Build log

autodock-4.2.3:20100518-000730.log (text/plain), 109.66 KB, created by Diego Elio Pettenò (RETIRED) on 2010-05-18 10:27:36 UTC

 * CPV:  sci-chemistry/autodock-4.2.3
 * REPO: gentoo
 * USE:  elibc_glibc kernel_linux test userland_GNU x86
error(7) trying to perform operation
operation failed
>>> Unpacking source...
>>> Unpacking autodocksuite-4.2.3-src.tar.gz to /var/tmp/portage/sci-chemistry/autodock-4.2.3/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/autodock-4.2.3/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src ...
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
 * Running eautoreconf in '/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock' ...
 * Running aclocal ...
  [ ok ]
 * Running autoconf ...
  [ ok ]
 * Running automake --add-missing --copy ...
  [ ok ]
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autogrid /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
 * Running eautoreconf in '/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autogrid' ...
 * Running aclocal ...
  [ ok ]
 * Running autoconf ...
  [ ok ]
 * Running automake --add-missing --copy ...
  [ ok ]
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src ...
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
 * econf: updating src/autodock/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating src/autodock/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating src/autogrid/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating src/autogrid/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for gawk... (cached) gawk
checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether i686-pc-linux-gnu-g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of i686-pc-linux-gnu-g++... gcc3
checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of i686-pc-linux-gnu-gcc... gcc3
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking for inline... inline
checking for size_t... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for gethostname... yes
checking for pow... no
checking for sqrt... no
checking for strncasecmp... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: executing depfiles commands
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autogrid /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
 * econf: updating src/autodock/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating src/autodock/config.guess with /usr/share/gnuconfig/config.guess
 * econf: updating src/autogrid/config.sub with /usr/share/gnuconfig/config.sub
 * econf: updating src/autogrid/config.guess with /usr/share/gnuconfig/config.guess
./configure --prefix=/usr --build=i686-pc-linux-gnu --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether i686-pc-linux-gnu-g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of i686-pc-linux-gnu-g++... gcc3
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc
checking whether we are using the GNU C compiler... yes
checking whether i686-pc-linux-gnu-gcc accepts -g... yes
checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed
checking dependency style of i686-pc-linux-gnu-gcc... gcc3
checking for sqrt in -lm... yes
checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for an ANSI C-conforming const... yes
checking whether struct tm is in sys/time.h or time.h... time.h
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for gethostname... yes
checking for pow... yes
checking for round... yes
checking for sqrt... yes
checking for strncasecmp... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: linking ../autodock/read_parameter_library.cc to read_parameter_library.cpp
config.status: executing depfiles commands
/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src ...
make -j14 -C autodock 
make: Entering directory `/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock'
rm -f default_parameters.h
csh ./paramdat2h.csh ./AD4_parameters.dat ./AD4.1_bound.dat > default_parameters.h
make  all-am
make[1]: Entering directory `/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock'
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT alea.o -MD -MP -MF .deps/alea.Tpo -c -o alea.o alea.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT analysis.o -MD -MP -MF .deps/analysis.Tpo -c -o analysis.o analysis.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT atom_parameter_manager.o -MD -MP -MF .deps/atom_parameter_manager.Tpo -c -o atom_parameter_manager.o atom_parameter_manager.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT banner.o -MD -MP -MF .deps/banner.Tpo -c -o banner.o banner.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT bestpdb.o -MD -MP -MF .deps/bestpdb.Tpo -c -o bestpdb.o bestpdb.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT calculateEnergies.o -MD -MP -MF .deps/calculateEnergies.Tpo -c -o calculateEnergies.o calculateEnergies.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT call_cpso.o -MD -MP -MF .deps/call_cpso.Tpo -c -o call_cpso.o call_cpso.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT call_glss.o -MD -MP -MF .deps/call_glss.Tpo -c -o call_glss.o call_glss.