build.log

build.log (text/plain), 142.04 KB, created by Martin Mokrejš on 2010-01-12 15:31:33 UTC

 [33;01m*[0m Filtering out invalid CFLAG "-glibc-omitfp"
 [33;01m*[0m Filtering out invalid CXXFLAG "-glibc-omitfp"
 [32;01m*[0m CPV:  sci-biology/ucsc-genome-browser-221
 [32;01m*[0m REPO: gentoo
 [32;01m*[0m USE:  amd64 elibc_glibc kernel_linux multilib mysql server userland_GNU
>>> Unpacking source...
>>> Unpacking jksrc.v221.zip to /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work
>>> Source unpacked in /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work
>>> Preparing source in /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent ...
>>> Source prepared.
>>> Configuring source in /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent ...
>>> Source configured.
>>> Compiling source in /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent ...
make -j5 -C src clean 
make: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src'
cd lib && make clean 
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/lib'
rm -f aliType.o apacheLog.o asParse.o axt.o axtAffine.o base64.o basicBed.o bbiRead.o bbiWrite.o bigBed.o binRange.o bits.o blastOut.o blastParse.o boxClump.o boxLump.o bPlusTree.o bwgCreate.o bwgQuery.o cda.o chain.o chainBlock.o chainConnect.o chainToAxt.o chainToPsl.o cheapcgi.o cirTree.o codebias.o colHash.o common.o correlate.o crTree.o dgRange.o diGraph.o dlist.o dnaLoad.o dnaMarkov.o dnaMotif.o dnaseq.o dnautil.o dtdParse.o dystring.o emblParse.o errCatch.o errabort.o fa.o ffAli.o ffScore.o filePath.o fixColor.o flydna.o fof.o fuzzyShow.o gapCalc.o gdf.o gemfont.o genomeRangeTree.o gfNet.o gff.o gff3.o gfxPoly.o gifLabel.o gifcomp.o gifdecomp.o gifread.o gifwrite.o hash.o histogram.o hmmPfamParse.o hmmstats.o htmlPage.o htmshell.o https.o intExp.o intValTree.o internet.o itsa.o jointalign.o jpegSize.o keys.o kxTok.o linefile.o localmem.o log.o maf.o mafFromAxt.o mafScore.o md5.o memalloc.o memgfx.o mgCircle.o mgHugeFont.o mgLargeFont.o mgMediumFont.o mgPolygon.o mgSmallFont.o mgTinyFont.o mime.o net.o nib.o nibTwo.o nt4.o numObscure.o obscure.o oldGff.o oligoTm.o options.o osunix.o pairHmm.o phyloTree.o pipeline.o portimpl.o pngwrite.o psGfx.o psPoly.o pscmGfx.o psl.o pslGenoShow.o pslShow.o pslTbl.o pslTransMap.o pthreadWrap.o qa.o quickHeap.o quotedP.o ra.o rbTree.o rangeTree.o repMask.o rle.o rnautil.o rqlEval.o rqlParse.o rudp.o scoreWindow.o seg.o seqOut.o seqStats.o servBrcMcw.o servCrunx.o servcis.o servcl.o servmsII.o servpws.o shaRes.o slog.o snof.o snofmake.o snofsig.o spaceSaver.o spacedColumn.o spacedSeed.o splatAli.o sqlList.o sqlNum.o subText.o sufa.o sufx.o synQueue.o tabRow.o textOut.o tokenizer.o trix.o twoBit.o udc.o vGfx.o vGif.o vPng.o verbose.o wildcmp.o wormdna.o xAli.o xa.o xap.o xenshow.o xmlEscape.o xp.o zlibFace.o x86_64/jkweb.a
cd tests && make clean
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/lib/tests'
rm -rf *.o bin output *.tmp mimeTester.tmp mimeTester.out
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/lib/tests'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/lib'
