloc -lSM -lICE -lX11 >mkdir .libs >i686-pc-linux-gnu-ar cru .libs/libnb_kernel.a nb_kernel.o nb_kernel010_c.o nb_kernel020_c.o nb_kernel030_c.o nb_kernel100_c.o nb_kernel101_c.o nb_kernel102_c.o nb_kernel103_c.o nb_kernel104_c.o nb_kernel110_c.o nb_kernel111_c.o nb_kernel112_c.o nb_kernel113_c.o nb_kernel114_c.o nb_kernel120_c.o nb_kernel121_c.o nb_kernel122_c.o nb_kernel123_c.o nb_kernel124_c.o nb_kernel130_c.o nb_kernel131_c.o nb_kernel132_c.o nb_kernel133_c.o nb_kernel134_c.o nb_kernel200_c.o nb_kernel201_c.o nb_kernel202_c.o nb_kernel203_c.o nb_kernel204_c.o nb_kernel210_c.o nb_kernel211_c.o nb_kernel212_c.o nb_kernel213_c.o nb_kernel214_c.o nb_kernel220_c.o nb_kernel221_c.o nb_kernel222_c.o nb_kernel223_c.o nb_kernel224_c.o nb_kernel230_c.o nb_kernel231_c.o nb_kernel232_c.o nb_kernel233_c.o nb_kernel234_c.o nb_kernel300_c.o nb_kernel301_c.o nb_kernel302_c.o nb_kernel303_c.o nb_kernel304_c.o nb_kernel310_c.o nb_kernel311_c.o nb_kernel312_c.o nb_kernel313_c.o nb_kernel314_c.o nb_kernel320_c.o nb_kernel321_c.o nb_kernel322_c.o nb_kernel323_c.o nb_kernel324_c.o nb_kernel330_c.o nb_kernel331_c.o nb_kernel332_c.o nb_kernel333_c.o nb_kernel334_c.o nb_kernel400_c.o nb_kernel410_c.o nb_kernel420_c.o nb_kernel430_c.o >i686-pc-linux-gnu-ranlib .libs/libnb_kernel.a >creating libnb_kernel.la >(cd .libs && rm -f libnb_kernel.la && ln -s ../libnb_kernel.la libnb_kernel.la) >make[6]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded/nb_kernel' >make[5]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded/nb_kernel' >make[5]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded' >/bin/sh ../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded -I../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nonbonded.lo -MD -MP -MF .deps/nonbonded.Tpo -c -o nonbonded.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nonbonded.c >/bin/sh ../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded -I../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_free_energy.lo -MD -MP -MF .deps/nb_free_energy.Tpo -c -o nb_free_energy.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_free_energy.c >/bin/sh ../../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded -I../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_generic.lo -MD -MP -MF .deps/nb_generic.Tpo -c -o nb_generic.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_generic.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded -I../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nonbonded.lo -MD -MP -MF .deps/nonbonded.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nonbonded.c -o nonbonded.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded -I../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_generic.lo -MD -MP -MF .deps/nb_generic.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_generic.c -o nb_generic.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded -I../../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nb_free_energy.lo -MD -MP -MF .deps/nb_free_energy.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nonbonded/nb_free_energy.c -o nb_free_energy.o >mv -f .deps/nonbonded.Tpo .deps/nonbonded.Plo >mv -f .deps/nb_free_energy.Tpo .deps/nb_free_energy.Plo >mv -f .deps/nb_generic.Tpo .deps/nb_generic.Plo >/bin/sh ../../../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -march=prescott -pipe -Wl,-O1 -g -all-static -o libnonbonded.la nonbonded.lo nb_free_energy.lo nb_generic.lo nb_kernel_ia32_sse/libnb_kernel_ia32_sse.la nb_kernel_ia32_3dnow/libnb_kernel_ia32_3dnow.la nb_kernel/libnb_kernel.la -lnsl -lfftw3f -lm -lblas -llapack -ldmalloc -lSM -lICE -lX11 >mkdir .libs >rm -fr .libs/libnonbonded.lax >mkdir .libs/libnonbonded.lax >rm -fr .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a >mkdir .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a >(cd .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a && i686-pc-linux-gnu-ar x /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded/nb_kernel_ia32_sse/.libs/libnb_kernel_ia32_sse.a) >rm -fr .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a >mkdir .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a >(cd .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a && i686-pc-linux-gnu-ar x /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded/nb_kernel_ia32_3dnow/.libs/libnb_kernel_ia32_3dnow.a) >rm -fr .libs/libnonbonded.lax/libnb_kernel.a >mkdir .libs/libnonbonded.lax/libnb_kernel.a >(cd .libs/libnonbonded.lax/libnb_kernel.a && i686-pc-linux-gnu-ar x /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded/nb_kernel/.libs/libnb_kernel.a) >i686-pc-linux-gnu-ar cru .libs/libnonbonded.a nonbonded.o nb_free_energy.o nb_generic.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel_ia32_sse_test_asm.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel110_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel104_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel330_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel133_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel234_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel214_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel134_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel113_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel302_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel300_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel233_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel202_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel311_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel314_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel101_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel410_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel132_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel430_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel211_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel331_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel231_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel212_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel201_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel304_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel010_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel114_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel232_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel333_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel213_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel130_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel111_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel030_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel332_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel313_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel203_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel112_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel230_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel334_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel103_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel200_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel210_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel204_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel102_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel303_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel310_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel131_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel400_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel100_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel301_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_sse.a/nb_kernel312_ia32_sse.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel112_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel311_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel030_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel010_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel300_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel101_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel110_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel301_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel331_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel330_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel102_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel312_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel100_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel302_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel_ia32_3dnow_test_asm.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel332_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel310_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel_ia32_3dnow.a/nb_kernel111_ia32_3dnow.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel020_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel220_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel124_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel234_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel400_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel201_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel311_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel101_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel200_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel223_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel304_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel334_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel121_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel214_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel333_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel300_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel222_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel324_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel204_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel430_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel232_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel102_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel314_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel111_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel323_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel113_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel420_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel103_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel203_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel122_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel231_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel233_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel332_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel114_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel112_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel132_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel221_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel104_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel410_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel321_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel211_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel213_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel322_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel301_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel313_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel320_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel131_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel110_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel224_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel010_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel030_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel123_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel331_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel120_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel202_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel210_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel303_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel100_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel230_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel212_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel330_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel130_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel310_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel312_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel133_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel302_c.o .libs/libnonbonded.lax/libnb_kernel.a/nb_kernel134_c.o >i686-pc-linux-gnu-ranlib .libs/libnonbonded.a >rm -fr .libs/libnonbonded.lax >creating libnonbonded.la >(cd .libs && rm -f libnonbonded.la && ln -s ../libnonbonded.la libnonbonded.la) >make[5]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded' >make[4]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded' >make[4]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib' >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT 3dview.lo -MD -MP -MF .deps/3dview.Tpo -c -o 3dview.