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT call_gs.o -MD -MP -MF .deps/call_gs.Tpo -c -o call_gs.o call_gs.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT call_ls.o -MD -MP -MF .deps/call_ls.Tpo -c -o call_ls.o call_ls.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT changeState.o -MD -MP -MF .deps/changeState.Tpo -c -o changeState.o changeState.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT check_header_float.o -MD -MP -MF .deps/check_header_float.Tpo -c -o check_header_float.o check_header_float.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT check_header_int.o -MD -MP -MF .deps/check_header_int.Tpo -c -o check_header_int.o check_header_int.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT check_header_line.o -MD -MP -MF .deps/check_header_line.Tpo -c -o check_header_line.o check_header_line.cc
mv -f .deps/alea.Tpo .deps/alea.Po
mv -f .deps/atom_parameter_manager.Tpo .deps/atom_parameter_manager.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT cluster_analysis.o -MD -MP -MF .deps/cluster_analysis.Tpo -c -o cluster_analysis.o cluster_analysis.cc
call_glss.cc: In function ‘State call_glss(Global_Search*, Local_Search*, State, unsigned int, unsigned int, int, unsigned int, Molecule*, Boole, Boole, Boole, GridMapSetInfo*, char*, int*)’:
call_glss.cc:481:23: warning: comparison between signed and unsigned integer expressions
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT clmode.o -MD -MP -MF .deps/clmode.Tpo -c -o clmode.o clmode.cc
mv -f .deps/check_header_float.Tpo .deps/check_header_float.Po
mv -f .deps/bestpdb.Tpo .deps/bestpdb.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT cnv_state_to_coords.o -MD -MP -MF .deps/cnv_state_to_coords.Tpo -c -o cnv_state_to_coords.o cnv_state_to_coords.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT com.o -MD -MP -MF .deps/com.Tpo -c -o com.o com.cc
mv -f .deps/check_header_int.Tpo .deps/check_header_int.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT conformation_sampler.o -MD -MP -MF .deps/conformation_sampler.Tpo -c -o conformation_sampler.o conformation_sampler.cc
mv -f .deps/calculateEnergies.Tpo .deps/calculateEnergies.Po
mv -f .deps/check_header_line.Tpo .deps/check_header_line.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT dimLibrary.o -MD -MP -MF .deps/dimLibrary.Tpo -c -o dimLibrary.o dimLibrary.cc
mv -f .deps/changeState.Tpo .deps/changeState.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT distdepdiel.o -MD -MP -MF .deps/distdepdiel.Tpo -c -o distdepdiel.o distdepdiel.cc
mv -f .deps/cluster_analysis.Tpo .deps/cluster_analysis.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT stateLibrary.o -MD -MP -MF .deps/stateLibrary.Tpo -c -o stateLibrary.o stateLibrary.cc
mv -f .deps/banner.Tpo .deps/banner.Po
mv -f .deps/cnv_state_to_coords.Tpo .deps/cnv_state_to_coords.Po
mv -f .deps/distdepdiel.Tpo .deps/distdepdiel.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT readfield.o -MD -MP -MF .deps/readfield.Tpo -c -o readfield.o readfield.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT readmap.o -MD -MP -MF .deps/readmap.Tpo -c -o readmap.o readmap.cc
mv -f .deps/analysis.Tpo .deps/analysis.Po
mv -f .deps/call_ls.Tpo .deps/call_ls.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT readPDBQT.o -MD -MP -MF .deps/readPDBQT.Tpo -c -o readPDBQT.o readPDBQT.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT read_parameter_library.o -MD -MP -MF .deps/read_parameter_library.Tpo -c -o read_parameter_library.o read_parameter_library.cc
mv -f .deps/com.Tpo .deps/com.Po
mv -f .deps/clmode.Tpo .deps/clmode.Po
readfield.cc: In function ‘void readfield(GridMapSetInfo*, char*, clock_t, tms)’:
readfield.cc:83:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
readfield.cc:109:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
readfield.cc:116:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
readfield.cc:123:47: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT eval.o -MD -MP -MF .deps/eval.Tpo -c -o eval.o eval.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT gencau.o -MD -MP -MF .deps/gencau.Tpo -c -o gencau.o gencau.cc
mv -f .deps/dimLibrary.Tpo .deps/dimLibrary.Po
mv -f .deps/readfield.Tpo .deps/readfield.Po
mv -f .deps/call_cpso.Tpo .deps/call_cpso.Po
mv -f .deps/gencau.Tpo .deps/gencau.Po
mv -f .deps/call_gs.Tpo .deps/call_gs.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT getrms.o -MD -MP -MF .deps/getrms.Tpo -c -o getrms.o getrms.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT get_atom_type.o -MD -MP -MF .deps/get_atom_type.Tpo -c -o get_atom_type.o get_atom_type.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT getInitialState.o -MD -MP -MF .deps/getInitialState.Tpo -c -o getInitialState.o getInitialState.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT getpdbcrds.o -MD -MP -MF .deps/getpdbcrds.Tpo -c -o getpdbcrds.o getpdbcrds.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -DCHECK_ISNAN -c ./gs.cc
mv -f .deps/stateLibrary.Tpo .deps/stateLibrary.Po
