ebuild for rosetta++ scripts in plain text format

rosetta_scripts-2.3.0.ebuild (text/plain), 1.87 KB, created by Hugo Mildenberger on 2008-12-09 17:31:02 UTC

# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: $

inherit eutils

EAPI="2"
DESCRIPTION="scripts for use with rosetta++"
HOMEPAGE="http://www.rosettacommons.org/"
SRC_URI="rosetta_scripts-${PV}.tgz"
RESTRICT="fetch test"
LICENSE="rosetta"
SLOT="0"
KEYWORDS="~x86"
IUSE=""
RDEPEND="sci-libs/gsl" # and many other (psipred, nbci_blast, ...)
DEPEND="sys-apps/grep sys-apps/findutils sys-apps/sed"
S="${WORKDIR}/rosetta_scripts"

MY_DESTDIR="/usr/share/rosetta-${PV}"

pkg_nofetch() {
	einfo "Please fill out the registration form at "
	einfo "  http://www.uwopendoor.org/LicenseSoftware.asp?softwareid=17"
	einfo "Then download the file ${A} manually and place it into ${DISTDIR}"
}

src_configure() {
	#UPSTREAM: get rid of .svn directories in distribution ...
	find . -name '.svn'  -exec rm -rf {} ';' 2>/dev/null
	
	#UPSTREAM: get rid of precompiled binaries ...
	rm "cluster_tools/C/cluster_info_silent.out"
	rm "ligand/molecule.exe"
	rm "abinitio/src/rosetta_cluster/rosetta_cluster"
	rm "abinitio/bin/reconstruct_PDB_by_index"

	local script="docking/paths.txt"
	sed -e "s:/home/mdaily/simcode/rosetta_database/:${MY_DESTDIR}/database:g" \
			"${script}" > "${script}.tmp" \
		&&  rm "${script}" \
		&&  mv "${script}.tmp" "${script}"

	#UPSTREAM: to be continued for all hard codings within rosetta scripts ...
	local hard=`grep -Rl "/home" *`
	if test -n "${hard}"; then
	   eqawarn "QA Notice:the following rosetta scripts still contain hardcoded paths"
	   eqawarn "${hard}"
	   eqawarn "consider to file a bug report to [e-mail]"
	fi
}

src_unpack() {
	unpack ${A}
}

src_test() {
	elog "test not implemented"
}

src_install() {
	local scriptdir="${MY_DESTDIR}/scripts"
	dodir "${scriptdir}" && insinto "${scriptdir}" && doins -r "${S}"/* || die
	elog "rosetta scripts had been installed in ${scriptdir}"
}