emerge numeric log

dev-python:numeric-24.2-r6:20091201-100124.log (text/plain), 13.92 KB, created by Michał Kiedrowicz on 2009-12-01 10:11:36 UTC

>>> Unpacking source...
>>> Unpacking Numeric-24.2.tar.gz to /var/tmp/portage/dev-python/numeric-24.2-r6/work
 * Applying numeric-24.2-arrayobject.patch ...
  [ ok ]
 * Applying numeric-24.2-umath.patch ...
  [ ok ]
 * Applying numeric-24.2-eigen.patch ...
  [ ok ]
 * Applying numeric-24.2-test.patch ...
  [ ok ]
 * Applying numeric-24.2-dotblas.patch ...
  [ ok ]
 * Applying numeric-24.2.ranf.c.patch ...
  [ ok ]
 * Applying numeric-24.2-interix3.patch ...
  [ ok ]
>>> Source unpacked in /var/tmp/portage/dev-python/numeric-24.2-r6/work
>>> Compiling source in /var/tmp/portage/dev-python/numeric-24.2-r6/work/Numeric-24.2 ...
python setup.py build
running build
running build_py
creating build
creating build/lib.linux-x86_64-2.6
copying Lib/Matrix.py -> build/lib.linux-x86_64-2.6
copying Lib/UserArray.py -> build/lib.linux-x86_64-2.6
copying Lib/MLab.py -> build/lib.linux-x86_64-2.6
copying Lib/Precision.py -> build/lib.linux-x86_64-2.6
copying Lib/RandomArray.py -> build/lib.linux-x86_64-2.6
copying Lib/LinearAlgebra.py -> build/lib.linux-x86_64-2.6
copying Lib/numeric_version.py -> build/lib.linux-x86_64-2.6
copying Lib/ArrayPrinter.py -> build/lib.linux-x86_64-2.6
copying Lib/Numeric.py -> build/lib.linux-x86_64-2.6
creating build/lib.linux-x86_64-2.6/FFT
copying Packages/FFT/Lib/FFT.py -> build/lib.linux-x86_64-2.6/FFT
copying Packages/FFT/Lib/__init__.py -> build/lib.linux-x86_64-2.6/FFT
creating build/lib.linux-x86_64-2.6/MA
copying Packages/MA/Lib/MA.py -> build/lib.linux-x86_64-2.6/MA
copying Packages/MA/Lib/MA_version.py -> build/lib.linux-x86_64-2.6/MA
copying Packages/MA/Lib/__init__.py -> build/lib.linux-x86_64-2.6/MA
creating build/lib.linux-x86_64-2.6/RNG
copying Packages/RNG/Lib/Statistics.py -> build/lib.linux-x86_64-2.6/RNG
copying Packages/RNG/Lib/__init__.py -> build/lib.linux-x86_64-2.6/RNG
creating build/lib.linux-x86_64-2.6/Numeric_headers
copying Include/__init__.py -> build/lib.linux-x86_64-2.6/Numeric_headers
creating build/lib.linux-x86_64-2.6/Numeric_headers/Numeric
copying Include/Numeric/f2c.h -> build/lib.linux-x86_64-2.6/Numeric_headers/Numeric
copying Include/Numeric/ufuncobject.h -> build/lib.linux-x86_64-2.6/Numeric_headers/Numeric
copying Include/Numeric/arrayobject.h -> build/lib.linux-x86_64-2.6/Numeric_headers/Numeric
copying Include/Numeric/ranlib.h -> build/lib.linux-x86_64-2.6/Numeric_headers/Numeric
running build_ext
building '_numpy' extension
creating build/temp.linux-x86_64-2.6
creating build/temp.linux-x86_64-2.6/Src
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/_numpymodule.c -o build/temp.linux-x86_64-2.6/Src/_numpymodule.o
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/arrayobject.c -o build/temp.linux-x86_64-2.6/Src/arrayobject.o
Src/arrayobject.c:1101: warning: initialization from incompatible pointer type
Src/arrayobject.c:1186: warning: initialization from incompatible pointer type
Src/arrayobject.c:1187: warning: initialization from incompatible pointer type
Src/arrayobject.c:1188: warning: initialization from incompatible pointer type
Src/arrayobject.c:1189: warning: initialization from incompatible pointer type
Src/arrayobject.c:1637: warning: initialization from incompatible pointer type
Src/arrayobject.c:1639: warning: ‘intargfunc’ is deprecated
Src/arrayobject.c:1639: warning: initialization from incompatible pointer type
Src/arrayobject.c:1640: warning: ‘intargfunc’ is deprecated
Src/arrayobject.c:1640: warning: initialization from incompatible pointer type
Src/arrayobject.c:1641: warning: ‘intintargfunc’ is deprecated
Src/arrayobject.c:1641: warning: initialization from incompatible pointer type
Src/arrayobject.c:1642: warning: initialization from incompatible pointer type
Src/arrayobject.c:1643: warning: initialization from incompatible pointer type
Src/arrayobject.c: In function ‘array_frominterface’:
Src/arrayobject.c:2898: warning: passing argument 3 of ‘PyObject_AsWriteBuffer’ from incompatible pointer type
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/ufuncobject.c -o build/temp.linux-x86_64-2.6/Src/ufuncobject.o
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -march=core2 -O2 -pipe -g build/temp.linux-x86_64-2.6/Src/_numpymodule.o build/temp.linux-x86_64-2.6/Src/arrayobject.o build/temp.linux-x86_64-2.6/Src/ufuncobject.o -L/usr/lib64 -lpython2.6 -o build/lib.linux-x86_64-2.6/_numpy.so
building 'multiarray' extension
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/multiarraymodule.c -o build/temp.linux-x86_64-2.6/Src/multiarraymodule.o
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -march=core2 -O2 -pipe -g build/temp.linux-x86_64-2.6/Src/multiarraymodule.o -L/usr/lib64 -lpython2.6 -o build/lib.linux-x86_64-2.6/multiarray.so
building 'umath' extension
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -DHAVE_INVERSE_HYPERBOLIC=1 -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/umathmodule.c -o build/temp.linux-x86_64-2.6/Src/umathmodule.o