mv -f .deps/call_glss.Tpo .deps/call_glss.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT initautodock.o -MD -MP -MF .deps/initautodock.Tpo -c -o initautodock.o initautodock.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT input_state.o -MD -MP -MF .deps/input_state.Tpo -c -o input_state.o input_state.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT investigate.o -MD -MP -MF .deps/investigate.Tpo -c -o investigate.o investigate.cc
mv -f .deps/readmap.Tpo .deps/readmap.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT linpack.o -MD -MP -MF .deps/linpack.Tpo -c -o linpack.o linpack.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT ls.o -MD -MP -MF .deps/ls.Tpo -c -o ls.o ls.cc
mv -f .deps/getrms.Tpo .deps/getrms.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT mapping.o -MD -MP -MF .deps/mapping.Tpo -c -o mapping.o mapping.cc
mv -f .deps/get_atom_type.Tpo .deps/get_atom_type.Po
input_state.cc: In function ‘int input_state(State*, FILE*, char*, int, int*, Real*, Real*, char*)’:
input_state.cc:68:39: warning: ignoring return value of ‘char* fgets(char*, int, FILE*)’, declared with attribute warn_unused_result
mv -f .deps/read_parameter_library.Tpo .deps/read_parameter_library.Po
mv -f .deps/input_state.Tpo .deps/input_state.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT minmeanmax.o -MD -MP -MF .deps/minmeanmax.Tpo -c -o minmeanmax.o minmeanmax.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT mkNewState.o -MD -MP -MF .deps/mkNewState.Tpo -c -o mkNewState.o mkNewState.cc
mv -f .deps/getpdbcrds.Tpo .deps/getpdbcrds.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT mkTorTree.o -MD -MP -MF .deps/mkTorTree.Tpo -c -o mkTorTree.o mkTorTree.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT mkRandomState.o -MD -MP -MF .deps/mkRandomState.Tpo -c -o mkRandomState.o mkRandomState.cc
mv -f .deps/mapping.Tpo .deps/mapping.Po
mv -f .deps/getInitialState.Tpo .deps/getInitialState.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT nonbonds.o -MD -MP -MF .deps/nonbonds.Tpo -c -o nonbonds.o nonbonds.cc
mv -f .deps/linpack.Tpo .deps/linpack.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT openfile.o -MD -MP -MF .deps/openfile.Tpo -c -o openfile.o openfile.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT output_state.o -MD -MP -MF .deps/output_state.Tpo -c -o output_state.o output_state.cc
mv -f .deps/mkNewState.Tpo .deps/mkNewState.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT parse_dpf_line.o -MD -MP -MF .deps/parse_dpf_line.Tpo -c -o parse_dpf_line.o parse_dpf_line.cc
mv -f .deps/minmeanmax.Tpo .deps/minmeanmax.Po
In file included from nonbonds.cc:35:0:
mdist.h: In function ‘void mdist()’:
mdist.h:89:5: warning: operation on ‘mindist[0][0]’ may be undefined
mdist.h:89:34: warning: operation on ‘maxdist[0][0]’ may be undefined
mdist.h:96:5: warning: operation on ‘mindist[1][1]’ may be undefined
mdist.h:96:36: warning: operation on ‘maxdist[1][1]’ may be undefined
In file included from nonbonds.cc:35:0:
mdist.h:102:5: warning: operation on ‘mindist[2][2]’ may be undefined
mdist.h:102:34: warning: operation on ‘maxdist[2][2]’ may be undefined
mdist.h:107:5: warning: operation on ‘mindist[3][3]’ may be undefined
mdist.h:107:33: warning: operation on ‘maxdist[3][3]’ may be undefined
mdist.h:111:5: warning: operation on ‘mindist[4][4]’ may be undefined
mdist.h:111:33: warning: operation on ‘maxdist[4][4]’ may be undefined
mdist.h:114:5: warning: operation on ‘mindist[5][5]’ may be undefined
mdist.h:114:33: warning: operation on ‘maxdist[5][5]’ may be undefined
mdist.h:116:5: warning: operation on ‘mindist[6][6]’ may be undefined
mdist.h:116:33: warning: operation on ‘maxdist[6][6]’ may be undefined
nonbonds.cc: In function ‘void printbonds(int, const int (*)[6], const char*, int)’:
nonbonds.cc:227:24: warning: format not a string literal and no format arguments
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT parse_param_line.o -MD -MP -MF .deps/parse_param_line.Tpo -c -o parse_param_line.o parse_param_line.cc
mv -f .deps/mkRandomState.Tpo .deps/mkRandomState.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT parse_PDBQT_line.o -MD -MP -MF .deps/parse_PDBQT_line.Tpo -c -o parse_PDBQT_line.o parse_PDBQT_line.cc
mv -f .deps/readPDBQT.Tpo .deps/readPDBQT.Po
mv -f .deps/mkTorTree.Tpo .deps/mkTorTree.Po
mv -f .deps/openfile.Tpo .deps/openfile.Po
mv -f .deps/parse_dpf_line.Tpo .deps/parse_dpf_line.Po
mv -f .deps/initautodock.Tpo .deps/initautodock.Po
mv -f .deps/output_state.Tpo .deps/output_state.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT parse_trj_line.o -MD -MP -MF .deps/parse_trj_line.Tpo -c -o parse_trj_line.o parse_trj_line.cc
mv -f .deps/investigate.Tpo .deps/investigate.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT parsetypes.o -MD -MP -MF .deps/parsetypes.Tpo -c -o parsetypes.o parsetypes.cc
mv -f .deps/eval.Tpo .deps/eval.Po
mv -f .deps/parse_param_line.Tpo .deps/parse_param_line.Po