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/3dview.c >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT atomprop.lo -MD -MP -MF .deps/atomprop.Tpo -c -o atomprop.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/atomprop.c >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT bondfree.lo -MD -MP -MF .deps/bondfree.Tpo -c -o bondfree.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/bondfree.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT 3dview.lo -MD -MP -MF .deps/3dview.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/3dview.c -o 3dview.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT bondfree.lo -MD -MP -MF .deps/bondfree.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/bondfree.c -o bondfree.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT atomprop.lo -MD -MP -MF .deps/atomprop.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/atomprop.c -o atomprop.o >mv -f .deps/3dview.Tpo .deps/3dview.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT calcgrid.lo -MD -MP -MF .deps/calcgrid.Tpo -c -o calcgrid.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/calcgrid.c >mv -f .deps/bondfree.Tpo .deps/bondfree.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT calch.lo -MD -MP -MF .deps/calch.Tpo -c -o calch.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/calch.c >mv -f .deps/atomprop.Tpo .deps/atomprop.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT checkpoint.lo -MD -MP -MF .deps/checkpoint.Tpo -c -o checkpoint.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/checkpoint.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT calcgrid.lo -MD -MP -MF .deps/calcgrid.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/calcgrid.c -o calcgrid.o >mv -f .deps/calcgrid.Tpo .deps/calcgrid.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT confio.lo -MD -MP -MF .deps/confio.Tpo -c -o confio.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/confio.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT calch.lo -MD -MP -MF .deps/calch.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/calch.c -o calch.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT checkpoint.lo -MD -MP -MF .deps/checkpoint.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/checkpoint.c -o checkpoint.o >mv -f .deps/calch.Tpo .deps/calch.Plo >[ -f version.h ] || touch version.h >version=`git --git-dir=/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/.git describe --always --long --abbrev=20 HEAD 2>/dev/null || echo 4.0.7-2010-06-08`; \ > version="static const char ver_string[] = \"VERSION $version\";"; \ > echo "$version" | cmp -s version.h - || echo "$version" > version.h >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT disre.lo -MD -MP -MF .deps/disre.Tpo -c -o disre.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/disre.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT confio.lo -MD -MP -MF .deps/confio.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/confio.c -o confio.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT disre.lo -MD -MP -MF .deps/disre.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/disre.c -o disre.o >mv -f .deps/confio.Tpo .deps/confio.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT do_fit.lo -MD -MP -MF .deps/do_fit.Tpo -c -o do_fit.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/do_fit.c >mv -f .deps/disre.Tpo .deps/disre.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT enxio.lo -MD -MP -MF .deps/enxio.Tpo -c -o enxio.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/enxio.c >mv -f .deps/checkpoint.Tpo .deps/checkpoint.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ewald_util.lo -MD -MP -MF .deps/ewald_util.Tpo -c -o ewald_util.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/ewald_util.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT do_fit.lo -MD -MP -MF .deps/do_fit.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/do_fit.c -o do_fit.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT enxio.lo -MD -MP -MF .deps/enxio.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/enxio.c -o enxio.o >mv -f .deps/do_fit.Tpo .deps/do_fit.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_fatal.lo -MD -MP -MF .deps/gmx_fatal.Tpo -c -o gmx_fatal.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/gmx_fatal.c >mv -f .deps/enxio.Tpo .deps/enxio.Plo > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ewald_util.lo -MD -MP -MF .deps/ewald_util.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/ewald_util.c -o ewald_util.o >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ffscanf.lo -MD -MP -MF .deps/ffscanf.Tpo -c -o ffscanf.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/ffscanf.c >mv -f .deps/ewald_util.Tpo .deps/ewald_util.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT filenm.lo -MD -MP -MF .deps/filenm.Tpo -c -o filenm.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/filenm.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_fatal.lo -MD -MP -MF .deps/gmx_fatal.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/gmx_fatal.c -o gmx_fatal.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ffscanf.lo -MD -MP -MF .deps/ffscanf.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/ffscanf.c -o ffscanf.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT filenm.lo -MD -MP -MF .deps/filenm.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/filenm.c -o filenm.o >mv -f .deps/ffscanf.Tpo .deps/ffscanf.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT futil.lo -MD -MP -MF .deps/futil.Tpo -c -o futil.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/futil.c >mv -f .deps/gmx_fatal.Tpo .deps/gmx_fatal.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gbutil.lo -MD -MP -MF .deps/gbutil.Tpo -c -o gbutil.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/gbutil.c >mv -f .deps/filenm.Tpo .deps/filenm.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmxfio.lo -MD -MP -MF .deps/gmxfio.Tpo -c -o gmxfio.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/gmxfio.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gbutil.lo -MD -MP -MF .deps/gbutil.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/gbutil.c -o gbutil.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT futil.lo -MD -MP -MF .deps/futil.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/futil.c -o futil.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmxfio.lo -MD -MP -MF .deps/gmxfio.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/gmxfio.c -o gmxfio.o >mv -f .deps/gbutil.Tpo .deps/gbutil.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ifunc.lo -MD -MP -MF .deps/ifunc.Tpo -c -o ifunc.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/ifunc.c >mv -f .deps/futil.Tpo .deps/futil.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT index.lo -MD -MP -MF .deps/index.Tpo -c -o index.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/index.c >mv -f .deps/gmxfio.Tpo .deps/gmxfio.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT cinvsqrtdata.lo -MD -MP -MF .deps/cinvsqrtdata.Tpo -c -o cinvsqrtdata.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/cinvsqrtdata.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ifunc.lo -MD -MP -MF .deps/ifunc.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/ifunc.c -o ifunc.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT index.lo -MD -MP -MF .deps/index.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/index.c -o index.o >mv -f .deps/ifunc.Tpo .deps/ifunc.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT invblock.lo -MD -MP -MF .deps/invblock.Tpo -c -o invblock.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/invblock.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT cinvsqrtdata.lo -MD -MP -MF .deps/cinvsqrtdata.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/cinvsqrtdata.c -o cinvsqrtdata.o >mv -f .deps/cinvsqrtdata.Tpo .deps/cinvsqrtdata.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT macros.lo -MD -MP -MF .deps/macros.Tpo -c -o macros.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/macros.c >mv -f .deps/index.Tpo .deps/index.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT orires.lo -MD -MP -MF .deps/orires.Tpo -c -o orires.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/orires.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT invblock.lo -MD -MP -MF .deps/invblock.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/invblock.c -o invblock.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT orires.lo -MD -MP -MF .deps/orires.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/orires.c -o orires.o >mv -f .deps/invblock.Tpo .deps/invblock.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT sparsematrix.lo -MD -MP -MF .deps/sparsematrix.Tpo -c -o sparsematrix.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/sparsematrix.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT macros.lo -MD -MP -MF .deps/macros.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/macros.c -o macros.o >mv -f .deps/orires.Tpo .deps/orires.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT main.lo -MD -MP -MF .deps/main.Tpo -c -o main.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/main.c >mv -f .deps/macros.Tpo .deps/macros.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT maths.lo -MD -MP -MF .deps/maths.Tpo -c -o maths.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/maths.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT sparsematrix.lo -MD -MP -MF .deps/sparsematrix.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/sparsematrix.c -o sparsematrix.o >mv -f .deps/sparsematrix.Tpo .deps/sparsematrix.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT matio.lo -MD -MP -MF .deps/matio.Tpo -c -o matio.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/matio.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT main.lo -MD -MP -MF .deps/main.