cd hg && make clean
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg'
cd lib && make clean
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/lib'
rm -f acemblyClass.o affyAllExonProbe.o affyAtlas.o affy10KDetails.o affy120KDetails.o affyOffset.o affyPairs.o agp.o agpFrag.o agpGap.o alignSeqSizes.o altGraph.o altGraphX.o ancientRref.o atomDb.o  axtInfo.o axtLib.o bactigPos.o bamFile.o baseMaskCommon.o bdgpExprLink.o bdgpGeneInfo.o bed.o bed5FloatScore.o bed5Pval.o bed6FloatScore.o bed12Source.o bed12wSeq.o bedCart.o bgiGeneInfo.o bgiGeneSnp.o bgiSnp.o bioImage.o blastTab.o blastzNet.o blatServers.o borf.o borkPseudoHom.o botDelay.o cart.o cartDb.o cdsEvidence.o cdsOrtho.o cdsPick.o cdsSpec.o ccdsInfo.o ccdsGeneMap.o celeraCoverage.o celeraDupPositive.o cgapSage/cgapSage.o cgapSage/cgapSageLib.o cgh.o chainCart.o chainDb.o chainLink.o chainNet.o chainNetDbLoad.o chicken13kInfo.o chromBins.o chr18deletions.o chromGraph.o chromGraphFactory.o chromInfo.o chromInserts.o chromKeeper.o clonePos.o codeBlast.o codeBlastScore.o cogs.o cogsxra.o columnInfo.o contigAcc.o coordConv.o cnpIafrate.o cnpIafrate2.o cnpLocke.o cnpRedon.o cnpSebat.o cnpSebat2.o cnpSharp2.o cnpSharpCutoff.o cnpSharpSample.o cnpSharp.o cpgIsland.o cpgIslandExt.o ctgPos.o ctgPos2.o customFactory.o customPp.o customTrack.o cutter.o cytoBand.o dbDb.o dbRIP.o dbSnpRs.o defaultDb.o delConrad2.o delHinds2.o dgv.o dless.o dnaMotifSql.o dnaProbe.o dv.o dvBed.o dvXref2.o easyGene.o ec.o ecCode.o ecAttribute.o ecAttributeCode.o encode/encodeErge.o encode/encodeErgeHssCellLines.o encode/encodeHapMapAlleleFreq.o encode/encodeIndels.o encode/encodePeak.o encode/encodeRegionInfo.o encode/encodeRegionInfoCustom.o encode/encodeRna.o encode/encodeStanfordPromoters.o encode/encodeStanfordPromotersAverage.o encode/pairedTagAlign.o encode/tagAlign.o ensFace.o ensInfo.o ensPhusionBlast.o ensXRefZfish.o est3.o estOrientInfo.o estPair.o exoFish.o expData.o expRecord.o exprBed.o fbTables.o featureBits.o findKGAlias.o findKGProtAlias.o fishClones.o flyBase2004Xref.o flyBaseSwissProt.o flyreg.o flyreg2.o gbExtFile.o gbWarn.o gbMiscDiff.o gbProtAnn.o gcPercent.o gbSeq.o genbank.o gencodeGeneClass.o gencodeIntron.o genMapDb.o geneBands.o geneCheck.o geneCheckDetails.o geneCheckWidget.o geneGraph.o genePred.o genePredReader.o geneSimilarities.o genoLay.o genomeRangeTreeFile.o genomicDups.o genomicSuperDups.o ggCluster.o ggDbIo.o ggDump.o ggGraph.o ggMrnaAli.o ggTypes.o glDbRep.o goa.o goaPart.o googleAnalytics.o growthCondition.o grp.o hapmapAllelesOrtho.o hapmapAllelesSummary.o hapmapPhaseIIISummary.o hapmapSnps.o hapmapSnpsCombined.o hCommon.o hCytoBand.o hdb.o hgColors.o hgConfig.o hgExp.o hgFind.o hgFindSpec.o hgFindSpecCustom.o hgGene.o hgMaf.o hgRelate.o hgSeq.o hgdpGeo.o hPrint.o hVarSubst.o hvGfx.o HInv.o hui.o humanParalog.o imageClone.o isochores.o ispyTables.o itemAttr.o itemConf.o jalview.o jaxOrtholog.o jaxQTL.o jaxQTL3.o jksql.o joiner.o jsHelper.o kg1ToKg2.o jgiGene.o kgAlias.o kgColor.o kgProtAlias.o kgXref.o knownInfo.o knownMore.o