mv -f .deps/nonbonds.Tpo .deps/nonbonds.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT print_2x.o -MD -MP -MF .deps/print_2x.Tpo -c -o print_2x.o print_2x.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT print_atomic_energies.o -MD -MP -MF .deps/print_atomic_energies.Tpo -c -o print_atomic_energies.o print_atomic_energies.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT print_avsfld.o -MD -MP -MF .deps/print_avsfld.Tpo -c -o print_avsfld.o print_avsfld.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT writePDBQT.o -MD -MP -MF .deps/writePDBQT.Tpo -c -o writePDBQT.o writePDBQT.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT print_rem.o -MD -MP -MF .deps/print_rem.Tpo -c -o print_rem.o print_rem.cc
mv -f .deps/parse_PDBQT_line.Tpo .deps/parse_PDBQT_line.Po
mv -f .deps/parse_trj_line.Tpo .deps/parse_trj_line.Po
mv -f .deps/parsetypes.Tpo .deps/parsetypes.Po
print_2x.cc: In function ‘void print_2x(FILE*, FILE*, const char*)’:
print_2x.cc:40:27: warning: format not a string literal and no format arguments
print_2x.cc:41:27: warning: format not a string literal and no format arguments
mv -f .deps/print_2x.Tpo .deps/print_2x.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT printdate.o -MD -MP -MF .deps/printdate.Tpo -c -o printdate.o printdate.cc
mv -f .deps/print_rem.Tpo .deps/print_rem.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT printEnergies.o -MD -MP -MF .deps/printEnergies.Tpo -c -o printEnergies.o printEnergies.cc
mv -f .deps/conformation_sampler.Tpo .deps/conformation_sampler.Po
mv -f .deps/print_atomic_energies.Tpo .deps/print_atomic_energies.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT printhms.o -MD -MP -MF .deps/printhms.Tpo -c -o printhms.o printhms.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT prClusterHist.o -MD -MP -MF .deps/prClusterHist.Tpo -c -o prClusterHist.o prClusterHist.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT prInitialState.o -MD -MP -MF .deps/prInitialState.Tpo -c -o prInitialState.o prInitialState.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT prTorConList.o -MD -MP -MF .deps/prTorConList.Tpo -c -o prTorConList.o prTorConList.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT qmultiply.o -MD -MP -MF .deps/qmultiply.Tpo -c -o qmultiply.o qmultiply.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT qtransform.o -MD -MP -MF .deps/qtransform.Tpo -c -o qtransform.o qtransform.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT quicksort.o -MD -MP -MF .deps/quicksort.Tpo -c -o quicksort.o quicksort.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT ranlib.o -MD -MP -MF .deps/ranlib.Tpo -c -o ranlib.o ranlib.cc
mv -f .deps/print_avsfld.Tpo .deps/print_avsfld.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT rep.o -MD -MP -MF .deps/rep.Tpo -c -o rep.o rep.cc
mv -f .deps/printdate.Tpo .deps/printdate.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT scauchy.o -MD -MP -MF .deps/scauchy.Tpo -c -o scauchy.o scauchy.cc
mv -f .deps/printhms.Tpo .deps/printhms.Po
mv -f .deps/ls.Tpo .deps/ls.Po
mv -f .deps/quicksort.Tpo .deps/quicksort.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT setflags.o -MD -MP -MF .deps/setflags.Tpo -c -o setflags.o setflags.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT simanneal.o -MD -MP -MF .deps/simanneal.Tpo -c -o simanneal.o simanneal.cc
mv -f .deps/scauchy.Tpo .deps/scauchy.Po
mv -f .deps/prTorConList.Tpo .deps/prTorConList.Po
mv -f .deps/prInitialState.Tpo .deps/prInitialState.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT sort_enrg.o -MD -MP -MF .deps/sort_enrg.Tpo -c -o sort_enrg.o sort_enrg.cc
mv -f .deps/qtransform.Tpo .deps/qtransform.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT stack.o -MD -MP -MF .deps/stack.Tpo -c -o stack.o stack.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT stop.o -MD -MP -MF .deps/stop.Tpo -c -o stop.o stop.cc
mv -f .deps/prClusterHist.Tpo .deps/prClusterHist.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT strindex.o -MD -MP -MF .deps/strindex.Tpo -c -o strindex.o strindex.cc
mv -f .deps/sort_enrg.Tpo .deps/sort_enrg.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT success.o -MD -MP -MF .deps/success.Tpo -c -o success.o success.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT support.o -MD -MP -MF .deps/support.Tpo -c -o support.o support.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT swap.o -MD -MP -MF .deps/swap.Tpo -c -o swap.o swap.cc
mv -f .deps/setflags.Tpo .deps/setflags.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT timesys.o -MD -MP -MF .deps/timesys.Tpo -c -o timesys.o timesys.cc
mv -f .deps/printEnergies.Tpo .deps/printEnergies.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT timesyshms.o -MD -MP -MF .deps/timesyshms.Tpo -c -o timesyshms.o timesyshms.cc
mv -f .deps/strindex.Tpo .deps/strindex.Po
mv -f .deps/stack.Tpo .deps/stack.Po
mv -f .deps/swap.Tpo .deps/swap.Po
mv -f .deps/timesys.Tpo .deps/timesys.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT torNorVec.o -MD -MP -MF .deps/torNorVec.Tpo -c -o torNorVec.o torNorVec.cc
mv -f .deps/qmultiply.Tpo .deps/qmultiply.Po