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/main.c -o main.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT maths.lo -MD -MP -MF .deps/maths.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/maths.c -o maths.o >mv -f .deps/maths.Tpo .deps/maths.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT mshift.lo -MD -MP -MF .deps/mshift.Tpo -c -o mshift.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/mshift.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT matio.lo -MD -MP -MF .deps/matio.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/matio.c -o matio.o >mv -f .deps/main.Tpo .deps/main.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT mtop_util.lo -MD -MP -MF .deps/mtop_util.Tpo -c -o mtop_util.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/mtop_util.c >mv -f .deps/matio.Tpo .deps/matio.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT mtxio.lo -MD -MP -MF .deps/mtxio.Tpo -c -o mtxio.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/mtxio.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT mshift.lo -MD -MP -MF .deps/mshift.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/mshift.c -o mshift.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT mtxio.lo -MD -MP -MF .deps/mtxio.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/mtxio.c -o mtxio.o >mv -f .deps/mshift.Tpo .deps/mshift.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT mvdata.lo -MD -MP -MF .deps/mvdata.Tpo -c -o mvdata.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/mvdata.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT mtop_util.lo -MD -MP -MF .deps/mtop_util.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/mtop_util.c -o mtop_util.o >mv -f .deps/mtxio.Tpo .deps/mtxio.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT names.lo -MD -MP -MF .deps/names.Tpo -c -o names.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/names.c >mv -f .deps/mtop_util.Tpo .deps/mtop_util.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT network.lo -MD -MP -MF .deps/network.Tpo -c -o network.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/network.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT names.lo -MD -MP -MF .deps/names.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/names.c -o names.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT mvdata.lo -MD -MP -MF .deps/mvdata.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/mvdata.c -o mvdata.o >mv -f .deps/names.Tpo .deps/names.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nrama.lo -MD -MP -MF .deps/nrama.Tpo -c -o nrama.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nrama.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT network.lo -MD -MP -MF .deps/network.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/network.c -o network.o >mv -f .deps/mvdata.Tpo .deps/mvdata.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nrjac.lo -MD -MP -MF .deps/nrjac.Tpo -c -o nrjac.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nrjac.c >mv -f .deps/network.Tpo .deps/network.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nrnb.lo -MD -MP -MF .deps/nrnb.Tpo -c -o nrnb.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nrnb.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nrama.lo -MD -MP -MF .deps/nrama.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nrama.c -o nrama.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nrjac.lo -MD -MP -MF .deps/nrjac.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nrjac.c -o nrjac.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nrnb.lo -MD -MP -MF .deps/nrnb.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/nrnb.c -o nrnb.o >mv -f .deps/nrama.Tpo .deps/nrama.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pargs.lo -MD -MP -MF .deps/pargs.Tpo -c -o pargs.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/pargs.c >mv -f .deps/nrjac.Tpo .deps/nrjac.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pbc.lo -MD -MP -MF .deps/pbc.Tpo -c -o pbc.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/pbc.c >mv -f .deps/nrnb.Tpo .deps/nrnb.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pdbio.lo -MD -MP -MF .deps/pdbio.Tpo -c -o pdbio.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/pdbio.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pargs.lo -MD -MP -MF .deps/pargs.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/pargs.c -o pargs.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pbc.lo -MD -MP -MF .deps/pbc.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/pbc.c -o pbc.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pdbio.lo -MD -MP -MF .deps/pdbio.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/pdbio.c -o pdbio.o >mv -f .deps/pargs.Tpo .deps/pargs.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT princ.lo -MD -MP -MF .deps/princ.Tpo -c -o princ.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/princ.c >mv -f .deps/pbc.Tpo .deps/pbc.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT rando.lo -MD -MP -MF .deps/rando.Tpo -c -o rando.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/rando.c >mv -f .deps/pdbio.Tpo .deps/pdbio.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT random.lo -MD -MP -MF .deps/random.Tpo -c -o random.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/random.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT princ.lo -MD -MP -MF .deps/princ.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/princ.c -o princ.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT rando.lo -MD -MP -MF .deps/rando.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/rando.c -o rando.o >mv -f .deps/princ.Tpo .deps/princ.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_random.lo -MD -MP -MF .deps/gmx_random.Tpo -c -o gmx_random.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/gmx_random.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT random.lo -MD -MP -MF .deps/random.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/random.c -o random.o >mv -f .deps/rando.Tpo .deps/rando.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT rbin.lo -MD -MP -MF .deps/rbin.Tpo -c -o rbin.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/rbin.c >mv -f .deps/random.Tpo .deps/random.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT readinp.lo -MD -MP -MF .deps/readinp.Tpo -c -o readinp.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/readinp.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_random.lo -MD -MP -MF .deps/gmx_random.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/gmx_random.c -o gmx_random.o >mv -f .deps/gmx_random.Tpo .deps/gmx_random.Plo > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT readinp.lo -MD -MP -MF .deps/readinp.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/readinp.c -o readinp.o >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT replace.lo -MD -MP -MF .deps/replace.Tpo -c -o replace.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/replace.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT rbin.lo -MD -MP -MF .deps/rbin.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/rbin.c -o rbin.o >mv -f .deps/readinp.Tpo .deps/readinp.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT rmpbc.lo -MD -MP -MF .deps/rmpbc.Tpo -c -o rmpbc.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/rmpbc.c >mv -f .deps/rbin.Tpo .deps/rbin.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT shift_util.lo -MD -MP -MF .deps/shift_util.Tpo -c -o shift_util.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/shift_util.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT replace.lo -MD -MP -MF .deps/replace.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/replace.c -o replace.o >mv -f .deps/replace.Tpo .deps/replace.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT sortwater.lo -MD -MP -MF .deps/sortwater.Tpo -c -o sortwater.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/sortwater.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT rmpbc.lo -MD -MP -MF .deps/rmpbc.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/rmpbc.c -o rmpbc.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT shift_util.lo -MD -MP -MF .deps/shift_util.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/shift_util.c -o shift_util.o >mv -f .deps/rmpbc.Tpo .deps/rmpbc.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT smalloc.lo -MD -MP -MF .deps/smalloc.Tpo -c -o smalloc.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/smalloc.c >mv -f .deps/shift_util.Tpo .deps/shift_util.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT statutil.lo -MD -MP -MF .deps/statutil.Tpo -c -o statutil.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/statutil.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT smalloc.lo -MD -MP -MF .deps/smalloc.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/smalloc.c -o smalloc.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT sortwater.lo -MD -MP -MF .deps/sortwater.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/sortwater.c -o sortwater.o >mv -f .deps/smalloc.Tpo .deps/smalloc.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT strdb.lo -MD -MP -MF .deps/strdb.Tpo -c -o strdb.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/strdb.c >mv -f .deps/sortwater.Tpo .deps/sortwater.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT string2.lo -MD -MP -MF .deps/string2.Tpo -c -o string2.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/string2.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT statutil.lo -MD -MP -MF .deps/statutil.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/statutil.c -o statutil.o >mv -f .deps/statutil.Tpo .deps/statutil.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT symtab.lo -MD -MP -MF .deps/symtab.Tpo -c -o symtab.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/symtab.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT strdb.lo -MD -MP -MF .deps/strdb.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/strdb.c -o strdb.o >mv -f .deps/strdb.Tpo .deps/strdb.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT topsort.lo -MD -MP -MF .deps/topsort.Tpo -c -o topsort.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/topsort.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT string2.lo -MD -MP -MF .deps/string2.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/string2.c -o string2.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT symtab.lo -MD -MP -MF .deps/symtab.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/symtab.c -o symtab.o >mv -f .deps/string2.Tpo .deps/string2.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT tpxio.lo -MD -MP -MF .deps/tpxio.Tpo -c -o tpxio.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/tpxio.c >mv -f .deps/symtab.Tpo .deps/symtab.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT trnio.lo -MD -MP -MF .deps/trnio.Tpo -c -o trnio.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/trnio.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT tpxio.lo -MD -MP -MF .deps/tpxio.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/tpxio.c -o tpxio.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT topsort.lo -MD -MP -MF .deps/topsort.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/topsort.c -o topsort.o >mv -f .deps/topsort.Tpo .deps/topsort.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT trxio.lo -MD -MP -MF .deps/trxio.Tpo -c -o trxio.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/trxio.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT trnio.lo -MD -MP -MF .deps/trnio.