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -march=core2 -O2 -pipe -g build/temp.linux-x86_64-2.6/Src/umathmodule.o -L/usr/lib64 -lm -lpython2.6 -o build/lib.linux-x86_64-2.6/umath.so
building 'arrayfns' extension
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/arrayfnsmodule.c -o build/temp.linux-x86_64-2.6/Src/arrayfnsmodule.o
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -march=core2 -O2 -pipe -g build/temp.linux-x86_64-2.6/Src/arrayfnsmodule.o -L/usr/lib64 -lpython2.6 -o build/lib.linux-x86_64-2.6/arrayfns.so
building 'ranlib' extension
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/ranlibmodule.c -o build/temp.linux-x86_64-2.6/Src/ranlibmodule.o
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/ranlib.c -o build/temp.linux-x86_64-2.6/Src/ranlib.o
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/com.c -o build/temp.linux-x86_64-2.6/Src/com.o
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/linpack.c -o build/temp.linux-x86_64-2.6/Src/linpack.o
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -march=core2 -O2 -pipe -g build/temp.linux-x86_64-2.6/Src/ranlibmodule.o build/temp.linux-x86_64-2.6/Src/ranlib.o build/temp.linux-x86_64-2.6/Src/com.o build/temp.linux-x86_64-2.6/Src/linpack.o -L/usr/lib64 -lpython2.6 -o build/lib.linux-x86_64-2.6/ranlib.so
building 'lapack_lite' extension
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/lapack_litemodule.c -o build/temp.linux-x86_64-2.6/Src/lapack_litemodule.o
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/f2c_lite.c -o build/temp.linux-x86_64-2.6/Src/f2c_lite.o
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/zlapack_lite.c -o build/temp.linux-x86_64-2.6/Src/zlapack_lite.o
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/dlapack_lite.c -o build/temp.linux-x86_64-2.6/Src/dlapack_lite.o
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/dlamch.c -o build/temp.linux-x86_64-2.6/Src/dlamch.o
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Src/blas_lite.c -o build/temp.linux-x86_64-2.6/Src/blas_lite.o
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -march=core2 -O2 -pipe -g build/temp.linux-x86_64-2.6/Src/lapack_litemodule.o build/temp.linux-x86_64-2.6/Src/f2c_lite.o build/temp.linux-x86_64-2.6/Src/zlapack_lite.o build/temp.linux-x86_64-2.6/Src/dlapack_lite.o build/temp.linux-x86_64-2.6/Src/dlamch.o build/temp.linux-x86_64-2.6/Src/blas_lite.o -L/usr/lib64 -lpython2.6 -o build/lib.linux-x86_64-2.6/lapack_lite.so
building 'FFT.fftpack' extension
creating build/temp.linux-x86_64-2.6/Packages
creating build/temp.linux-x86_64-2.6/Packages/FFT
creating build/temp.linux-x86_64-2.6/Packages/FFT/Src
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Packages/FFT/Src/fftpackmodule.c -o build/temp.linux-x86_64-2.6/Packages/FFT/Src/fftpackmodule.o
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Packages/FFT/Src/fftpack.c -o build/temp.linux-x86_64-2.6/Packages/FFT/Src/fftpack.o
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -march=core2 -O2 -pipe -g build/temp.linux-x86_64-2.6/Packages/FFT/Src/fftpackmodule.o build/temp.linux-x86_64-2.6/Packages/FFT/Src/fftpack.o -L/usr/lib64 -lpython2.6 -o build/lib.linux-x86_64-2.6/FFT/fftpack.so
building 'RNG.RNG' extension
creating build/temp.linux-x86_64-2.6/Packages/RNG
creating build/temp.linux-x86_64-2.6/Packages/RNG/Src
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Packages/RNG/Src/RNGmodule.c -o build/temp.linux-x86_64-2.6/Packages/RNG/Src/RNGmodule.o
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Packages/RNG/Src/ranf.c -o build/temp.linux-x86_64-2.6/Packages/RNG/Src/ranf.o
x86_64-pc-linux-gnu-gcc -pthread -DNDEBUG -march=core2 -O2 -pipe -g -fPIC -IInclude -IPackages/FFT/Include -IPackages/RNG/Include -I/usr/include/python2.6 -c Packages/RNG/Src/pmath_rng.c -o build/temp.linux-x86_64-2.6/Packages/RNG/Src/pmath_rng.o
x86_64-pc-linux-gnu-gcc -pthread -shared -Wl,-O1 -march=core2 -O2 -pipe -g build/temp.linux-x86_64-2.6/Packages/RNG/Src/RNGmodule.o build/temp.linux-x86_64-2.6/Packages/RNG/Src/ranf.o build/temp.linux-x86_64-2.6/Packages/RNG/Src/pmath_rng.o -L/usr/lib64 -lpython2.6 -o build/lib.linux-x86_64-2.6/RNG/RNG.so
MA Version 12.2.0
Numeric Version 24.2
>>> Source compiled.
......E.............E......E..E..............
======================================================================
ERROR: test concatenate
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/numeric-24.2-r6/work/Numeric-24.2/Test/test.py", line 433, in testConcatenate
    assert_eq(Numeric.concatenate((self.a[:3], self.a[3:])), [0,1,2,3,4,5])
  File "/var/tmp/portage/dev-python/numeric-24.2-r6/work/Numeric-24.2/Test/test.py", line 28, in assert_eq
    assert eq(a,b)
  File "/var/tmp/portage/dev-python/numeric-24.2-r6/work/Numeric-24.2/Test/test.py", line 24, in eq
    (aa.shape, a, ab.shape, b))
ValueError: sequences have different shapes:
a(3,)=array([0, 1, 2])
b(6,)=[0, 1, 2, 3, 4, 5]