mv -f .deps/success.Tpo .deps/success.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT torsion.o -MD -MP -MF .deps/torsion.Tpo -c -o torsion.o torsion.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT trilinterp.o -MD -MP -MF .deps/trilinterp.Tpo -c -o trilinterp.o trilinterp.cc
mv -f .deps/writePDBQT.Tpo .deps/writePDBQT.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT usage.o -MD -MP -MF .deps/usage.Tpo -c -o usage.o usage.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT weedbonds.o -MD -MP -MF .deps/weedbonds.Tpo -c -o weedbonds.o weedbonds.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT warn_bad_file.o -MD -MP -MF .deps/warn_bad_file.Tpo -c -o warn_bad_file.o warn_bad_file.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT coliny.o -MD -MP -MF .deps/coliny.Tpo -c -o coliny.o coliny.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT eintcal.o -MD -MP -MF .deps/eintcal.Tpo -c -o eintcal.o eintcal.cc
mv -f .deps/coliny.Tpo .deps/coliny.Po
mv -f .deps/torNorVec.Tpo .deps/torNorVec.Po
mv -f .deps/usage.Tpo .deps/usage.Po
mv -f .deps/timesyshms.Tpo .deps/timesyshms.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT eintcalPrint.o -MD -MP -MF .deps/eintcalPrint.Tpo -c -o eintcalPrint.o eintcalPrint.cc
mv -f .deps/warn_bad_file.Tpo .deps/warn_bad_file.Po
weedbonds.cc: In function ‘void weedbonds(int, char (*)[5], int*, int, int (*)[2048], int (*)[2048], int*, NonbondParam*, int, int*)’:
weedbonds.cc:181:120: warning: suggest parentheses around ‘&&’ within ‘||’
weedbonds.cc:198:120: warning: suggest parentheses around ‘&&’ within ‘||’
weedbonds.cc:215:120: warning: suggest parentheses around ‘&&’ within ‘||’
mv -f .deps/eintcal.Tpo .deps/eintcal.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT intnbtable.o -MD -MP -MF .deps/intnbtable.Tpo -c -o intnbtable.o intnbtable.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT nbe.o -MD -MP -MF .deps/nbe.Tpo -c -o nbe.o nbe.cc
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autodock\" -DPACKAGE_TARNAME=\"autodock\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autodock\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autodock\" -DVERSION=\"4.2.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_STRNCASECMP=1 -I.  -DNOSQRT -DUSE_8A_NBCUTOFF -DWRITEPDBQSTATE -I./../acro/include   -O3 -Wall -Wno-write-strings  -O2 -pipe -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cc
mv -f .deps/stop.Tpo .deps/stop.Po
mv -f .deps/torsion.Tpo .deps/torsion.Po
mv -f .deps/trilinterp.Tpo .deps/trilinterp.Po
mv -f .deps/intnbtable.Tpo .deps/intnbtable.Po
mv -f .deps/eintcalPrint.Tpo .deps/eintcalPrint.Po
mv -f .deps/nbe.Tpo .deps/nbe.Po
mv -f .deps/rep.Tpo .deps/rep.Po
mv -f .deps/weedbonds.Tpo .deps/weedbonds.Po
mv -f .deps/simanneal.Tpo .deps/simanneal.Po
mv -f .deps/ranlib.Tpo .deps/ranlib.Po
mv -f .deps/support.Tpo .deps/support.Po
rm -f libad.a
ar cru libad.a alea.o analysis.o atom_parameter_manager.o banner.o bestpdb.o calculateEnergies.o call_cpso.o call_glss.o call_gs.o call_ls.o changeState.o check_header_float.o check_header_int.o check_header_line.o cluster_analysis.o clmode.o cnv_state_to_coords.o com.o conformation_sampler.o dimLibrary.o distdepdiel.o stateLibrary.o readfield.o readmap.o readPDBQT.o read_parameter_library.o eval.o gencau.o getrms.o get_atom_type.o getInitialState.o getpdbcrds.o gs.o initautodock.o input_state.o investigate.o linpack.o ls.o mapping.o minmeanmax.o mkNewState.o mkTorTree.o mkRandomState.o nonbonds.o openfile.o output_state.o parse_dpf_line.o parse_param_line.o parse_PDBQT_line.o parse_trj_line.o parsetypes.o print_2x.o print_atomic_energies.o print_avsfld.o writePDBQT.o print_rem.o printdate.o printEnergies.o printhms.o prClusterHist.o prInitialState.o prTorConList.o qmultiply.o qtransform.o quicksort.o ranlib.o rep.o scauchy.o setflags.o simanneal.o sort_enrg.o stack.o stop.o strindex.o success.o support.o swap.o timesys.o timesyshms.o torNorVec.o torsion.o trilinterp.o usage.o weedbonds.o warn_bad_file.o coliny.o eintcal.o eintcalPrint.o intnbtable.o nbe.o 
i686-pc-linux-gnu-ranlib libad.a
mv -f .deps/main.Tpo .deps/main.Po
i686-pc-linux-gnu-g++ -O3 -Wall -Wno-write-strings  -O2 -pipe  -Wl,-O1 -o autodock4 main.o libad.a  -lm 
make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock'
make: Leaving directory `/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autodock'
make -j14 -C autogrid 
make: Entering directory `/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autogrid'
rm -f default_parameters.h
csh ./../autodock/paramdat2h.csh ./../autodock/AD4_parameters.dat  ./../autodock/AD4.1_bound.dat > default_parameters.h
make  all-am
make[1]: Entering directory `/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autogrid'
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-main.o -MD -MP -MF .deps/autogrid4-main.Tpo -c -o autogrid4-main.o `test -f 'main.cpp' || echo './'`main.cpp
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-check_size.o -MD -MP -MF .deps/autogrid4-check_size.Tpo -c -o autogrid4-check_size.o `test -f 'check_size.cpp' || echo './'`check_size.cpp
