build.log

mpi-dotnet-1.0.0:20100522-132800.log (text/plain), 17.98 KB, created by Pacho Ramos on 2010-05-22 13:34:10 UTC

 [32;01m*[0m CPV:  sys-cluster/mpi-dotnet-1.0.0
 [32;01m*[0m REPO: gentoo
 [32;01m*[0m USE:  amd64 elibc_glibc kernel_linux multilib test userland_GNU
>>> Unpacking source...
>>> Unpacking mpi.net-1.0.0.tar.gz to /var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/work
 [32;01m*[0m Applying configure.ac.patch ...
[A[149C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying Makefile.am.patch ...
[A[149C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Applying Unsafe.pl.patch ...
[A[149C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/work/mpi.net-1.0.0' ...
 [32;01m*[0m Running aclocal ...
[A[149C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running libtoolize --copy --force --install --automake ...
[A[149C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running aclocal ...
[A[149C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running autoconf ...
[A[149C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running automake --add-missing --copy --foreign ...
[A[149C  [34;01m[ [32;01mok[34;01m ][0m
 [32;01m*[0m Running elibtoolize in: mpi.net-1.0.0/Config
 [32;01m*[0m   Applying portage-2.2.patch ...
 [32;01m*[0m   Applying sed-1.5.6.patch ...
 [32;01m*[0m   Applying as-needed-2.2.6.patch ...
>>> Source unpacked in /var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/work
>>> Compiling source in /var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/work/mpi.net-1.0.0 ...
 * econf: updating mpi.net-1.0.0/Config/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating mpi.net-1.0.0/Config/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 --enable-shared --enable-static
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for a BSD-compatible install... /usr/bin/install -c
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for style of include used by make... GNU
checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes
checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of x86_64-pc-linux-gnu-gcc... gcc3
checking for a sed that does not truncate output... /bin/sed
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for fgrep... /bin/grep -F
checking for ld used by x86_64-pc-linux-gnu-gcc... /usr/x86_64-pc-linux-gnu/bin/ld
checking if the linker (/usr/x86_64-pc-linux-gnu/bin/ld) is GNU ld... yes
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B
checking the name lister (/usr/bin/nm -B) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 1572864
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking for /usr/x86_64-pc-linux-gnu/bin/ld option to reload object files... -r
checking for x86_64-pc-linux-gnu-objdump... x86_64-pc-linux-gnu-objdump
checking how to recognize dependent libraries... pass_all
checking for x86_64-pc-linux-gnu-ar... x86_64-pc-linux-gnu-ar
checking for x86_64-pc-linux-gnu-strip... x86_64-pc-linux-gnu-strip
checking for x86_64-pc-linux-gnu-ranlib... x86_64-pc-linux-gnu-ranlib
checking command to parse /usr/bin/nm -B output from x86_64-pc-linux-gnu-gcc object... ok
checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if x86_64-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no
checking for x86_64-pc-linux-gnu-gcc option to produce PIC... -fPIC -DPIC
checking if x86_64-pc-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes
checking if x86_64-pc-linux-gnu-gcc static flag -static works... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... yes
checking if x86_64-pc-linux-gnu-gcc supports -c -o file.o... (cached) yes
checking whether the x86_64-pc-linux-gnu-gcc linker (/usr/x86_64-pc-linux-gnu/bin/ld -m elf_x86_64) supports shared libraries... yes
checking whether -lc should be explicitly linked in... no
checking dynamic linker characteristics... GNU/Linux ld.so
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
checking for csc... no
checking for gmcs... /usr/bin/gmcs
checking for mono... /usr/bin/mono
checking for ilasm2... /usr/bin/ilasm2
