config.log

config.log (text/plain), 49.00 KB, created by Justin Lecher (RETIRED) on 2007-12-17 18:04:39 UTC

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by configure, which was
generated by GNU Autoconf 2.61.  Invocation command line was

  $ ./configure --prefix=/usr --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --includedir=${prefix}/include/coot --with-gtkcanvas-prefix=/usr --with-clipper-prefix=/usr --with-mmdb-prefix=/usr --with-ssmlib-prefix=/usr --with-guile=/usr --with-python=/usr --with-guile-gtk --with-gtk2 --build=i686-pc-linux-gnu

## --------- ##
## Platform. ##
## --------- ##

hostname = Hypermachine
uname -m = i686
uname -r = 2.6.23-gentoo-r3
uname -s = Linux
uname -v = #5 SMP Sun Dec 9 14:48:39 CET 2007

/usr/bin/uname -p = Intel(R) Core(TM)2 Quad CPU Q6600 @ 2.40GHz
/bin/uname -X     = unknown

/bin/arch              = i686
/usr/bin/arch -k       = i686
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /usr/lib/ccache/bin
PATH: /usr/local/sbin
PATH: /sbin
PATH: /usr/sbin
PATH: /usr/lib/portage/bin
PATH: /usr/local/bin
PATH: /bin
PATH: /usr/bin
PATH: /opt/bin
PATH: /usr/i686-pc-linux-gnu/gcc-bin/4.1.2
PATH: /opt/intel/cc/10.1.008/bin
PATH: /opt/intel/fc/10.0.026/bin
PATH: /usr/qt/3/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:2073: checking for a BSD-compatible install
configure:2129: result: /usr/bin/install -c
configure:2140: checking whether build environment is sane
configure:2183: result: yes
configure:2211: checking for a thread-safe mkdir -p
configure:2250: result: /bin/mkdir -p
configure:2263: checking for gawk
configure:2279: found /bin/gawk
configure:2290: result: gawk
configure:2301: checking whether make sets $(MAKE)
configure:2322: result: yes
configure:2540: checking for style of include used by make
configure:2568: result: GNU
configure:2598: checking for i686-pc-linux-gnu-gcc
configure:2614: found /usr/lib/ccache/bin/i686-pc-linux-gnu-gcc
configure:2625: result: i686-pc-linux-gnu-gcc
configure:2903: checking for C compiler version
configure:2910: i686-pc-linux-gnu-gcc --version >&5
i686-pc-linux-gnu-gcc (GCC) 4.1.2 (Gentoo 4.1.2 p1.0.2)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:2913: $? = 0
configure:2920: i686-pc-linux-gnu-gcc -v >&5
Using built-in specs.
Target: i686-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.1.2/work/gcc-4.1.2/configure --prefix=/usr --bindir=/usr/i686-pc-linux-gnu/gcc-bin/4.1.2 --includedir=/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/include --datadir=/usr/share/gcc-data/i686-pc-linux-gnu/4.1.2 --mandir=/usr/share/gcc-data/i686-pc-linux-gnu/4.1.2/man --infodir=/usr/share/gcc-data/i686-pc-linux-gnu/4.1.2/info --with-gxx-include-dir=/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/include/g++-v4 --host=i686-pc-linux-gnu --build=i686-pc-linux-gnu --disable-altivec --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --disable-libunwind-exceptions --disable-multilib --enable-libmudflap --disable-libssp --disable-libgcj --with-arch=i686 --enable-languages=c,c++,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu
Thread model: posix
gcc version 4.1.2 (Gentoo 4.1.2 p1.0.2)
configure:2923: $? = 0
configure:2930: i686-pc-linux-gnu-gcc -V >&5
i686-pc-linux-gnu-gcc: '-V' option must have argument
configure:2933: $? = 1
configure:2956: checking for C compiler default output file name
configure:2983: i686-pc-linux-gnu-gcc -O2 -march=prescott -pipe -fomit-frame-pointer   conftest.c  >&5