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-setflags.o -MD -MP -MF .deps/autogrid4-setflags.Tpo -c -o autogrid4-setflags.o `test -f 'setflags.cpp' || echo './'`setflags.cpp
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-timesys.o -MD -MP -MF .deps/autogrid4-timesys.Tpo -c -o autogrid4-timesys.o `test -f 'timesys.cpp' || echo './'`timesys.cpp
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-timesyshms.o -MD -MP -MF .deps/autogrid4-timesyshms.Tpo -c -o autogrid4-timesyshms.o `test -f 'timesyshms.cpp' || echo './'`timesyshms.cpp
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-printhms.o -MD -MP -MF .deps/autogrid4-printhms.Tpo -c -o autogrid4-printhms.o `test -f 'printhms.cpp' || echo './'`printhms.cpp
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-prHMSfixed.o -MD -MP -MF .deps/autogrid4-prHMSfixed.Tpo -c -o autogrid4-prHMSfixed.o `test -f 'prHMSfixed.cpp' || echo './'`prHMSfixed.cpp
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-printdate.o -MD -MP -MF .deps/autogrid4-printdate.Tpo -c -o autogrid4-printdate.o `test -f 'printdate.cpp' || echo './'`printdate.cpp
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-strindex.o -MD -MP -MF .deps/autogrid4-strindex.Tpo -c -o autogrid4-strindex.o `test -f 'strindex.cpp' || echo './'`strindex.cpp
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-banner.o -MD -MP -MF .deps/autogrid4-banner.Tpo -c -o autogrid4-banner.o `test -f 'banner.cpp' || echo './'`banner.cpp
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-gpfparser.o -MD -MP -MF .deps/autogrid4-gpfparser.Tpo -c -o autogrid4-gpfparser.o `test -f 'gpfparser.cpp' || echo './'`gpfparser.cpp
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-parsetypes.o -MD -MP -MF .deps/autogrid4-parsetypes.Tpo -c -o autogrid4-parsetypes.o `test -f 'parsetypes.cpp' || echo './'`parsetypes.cpp
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-atom_parameter_manager.o -MD -MP -MF .deps/autogrid4-atom_parameter_manager.Tpo -c -o autogrid4-atom_parameter_manager.o `test -f 'atom_parameter_manager.cpp' || echo './'`atom_parameter_manager.cpp
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-read_parameter_library.o -MD -MP -MF .deps/autogrid4-read_parameter_library.Tpo -c -o autogrid4-read_parameter_library.o `test -f 'read_parameter_library.cpp' || echo './'`read_parameter_library.cpp
mv -f .deps/autogrid4-printhms.Tpo .deps/autogrid4-printhms.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-parse_param_line.o -MD -MP -MF .deps/autogrid4-parse_param_line.Tpo -c -o autogrid4-parse_param_line.o `test -f 'parse_param_line.cpp' || echo './'`parse_param_line.cpp
mv -f .deps/autogrid4-timesys.Tpo .deps/autogrid4-timesys.Po
mv -f .deps/autogrid4-prHMSfixed.Tpo .deps/autogrid4-prHMSfixed.Po
mv -f .deps/autogrid4-setflags.Tpo .deps/autogrid4-setflags.Po
mv -f .deps/autogrid4-printdate.Tpo .deps/autogrid4-printdate.Po
mv -f .deps/autogrid4-strindex.Tpo .deps/autogrid4-strindex.Po
mv -f .deps/autogrid4-banner.Tpo .deps/autogrid4-banner.Po
mv -f .deps/autogrid4-timesyshms.Tpo .deps/autogrid4-timesyshms.Po
i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"autogrid\" -DPACKAGE_TARNAME=\"autogrid\" -DPACKAGE_VERSION=\"4.2.3\" -DPACKAGE_STRING=\"autogrid\ 4.2.3\" -DPACKAGE_BUGREPORT=\"[e-mail]\" -DPACKAGE_URL=\"\" -DPACKAGE=\"autogrid\" -DVERSION=\"4.2.3\" -DHAVE_LIBM=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE__BOOL=1 -DHAVE_STDBOOL_H=1 -DHAVE_STDLIB_H=1 -DHAVE_MALLOC=1 -DHAVE_GETHOSTNAME=1 -DHAVE_POW=1 -DHAVE_ROUND=1 -DHAVE_SQRT=1 -DHAVE_STRNCASECMP=1 -I.  -Wall -O3 -I./../autodock -Wno-write-strings    -O2 -pipe -MT autogrid4-distdepdiel.o -MD -MP -MF .deps/autogrid4-distdepdiel.Tpo -c -o autogrid4-distdepdiel.o `test -f 'distdepdiel.cpp' || echo './'`distdepdiel.cpp
mv -f .deps/autogrid4-atom_parameter_manager.Tpo .deps/autogrid4-atom_parameter_manager.Po
mv -f .deps/autogrid4-gpfparser.Tpo .deps/autogrid4-gpfparser.Po
mv -f .deps/autogrid4-parsetypes.Tpo .deps/autogrid4-parsetypes.Po
mv -f .deps/autogrid4-distdepdiel.Tpo .deps/autogrid4-distdepdiel.Po
mv -f .deps/autogrid4-parse_param_line.Tpo .deps/autogrid4-parse_param_line.Po
mv -f .deps/autogrid4-read_parameter_library.Tpo .deps/autogrid4-read_parameter_library.Po
mv -f .deps/autogrid4-check_size.Tpo .deps/autogrid4-check_size.Po
mv -f .deps/autogrid4-main.Tpo .deps/autogrid4-main.Po
i686-pc-linux-gnu-g++  -O2 -pipe  -Wl,-O1 -o autogrid4 autogrid4-main.o autogrid4-check_size.o autogrid4-setflags.o autogrid4-timesys.o autogrid4-timesyshms.o autogrid4-printhms.o autogrid4-prHMSfixed.o autogrid4-printdate.o autogrid4-strindex.o autogrid4-banner.o autogrid4-gpfparser.o autogrid4-parsetypes.o autogrid4-atom_parameter_manager.o autogrid4-read_parameter_library.o autogrid4-parse_param_line.o autogrid4-distdepdiel.o  -lm 
make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autogrid'
make: Leaving directory `/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src/autogrid'
>>> Source compiled.
in 1pgp_no_extension
in 1pgp_wrong_extension
in 1pgp_two_extensions

