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Gentoo's Bugzilla – Attachment 223265 Details for
Bug 309127
sci-biology/vaal-1.2-r1: Failed to resolve boost library name
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build.log
build.log (text/plain), 8.85 KB, created by
Martin Mokrejš
on 2010-03-12 12:15:45 UTC
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Description:
build.log
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MIME Type:
Creator:
Martin Mokrejš
Created:
2010-03-12 12:15:45 UTC
Size:
8.85 KB
patch
obsolete
> [32;01m*[0m CPV: sci-biology/vaal-1.2-r1 > [32;01m*[0m REPO: gentoo > [32;01m*[0m USE: amd64 elibc_glibc kernel_linux multilib userland_GNU >>>> Unpacking source... >>>> Unpacking VAAL.1.2.tgz to /var/tmp/portage/sci-biology/vaal-1.2-r1/work >>>> Unpacking VAAL_manual.doc to /var/tmp/portage/sci-biology/vaal-1.2-r1/work >unpack VAAL_manual.doc: file format not recognized. Ignoring. >>>> Source unpacked in /var/tmp/portage/sci-biology/vaal-1.2-r1/work >>>> Preparing source in /var/tmp/portage/sci-biology/vaal-1.2-r1/work/VAAL ... > [32;01m*[0m Applying vaal-1.2-gcc-x86-no-autocast.patch ... >[A[104C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying vaal-1.2-as-needed.patch ... >[A[104C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying vaal-1.2-respect-flags.patch ... >[A[104C [34;01m[ [32;01mok[34;01m ][0m >>>> Source prepared. >>>> Configuring source in /var/tmp/portage/sci-biology/vaal-1.2-r1/work/VAAL ... >./configure --prefix=/usr --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --libdir=/usr/lib64 >checking for gawk... gawk >checking for a sed that does not truncate output... /bin/sed >checking for bison... bison -y >checking for x86_64-pc-linux-gnu-g++... x86_64-pc-linux-gnu-g++ >checking for C++ compiler default output file name... a.out >checking whether the C++ compiler works... yes >checking whether we are cross compiling... no >checking for suffix of executables... >checking for suffix of object files... o >checking whether we are using the GNU C++ compiler... yes >checking whether x86_64-pc-linux-gnu-g++ accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc... x86_64-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... yes >checking whether x86_64-pc-linux-gnu-gcc accepts -g... yes >checking for x86_64-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking for flex... flex >checking lex output file root... lex.yy >checking lex library... -lfl >checking whether yytext is a pointer... yes >checking whether ln -s works... yes >checking whether make sets $(MAKE)... yes >checking to see if we need to include the Boost libraries... yes >checking to see if we need to include the Xerces libraries... no >checking to see if we need to include the GMP libraries... no >checking for dirent.h that defines DIR... yes >checking for library containing opendir... none required >checking how to run the C preprocessor... x86_64-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for sys/wait.h that is POSIX.1 compatible... yes >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking fcntl.h usability... yes >checking fcntl.h presence... yes >checking for fcntl.h... yes >checking float.h usability... yes >checking float.h presence... yes >checking for float.h... yes >checking limits.h usability... yes >checking limits.h presence... yes >checking for limits.h... yes >checking locale.h usability... yes >checking locale.h presence... yes >checking for locale.h... yes >checking for memory.h... (cached) yes >checking netinet/in.h usability... yes >checking netinet/in.h presence... yes >checking for netinet/in.h... yes >checking stddef.h usability... yes >checking stddef.h presence... yes >checking for stddef.h... yes >checking for stdlib.h... (cached) yes >checking for string.h... (cached) yes >checking for strings.h... (cached) yes >checking sys/file.h usability... yes >checking sys/file.h presence... yes >checking for sys/file.h... yes >checking sys/param.h usability... yes >checking sys/param.h presence... yes >checking for sys/param.h... yes >checking sys/time.h usability... yes >checking sys/time.h presence... yes >checking for sys/time.h... yes >checking for unistd.h... (cached) yes >checking wchar.h usability... yes >checking wchar.h presence... yes >checking for wchar.h... yes >configure: VENDOR wasn't set, setting to a default >checking for getline in -lm... yes >checking for stdbool.h that conforms to C99... yes >checking for _Bool... yes >checking for an ANSI C-conforming const... yes >checking for inline... inline >checking for mode_t... yes >checking for off_t... yes >checking for pid_t... yes >checking for C/C++ restrict