knownToSuper.o ld.o ld2.o lfs.o liftOver.o liftOverChain.o liftUp.o llaInfo.o lsSnpPdb.o lsSnpPdbChimera.o mafFrames.o mafGene.o mafSummary.o mammalPsg.o mapSts.o mcnBreakpoints.o metaChromGraph.o microarray.o minChromSize.o minGeneInfo.o mrnaMisMatch.o mouseOrtho.o mouseSyn.o mouseSynWhd.o mysqlTableStatus.o netAlign.o netCart.o nonCodingUi.o omimTitle.o ooUtils.o orthoAlleles.o pal.o pbStamp.o pcrResult.o pepPred.o plasEndPairs.o polyGenotype.o protFeat.o pscreen.o pseudoGeneLink.o pslReader.o pslWScore.o putaInfo.o qaSeq.o rangeTreeFile.o rankProp.o recombRate.o recombRateRat.o recombRateMouse.o refLink.o refSeqStatus.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o rgdQtl.o riken.o rhMapZfishInfo.o rikenBest.o rikenCluster.o rmskOut.o rnaFold.o rnaGene.o rnaGroup.o rnaHybridization.o rnaPLFold.o tRNAs.o gbRNAs.o snoRNAs.o lowelabPfamHit.o lowelabArkinOperonScore.o lowelabTIGROperonScore.o rnaSecStr.o tfbsConsFactors.o retroMrnaInfo.o roughAli.o transMapStuff.o transMapInfo.o transMapGene.o transMapSrc.o sage.o sageCounts.o sageExp.o sample.o sqlProg.o tfbsCons.o tfbsConsSites.o sanger22extra.o sangerGene.o sangerGeneToWBGeneID.o  sargassoSeaXra.o scopDes.o scoredRef.o sgdAbundance.o sgdClone.o sgdDescription.o sgdOther.o simpleNucDiff.o simpleRepeat.o snp.o snp125.o snp125CodingCoordless.o snpExceptions.o snpFasta.o snpMap.o snpTmp.o snpUi.o snp125Exceptions.o snp125Ui.o softPromoter.o softberryHom.o spDb.o splignAlign.o stanMad.o stsAlias.o stsInfo.o stsInfo2.o stsInfoMouse.o stsInfoMouseNew.o stsInfoRat.o stsMap.o stsMapMouse.o stsMapMouseNew.o stsMapRat.o stsMarker.o switchDbTss.o synMap.o synteny100000.o syntenyBerk.o syntenySanger.o tableDescriptions.o tableStatus.o targetDb.o tfbsConsMap.o taxonDivision.o taxonGeneticCode.o taxonName.o taxonNode.o taxonXref.o tigrCmrGene.o tigrOperon.o tilingPath.o traceInfo.o trackDb.o trackDbCustom.o trackLayout.o trackTable.o trackVersion.o trashDir.o transRegCode.o transRegCodeCondition.o transRegCodeProbe.o txCluster.o txCommon.o txEdgeBed.o txEdgeOrtho.o txGraph.o txInfo.o txRnaAccs.o validateGisaid.o vegaInfo.o vegaInfoZfish.o visiGene.o vntr.o wabAli.o web.o ncRna.o wgRna.o wigAsciiToBinary.o wigDataStream.o wiggle.o wiggleCart.o wiggleUtils.o wikiLink.o wikiTrack.o zdobnovSynt.o oreganno.o oregannoUi.o gvUi.o gv.o omicia.o protVar.o pgSnp.o alignInfo.o cddInfo.o loweutils.o cddDesc.o arCOGs.o arcogdesc.o megablastInfo.o;
rm -f ../../lib/x86_64/jkhgap.a;
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/lib'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/cartReset'
rm -f cartReset.o cartReset
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/cartReset'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/das'
rm -f das.o das
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/das'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgBlat'
rm -f hgBlat.o hgBlat
rm -f hgSs_*.fa hgSs_*.pslx
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgBlat'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/makeDb/hgCgiData'
make[2]: `clean' is up to date.