configure:2986: $? = 0
configure:3024: result: a.out
configure:3041: checking whether the C compiler works
configure:3051: ./a.out
configure:3054: $? = 0
configure:3071: result: yes
configure:3078: checking whether we are cross compiling
configure:3080: result: no
configure:3083: checking for suffix of executables
configure:3090: i686-pc-linux-gnu-gcc -o conftest -O2 -march=prescott -pipe -fomit-frame-pointer   conftest.c  >&5
configure:3093: $? = 0
configure:3117: result: 
configure:3123: checking for suffix of object files
configure:3149: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:3152: $? = 0
configure:3175: result: o
configure:3179: checking whether we are using the GNU C compiler
configure:3208: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:3214: $? = 0
configure:3231: result: yes
configure:3236: checking whether i686-pc-linux-gnu-gcc accepts -g
configure:3266: i686-pc-linux-gnu-gcc -c -g  conftest.c >&5
configure:3272: $? = 0
configure:3371: result: yes
configure:3388: checking for i686-pc-linux-gnu-gcc option to accept ISO C89
configure:3462: i686-pc-linux-gnu-gcc  -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:3468: $? = 0
configure:3491: result: none needed
configure:3511: checking dependency style of i686-pc-linux-gnu-gcc
configure:3602: result: gcc3
configure:3618: checking for library containing strerror
configure:3659: i686-pc-linux-gnu-gcc -o conftest -O2 -march=prescott -pipe -fomit-frame-pointer   conftest.c  >&5
configure:3665: $? = 0
configure:3693: result: none required
configure:3709: checking for i686-pc-linux-gnu-gcc
configure:3736: result: i686-pc-linux-gnu-gcc
configure:4014: checking for C compiler version
configure:4021: i686-pc-linux-gnu-gcc --version >&5
i686-pc-linux-gnu-gcc (GCC) 4.1.2 (Gentoo 4.1.2 p1.0.2)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4024: $? = 0
configure:4031: i686-pc-linux-gnu-gcc -v >&5
Using built-in specs.
Target: i686-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.1.2/work/gcc-4.1.2/configure --prefix=/usr --bindir=/usr/i686-pc-linux-gnu/gcc-bin/4.1.2 --includedir=/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/include --datadir=/usr/share/gcc-data/i686-pc-linux-gnu/4.1.2 --mandir=/usr/share/gcc-data/i686-pc-linux-gnu/4.1.2/man --infodir=/usr/share/gcc-data/i686-pc-linux-gnu/4.1.2/info --with-gxx-include-dir=/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/include/g++-v4 --host=i686-pc-linux-gnu --build=i686-pc-linux-gnu --disable-altivec --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --disable-libunwind-exceptions --disable-multilib --enable-libmudflap --disable-libssp --disable-libgcj --with-arch=i686 --enable-languages=c,c++,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu
Thread model: posix
gcc version 4.1.2 (Gentoo 4.1.2 p1.0.2)
configure:4034: $? = 0
configure:4041: i686-pc-linux-gnu-gcc -V >&5
i686-pc-linux-gnu-gcc: '-V' option must have argument
configure:4044: $? = 1
configure:4047: checking whether we are using the GNU C compiler
configure:4099: result: yes
configure:4104: checking whether i686-pc-linux-gnu-gcc accepts -g
configure:4239: result: yes
configure:4256: checking for i686-pc-linux-gnu-gcc option to accept ISO C89
configure:4359: result: none needed
configure:4379: checking dependency style of i686-pc-linux-gnu-gcc
configure:4470: result: gcc3
configure:4493: checking for i686-pc-linux-gnu-gcc
configure:4520: result: i686-pc-linux-gnu-gcc
configure:4798: checking for C compiler version