keyword... __restrict >checking for size_t... yes >checking for ssize_t... yes >checking whether time.h and sys/time.h may both be included... yes >checking whether struct tm is in sys/time.h or time.h... time.h >checking for uint16_t... yes >checking for uint32_t... yes >checking for uint64_t... yes >checking for uint8_t... yes >checking for working volatile... yes >checking for ptrdiff_t... yes >checking for ulong... yes >checking whether closedir returns void... no >checking for error_at_line... yes >checking vfork.h usability... no >checking vfork.h presence... no >checking for vfork.h... no >checking for fork... yes >checking for vfork... yes >checking for working fork... yes >checking for working vfork... (cached) yes >checking whether x86_64-pc-linux-gnu-gcc needs -traditional... no >checking whether lstat dereferences a symlink specified with a trailing slash... yes >checking whether lstat accepts an empty string... no >checking whether lstat dereferences a symlink specified with a trailing slash... (cached) yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible malloc... yes >checking for working memcmp... yes >checking for stdlib.h... (cached) yes >checking for unistd.h... (cached) yes >checking for getpagesize... yes >checking for working mmap... yes >checking for stdlib.h... (cached) yes >checking for GNU libc compatible realloc... yes >checking sys/select.h usability... yes >checking sys/select.h presence... yes >checking for sys/select.h... yes >checking sys/socket.h usability... yes >checking sys/socket.h presence... yes >checking for sys/socket.h... yes >checking types of arguments for select... int,fd_set *,struct timeval * >checking return type of signal handlers... void >checking whether stat accepts an empty string... no >checking for strftime... yes >checking for alarm... yes >checking for atexit... yes >checking for bzero... yes >checking for dup2... yes >checking for floor... no >checking for ftruncate... yes >checking for getcwd... yes >checking for gethostname... yes >checking for getpagesize... (cached) yes >checking for gettimeofday... yes >checking for memchr... yes >checking for memmove... yes >checking for memset... yes >checking for mkdir... yes >checking for mkfifo... yes >checking for munmap... yes >checking for pow... no >checking for putenv... yes >checking for realpath... yes >checking for regcomp... yes >checking for rint... no >checking for rmdir... yes >checking for select... yes >checking for setenv... yes >checking for setlocale... yes >checking for sqrt... no >checking for strcasecmp... yes >checking for strchr... yes >checking for strdup... yes >checking for strerror... yes >checking for strncasecmp... yes >checking for strrchr... yes >checking for strstr... yes >checking for strtol... yes >checking for strtoul... yes >checking for uname... yes >checking to see that gcc is at least version 4.3.2... Yes, gcc version 4.4.3 is fine >checking for boostlib >= 1.37.0... yes >found boost version >checking for boost library name... Failed... >configure: Configure failed with the error message: Failed to resolve boost library name >configure: >configure: Common error conditions in the build process are documented on our wiki page, >configure: http://www.broad.mit.edu/crd/wiki/index.php/Build_FAQ >configure: We also offer email support at crdhelp@broad.mit.edu >configure: error: in `/var/tmp/portage/sci-biology/vaal-1.2-r1/work/VAAL': >configure: error: configure failed. >See `config.log' for more details. > >!!! Please attach the following file when seeking support: >!!! /var/tmp/portage/sci-biology/vaal-1.2-r1/work/VAAL/config.log > [31;01m*[0m ERROR: sci-biology/vaal-1.2-r1 failed: > [31;01m*[0m econf failed > [31;01m*[0m > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 54: Called src_configure > [31;01m*[0m environment, line 2436: Called base_src_configure > [31;01m*[0m environment, line 239: Called econf > [31;01m*[0m ebuild.sh, line 544: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m die "econf failed" > [31;01m*[0m > [31;01m*[0m If you need support, post the output of 'emerge --info =sci-biology/vaal-1.2-r1', > [31;01m*[0m the complete build log and the output of 'emerge -pqv =sci-biology/vaal-1.2-r1'. > [31;01m*[0m The complete build log is located at '/var/tmp/portage/sci-biology/vaal-1.2-r1/temp/build.log'. > [31;01m*[0m The ebuild environment file is located at '/var/tmp/portage/sci-biology/vaal-1.2-r1/temp/environment'. > [31;01m*[0m S: '/var/tmp/portage/sci-biology/vaal-1.2-r1/work/VAAL'
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Attachments on
bug 309127
: 223265 |
223267
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248187