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/trnio.c -o trnio.o >mv -f .deps/tpxio.Tpo .deps/tpxio.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT txtdump.lo -MD -MP -MF .deps/txtdump.Tpo -c -o txtdump.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/txtdump.c >mv -f .deps/trnio.Tpo .deps/trnio.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT typedefs.lo -MD -MP -MF .deps/typedefs.Tpo -c -o typedefs.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/typedefs.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT trxio.lo -MD -MP -MF .deps/trxio.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/trxio.c -o trxio.o >mv -f .deps/trxio.Tpo .deps/trxio.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT viewit.lo -MD -MP -MF .deps/viewit.Tpo -c -o viewit.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/viewit.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT txtdump.lo -MD -MP -MF .deps/txtdump.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/txtdump.c -o txtdump.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT typedefs.lo -MD -MP -MF .deps/typedefs.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/typedefs.c -o typedefs.o >mv -f .deps/txtdump.Tpo .deps/txtdump.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT wgms.lo -MD -MP -MF .deps/wgms.Tpo -c -o wgms.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/wgms.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT viewit.lo -MD -MP -MF .deps/viewit.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/viewit.c -o viewit.o >mv -f .deps/typedefs.Tpo .deps/typedefs.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT wman.lo -MD -MP -MF .deps/wman.Tpo -c -o wman.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/wman.c >mv -f .deps/viewit.Tpo .deps/viewit.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT writeps.lo -MD -MP -MF .deps/writeps.Tpo -c -o writeps.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/writeps.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT wgms.lo -MD -MP -MF .deps/wgms.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/wgms.c -o wgms.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT wman.lo -MD -MP -MF .deps/wman.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/wman.c -o wman.o >mv -f .deps/wman.Tpo .deps/wman.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT xdrd.lo -MD -MP -MF .deps/xdrd.Tpo -c -o xdrd.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/xdrd.c >mv -f .deps/wgms.Tpo .deps/wgms.Plo > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT writeps.lo -MD -MP -MF .deps/writeps.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/writeps.c -o writeps.o >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT xtcio.lo -MD -MP -MF .deps/xtcio.Tpo -c -o xtcio.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/xtcio.c >mv -f .deps/writeps.Tpo .deps/writeps.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT xvgr.lo -MD -MP -MF .deps/xvgr.Tpo -c -o xvgr.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/xvgr.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT xdrd.lo -MD -MP -MF .deps/xdrd.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/xdrd.c -o xdrd.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT xtcio.lo -MD -MP -MF .deps/xtcio.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/xtcio.c -o xtcio.o >mv -f .deps/xdrd.Tpo .deps/xdrd.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT libxdrf.lo -MD -MP -MF .deps/libxdrf.Tpo -c -o libxdrf.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/libxdrf.c >mv -f .deps/xtcio.Tpo .deps/xtcio.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_arpack.lo -MD -MP -MF .deps/gmx_arpack.Tpo -c -o gmx_arpack.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/gmx_arpack.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT xvgr.lo -MD -MP -MF .deps/xvgr.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/xvgr.c -o xvgr.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT libxdrf.lo -MD -MP -MF .deps/libxdrf.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/libxdrf.c -o libxdrf.o >mv -f .deps/xvgr.Tpo .deps/xvgr.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT dihres.lo -MD -MP -MF .deps/dihres.Tpo -c -o dihres.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/dihres.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_arpack.lo -MD -MP -MF .deps/gmx_arpack.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/gmx_arpack.c -o gmx_arpack.o >mv -f .deps/libxdrf.Tpo .deps/libxdrf.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT tcontrol.lo -MD -MP -MF .deps/tcontrol.Tpo -c -o tcontrol.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/tcontrol.c >mv -f .deps/gmx_arpack.Tpo .deps/gmx_arpack.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT splitter.lo -MD -MP -MF .deps/splitter.Tpo -c -o splitter.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/splitter.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT dihres.lo -MD -MP -MF .deps/dihres.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/dihres.c -o dihres.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT splitter.lo -MD -MP -MF .deps/splitter.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/splitter.c -o splitter.o >mv -f .deps/dihres.Tpo .deps/dihres.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_cyclecounter.lo -MD -MP -MF .deps/gmx_cyclecounter.Tpo -c -o gmx_cyclecounter.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/gmx_cyclecounter.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT tcontrol.lo -MD -MP -MF .deps/tcontrol.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/tcontrol.c -o tcontrol.o >mv -f .deps/splitter.Tpo .deps/splitter.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT copyrite.lo -MD -MP -MF .deps/copyrite.Tpo -c -o copyrite.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/copyrite.c >mv -f .deps/tcontrol.Tpo .deps/tcontrol.Plo > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT copyrite.lo -MD -MP -MF .deps/copyrite.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/copyrite.c -o copyrite.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_cyclecounter.lo -MD -MP -MF .deps/gmx_cyclecounter.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/gmxlib/gmx_cyclecounter.c -o gmx_cyclecounter.o >mv -f .deps/gmx_cyclecounter.Tpo .deps/gmx_cyclecounter.Plo >mv -f .deps/copyrite.Tpo .deps/copyrite.Plo >/bin/sh ../../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -march=prescott -pipe -version-info 5:0:0 -Wl,-O1 -g -all-static -o libgmx.la -rpath /usr/lib 3dview.lo atomprop.lo bondfree.lo calcgrid.lo calch.lo checkpoint.lo confio.lo copyrite.lo disre.lo do_fit.lo enxio.lo ewald_util.lo gmx_fatal.lo ffscanf.lo filenm.lo futil.lo gbutil.lo gmxfio.lo ifunc.lo index.lo cinvsqrtdata.lo invblock.lo macros.lo orires.lo sparsematrix.lo main.lo maths.lo matio.lo mshift.lo mtop_util.lo mtxio.lo mvdata.lo names.lo network.lo nrama.lo nrjac.lo nrnb.lo pargs.lo pbc.lo pdbio.lo princ.lo rando.lo random.lo gmx_random.lo rbin.lo readinp.lo replace.lo rmpbc.lo shift_util.lo sortwater.lo smalloc.lo statutil.lo strdb.lo string2.lo symtab.lo topsort.lo tpxio.lo trnio.lo trxio.lo txtdump.lo typedefs.lo viewit.lo wgms.lo wman.lo writeps.lo xdrd.lo xtcio.lo xvgr.lo libxdrf.lo gmx_arpack.lo dihres.lo tcontrol.lo splitter.lo gmx_cyclecounter.lo nonbonded/libnonbonded.la -lnsl -lfftw3f -lm -lblas -llapack -ldmalloc -lSM -lICE -lX11 >mkdir .libs >rm -fr .libs/libgmx.lax >mkdir .libs/libgmx.lax >rm -fr .libs/libgmx.lax/libnonbonded.a >mkdir .libs/libgmx.lax/libnonbonded.a >(cd .libs/libgmx.lax/libnonbonded.a && i686-pc-linux-gnu-ar x /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/nonbonded/.libs/libnonbonded.a) >i686-pc-linux-gnu-ar cru .libs/libgmx.a 3dview.o atomprop.o bondfree.o calcgrid.o calch.o checkpoint.o confio.o copyrite.o disre.o do_fit.o enxio.o ewald_util.o gmx_fatal.o ffscanf.o filenm.o futil.o gbutil.o gmxfio.o ifunc.o index.o cinvsqrtdata.o invblock.o macros.o orires.o sparsematrix.o main.o maths.o matio.o mshift.o mtop_util.o mtxio.o mvdata.o names.o network.o nrama.o nrjac.o nrnb.o pargs.o pbc.o pdbio.o princ.o rando.o random.o gmx_random.o rbin.o readinp.o replace.o rmpbc.o shift_util.o sortwater.o smalloc.o statutil.o strdb.o string2.o symtab.o topsort.o tpxio.o trnio.o trxio.o txtdump.o typedefs.o viewit.o wgms.o wman.o writeps.o xdrd.o xtcio.o xvgr.o libxdrf.o gmx_arpack.o dihres.o tcontrol.o splitter.o gmx_cyclecounter.o .libs/libgmx.lax/libnonbonded.a/nb_kernel020_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel_ia32_sse_test_asm.o .libs/libgmx.lax/libnonbonded.a/nb_kernel112_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel110_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel311_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel104_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel220_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel330_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel124_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel234_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel400_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel030_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel010_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel133_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel201_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel311_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel234_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel300_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel101_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel200_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel101_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel223_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel304_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel214_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel134_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel110_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel334_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel113_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel302_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel121_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel214_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel300_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel333_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel233_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel300_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel301_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel202_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel222_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel324_c.o .libs/libgmx.lax/libnonbonded.a/nb_free_energy.o .libs/libgmx.lax/libnonbonded.a/nb_kernel311_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel331_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel314_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel204_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel330_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel430_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel232_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel102_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel101_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel102_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel410_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel132_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel430_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel312_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel314_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel111_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel323_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel113_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel420_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel103_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel203_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel122_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel.o .libs/libgmx.lax/libnonbonded.a/nb_kernel100_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel302_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel211_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel331_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel231_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel231_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel212_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel201_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel304_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel010_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel233_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel114_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel232_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel333_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel332_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel213_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel114_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel130_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel112_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel132_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel221_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel104_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel111_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel030_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel332_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel410_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel313_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel321_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel203_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel211_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel112_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel230_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel334_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel213_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel103_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel200_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel_ia32_3dnow_test_asm.o .libs/libgmx.lax/libnonbonded.a/nb_kernel322_c.o .libs/libgmx.lax/libnonbonded.a/nonbonded.o .libs/libgmx.lax/libnonbonded.a/nb_kernel301_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel210_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel313_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel332_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel320_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel204_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel102_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel131_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel310_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel303_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel110_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel224_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel010_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel310_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel131_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel030_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel123_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel331_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel120_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel202_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel400_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel210_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel303_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel100_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel230_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel212_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel100_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel301_ia32_sse.o .libs/libgmx.lax/libnonbonded.a/nb_kernel330_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel130_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel111_ia32_3dnow.o .libs/libgmx.lax/libnonbonded.a/nb_kernel310_c.o .libs/libgmx.lax/libnonbonded.a/nb_generic.o .libs/libgmx.lax/libnonbonded.a/nb_kernel312_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel133_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel302_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel134_c.o .libs/libgmx.lax/libnonbonded.a/nb_kernel312_ia32_sse.o >i686-pc-linux-gnu-ranlib .libs/libgmx.a >rm -fr .libs/libgmx.lax >creating libgmx.la >(cd .libs && rm -f libgmx.la && ln -s ../libgmx.la libgmx.la) >make[4]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib' >make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib' >Making all in mdlib >make[3]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/mdlib' >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT calcmu.lo -MD -MP -MF .deps/calcmu.Tpo -c -o calcmu.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/calcmu.c >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT calcvir.lo -MD -MP -MF .deps/calcvir.Tpo -c -o calcvir.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/calcvir.c >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT constr.lo -MD -MP -MF .deps/constr.Tpo -c -o constr.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/constr.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT calcvir.lo -MD -MP -MF .deps/calcvir.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/calcvir.c -o calcvir.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT calcmu.lo -MD -MP -MF .deps/calcmu.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/calcmu.c -o calcmu.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT constr.lo -MD -MP -MF .deps/constr.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/constr.c -o constr.o >mv -f .deps/calcmu.Tpo .deps/calcmu.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT coupling.lo -MD -MP -MF .deps/coupling.Tpo -c -o coupling.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/coupling.c >mv -f .deps/calcvir.Tpo .deps/calcvir.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT domdec.lo -MD -MP -MF .deps/domdec.Tpo -c -o domdec.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/domdec.c >mv -f .deps/constr.Tpo .deps/constr.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT domdec_con.lo -MD -MP -MF .deps/domdec_con.Tpo -c -o domdec_con.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/domdec_con.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT domdec.lo -MD -MP -MF .deps/domdec.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/domdec.c -o domdec.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT domdec_con.lo -MD -MP -MF .deps/domdec_con.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/domdec_con.c -o domdec_con.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT coupling.lo -MD -MP -MF .deps/coupling.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/coupling.c -o coupling.o >mv -f .deps/domdec_con.Tpo .deps/domdec_con.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT domdec_network.lo -MD -MP -MF .deps/domdec_network.Tpo -c -o domdec_network.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/domdec_network.c >mv -f .deps/coupling.Tpo .deps/coupling.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT domdec_setup.lo -MD -MP -MF .deps/domdec_setup.Tpo -c -o domdec_setup.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/domdec_setup.c >mv -f .deps/domdec.Tpo .deps/domdec.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT domdec_top.lo -MD -MP -MF .deps/domdec_top.Tpo -c -o domdec_top.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/domdec_top.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT domdec_network.lo -MD -MP -MF .deps/domdec_network.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/domdec_network.c -o domdec_network.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT domdec_top.lo -MD -MP -MF .deps/domdec_top.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/domdec_top.c -o domdec_top.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT domdec_setup.lo -MD -MP -MF .deps/domdec_setup.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/domdec_setup.c -o domdec_setup.o >mv -f .deps/domdec_network.Tpo .deps/domdec_network.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ebin.lo -MD -MP -MF .deps/ebin.Tpo -c -o ebin.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/ebin.c >mv -f .deps/domdec_setup.Tpo .deps/domdec_setup.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT edsam.lo -MD -MP -MF .deps/edsam.Tpo -c -o edsam.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/edsam.c >mv -f .deps/domdec_top.Tpo .deps/domdec_top.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ewald.lo -MD -MP -MF .deps/ewald.Tpo -c -o ewald.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/ewald.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ebin.lo -MD -MP -MF .deps/ebin.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/ebin.c -o ebin.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ewald.lo -MD -MP -MF .deps/ewald.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/ewald.c -o ewald.o >mv -f .deps/ebin.Tpo .deps/ebin.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT fftgrid.lo -MD -MP -MF .deps/fftgrid.Tpo -c -o fftgrid.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/fftgrid.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT edsam.lo -MD -MP -MF .deps/edsam.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/edsam.c -o edsam.o >mv -f .deps/ewald.Tpo .deps/ewald.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT force.lo -MD -MP -MF .deps/force.Tpo -c -o force.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/force.c >mv -f .deps/edsam.Tpo .deps/edsam.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ghat.lo -MD -MP -MF .deps/ghat.Tpo -c -o ghat.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/ghat.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT fftgrid.lo -MD -MP -MF .deps/fftgrid.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/fftgrid.c -o fftgrid.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT force.lo -MD -MP -MF .deps/force.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/force.c -o force.o >mv -f .deps/fftgrid.Tpo .deps/fftgrid.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT init.lo -MD -MP -MF .deps/init.Tpo -c -o init.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/init.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ghat.lo -MD -MP -MF .deps/ghat.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/ghat.c -o ghat.o >mv -f .deps/force.Tpo .deps/force.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT mdatom.lo -MD -MP -MF .deps/mdatom.Tpo -c -o mdatom.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/mdatom.c >mv -f .deps/ghat.Tpo .deps/ghat.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT mdebin.lo -MD -MP -MF .deps/mdebin.Tpo -c -o mdebin.