configure:4805: i686-pc-linux-gnu-gcc --version >&5
i686-pc-linux-gnu-gcc (GCC) 4.1.2 (Gentoo 4.1.2 p1.0.2)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:4808: $? = 0
configure:4815: i686-pc-linux-gnu-gcc -v >&5
Using built-in specs.
Target: i686-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.1.2/work/gcc-4.1.2/configure --prefix=/usr --bindir=/usr/i686-pc-linux-gnu/gcc-bin/4.1.2 --includedir=/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/include --datadir=/usr/share/gcc-data/i686-pc-linux-gnu/4.1.2 --mandir=/usr/share/gcc-data/i686-pc-linux-gnu/4.1.2/man --infodir=/usr/share/gcc-data/i686-pc-linux-gnu/4.1.2/info --with-gxx-include-dir=/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/include/g++-v4 --host=i686-pc-linux-gnu --build=i686-pc-linux-gnu --disable-altivec --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --disable-libunwind-exceptions --disable-multilib --enable-libmudflap --disable-libssp --disable-libgcj --with-arch=i686 --enable-languages=c,c++,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu
Thread model: posix
gcc version 4.1.2 (Gentoo 4.1.2 p1.0.2)
configure:4818: $? = 0
configure:4825: i686-pc-linux-gnu-gcc -V >&5
i686-pc-linux-gnu-gcc: '-V' option must have argument
configure:4828: $? = 1
configure:4831: checking whether we are using the GNU C compiler
configure:4883: result: yes
configure:4888: checking whether i686-pc-linux-gnu-gcc accepts -g
configure:5023: result: yes
configure:5040: checking for i686-pc-linux-gnu-gcc option to accept ISO C89
configure:5143: result: none needed
configure:5163: checking dependency style of i686-pc-linux-gnu-gcc
configure:5254: result: gcc3
configure:5277: checking how to run the C preprocessor
configure:5317: i686-pc-linux-gnu-gcc -E  conftest.c
configure:5323: $? = 0
configure:5354: i686-pc-linux-gnu-gcc -E  conftest.c
conftest.c:10:28: error: ac_nonexistent.h: No such file or directory
configure:5360: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE "coot"
| #define VERSION "0.3.3"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:5393: result: i686-pc-linux-gnu-gcc -E
configure:5422: i686-pc-linux-gnu-gcc -E  conftest.c
configure:5428: $? = 0
configure:5459: i686-pc-linux-gnu-gcc -E  conftest.c
conftest.c:10:28: error: ac_nonexistent.h: No such file or directory
configure:5465: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE "coot"
| #define VERSION "0.3.3"
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:5503: checking for grep that handles long lines and -e
configure:5577: result: /bin/grep
configure:5582: checking for egrep
configure:5660: result: /bin/grep -E
configure:5665: checking for ANSI C header files
configure:5695: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:5701: $? = 0
configure:5800: i686-pc-linux-gnu-gcc -o conftest -O2 -march=prescott -pipe -fomit-frame-pointer   conftest.c  >&5
configure:5803: $? = 0
configure:5809: ./conftest
configure:5812: $? = 0
configure:5829: result: yes
configure:5854: checking for i686-pc-linux-gnu-g++
configure:5870: found /usr/lib/ccache/bin/i686-pc-linux-gnu-g++
configure:5881: result: i686-pc-linux-gnu-g++
configure:5956: checking for C++ compiler version
configure:5963: i686-pc-linux-gnu-g++ --version >&5
i686-pc-linux-gnu-g++ (GCC) 4.1.2 (Gentoo 4.1.2 p1.0.2)
Copyright (C) 2006 Free Software Foundation, Inc.
This is free software; see the source for copying conditions.  There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.