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/makeDb/hgCgiData'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgConvert'
rm -f hgConvert.o hgConvert
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgConvert'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgGateway'
rm -f hgGateway.o hgGateway
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgGateway'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgGene'
rm -f hgGene.o altSplice.o ctd.o dnaBindMotif.o domains.o gad.o flyBaseInfo.o go.o info.o links.o microarray.o method.o localization.o mrnaDescriptions.o otherOrgs.o pathways.o pseudoGene.o rnaStructure.o sequence.o swissProtComments.o synonym.o wikiTrack.o hgGene
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgGene'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgGenome'
rm -f browseRegions.o clickOnImage.o configure.o correlate.o hgGenome.o mainPage.o sortGenes.o upload.o usage.o custom.o wiggle.o maf.o bedList.o chromGraph.o import.o hgGenome
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgGenome'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgPcr'
rm -f hgPcr.o hgPcr
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgPcr'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgSession'
rm -f hgSession.o hgSession
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgSession'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgTables'
rm -f hgTables.o asObj.o bedList.o bigBed.o bigWig.o chromGraph.o compositeTrack.o custom.o filterFields.o gffOut.o identifiers.o intersect.o correlate.o correlatePlot.o joining.o maf.o mainPage.o microarrayTables.o rangeHistogram.o schema.o pal.o seqOut.o sumStats.o usage.o wiggle.o wikiTrack.o galaxy.o userRegions.o hgTables
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgTables'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgTracks'
rm -f hgTracks.o altGraphXTrack.o bamTrack.o bedGraph.o bedTrack.o bigBedTrack.o bigWigTrack.o chainTrack.o cgapSageTrack.o chromGraphTrack.o config.o contigTrack.o coverageTrack.o cytoBandTrack.o cutterTrack.o expRatioTracks.o factorSource.o goldTrack.o loweLabTracks.o mafTrack.o netTrack.o pslTrack.o rmskTrack.o sampleTracks.o simpleTracks.o switchGear.o transMapTracks.o wabaTrack.o wigTrack.o cds.o wigMafTrack.o encode.o variation.o transcriptome.o rnaFoldTrack.o retroGene.o hapmapTrack.o rnaPLFoldTrack.o wiki.o wikiTrack.o imageV2.o hgTracks
rm -f ct_hgwdev_*.bed hgtIdeo_*.gif hgt_*.gif
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgTracks'
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/hg/hgTrackUi'




[cut]




make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/utils/twoBitToFa'
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=nocona -fno-strict-aliasing -ggdb  -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa twoBitToFa.o ../../lib/x86_64/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/twoBitToFa
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/utils/twoBitToFa'
cd utils/twoBitInfo && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/utils/twoBitInfo'
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=nocona -fno-strict-aliasing -ggdb  -O -g  -Wall  -Wformat -Wimplicit -Wreturn-type -Wuninitialized -o /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo twoBitInfo.o ../../lib/x86_64/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/twoBitInfo
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/utils/twoBitInfo'
cd isPcr && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/isPcr'
cd gfPcr && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/isPcr/gfPcr'
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=nocona -fno-strict-aliasing -ggdb  -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/gfPcr gfPcr.o ../../lib/x86_64/jkOwnLib.a ../../lib/x86_64/jkweb.a  -lm 
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/isPcr/gfPcr'
cd isPcr && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/isPcr/isPcr'
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=nocona -fno-strict-aliasing -ggdb  -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/isPcr isPcr.o ../../lib/x86_64/jkOwnLib.a ../../lib/x86_64/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/isPcr
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/isPcr
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/isPcr/isPcr'
cd webPcr && make
make[2]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/isPcr/webPcr'
make[2]: `webPcr' is up to date.
make[2]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/isPcr/webPcr'
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/isPcr'
cd blatz && make
make[1]: Entering directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/blatz'
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=nocona -fno-strict-aliasing -ggdb  -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/blatz standalone.o align.o bzp.o gapless.o index.o output.o ../lib/x86_64/jkOwnLib.a ../lib/x86_64/jkweb.a  -lm 
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=nocona -fno-strict-aliasing -ggdb  -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/blatzClient client.o bzp.o ../lib/x86_64/jkOwnLib.a ../lib/x86_64/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/blatzClient
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/blatzClient
x86_64-pc-linux-gnu-gcc -O2 -pipe -march=nocona -fno-strict-aliasing -ggdb  -O -g -o /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/blatzServer server.o align.o bzp.o gapless.o index.o output.o ../lib/x86_64/jkOwnLib.a ../lib/x86_64/jkweb.a  -lm 
echo 'skipping strip'  /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/blatzServer
skipping strip /var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/destdir/opt/ucsc-genome-browser/bin/blatzServer
echo made
made
make[1]: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src/blatz'
make: Leaving directory `/var/tmp/portage/sci-biology/ucsc-genome-browser-221/work/kent/src'
>>> Source compiled.