checking for sed... (cached) /bin/sed
checking for perl... /usr/bin/perl
checking for mpicc... mpicc
checking for MPI_Init... yes
checking for mpi.h... yes
checking for mpiexec... /usr/bin/mpiexec
checking which MPI is available... Open MPI
configure: creating ./config.status
config.status: creating MPI/MPI.dll.config
config.status: creating Tests/runtest.sh
config.status: creating Makefile
config.status: creating MPIUtils/Makefile
config.status: creating MPI/Makefile
config.status: creating Examples/Makefile
config.status: creating Examples/Hello/Makefile
config.status: creating Examples/Hostnames/Makefile
config.status: creating Examples/Pi/Makefile
config.status: creating Examples/PingPong/Makefile
config.status: creating Examples/Ring/Makefile
config.status: creating Benchmarks/Makefile
config.status: creating Benchmarks/Netpipe_cs/Makefile
config.status: creating Benchmarks/Netcoll_cs/Makefile
config.status: creating Tests/Makefile
config.status: creating Tests/AllgatherTest/Makefile
config.status: creating Tests/AllreduceTest/Makefile
config.status: creating Tests/AlltoallTest/Makefile
config.status: creating Tests/AttributesTest/Makefile
config.status: creating Tests/BroadcastTest/Makefile
config.status: creating Tests/CartTest/Makefile
config.status: creating Tests/DatatypesTest/Makefile
config.status: creating Tests/ExceptionTest/Makefile
config.status: creating Tests/ExclusiveScanTest/Makefile
config.status: creating Tests/GatherTest/Makefile
config.status: creating Tests/GraphTest/Makefile
config.status: creating Tests/IntercommunicatorTest/Makefile
config.status: creating Tests/NonblockingTest/Makefile
config.status: creating Tests/ReduceScatterTest/Makefile
config.status: creating Tests/ReduceTest/Makefile
config.status: creating Tests/ScanTest/Makefile
config.status: creating Tests/ScatterTest/Makefile
config.status: executing depfiles commands
config.status: executing libtool commands
make -j2 
Making all in MPIUtils
make[1]: Entering directory `/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/work/mpi.net-1.0.0/MPIUtils'
/usr/bin/ilasm2 /dll /output:MPIUtils.dll /key:./MPIUtils.snk Memory.il
Assembling 'Memory.il' , no listing file, to dll --> 'MPIUtils.dll'

Signing assembly with the specified strongname keypair
Operation completed successfully
make[1]: Leaving directory `/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/work/mpi.net-1.0.0/MPIUtils'
Making all in MPI
make[1]: Entering directory `/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/work/mpi.net-1.0.0/MPI'
/usr/bin/perl ./Unsafe.pl  ./Unsafe.cs CustomUnsafe.cs cbridge.c
/usr/bin/perl ./Unsafe.pl  ./Unsafe.cs CustomUnsafe.cs cbridge.c
/bin/sh ../libtool --tag=CC --tag=CC   --mode=compile mpicc -DPACKAGE_NAME=\"MPI.NET\" -DPACKAGE_TARNAME=\"mpi-net\" -DPACKAGE_VERSION=\"0.6.0\" -DPACKAGE_STRING=\"MPI.NET\ 0.6.0\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"mpi-net\" -DVERSION=\"0.6.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_MPI=1 -I.     -march=native -O2 -pipe -MT cbridge.lo -MD -MP -MF .deps/cbridge.Tpo -c -o cbridge.lo cbridge.c
/usr/bin/gmcs -out:MPI.dll -unsafe -target:library -lib:../MPIUtils -reference:MPIUtils -optimize+  -define:BROKEN_IL_EMIT -define:BROKEN_NULL_DELEGATE -define:MPI_HANDLES_ARE_POINTERS -keyfile:./MPI.snk ./Attribute.cs ./CartesianCommunicator.cs ./Communicator.cs ./Comparison.cs ./DatatypeCache.cs ./Environment.cs ./Exceptions.cs ./GraphCommunicator.cs ./Group.cs ./Intercommunicator.cs ./Intracommunicator.cs ./Operation.cs ./Request.cs ./RequestList.cs ./Status.cs ./TagAllocator.cs ./TopologicalCommunicator.cs ./UnmanagedMemoryStream.cs CustomUnsafe.cs 
libtool: compile:  mpicc -DPACKAGE_NAME=\"MPI.NET\" -DPACKAGE_TARNAME=\"mpi-net\" -DPACKAGE_VERSION=\"0.6.0\" "-DPACKAGE_STRING=\"MPI.NET 0.6.0\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"mpi-net\" -DVERSION=\"0.6.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_MPI=1 -I. -march=native -O2 -pipe -MT cbridge.lo -MD -MP -MF .deps/cbridge.Tpo -c cbridge.c  -fPIC -DPIC -o .libs/cbridge.o