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/mdebin.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT init.lo -MD -MP -MF .deps/init.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/init.c -o init.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT mdatom.lo -MD -MP -MF .deps/mdatom.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/mdatom.c -o mdatom.o >mv -f .deps/mdatom.Tpo .deps/mdatom.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT minimize.lo -MD -MP -MF .deps/minimize.Tpo -c -o minimize.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/minimize.c >mv -f .deps/init.Tpo .deps/init.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT mvxvf.lo -MD -MP -MF .deps/mvxvf.Tpo -c -o mvxvf.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/mvxvf.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT mdebin.lo -MD -MP -MF .deps/mdebin.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/mdebin.c -o mdebin.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT mvxvf.lo -MD -MP -MF .deps/mvxvf.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/mvxvf.c -o mvxvf.o >mv -f .deps/mdebin.Tpo .deps/mdebin.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ns.lo -MD -MP -MF .deps/ns.Tpo -c -o ns.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/ns.c >mv -f .deps/mvxvf.Tpo .deps/mvxvf.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nsgrid.lo -MD -MP -MF .deps/nsgrid.Tpo -c -o nsgrid.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/nsgrid.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT minimize.lo -MD -MP -MF .deps/minimize.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/minimize.c -o minimize.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ns.lo -MD -MP -MF .deps/ns.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/ns.c -o ns.o >mv -f .deps/minimize.Tpo .deps/minimize.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT perf_est.lo -MD -MP -MF .deps/perf_est.Tpo -c -o perf_est.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/perf_est.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nsgrid.lo -MD -MP -MF .deps/nsgrid.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/nsgrid.c -o nsgrid.o >mv -f .deps/ns.Tpo .deps/ns.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pme.lo -MD -MP -MF .deps/pme.Tpo -c -o pme.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/pme.c >mv -f .deps/nsgrid.Tpo .deps/nsgrid.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pme_pp.lo -MD -MP -MF .deps/pme_pp.Tpo -c -o pme_pp.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/pme_pp.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pme.lo -MD -MP -MF .deps/pme.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/pme.c -o pme.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT perf_est.lo -MD -MP -MF .deps/perf_est.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/perf_est.c -o perf_est.o >mv -f .deps/perf_est.Tpo .deps/perf_est.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pppm.lo -MD -MP -MF .deps/pppm.Tpo -c -o pppm.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/pppm.c >mv -f .deps/pme.Tpo .deps/pme.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT partdec.lo -MD -MP -MF .deps/partdec.Tpo -c -o partdec.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/partdec.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pme_pp.lo -MD -MP -MF .deps/pme_pp.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/pme_pp.c -o pme_pp.o >mv -f .deps/pme_pp.Tpo .deps/pme_pp.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pull.lo -MD -MP -MF .deps/pull.Tpo -c -o pull.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/pull.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT partdec.lo -MD -MP -MF .deps/partdec.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/partdec.c -o partdec.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pppm.lo -MD -MP -MF .deps/pppm.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/pppm.c -o pppm.o >mv -f .deps/partdec.Tpo .deps/partdec.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pullutil.lo -MD -MP -MF .deps/pullutil.Tpo -c -o pullutil.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/pullutil.c >mv -f .deps/pppm.Tpo .deps/pppm.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT rf_util.lo -MD -MP -MF .deps/rf_util.Tpo -c -o rf_util.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/rf_util.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pull.lo -MD -MP -MF .deps/pull.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/pull.c -o pull.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pullutil.lo -MD -MP -MF .deps/pullutil.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/pullutil.c -o pullutil.o >mv -f .deps/pull.Tpo .deps/pull.Plo >mv -f .deps/pullutil.Tpo .deps/pullutil.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT shakef.lo -MD -MP -MF .deps/shakef.Tpo -c -o shakef.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/shakef.c >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT sim_util.lo -MD -MP -MF .deps/sim_util.Tpo -c -o sim_util.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/sim_util.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT rf_util.lo -MD -MP -MF .deps/rf_util.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/rf_util.c -o rf_util.o >mv -f .deps/rf_util.Tpo .deps/rf_util.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT shellfc.lo -MD -MP -MF .deps/shellfc.Tpo -c -o shellfc.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/shellfc.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT shakef.lo -MD -MP -MF .deps/shakef.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/shakef.c -o shakef.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT sim_util.lo -MD -MP -MF .deps/sim_util.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/sim_util.c -o sim_util.o >mv -f .deps/shakef.Tpo .deps/shakef.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT stat.lo -MD -MP -MF .deps/stat.Tpo -c -o stat.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/stat.c >mv -f .deps/sim_util.Tpo .deps/sim_util.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT tables.lo -MD -MP -MF .deps/tables.Tpo -c -o tables.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/tables.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT shellfc.lo -MD -MP -MF .deps/shellfc.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/shellfc.c -o shellfc.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT stat.lo -MD -MP -MF .deps/stat.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/stat.c -o stat.o >mv -f .deps/shellfc.Tpo .deps/shellfc.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT tgroup.lo -MD -MP -MF .deps/tgroup.Tpo -c -o tgroup.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/tgroup.c >mv -f .deps/stat.Tpo .deps/stat.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT update.lo -MD -MP -MF .deps/update.Tpo -c -o update.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/update.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT tables.lo -MD -MP -MF .deps/tables.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/tables.c -o tables.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT tgroup.lo -MD -MP -MF .deps/tgroup.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/tgroup.c -o tgroup.o >mv -f .deps/tables.Tpo .deps/tables.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT vcm.lo -MD -MP -MF .deps/vcm.Tpo -c -o vcm.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/vcm.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT update.lo -MD -MP -MF .deps/update.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/update.c -o update.o >mv -f .deps/tgroup.Tpo .deps/tgroup.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT vsite.lo -MD -MP -MF .deps/vsite.Tpo -c -o vsite.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/vsite.c >mv -f .deps/update.Tpo .deps/update.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT wall.lo -MD -MP -MF .deps/wall.Tpo -c -o wall.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/wall.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT vcm.lo -MD -MP -MF .deps/vcm.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/vcm.c -o vcm.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT vsite.lo -MD -MP -MF .deps/vsite.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/vsite.c -o vsite.o >mv -f .deps/vcm.Tpo .deps/vcm.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT wnblist.lo -MD -MP -MF .deps/wnblist.Tpo -c -o wnblist.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/wnblist.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT wall.lo -MD -MP -MF .deps/wall.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/wall.c -o wall.o >mv -f .deps/vsite.Tpo .deps/vsite.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT csettle.lo -MD -MP -MF .deps/csettle.Tpo -c -o csettle.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/csettle.c >mv -f .deps/wall.Tpo .deps/wall.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT clincs.lo -MD -MP -MF .deps/clincs.Tpo -c -o clincs.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/clincs.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT wnblist.lo -MD -MP -MF .deps/wnblist.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/wnblist.c -o wnblist.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT csettle.lo -MD -MP -MF .deps/csettle.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/csettle.c -o csettle.o >mv -f .deps/wnblist.Tpo .deps/wnblist.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT qmmm.lo -MD -MP -MF .deps/qmmm.Tpo -c -o qmmm.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/qmmm.c >mv -f .deps/csettle.Tpo .deps/csettle.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_fft.lo -MD -MP -MF .deps/gmx_fft.Tpo -c -o gmx_fft.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/gmx_fft.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT clincs.lo -MD -MP -MF .deps/clincs.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/clincs.c -o clincs.o >mv -f .deps/clincs.Tpo .deps/clincs.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_parallel_3dfft.lo -MD -MP -MF .deps/gmx_parallel_3dfft.Tpo -c -o gmx_parallel_3dfft.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/gmx_parallel_3dfft.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_fft.lo -MD -MP -MF .deps/gmx_fft.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/gmx_fft.c -o gmx_fft.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT qmmm.lo -MD -MP -MF .deps/qmmm.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/qmmm.c -o qmmm.o >mv -f .deps/gmx_fft.Tpo .deps/gmx_fft.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_wallcycle.lo -MD -MP -MF .deps/gmx_wallcycle.Tpo -c -o gmx_wallcycle.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/gmx_wallcycle.c >mv -f .deps/qmmm.Tpo .deps/qmmm.Plo > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_parallel_3dfft.lo -MD -MP -MF .deps/gmx_parallel_3dfft.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/gmx_parallel_3dfft.c -o gmx_parallel_3dfft.o >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT qm_gaussian.lo -MD -MP -MF .deps/qm_gaussian.Tpo -c -o qm_gaussian.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/qm_gaussian.c >mv -f .deps/gmx_parallel_3dfft.Tpo .deps/gmx_parallel_3dfft.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_fft_fftw3.lo -MD -MP -MF .deps/gmx_fft_fftw3.Tpo -c -o gmx_fft_fftw3.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/gmx_fft_fftw3.