>>> Test phase [not enabled]: sci-biology/ucsc-genome-browser-221

>>> Install ucsc-genome-browser-221 into /var/tmp/portage/sci-biology/ucsc-genome-browser-221/image/ category sci-biology
 [32;01m*[0m (info) src/product/README.QuickStart (lang: en)
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/product/README.cvs.access
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/product/README.install
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/product/README.debug
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/product/README.trackDb
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/product/README.QuickStart
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/product/README.building.source
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/product/README.local.cvs.source
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/product/README.mysql.setup
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/product/README.customTracks.dataBase
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/gfServer/README.blat
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/parasol/version.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/parasol/todo.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/parasol/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/jkOwnLib/version.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/jkOwnLib/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/oneShot/bison/mfcalc/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/oneShot/bison/incalc/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/oneShot/bison/ltcalc/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/oneShot/bison/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/blatz/version.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/blatz/algorithm.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/blatz/blatz.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/shortReads/splat/version.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/shortReads/sufxMake/sufx.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/isPcr/version.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/isPcr/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/lib/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/lib/maf.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/blat/version.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/txPaper/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/txPaper/samples/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/chimpStuff/chimpChromQuals/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/protein/spToDb/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/protein/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/hgc/hgcData/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/oneShot/freen/freen.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/poster/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/das/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/zoo/alignToPsl/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/zoo/transitivityCheck/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/zoo/analyze4d/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/encode/hgEncodeSubmit/log/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/encode/hgEncodeSubmit/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/encode/hgEncodeSubmit/vendor/plugins/spawn/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/encode/hgEncodeSubmit/public/plugin_assets/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/encode/hgEncodeSubmit/README.UCSC
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/encode/hgEncodeSubmit/doc/README_FOR_APP
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/autoXml/autoXml.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/ratStuff/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/instinct/hgHeatmap2/api/hgCircleMap_API.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/gbToFaRa/gbToFaRa.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/gbToFaRa/keyFields.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/qaPushQ/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/visiGene/visiGeneLoad/visiGeneLoad.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/visiGene/hgVisiGene/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/visiGene/jackson/makeJackson.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/bioImage/makeBioImage.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/geneBounds/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/makeDb/hgAar/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/makeDb/genbank/src/orfeome/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/makeDb/genbank/src/process/keyFields.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/makeDb/genbank/src/rtdb/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/makeDb/genbank/src/ccds/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/makeDb/genbank/src/mgc/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/makeDb/genbank/doc/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/makeDb/schema/joiner.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/makeDb/outside/ensembl/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/makeDb/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/makeDb/hgLoadOut/README.txt
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/makeDb/trackDb/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/makeDb/makeLoChain/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/mouseStuff/netFormat.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/mouseStuff/blastzScripts/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/mouseStuff/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/mouseStuff/chainFormat.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/genePredToMafFrames/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/sqlToXml/sqlToXml.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/ccTrack/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/txCds/README
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/autoSql/autoSql.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/hgGene/hgGeneData.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/txGraph/README
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/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/gigAssembler/ooGreedy/orderList.doc
/var/tmp/portage/sci-biology/ucsc-genome-browser-221/image//usr/share/doc/ucsc-genome-browser-221/./src/hg/gigAssembler/pairedReads/README
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>>> Completed installing ucsc-genome-browser-221 into /var/tmp/portage/sci-biology/ucsc-genome-browser-221/image/

[31;01m * [39;49;00mThis package will overwrite one or more files that may belong to other
[31;01m * [39;49;00mpackages (see list below). You can use a command such as `portageq
[31;01m * [39;49;00mowners / <filename>` to identify the installed package that owns a
[31;01m * [39;49;00mfile. If portageq reports that only one package owns a file then do
[31;01m * [39;49;00mNOT file a bug report. A bug report is only useful if it identifies at
[31;01m * [39;49;00mleast two or more packages that are known to install the same file(s).
[31;01m * [39;49;00mIf a collision occurs and you can not explain where the file came from
[31;01m * [39;49;00mthen you should simply ignore the collision since there is not enough
[31;01m * [39;49;00minformation to determine if a real problem exists. Please do NOT file
[31;01m * [39;49;00ma bug report at http://bugs.gentoo.org unless you report exactly which
[31;01m * [39;49;00mtwo packages install the same file(s). Once again, please do NOT file
[31;01m * [39;49;00ma bug report unless you have completely understood the above message.
[31;01m * [39;49;00m
[31;01m * [39;49;00mDetected file collision(s):
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[31;01m * [39;49;00mPackage 'sci-biology/ucsc-genome-browser-221' NOT merged due to file
[31;01m * [39;49;00mcollisions. If necessary, refer to your elog messages for the whole
[31;01m * [39;49;00mcontent of the above message.