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Gentoo's Bugzilla – Attachment 203756 Details for
Bug 284431
sci-chemistry/gromacs-4.0.5 buffer overflow issue
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No buffer overflow occures when specifying absolute path
gromacs_noerror.txt (text/plain), 2.67 KB, created by
Yasuyuki Araki
on 2009-09-11 02:25:43 UTC
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Description:
No buffer overflow occures when specifying absolute path
Filename:
MIME Type:
Creator:
Yasuyuki Araki
Created:
2009-09-11 02:25:43 UTC
Size:
2.67 KB
patch
obsolete
>araki@hoata ~ $ export LANG=C >araki@hoata ~ $ /usr/bin/grompp > :-) G R O M A C S (-: > > Go Rough, Oppose Many Angry Chinese Serial killers > > :-) VERSION 4.0.5 (-: > > > Written by David van der Spoel, Erik Lindahl, Berk Hess, and others. > Copyright (c) 1991-2000, University of Groningen, The Netherlands. > Copyright (c) 2001-2008, The GROMACS development team, > check out http://www.gromacs.org for more information. > > This program is free software; you can redistribute it and/or > modify it under the terms of the GNU General Public License > as published by the Free Software Foundation; either version 2 > of the License, or (at your option) any later version. > > :-) /usr/bin/grompp (-: > >Option Filename Type Description >------------------------------------------------------------ > -f grompp.mdp Input, Opt. grompp input file with MD parameters > -po mdout.mdp Output grompp input file with MD parameters > -c conf.gro Input Structure file: gro g96 pdb tpr tpb tpa > -r conf.gro Input, Opt. Structure file: gro g96 pdb tpr tpb tpa > -rb conf.gro Input, Opt. Structure file: gro g96 pdb tpr tpb tpa > -n index.ndx Input, Opt. Index file > -p topol.top Input Topology file > -pp processed.top Output, Opt. Topology file > -o topol.tpr Output Run input file: tpr tpb tpa > -t traj.trr Input, Opt. Full precision trajectory: trr trj cpt > -e ener.edr Input, Opt. Energy file: edr ene > >Option Type Value Description >------------------------------------------------------ >-[no]h bool no Print help info and quit >-nice int 0 Set the nicelevel >-[no]v bool yes Be loud and noisy >-time real -1 Take frame at or first after this time. >-[no]rmvsbds bool yes Remove constant bonded interactions with virtual > sites >-maxwarn int 0 Number of allowed warnings during input processing >-[no]zero bool no Set parameters for bonded interactions without > defaults to zero instead of generating an error >-[no]renum bool yes Renumber atomtypes and minimize number of > atomtypes > > >------------------------------------------------------- >Program grompp, VERSION 4.0.5 >Source code file: futil.c, line: 330 > >File input/output error: >grompp.mdp >------------------------------------------------------- > >"Yeah, uh uh, Neil's Head !" (Neil) >
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bug 284431
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203754
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