libtool: compile:  mpicc -DPACKAGE_NAME=\"MPI.NET\" -DPACKAGE_TARNAME=\"mpi-net\" -DPACKAGE_VERSION=\"0.6.0\" "-DPACKAGE_STRING=\"MPI.NET 0.6.0\"" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"mpi-net\" -DVERSION=\"0.6.0\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DLT_OBJDIR=\".libs/\" -DHAVE_MPI=1 -I. -march=native -O2 -pipe -MT cbridge.lo -MD -MP -MF .deps/cbridge.Tpo -c cbridge.c -o cbridge.o >/dev/null 2>&1
mv -f .deps/cbridge.Tpo .deps/cbridge.Plo
/bin/sh ../libtool --tag=CC --tag=CC   --mode=link mpicc  -march=native -O2 -pipe -version-info 0:6:0 -Wl,-O1 -o libmpinet.la -rpath /usr/lib64 cbridge.lo  -L/usr/lib64 -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil -lm -ldl 
libtool: link: x86_64-pc-linux-gnu-gcc -shared  .libs/cbridge.o   -L/usr/lib64 /usr/lib64/libmpi.so /usr/lib64/libopen-rte.so /usr/lib64/libopen-pal.so -lnsl -lutil -lm -ldl  -march=native -Wl,-O1   -pthread -Wl,-soname -Wl,libmpinet.so.0 -o .libs/libmpinet.so.0.0.6
libtool: link: (cd ".libs" && rm -f "libmpinet.so.0" && ln -s "libmpinet.so.0.0.6" "libmpinet.so.0")
libtool: link: (cd ".libs" && rm -f "libmpinet.so" && ln -s "libmpinet.so.0.0.6" "libmpinet.so")
libtool: link: x86_64-pc-linux-gnu-ar cru .libs/libmpinet.a  cbridge.o
libtool: link: x86_64-pc-linux-gnu-ranlib .libs/libmpinet.a
libtool: link: ( cd ".libs" && rm -f "libmpinet.la" && ln -s "../libmpinet.la" "libmpinet.la" )
Internal compiler error at ./Communicator.cs(1618,23):: exception caught while emitting MethodBuilder [Communicator::GatherFlattened_impl]

Unhandled Exception: Mono.CSharp.InternalErrorException: VerifyArgumentsCompat didn't find any problem with rejected candidate Void Gather_impl[T[]](Boolean, Int32, T[], Int32, T[][] ByRef)
  at Mono.CSharp.MethodGroupExpr.OverloadResolve (Mono.CSharp.ResolveContext ec, Mono.CSharp.Arguments& Arguments, Boolean may_fail, Location loc) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Invocation.DoResolveOverload (Mono.CSharp.ResolveContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Invocation.DoResolve (Mono.CSharp.ResolveContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Expression.Resolve (Mono.CSharp.ResolveContext ec, ResolveFlags flags) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Expression.Resolve (Mono.CSharp.ResolveContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.ExpressionStatement.ResolveStatement (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.StatementExpression.Resolve (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Block.Resolve (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.If.Resolve (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Block.Resolve (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.If.Resolve (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Block.Resolve (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Block.Resolve (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.ToplevelBlock.Resolve (Mono.CSharp.FlowBranching parent, Mono.CSharp.BlockContext rc, Mono.CSharp.ParametersCompiled ip, IMethodData md) [0x00000] in <filename unknown>:0 
make[1]: *** [MPI.dll] Error 1
make[1]: Leaving directory `/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/work/mpi.net-1.0.0/MPI'
make: *** [all-recursive] Error 1
>>> Source compiled.
 [32;01m*[0m Skipping make test/check due to ebuild restriction.
>>> Test phase [explicitly disabled]: sys-cluster/mpi-dotnet-1.0.0

>>> Install mpi-dotnet-1.0.0 into /var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/image/ category sys-cluster
make -j2 DESTDIR=/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/image/ install 
Making install in MPIUtils
make[1]: Entering directory `/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/work/mpi.net-1.0.0/MPIUtils'
make[2]: Entering directory `/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/work/mpi.net-1.0.0/MPIUtils'
test -z "/usr/lib64" || /bin/mkdir -p "/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/image//usr/lib64"
make[2]: Nothing to be done for `install-data-am'.