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT qm_gaussian.lo -MD -MP -MF .deps/qm_gaussian.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/qm_gaussian.c -o qm_gaussian.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_wallcycle.lo -MD -MP -MF .deps/gmx_wallcycle.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/gmx_wallcycle.c -o gmx_wallcycle.o >mv -f .deps/gmx_wallcycle.Tpo .deps/gmx_wallcycle.Plo >mv -f .deps/qm_gaussian.Tpo .deps/qm_gaussian.Plo > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmx_fft_fftw3.lo -MD -MP -MF .deps/gmx_fft_fftw3.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/mdlib/gmx_fft_fftw3.c -o gmx_fft_fftw3.o >mv -f .deps/gmx_fft_fftw3.Tpo .deps/gmx_fft_fftw3.Plo >/bin/sh ../../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -march=prescott -pipe -version-info 5:0:0 -Wl,-O1 -g -all-static -o libmd.la -rpath /usr/lib calcmu.lo calcvir.lo constr.lo coupling.lo domdec.lo domdec_con.lo domdec_network.lo domdec_setup.lo domdec_top.lo ebin.lo edsam.lo ewald.lo fftgrid.lo force.lo ghat.lo init.lo mdatom.lo mdebin.lo minimize.lo mvxvf.lo ns.lo nsgrid.lo perf_est.lo pme.lo pme_pp.lo pppm.lo partdec.lo pull.lo pullutil.lo rf_util.lo shakef.lo sim_util.lo shellfc.lo stat.lo tables.lo tgroup.lo update.lo vcm.lo vsite.lo wall.lo wnblist.lo csettle.lo clincs.lo qmmm.lo gmx_fft.lo gmx_parallel_3dfft.lo gmx_wallcycle.lo qm_gaussian.lo gmx_fft_fftw3.lo ../gmxlib/libgmx.la -lnsl -lfftw3f -lm -lblas -llapack -ldmalloc -lSM -lICE -lX11 >mkdir .libs >libtool: link: warning: `/usr/lib/gcc/i686-pc-linux-gnu/4.4.3/../../..//libfftw3f.la' seems to be moved >libtool: link: warning: `/usr/lib/gcc/i686-pc-linux-gnu/4.4.3/../../..//libSM.la' seems to be moved >libtool: link: warning: `/usr/lib/gcc/i686-pc-linux-gnu/4.4.3/../../..//libICE.la' seems to be moved >libtool: link: warning: `/usr/lib/gcc/i686-pc-linux-gnu/4.4.3/../../..//libX11.la' seems to be moved >i686-pc-linux-gnu-ar cru .libs/libmd.a calcmu.o calcvir.o constr.o coupling.o domdec.o domdec_con.o domdec_network.o domdec_setup.o domdec_top.o ebin.o edsam.o ewald.o fftgrid.o force.o ghat.o init.o mdatom.o mdebin.o minimize.o mvxvf.o ns.o nsgrid.o perf_est.o pme.o pme_pp.o pppm.o partdec.o pull.o pullutil.o rf_util.o shakef.o sim_util.o shellfc.o stat.o tables.o tgroup.o update.o vcm.o vsite.o wall.o wnblist.o csettle.o clincs.o qmmm.o gmx_fft.o gmx_parallel_3dfft.o gmx_wallcycle.o qm_gaussian.o gmx_fft_fftw3.o >i686-pc-linux-gnu-ranlib .libs/libmd.a >creating libmd.la >(cd .libs && rm -f libmd.la && ln -s ../libmd.la libmd.la) >make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/mdlib' >Making all in kernel >make[3]: Entering directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/kernel' >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT add_par.lo -MD -MP -MF .deps/add_par.Tpo -c -o add_par.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/add_par.c >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT compute_io.lo -MD -MP -MF .deps/compute_io.Tpo -c -o compute_io.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/compute_io.c >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT convparm.lo -MD -MP -MF .deps/convparm.Tpo -c -o convparm.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/convparm.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT convparm.lo -MD -MP -MF .deps/convparm.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/convparm.c -o convparm.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT compute_io.lo -MD -MP -MF .deps/compute_io.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/compute_io.c -o compute_io.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT add_par.lo -MD -MP -MF .deps/add_par.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/add_par.c -o add_par.o >mv -f .deps/convparm.Tpo .deps/convparm.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gen_ad.lo -MD -MP -MF .deps/gen_ad.Tpo -c -o gen_ad.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/gen_ad.c >mv -f .deps/compute_io.Tpo .deps/compute_io.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gen_vsite.lo -MD -MP -MF .deps/gen_vsite.Tpo -c -o gen_vsite.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/gen_vsite.c >mv -f .deps/add_par.Tpo .deps/add_par.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT genhydro.lo -MD -MP -MF .deps/genhydro.Tpo -c -o genhydro.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/genhydro.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gen_ad.lo -MD -MP -MF .deps/gen_ad.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/gen_ad.c -o gen_ad.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gen_vsite.lo -MD -MP -MF .deps/gen_vsite.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/gen_vsite.c -o gen_vsite.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT genhydro.lo -MD -MP -MF .deps/genhydro.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/genhydro.c -o genhydro.o >mv -f .deps/gen_ad.Tpo .deps/gen_ad.Plo >mv -f .deps/gen_vsite.Tpo .deps/gen_vsite.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmxcpp.lo -MD -MP -MF .deps/gmxcpp.Tpo -c -o gmxcpp.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/gmxcpp.c >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gpp_atomtype.lo -MD -MP -MF .deps/gpp_atomtype.Tpo -c -o gpp_atomtype.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/gpp_atomtype.c >mv -f .deps/genhydro.Tpo .deps/genhydro.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gpp_bond_atomtype.lo -MD -MP -MF .deps/gpp_bond_atomtype.Tpo -c -o gpp_bond_atomtype.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/gpp_bond_atomtype.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmxcpp.lo -MD -MP -MF .deps/gmxcpp.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/gmxcpp.c -o gmxcpp.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gpp_atomtype.lo -MD -MP -MF .deps/gpp_atomtype.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/gpp_atomtype.c -o gpp_atomtype.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gpp_bond_atomtype.lo -MD -MP -MF .deps/gpp_bond_atomtype.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/gpp_bond_atomtype.c -o gpp_bond_atomtype.o >mv -f .deps/gmxcpp.Tpo .deps/gmxcpp.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT h_db.lo -MD -MP -MF .deps/h_db.Tpo -c -o h_db.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/h_db.c >mv -f .deps/gpp_bond_atomtype.Tpo .deps/gpp_bond_atomtype.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT hackblock.lo -MD -MP -MF .deps/hackblock.Tpo -c -o hackblock.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/hackblock.c >mv -f .deps/gpp_atomtype.Tpo .deps/gpp_atomtype.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT hizzie.lo -MD -MP -MF .deps/hizzie.Tpo -c -o hizzie.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/hizzie.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT hackblock.lo -MD -MP -MF .deps/hackblock.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/hackblock.c -o hackblock.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT h_db.lo -MD -MP -MF .deps/h_db.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/h_db.c -o h_db.o >mv -f .deps/h_db.Tpo .deps/h_db.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pdb2top.lo -MD -MP -MF .deps/pdb2top.Tpo -c -o pdb2top.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/pdb2top.c >mv -f .deps/hackblock.Tpo .deps/hackblock.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pgutil.lo -MD -MP -MF .deps/pgutil.Tpo -c -o pgutil.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/pgutil.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT hizzie.lo -MD -MP -MF .deps/hizzie.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/hizzie.c -o hizzie.o >mv -f .deps/hizzie.Tpo .deps/hizzie.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT readir.lo -MD -MP -MF .deps/readir.Tpo -c -o readir.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/readir.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pdb2top.lo -MD -MP -MF .deps/pdb2top.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/pdb2top.c -o pdb2top.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pgutil.lo -MD -MP -MF .deps/pgutil.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/pgutil.c -o pgutil.o >mv -f .deps/pgutil.Tpo .deps/pgutil.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT readpull.lo -MD -MP -MF .deps/readpull.Tpo -c -o readpull.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/readpull.c >mv -f .deps/pdb2top.Tpo .deps/pdb2top.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT resall.lo -MD -MP -MF .deps/resall.Tpo -c -o resall.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/resall.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT readir.lo -MD -MP -MF .deps/readir.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/readir.c -o readir.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT readpull.lo -MD -MP -MF .deps/readpull.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/readpull.c -o readpull.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT resall.lo -MD -MP -MF .deps/resall.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/resall.c -o resall.o >mv -f .deps/readir.Tpo .deps/readir.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT sorting.lo -MD -MP -MF .deps/sorting.Tpo -c -o sorting.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/sorting.c >mv -f .deps/readpull.Tpo .deps/readpull.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT specbond.lo -MD -MP -MF .deps/specbond.Tpo -c -o specbond.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/specbond.c >mv -f .deps/resall.Tpo .deps/resall.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ter_db.lo -MD -MP -MF .deps/ter_db.Tpo -c -o ter_db.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/ter_db.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT sorting.lo -MD -MP -MF .deps/sorting.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/sorting.c -o sorting.o >mv -f .deps/sorting.Tpo .deps/sorting.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT tomorse.lo -MD -MP -MF .deps/tomorse.Tpo -c -o tomorse.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/tomorse.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT specbond.lo -MD -MP -MF .deps/specbond.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/specbond.c -o specbond.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ter_db.lo -MD -MP -MF .deps/ter_db.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/ter_db.c -o ter_db.o >mv -f .deps/specbond.Tpo .deps/specbond.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT topdirs.lo -MD -MP -MF .deps/topdirs.Tpo -c -o topdirs.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/topdirs.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT tomorse.lo -MD -MP -MF .deps/tomorse.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/tomorse.c -o tomorse.o >mv -f .deps/ter_db.Tpo .deps/ter_db.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT topexcl.lo -MD -MP -MF .deps/topexcl.Tpo -c -o topexcl.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/topexcl.c >mv -f .deps/tomorse.Tpo .deps/tomorse.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT topio.lo -MD -MP -MF .deps/topio.Tpo -c -o topio.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/topio.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT topdirs.lo -MD -MP -MF .deps/topdirs.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/topdirs.c -o topdirs.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT topexcl.lo -MD -MP -MF .deps/topexcl.