Running ../autodock4 using DPF "./1pgp_no_extension", saving results in "./test_1pgp_no_extension.dlg":

 AutoDock needs the extension of the docking parameter file to be ".dpf"
../autodock4: Unsuccessful Completion.

Testing that DLG exists and AutoDock did not complete.
.
Running ../autodock4 using DPF "./1pgp.fpd", saving results in "./test_1pgp.fpd.dlg":

 AutoDock needs the extension of the docking parameter file to be ".dpf"
../autodock4: Unsuccessful Completion.

Testing that DLG exists and AutoDock did not complete.
.
Running ../autodock4 using DPF "./1pgp.dpf.dpf", saving results in "./test_1pgp.dpf.dlg":

 AutoDock needs the extension of the docking parameter file to be ".dpf"
../autodock4: Unsuccessful Completion.

Testing that DLG exists and AutoDock did not complete.
.
Running ../autodock4 using DPF "./1pgp_ligand_types_map_mismatch.dpf", saving results in "./test_1pgp_ligand_types_map_mismatch.dlg":
Sorry, I can't find or open AD4.1_bound.dat
Testing that DLG exists and AutoDock did not complete.
.
Running ../autodock4 using DPF "./1pgp_illegal_keyword.dpf", saving results in "./test_1pgp_illegal_keyword.dlg":
Sorry, I can't find or open AD4.1_bound.dat
Testing that DLG exists and AutoDock did not complete.
.
Running ../autodock4 using DPF "./1pgp_no_elecmap.dpf", saving results in "./test_1pgp_no_elecmap.dlg":
Sorry, I can't find or open AD4.1_bound.dat
Testing that DLG exists and AutoDock did not complete.
.
Running ../autodock4 using DPF "./1pgp_no_desolvmap.dpf", saving results in "./test_1pgp_no_desolvmap.dlg":
Sorry, I can't find or open AD4.1_bound.dat
Testing that DLG exists and AutoDock did not complete.
.
Running ../autodock4 using DPF "./1pgp_no_elec_desolv_maps.dpf", saving results in "./test_1pgp_no_elec_desolv_maps.dlg":
Sorry, I can't find or open AD4.1_bound.dat
Testing that DLG exists and AutoDock did not complete.
.
Running ../autodock4 using DPF "./1pgp_too_many_ligand_types.dpf", saving results in "./test_1pgp_too_many_ligand_types.dlg":
Sorry, I can't find or open AD4.1_bound.dat
Testing that DLG exists and AutoDock did not complete.
.
Running ../autodock4 using DPF "./1pgp_too_many_torsions.dpf", saving results in "./test_1pgp_too_many_torsions.dlg":
Sorry, I can't find or open AD4.1_bound.dat
Testing that DLG exists and AutoDock did not complete.
.
Running ../autodock4 using DPF "./1pgp_just_right_number_torsions.dpf", saving results in "./test_1pgp_just_right_number_torsions.dlg":
Sorry, I can't find or open AD4.1_bound.dat
Testing that DLG exists and AutoDock successfully completed.
F
Running ../autodock4 using DPF "./1pgp_two_ligands.dpf", saving results in "./test_1pgp_two_ligands.dlg":
Sorry, I can't find or open AD4.1_bound.dat
Testing that DLG exists and AutoDock successfully completed.
F
Running ../autodock4 using DPF "./1pgp_two_mapsets.dpf", saving results in "./test_1pgp_two_mapsets.dlg":
Sorry, I can't find or open AD4.1_bound.dat
Testing that DLG exists and AutoDock successfully completed.
F
Running ../autodock4 using DPF "./1pgp_unbound_set_illegal.dpf", saving results in "./test_1pgp_unbound_set_illegal.dlg":
../autodock4: ERROR: 
../autodock4: Aborting...

../autodock4: Unsuccessful Completion.

Testing that DLG exists and AutoDock did not complete.
.
Running ../autodock4 using DPF "./1pgp_unbound_model_illegal.dpf", saving results in "./test_1pgp_unbound_model_illegal.dlg":
../autodock4: ERROR: 
../autodock4: Aborting...

../autodock4: Unsuccessful Completion.

Testing that DLG exists and AutoDock did not complete.
.
Running ../autodock4 using DPF "./1pgp_ga_select_tournament.dpf", saving results in "./test_1pgp_ga_select_tournament.dlg":
Sorry, I can't find or open AD4.1_bound.dat
Testing that DLG exists and AutoDock successfully completed.
F
Running ../autodock4 using DPF "./1pgp.dpf", saving results in "./test_1pgp.dlg":
Sorry, I can't find or open AD4.1_bound.dat
Testing that DLG exists and AutoDock successfully completed.
F
Running ../autodock4 using DPF "./1pgp_smaller.dpf", saving results in "./test_1pgp_smaller.dlg":
Sorry, I can't find or open AD4.1_bound.dat
Testing that DLG exists and AutoDock successfully completed.
F
Running ../autodock4 using DPF "./1pgp_no_parameter_file.dpf", saving results in "./test_1pgp_no_parameter_file.dlg":

________________________________________________________________________________

../autodock4: Successful Completion on "tinderbox"

________________________________________________________________________________

Testing that DLG exists and AutoDock successfully completed.
intermol_energy  is now  -6.17
total_internal  is now  -1.8
Testing that intermolecular energy = -6.17 kcal/mol.
Testing that internal energy = -1.80 kcal/mol.
.
Running ../autodock4 using DPF "./1pgp_unbound_default.dpf", saving results in "./test_1pgp_unbound_default.dlg":

________________________________________________________________________________

../autodock4: Successful Completion on "tinderbox"

________________________________________________________________________________

Testing that DLG exists and AutoDock successfully completed.
unbound_energy  is now  -1.8
Testing that unbound energy = -1.80 kcal/mol.
unbound_energy= -1.8
.
Running ../autodock4 using DPF "./1pgp_unbound_set0.dpf", saving results in "./test_1pgp_unbound_set0.dlg":

________________________________________________________________________________

../autodock4: Successful Completion on "tinderbox"

________________________________________________________________________________

Testing that DLG exists and AutoDock successfully completed.
unbound_energy  is now  0.0
Testing that unbound energy = 0.00 kcal/mol.
unbound_energy= 0.0
.
Running ../autodock4 using DPF "./1pgp_unbound_set10.dpf", saving results in "./test_1pgp_unbound_set10.dlg":