 /usr/bin/install -c 'MPIUtils.dll' '/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/image//usr/lib64/MPIUtils.dll'
make[2]: Leaving directory `/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/work/mpi.net-1.0.0/MPIUtils'
make[1]: Leaving directory `/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/work/mpi.net-1.0.0/MPIUtils'
Making install in MPI
make[1]: Entering directory `/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/work/mpi.net-1.0.0/MPI'
/usr/bin/gmcs -out:MPI.dll -unsafe -target:library -lib:../MPIUtils -reference:MPIUtils -optimize+  -define:BROKEN_IL_EMIT -define:BROKEN_NULL_DELEGATE -define:MPI_HANDLES_ARE_POINTERS -keyfile:./MPI.snk ./Attribute.cs ./CartesianCommunicator.cs ./Communicator.cs ./Comparison.cs ./DatatypeCache.cs ./Environment.cs ./Exceptions.cs ./GraphCommunicator.cs ./Group.cs ./Intercommunicator.cs ./Intracommunicator.cs ./Operation.cs ./Request.cs ./RequestList.cs ./Status.cs ./TagAllocator.cs ./TopologicalCommunicator.cs ./UnmanagedMemoryStream.cs CustomUnsafe.cs 
Internal compiler error at ./Communicator.cs(1618,23):: exception caught while emitting MethodBuilder [Communicator::GatherFlattened_impl]

Unhandled Exception: Mono.CSharp.InternalErrorException: VerifyArgumentsCompat didn't find any problem with rejected candidate Void Gather_impl[T[]](Boolean, Int32, T[], Int32, T[][] ByRef)
  at Mono.CSharp.MethodGroupExpr.OverloadResolve (Mono.CSharp.ResolveContext ec, Mono.CSharp.Arguments& Arguments, Boolean may_fail, Location loc) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Invocation.DoResolveOverload (Mono.CSharp.ResolveContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Invocation.DoResolve (Mono.CSharp.ResolveContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Expression.Resolve (Mono.CSharp.ResolveContext ec, ResolveFlags flags) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Expression.Resolve (Mono.CSharp.ResolveContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.ExpressionStatement.ResolveStatement (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.StatementExpression.Resolve (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Block.Resolve (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.If.Resolve (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Block.Resolve (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.If.Resolve (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Block.Resolve (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.Block.Resolve (Mono.CSharp.BlockContext ec) [0x00000] in <filename unknown>:0 
  at Mono.CSharp.ToplevelBlock.Resolve (Mono.CSharp.FlowBranching parent, Mono.CSharp.BlockContext rc, Mono.CSharp.ParametersCompiled ip, IMethodData md) [0x00000] in <filename unknown>:0 
make[1]: *** [MPI.dll] Error 1
make[1]: Leaving directory `/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/work/mpi.net-1.0.0/MPI'
make: *** [install-recursive] Error 1
 [31;01m*[0m ERROR: sys-cluster/mpi-dotnet-1.0.0 failed:
 [31;01m*[0m   Install failed
 [31;01m*[0m 
 [31;01m*[0m Call stack:
 [31;01m*[0m     ebuild.sh, line  54:  Called src_install
 [31;01m*[0m   environment, line 2952:  Called die
 [31;01m*[0m The specific snippet of code:
 [31;01m*[0m       emake DESTDIR="${D}" install || die "Install failed";
 [31;01m*[0m 
 [31;01m*[0m If you need support, post the output of 'emerge --info =sys-cluster/mpi-dotnet-1.0.0',
 [31;01m*[0m the complete build log and the output of 'emerge -pqv =sys-cluster/mpi-dotnet-1.0.0'.
 [31;01m*[0m The complete build log is located at '/var/log/portage/build/sys-cluster/mpi-dotnet-1.0.0:20100522-132800.log'.
 [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/temp/environment'.
 [31;01m*[0m S: '/var/tmp/portage/sys-cluster/mpi-dotnet-1.0.0/work/mpi.net-1.0.0'