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/topexcl.c -o topexcl.o >mv -f .deps/topdirs.Tpo .deps/topdirs.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT toppush.lo -MD -MP -MF .deps/toppush.Tpo -c -o toppush.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/toppush.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT topio.lo -MD -MP -MF .deps/topio.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/topio.c -o topio.o >mv -f .deps/topexcl.Tpo .deps/topexcl.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT topshake.lo -MD -MP -MF .deps/topshake.Tpo -c -o topshake.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/topshake.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT toppush.lo -MD -MP -MF .deps/toppush.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/toppush.c -o toppush.o >mv -f .deps/topio.Tpo .deps/topio.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT toputil.lo -MD -MP -MF .deps/toputil.Tpo -c -o toputil.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/toputil.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT topshake.lo -MD -MP -MF .deps/topshake.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/topshake.c -o topshake.o >mv -f .deps/toppush.Tpo .deps/toppush.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT tpbcmp.lo -MD -MP -MF .deps/tpbcmp.Tpo -c -o tpbcmp.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/tpbcmp.c >mv -f .deps/topshake.Tpo .deps/topshake.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT vsite_parm.lo -MD -MP -MF .deps/vsite_parm.Tpo -c -o vsite_parm.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/vsite_parm.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT toputil.lo -MD -MP -MF .deps/toputil.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/toputil.c -o toputil.o > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT tpbcmp.lo -MD -MP -MF .deps/tpbcmp.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/tpbcmp.c -o tpbcmp.o >mv -f .deps/tpbcmp.Tpo .deps/tpbcmp.Plo >/bin/sh ../../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT xlate.lo -MD -MP -MF .deps/xlate.Tpo -c -o xlate.lo /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/xlate.c >mv -f .deps/toputil.Tpo .deps/toputil.Plo >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT grompp.o -MD -MP -MF .deps/grompp.Tpo -c -o grompp.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/grompp.c >mv -f .deps/grompp.Tpo .deps/grompp.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT glaasje.o -MD -MP -MF .deps/glaasje.Tpo -c -o glaasje.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/glaasje.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT vsite_parm.lo -MD -MP -MF .deps/vsite_parm.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/vsite_parm.c -o vsite_parm.o >mv -f .deps/glaasje.Tpo .deps/glaasje.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gctio.o -MD -MP -MF .deps/gctio.Tpo -c -o gctio.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/gctio.c >mv -f .deps/vsite_parm.Tpo .deps/vsite_parm.Plo >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT ionize.o -MD -MP -MF .deps/ionize.Tpo -c -o ionize.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/ionize.c > i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT xlate.lo -MD -MP -MF .deps/xlate.Tpo -c /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/xlate.c -o xlate.o >mv -f .deps/gctio.Tpo .deps/gctio.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT do_gct.o -MD -MP -MF .deps/do_gct.Tpo -c -o do_gct.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/do_gct.c >mv -f .deps/ionize.Tpo .deps/ionize.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT repl_ex.o -MD -MP -MF .deps/repl_ex.Tpo -c -o repl_ex.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/repl_ex.c >mv -f .deps/xlate.Tpo .deps/xlate.Plo >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT xutils.o -MD -MP -MF .deps/xutils.Tpo -c -o xutils.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/xutils.c >mv -f .deps/repl_ex.Tpo .deps/repl_ex.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT md.o -MD -MP -MF .deps/md.Tpo -c -o md.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/md.c >mv -f .deps/do_gct.Tpo .deps/do_gct.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT mdrun.o -MD -MP -MF .deps/mdrun.Tpo -c -o mdrun.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/mdrun.c >mv -f .deps/xutils.Tpo .deps/xutils.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT genalg.o -MD -MP -MF .deps/genalg.Tpo -c -o genalg.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/genalg.c >mv -f .deps/genalg.Tpo .deps/genalg.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT tpbconv.o -MD -MP -MF .deps/tpbconv.Tpo -c -o tpbconv.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/tpbconv.c >mv -f .deps/mdrun.Tpo .deps/mdrun.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT pdb2gmx.o -MD -MP -MF .deps/pdb2gmx.Tpo -c -o pdb2gmx.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/pdb2gmx.c >mv -f .deps/md.Tpo .deps/md.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT protonate.o -MD -MP -MF .deps/protonate.Tpo -c -o protonate.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/protonate.c >mv -f .deps/tpbconv.Tpo .deps/tpbconv.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT luck.o -MD -MP -MF .deps/luck.Tpo -c -o luck.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/luck.c >mv -f .deps/pdb2gmx.Tpo .deps/pdb2gmx.Po >mv -f .deps/protonate.Tpo .deps/protonate.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmxdump.o -MD -MP -MF .deps/gmxdump.Tpo -c -o gmxdump.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/gmxdump.c >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT gmxcheck.o -MD -MP -MF .deps/gmxcheck.Tpo -c -o gmxcheck.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/gmxcheck.c >mv -f .deps/luck.Tpo .deps/luck.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT x2top.o -MD -MP -MF .deps/x2top.Tpo -c -o x2top.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/x2top.c >mv -f .deps/gmxcheck.Tpo .deps/gmxcheck.Po >i686-pc-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel -I../../src -I/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/include -DGMXLIBDIR=\"/usr/share/top\" -march=prescott -pipe -MT nm2type.o -MD -MP -MF .deps/nm2type.Tpo -c -o nm2type.o /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7/src/kernel/nm2type.c >mv -f .deps/gmxdump.Tpo .deps/gmxdump.Po >/bin/sh ../../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -march=prescott -pipe -Wl,-O1 -g -all-static -o libgmxpreprocess.la add_par.lo compute_io.lo convparm.lo gen_ad.lo gen_vsite.lo genhydro.lo gmxcpp.lo gpp_atomtype.lo gpp_bond_atomtype.lo h_db.lo hackblock.lo hizzie.lo pdb2top.lo pgutil.lo readir.lo readpull.lo resall.lo sorting.lo specbond.lo ter_db.lo tomorse.lo topdirs.lo topexcl.lo topio.lo toppush.lo topshake.lo toputil.lo tpbcmp.lo vsite_parm.lo xlate.lo -lnsl -lfftw3f -lm -lblas -llapack -ldmalloc -lSM -lICE -lX11 >mv -f .deps/x2top.Tpo .deps/x2top.Po >mv -f .deps/nm2type.Tpo .deps/nm2type.Po >mkdir .libs >i686-pc-linux-gnu-ar cru .libs/libgmxpreprocess.a add_par.o compute_io.o convparm.o gen_ad.o gen_vsite.o genhydro.o gmxcpp.o gpp_atomtype.o gpp_bond_atomtype.o h_db.o hackblock.o hizzie.o pdb2top.o pgutil.o readir.o readpull.o resall.o sorting.o specbond.o ter_db.o tomorse.o topdirs.o topexcl.o topio.o toppush.o topshake.o toputil.o tpbcmp.o vsite_parm.o xlate.o >i686-pc-linux-gnu-ranlib .libs/libgmxpreprocess.a >creating libgmxpreprocess.la >(cd .libs && rm -f libgmxpreprocess.la && ln -s ../libgmxpreprocess.la libgmxpreprocess.la) >/bin/sh ../../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -march=prescott -pipe -Wl,-O1 -g -all-static -o grompp grompp.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lnsl -lfftw3f -lm -lblas -llapack -ldmalloc -lSM -lICE -lX11 >/bin/sh ../../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -march=prescott -pipe -Wl,-O1 -g -all-static -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lnsl -lfftw3f -lm -lblas -llapack -ldmalloc -lSM -lICE -lX11 >/bin/sh ../../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -march=prescott -pipe -Wl,-O1 -g -all-static -o tpbconv tpbconv.o libgmxpreprocess.la ../mdlib/libmd.la ../gmxlib/libgmx.la -lnsl -lfftw3f -lm -lblas -llapack -ldmalloc -lSM -lICE -lX11 >i686-pc-linux-gnu-gcc -march=prescott -pipe -Wl,-O1 -g -static -o tpbconv tpbconv.o ./.libs/libgmxpreprocess.a ../mdlib/.libs/libmd.a /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/.libs/libgmx.a ../gmxlib/.libs/libgmx.a -lnsl /usr/lib/libfftw3f.a -lm -lblas -llapack -ldmalloc /usr/lib/libSM.a -luuid /usr/lib/libICE.a /usr/lib/libX11.a /usr/lib/libxcb.a /usr/lib/libXau.so /usr/lib/libXdmcp.so -ldl >i686-pc-linux-gnu-gcc -march=prescott -pipe -Wl,-O1 -g -static -o grompp grompp.o ./.libs/libgmxpreprocess.a ../mdlib/.libs/libmd.a /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/.libs/libgmx.a ../gmxlib/.libs/libgmx.a -lnsl /usr/lib/libfftw3f.a -lm -lblas -llapack -ldmalloc /usr/lib/libSM.a -luuid /usr/lib/libICE.a /usr/lib/libX11.a /usr/lib/libxcb.a /usr/lib/libXau.so /usr/lib/libXdmcp.so -ldl >/usr/lib/gcc/i686-pc-linux-gnu/4.4.3/../../../../i686-pc-linux-gnu/bin/ld: attempted static link of dynamic object `/usr/lib/libXau.so' >collect2: ld returned 1 exit status >make[3]: *** [tpbconv] Error 1 >make[3]: *** Waiting for unfinished jobs.... >i686-pc-linux-gnu-gcc -march=prescott -pipe -Wl,-O1 -g -static -o mdrun glaasje.o gctio.o ionize.o do_gct.o repl_ex.o xutils.o md.o mdrun.o genalg.o ./.libs/libgmxpreprocess.a ../mdlib/.libs/libmd.a /var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/gmxlib/.libs/libgmx.a ../gmxlib/.libs/libgmx.a -lnsl /usr/lib/libfftw3f.a -lm -lblas -llapack -ldmalloc /usr/lib/libSM.a -luuid /usr/lib/libICE.a /usr/lib/libX11.a /usr/lib/libxcb.a /usr/lib/libXau.so /usr/lib/libXdmcp.so -ldl >/usr/lib/gcc/i686-pc-linux-gnu/4.4.3/../../../../i686-pc-linux-gnu/bin/ld: attempted static link of dynamic object `/usr/lib/libXau.so' >collect2: ld returned 1 exit status >make[3]: *** [grompp] Error 1 >/usr/lib/gcc/i686-pc-linux-gnu/4.4.3/../../../../i686-pc-linux-gnu/bin/ld: attempted static link of dynamic object `/usr/lib/libXau.so' >collect2: ld returned 1 exit status >make[3]: *** [mdrun] Error 1 >make[3]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src/kernel' >make[2]: *** [all-recursive] Error 1 >make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src' >make[1]: *** [all] Error 2 >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7-single/src' >make: *** [all-recursive] Error 1 > [31;01m*[0m ERROR: sci-chemistry/gromacs-4.0.7-r3 failed: > [31;01m*[0m emake for single precision failed > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 54: Called src_compile > [31;01m*[0m environment, line 3068: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m emake || die "emake for ${x} precision failed"; > [31;01m*[0m > [31;01m*[0m If you need support, post the output of 'emerge --info =sci-chemistry/gromacs-4.0.7-r3', > [31;01m*[0m the complete build log and the output of 'emerge -pqv =sci-chemistry/gromacs-4.0.7-r3'. > [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/temp/environment'. > [31;01m*[0m S: '/var/tmp/portage/sci-chemistry/gromacs-4.0.7-r3/work/gromacs-4.0.7'
<b>You cannot view the attachment while viewing its details because your browser does not support IFRAMEs. <a href="attachment.cgi?id=237055">View the attachment on a separate page</a>.</b>
View Attachment As Raw
Actions:
View
Attachments on
bug 326331
: 237055 |
237057