configure:5966: $? = 0
configure:5973: i686-pc-linux-gnu-g++ -v >&5
Using built-in specs.
Target: i686-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.1.2/work/gcc-4.1.2/configure --prefix=/usr --bindir=/usr/i686-pc-linux-gnu/gcc-bin/4.1.2 --includedir=/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/include --datadir=/usr/share/gcc-data/i686-pc-linux-gnu/4.1.2 --mandir=/usr/share/gcc-data/i686-pc-linux-gnu/4.1.2/man --infodir=/usr/share/gcc-data/i686-pc-linux-gnu/4.1.2/info --with-gxx-include-dir=/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/include/g++-v4 --host=i686-pc-linux-gnu --build=i686-pc-linux-gnu --disable-altivec --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --disable-libunwind-exceptions --disable-multilib --enable-libmudflap --disable-libssp --disable-libgcj --with-arch=i686 --enable-languages=c,c++,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu
Thread model: posix
gcc version 4.1.2 (Gentoo 4.1.2 p1.0.2)
configure:5976: $? = 0
configure:5983: i686-pc-linux-gnu-g++ -V >&5
i686-pc-linux-gnu-g++: '-V' option must have argument
configure:5986: $? = 1
configure:5989: checking whether we are using the GNU C++ compiler
configure:6018: i686-pc-linux-gnu-g++ -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.cpp >&5
configure:6024: $? = 0
configure:6041: result: yes
configure:6046: checking whether i686-pc-linux-gnu-g++ accepts -g
configure:6076: i686-pc-linux-gnu-g++ -c -g  conftest.cpp >&5
configure:6082: $? = 0
configure:6181: result: yes
configure:6206: checking dependency style of i686-pc-linux-gnu-g++
configure:6297: result: gcc3
configure:6390: checking build system type
configure:6408: result: i686-pc-linux-gnu
configure:6430: checking host system type
configure:6445: result: i686-pc-linux-gnu
configure:6467: checking for a sed that does not truncate output
configure:6523: result: /bin/sed
configure:6537: checking for ld used by i686-pc-linux-gnu-gcc
configure:6604: result: /usr/i686-pc-linux-gnu/bin/ld
configure:6613: checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld
configure:6628: result: yes
configure:6633: checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files
configure:6640: result: -r
configure:6658: checking for BSD-compatible nm
configure:6707: result: /usr/bin/nm -B
configure:6711: checking whether ln -s works
configure:6715: result: yes
configure:6722: checking how to recognize dependent libraries
configure:6908: result: pass_all
configure:7157: checking for sys/types.h
configure:7178: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:7184: $? = 0
configure:7200: result: yes
configure:7157: checking for sys/stat.h
configure:7178: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:7184: $? = 0
configure:7200: result: yes
configure:7157: checking for stdlib.h
configure:7178: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:7184: $? = 0
configure:7200: result: yes
configure:7157: checking for string.h
configure:7178: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:7184: $? = 0
configure:7200: result: yes
configure:7157: checking for memory.h
configure:7178: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:7184: $? = 0
configure:7200: result: yes
configure:7157: checking for strings.h
configure:7178: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:7184: $? = 0
configure:7200: result: yes
configure:7157: checking for inttypes.h
configure:7178: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:7184: $? = 0
configure:7200: result: yes
configure:7157: checking for stdint.h
configure:7178: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:7184: $? = 0
configure:7200: result: yes
configure:7157: checking for unistd.h
configure:7178: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:7184: $? = 0
configure:7200: result: yes
configure:7227: checking dlfcn.h usability
configure:7244: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:7250: $? = 0
configure:7264: result: yes
configure:7268: checking dlfcn.h presence
configure:7283: i686-pc-linux-gnu-gcc -E  conftest.c
configure:7289: $? = 0
configure:7303: result: yes
configure:7331: checking for dlfcn.h
configure:7339: result: yes
configure:7362: checking how to run the C++ preprocessor
configure:7398: i686-pc-linux-gnu-g++ -E  conftest.cpp
configure:7404: $? = 0
configure:7435: i686-pc-linux-gnu-g++ -E  conftest.cpp
conftest.cpp:21:28: error: ac_nonexistent.h: No such file or directory
configure:7441: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE "coot"
| #define VERSION "0.3.3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:7474: result: i686-pc-linux-gnu-g++ -E
configure:7503: i686-pc-linux-gnu-g++ -E  conftest.cpp
configure:7509: $? = 0
configure:7540: i686-pc-linux-gnu-g++ -E  conftest.cpp
conftest.cpp:21:28: error: ac_nonexistent.h: No such file or directory
configure:7546: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME ""
| #define PACKAGE_TARNAME ""
| #define PACKAGE_VERSION ""
| #define PACKAGE_STRING ""
| #define PACKAGE_BUGREPORT ""
| #define PACKAGE "coot"
| #define VERSION "0.3.3"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:7595: checking for i686-pc-linux-gnu-g77
configure:7625: result: no
configure:7595: checking for i686-pc-linux-gnu-xlf
configure:7625: result: no
configure:7595: checking for i686-pc-linux-gnu-f77
configure:7625: result: no
configure:7595: checking for i686-pc-linux-gnu-frt
configure:7625: result: no
configure:7595: checking for i686-pc-linux-gnu-pgf77
configure:7625: result: no
configure:7595: checking for i686-pc-linux-gnu-cf77
configure:7625: result: no
configure:7595: checking for i686-pc-linux-gnu-fort77
configure:7625: result: no
configure:7595: checking for i686-pc-linux-gnu-fl32
configure:7625: result: no
configure:7595: checking for i686-pc-linux-gnu-af77
configure:7625: result: no
configure:7595: checking for i686-pc-linux-gnu-xlf90
configure:7625: result: no
configure:7595: checking for i686-pc-linux-gnu-f90
configure:7625: result: no
configure:7595: checking for i686-pc-linux-gnu-pgf90
configure:7625: result: no
configure:7595: checking for i686-pc-linux-gnu-pghpf
configure:7625: result: no
configure:7595: checking for i686-pc-linux-gnu-epcf90
configure:7625: result: no
configure:7595: checking for i686-pc-linux-gnu-gfortran
configure:7611: found /usr/bin/i686-pc-linux-gnu-gfortran
configure:7622: result: i686-pc-linux-gnu-gfortran
configure:7696: checking for Fortran 77 compiler version
configure:7703: i686-pc-linux-gnu-gfortran --version >&5
GNU Fortran 95 (GCC) 4.1.2 (Gentoo 4.1.2 p1.0.2)
Copyright (C) 2006 Free Software Foundation, Inc.

