Build log

molrep-10.2.35:20100214-162757.log (text/plain), 3.96 KB, created by Diego Elio Pettenò (RETIRED) on 2010-02-14 20:29:54 UTC

 * CPV:  sci-chemistry/molrep-10.2.35
 * REPO: gentoo
 * USE:  elibc_glibc kernel_linux test userland_GNU x86
>>> Unpacking source...
>>> Unpacking molrep-10.2.35.tar.gz to /var/tmp/portage/sci-chemistry/molrep-10.2.35/work
>>> Unpacking test-framework.tar.gz to /var/tmp/portage/sci-chemistry/molrep-10.2.35/work
>>> Source unpacked in /var/tmp/portage/sci-chemistry/molrep-10.2.35/work
>>> Preparing source in /var/tmp/portage/sci-chemistry/molrep-10.2.35/work/molrep ...
 * Applying 10.2.35-respect-FLAGS.patch ...
  [ ok ]
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-chemistry/molrep-10.2.35/work/molrep ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-chemistry/molrep-10.2.35/work/molrep ...
make -j14 clean 
rm -f `cd ..;pwd`/bin/*
rm -f ./*.o
rm -f ./*~ ./#*
make -j14 MR_FORT=i686-pc-linux-gnu-gfortran FFLAGS= LDFLAGS=-Wl,-O1 'MR_LIBRARY=-L/usr/lib -lccp4f -lccp4c -lmmdb -lccif -llapack -lstdc++ -lm' 
i686-pc-linux-gnu-gfortran  -c main_molrep_mtz.f 
i686-pc-linux-gnu-gfortran  -c molrep.f
i686-pc-linux-gnu-gfortran  -c molrep1.f
i686-pc-linux-gnu-gfortran  -c molrep2.f
i686-pc-linux-gnu-gfortran  -c molrep3.f
i686-pc-linux-gnu-gfortran  -c molrep_prog.f
i686-pc-linux-gnu-gfortran  -c molrep_prog1.f
i686-pc-linux-gnu-gfortran  -c molrep_prog2.f
i686-pc-linux-gnu-gfortran  -c molrep_subr.f
i686-pc-linux-gnu-gfortran  -c molrep_dummy.f 
i686-pc-linux-gnu-gfortran  -c molrep_sym_ccp4.f 
i686-pc-linux-gnu-gfortran  -c molrep_unix_ccp4.f 
i686-pc-linux-gnu-gfortran  -Wl,-O1 -o `cd ..;pwd`/bin/molrep main_molrep_mtz.o molrep.o molrep1.o molrep2.o molrep3.o molrep_prog.o molrep_prog1.o molrep_prog2.o molrep_subr.o molrep_sym_ccp4.o molrep_unix_ccp4.o -L/usr/lib -lccp4f -lccp4c -lmmdb -lccif -llapack -lstdc++ -lm
>>> Source compiled.
 * Starting tests ...
[MOLREP] MR, hexagonal / monoclinic myoglobin. ... FAIL
[MOLREP] selfRF for hexagonal myoglobin data. ... FAIL

======================================================================
FAIL: [MOLREP] MR, hexagonal / monoclinic myoglobin.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/sci-chemistry/molrep-10.2.35/work/test-framework/molrep/test_molrep.py", line 77, in test_molecular_replacement
    self.assertEqual(status, 0)
AssertionError: 1 != 0

======================================================================
FAIL: [MOLREP] selfRF for hexagonal myoglobin data.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/sci-chemistry/molrep-10.2.35/work/test-framework/molrep/test_molrep.py", line 102, in test_self_RF
    self.assertEqual(status, 0)
AssertionError: 1 != 0

----------------------------------------------------------------------
Ran 2 tests in 0.135s

FAILED (failures=2)
 * ERROR: sci-chemistry/molrep-10.2.35 failed:
 *   nomal test failed
 * 
 * Call stack:
 *     ebuild.sh, line  54:  Called src_test
 *   environment, line 2561:  Called die
 * The specific snippet of code:
 *       ccp4-run-thorough-tests -v test_molrep || die "nomal test failed";
 * 
 * If you need support, post the output of 'emerge --info =sci-chemistry/molrep-10.2.35',
 * the complete build log and the output of 'emerge -pqv =sci-chemistry/molrep-10.2.35'.
 * The complete build log is located at '/var/log/portage/build/sci-chemistry/molrep-10.2.35:20100214-162757.log'.
 * The ebuild environment file is located at '/var/tmp/portage/sci-chemistry/molrep-10.2.35/temp/environment'.
 * S: '/var/tmp/portage/sci-chemistry/molrep-10.2.35/work/molrep'

>>> Install molrep-10.2.35 into /var/tmp/portage/sci-chemistry/molrep-10.2.35/image/ category sci-chemistry
>>> Completed installing molrep-10.2.35 into /var/tmp/portage/sci-chemistry/molrep-10.2.35/image/

strip: i686-pc-linux-gnu-strip --strip-unneeded -R .comment
   usr/bin/molrep
 * Removing /usr/share/doc
 * Removing /usr/share/info
Merge of sci-chemistry/molrep-10.2.35 at 2010-02-14T16:27:57+00:00
failed