________________________________________________________________________________

../autodock4: Successful Completion on "tinderbox"

________________________________________________________________________________

Testing that DLG exists and AutoDock successfully completed.
unbound_energy  is now  10.0
Testing that unbound energy = 10.00 kcal/mol.
unbound_energy= 10.0
.
Running ../autodock4 using DPF "./1pgp_unbound_model_compact.dpf", saving results in "./test_1pgp_unbound_model_compact.dlg":

________________________________________________________________________________

../autodock4: Successful Completion on "tinderbox"

________________________________________________________________________________

Testing that DLG exists and AutoDock successfully completed.
unbound_energy  is now  0.0
Testing that unbound energy = 0.00 kcal/mol.
unbound_energy= 0.0
.
Running ../autodock4 using DPF "./1pgp_unbound_model_bound.dpf", saving results in "./test_1pgp_unbound_model_bound.dlg":

________________________________________________________________________________

../autodock4: Successful Completion on "tinderbox"

________________________________________________________________________________

Testing that DLG exists and AutoDock successfully completed.
unbound_energy  is now  -1.8
Testing that unbound energy = -1.80 kcal/mol.
unbound_energy= -1.8
.
Running ../autodock4 using DPF "./1pgp_unbound_model_extended.dpf", saving results in "./test_1pgp_unbound_model_extended.dlg":
../autodock4: WARNING: Using autodock4.0 unbound extended model in autodock4.2!

________________________________________________________________________________

../autodock4: Successful Completion on "tinderbox"

________________________________________________________________________________

Testing that DLG exists and AutoDock successfully completed.
unbound_energy  is now  -0.28
Testing that unbound energy = -0.28 kcal/mol.
unbound_energy= -0.28
.
Running ../autodock4 using DPF "./1pgp_unbound_compute_unbound_extended.dpf", saving results in "./test_1pgp_unbound_compute_unbound_extended.dlg":
../autodock4: WARNING: Using autodock4.0 unbound extended model in autodock4.2!

________________________________________________________________________________

../autodock4: Successful Completion on "tinderbox"

________________________________________________________________________________

Testing that DLG exists and AutoDock successfully completed.
unbound_energy  is now  -0.28
Testing that unbound energy = -0.28 kcal/mol.
unbound_energy= -0.28
.
Running ../autodock4 using DPF "./1pgp_unbound_model_value.dpf", saving results in "./test_1pgp_unbound_model_value.dlg":

________________________________________________________________________________

../autodock4: Successful Completion on "tinderbox"

________________________________________________________________________________

Testing that DLG exists and AutoDock successfully completed.
unbound_energy  is now  -3.12
Testing that unbound energy = -3.12 kcal/mol.
unbound_energy= -3.12
.
======================================================================
FAIL: Check that run finished and a new DLG has been computed.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test_autodock4.py", line 168, in test_dlg_exists
    self.assertEqual( self.computed, self.expected_outcome )
AssertionError: False != True

======================================================================
FAIL: Check that run finished and a new DLG has been computed.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test_autodock4.py", line 168, in test_dlg_exists
    self.assertEqual( self.computed, self.expected_outcome )
AssertionError: False != True

======================================================================
FAIL: Check that run finished and a new DLG has been computed.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test_autodock4.py", line 168, in test_dlg_exists
    self.assertEqual( self.computed, self.expected_outcome )
AssertionError: False != True

======================================================================
FAIL: Check that run finished and a new DLG has been computed.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test_autodock4.py", line 168, in test_dlg_exists
    self.assertEqual( self.computed, self.expected_outcome )
AssertionError: False != True

======================================================================
FAIL: Check that run finished and a new DLG has been computed.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test_autodock4.py", line 311, in test_dlg_exists_and_test_energy
    self.assertEqual( self.computed, self.expected_outcome )
AssertionError: False != True

======================================================================
FAIL: Check that run finished and a new DLG has been computed.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "test_autodock4.py", line 311, in test_dlg_exists_and_test_energy
    self.assertEqual( self.computed, self.expected_outcome )
AssertionError: False != True

----------------------------------------------------------------------
Ran 27 tests in 6.650s

FAILED (failures=6)
 * ERROR: sci-chemistry/autodock-4.2.3 failed:
 *   AutoDock tests failed.
 * 
 * Call stack:
 *     ebuild.sh, line  54:  Called src_test
 *   environment, line 2984:  Called die
 * The specific snippet of code:
 *       python test_autodock4.py || die "AutoDock tests failed.";
 * 
 * If you need support, post the output of 'emerge --info =sci-chemistry/autodock-4.2.3',
 * the complete build log and the output of 'emerge -pqv =sci-chemistry/autodock-4.2.3'.
 * The complete build log is located at '/var/log/portage/build/sci-chemistry/autodock-4.2.3:20100518-000730.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/autodock-4.2.3/temp/environment'.
 * S: '/var/tmp/portage/sci-chemistry/autodock-4.2.3/work/src'

>>> Install autodock-4.2.3 into /var/tmp/portage/sci-chemistry/autodock-4.2.3/image/ category sci-chemistry
>>> Completed installing autodock-4.2.3 into /var/tmp/portage/sci-chemistry/autodock-4.2.3/image/

strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/bin/autogrid4
   usr/bin/autodock4
 * The AutoDock development team requests all users to fill out the
 * registration form at:
 * 
 * 	http://autodock.scripps.edu/downloads/autodock-registration
 * 
 * The number of unique users of AutoDock is used by Prof. Arthur J.
 * Olson and the Scripps Research Institude to support grant
 * applications.
error(7) trying to perform operation
operation failed