======================================================================
ERROR: Test of average function.
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/numeric-24.2-r6/work/Numeric-24.2/Test/test.py", line 297, in testAverage
    c.shape=(3,2)
ValueError: total size of new array must be unchanged

======================================================================
ERROR: Test various object arrays
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/numeric-24.2-r6/work/Numeric-24.2/Test/test.py", line 334, in testObject
    a = Numeric.array([f,w,b],'O')
ValueError: invalid input sequence

======================================================================
ERROR: Test slicing, like x[1:3]
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/var/tmp/portage/dev-python/numeric-24.2-r6/work/Numeric-24.2/Test/test.py", line 141, in testSlice
    assert_eq(a[0:], a)
  File "/var/tmp/portage/dev-python/numeric-24.2-r6/work/Numeric-24.2/Test/test.py", line 28, in assert_eq
    assert eq(a,b)
  File "/var/tmp/portage/dev-python/numeric-24.2-r6/work/Numeric-24.2/Test/test.py", line 24, in eq
    (aa.shape, a, ab.shape, b))
ValueError: sequences have different shapes:
a(0,)=zeros((0,), 'l')
b(4,)=array([1, 2, 3, 4])

----------------------------------------------------------------------
Ran 45 tests in 0.077s

FAILED (errors=4)
 * 
 * ERROR: dev-python/numeric-24.2-r6 failed.
 * Call stack:
 *               ebuild.sh, line   49:  Called src_test
 *             environment, line 3218:  Called die
 * The specific snippet of code:
 *       PYTHONPATH=. "${python}" "${S}"/Test/test.py || die "test failed"
 *  The die message:
 *   test failed
 * 
 * If you need support, post the topmost build error, and the call stack if relevant.
 * A complete build log is located at '/var/log/portage/dev-python:numeric-24.2-r6:20091201-100124.log'.
 * The ebuild environment file is located at '/var/tmp/portage/dev-python/numeric-24.2-r6/temp/environment'.