seaview-4.0.ebuild

seaview-4.0.ebuild (text/plain), 2.11 KB, created by Martin Mokrejš on 2009-05-26 16:27:25 UTC

# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-20071113.ebuild,v 1.3 2008/08/26 15:08:19 ribosome Exp $

inherit toolchain-funcs multilib

DESCRIPTION="A graphical multiple sequence alignment editor"
HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"

MY_PF=${PF/-/_}
# ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/seaview_3.2.tar.gz
SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/${MY_PF}.tar.gz"
#SRC_URI="mirror://gentoo/${PV}.tar.gz"

LICENSE="public-domain"

SLOT="0"
KEYWORDS="amd64 ppc x86"
IUSE="pdf"

# =media-libs/pdflib-7* # PDF support not enabled by default in seview-4.00
DEPEND="x11-libs/fltk
	pdf? ( media-libs/pdflib )
	sci-biology/clustalw
	sci-biology/muscle
	sci-biology/phyml"

S=${WORKDIR}

src_unpack() {
	unpack ${A}
	cd ${S}/seaview || die "Cannot chdir to ${S}/seaview"

	sed -i \
		-e '/^FLTK/d' \
		-e '/^X11/d' \
		-e "s:^CXX.*:CXX = $(tc-getCXX):" \
		-e "s:\$(OPT)::" \
		-e "s:\$(DEBUG)::" \
		-e 's:-I$(FLTK):-I/usr/include/fltk:' \
		-e 's:-I$(X11)/include:-I/usr/include/X11R6:' \
		-e "s:\(^CFLAGS .*\):\1 ${CXXFLAGS}:" \
		-e "s:#IFLTK = -I/usr/include/fltk:IFLTK = $(fltk-config --use-images --cxxflags):" \
		-e "s:#LFLTK = -L.*:LFLTK = $(fltk-config --use-images --ldflags):" \
		-e "s:-L\$(X11)/lib:-L/usr/$(get_libdir)/X11:" \
		-e "s:^#HELPFILE= -DDEFAULT_HELPFILE:HELPFILE= -DDEFAULT_HELPFILE:" \
		-e "s:^#PHYMLNAME= -DPHYMLNAME:PHYMLNAME= -DPHYMLNAME:" \
		Makefile || die "sed Makefile failed"

	if use pdf; then
		sed -i \
			-e "s:EXTRALIBS=:EXTRALIBS= -lpdf :" \
			-e "s:-DNO_PDF::" \
			-e "s:postscript.o:pdf.o:" \
			Makefile || die "sed failed while editing Makefile to enable pdf output"
	fi
}

src_compile(){
	cd ${S}/seaview || die "Cannot chdir to ${S}/seaview"
	make
}

src_install() {
	cd ${S}/seaview || die "Cannot chdir to ${S}/seaview"

	dobin seaview
	
	# /usr/share/seaview/seaview.html is hardcoded in the binary, see Makefile
	insinto /usr/share/seaview
	doins example.nxs seaview.html

	insinto /usr/share/seaview/images
	doins seaview.xpm
}