GNU Fortran comes with NO WARRANTY, to the extent permitted by law.
You may redistribute copies of GNU Fortran
under the terms of the GNU General Public License.
For more information about these matters, see the file named COPYING

configure:7706: $? = 0
configure:7713: i686-pc-linux-gnu-gfortran -v >&5
Using built-in specs.
Target: i686-pc-linux-gnu
Configured with: /var/tmp/portage/sys-devel/gcc-4.1.2/work/gcc-4.1.2/configure --prefix=/usr --bindir=/usr/i686-pc-linux-gnu/gcc-bin/4.1.2 --includedir=/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/include --datadir=/usr/share/gcc-data/i686-pc-linux-gnu/4.1.2 --mandir=/usr/share/gcc-data/i686-pc-linux-gnu/4.1.2/man --infodir=/usr/share/gcc-data/i686-pc-linux-gnu/4.1.2/info --with-gxx-include-dir=/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/include/g++-v4 --host=i686-pc-linux-gnu --build=i686-pc-linux-gnu --disable-altivec --enable-nls --without-included-gettext --with-system-zlib --disable-checking --disable-werror --enable-secureplt --disable-libunwind-exceptions --disable-multilib --enable-libmudflap --disable-libssp --disable-libgcj --with-arch=i686 --enable-languages=c,c++,fortran --enable-shared --enable-threads=posix --enable-__cxa_atexit --enable-clocale=gnu
Thread model: posix
gcc version 4.1.2 (Gentoo 4.1.2 p1.0.2)
configure:7716: $? = 0
configure:7723: i686-pc-linux-gnu-gfortran -V >&5
i686-pc-linux-gnu-gfortran: '-V' option must have argument
configure:7726: $? = 1
configure:7734: checking whether we are using the GNU Fortran 77 compiler
configure:7753: i686-pc-linux-gnu-gfortran -c -O2 -march=prescott -pipe -fomit-frame-pointer conftest.F >&5
configure:7759: $? = 0
configure:7776: result: yes
configure:7782: checking whether i686-pc-linux-gnu-gfortran accepts -g
configure:7799: i686-pc-linux-gnu-gfortran -c -g conftest.f >&5
configure:7805: $? = 0
configure:7821: result: yes
configure:7851: checking the maximum length of command line arguments
configure:7963: result: 98304
configure:7975: checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object
configure:8080: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:8083: $? = 0
configure:8087: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ 	]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ 	][ 	]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' \> conftest.nm
configure:8090: $? = 0
configure:8142: i686-pc-linux-gnu-gcc -o conftest -O2 -march=prescott -pipe -fomit-frame-pointer   conftest.c conftstm.o >&5
configure:8145: $? = 0
configure:8183: result: ok
configure:8187: checking for objdir
configure:8202: result: .libs
configure:8254: checking for i686-pc-linux-gnu-ar
configure:8270: found /usr/bin/i686-pc-linux-gnu-ar
configure:8281: result: i686-pc-linux-gnu-ar
configure:8350: checking for i686-pc-linux-gnu-ranlib
configure:8366: found /usr/bin/i686-pc-linux-gnu-ranlib
configure:8377: result: i686-pc-linux-gnu-ranlib
configure:8446: checking for i686-pc-linux-gnu-strip
configure:8462: found /usr/bin/i686-pc-linux-gnu-strip
configure:8473: result: i686-pc-linux-gnu-strip
configure:8750: checking for correct ltmain.sh version
configure:8800: result: yes
configure:8860: checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions
configure:8878: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C
cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C
configure:8882: $? = 0
configure:8895: result: no
configure:8910: checking for i686-pc-linux-gnu-gcc option to produce PIC
configure:9142: result: -fPIC
configure:9150: checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works
configure:9168: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  -fPIC -DPIC conftest.c >&5
configure:9172: $? = 0
configure:9185: result: yes
configure:9213: checking if i686-pc-linux-gnu-gcc static flag -static works
configure:9241: result: yes
configure:9251: checking if i686-pc-linux-gnu-gcc supports -c -o file.o
configure:9272: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  -o out/conftest2.o conftest.c >&5
configure:9276: $? = 0
configure:9298: result: yes
configure:9324: checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries
configure:10304: result: yes
configure:10325: checking whether -lc should be explicitly linked in
configure:10330: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:10333: $? = 0
configure:10348: i686-pc-linux-gnu-gcc -shared conftest.o  -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| grep  -lc  \>/dev/null 2\>\&1
configure:10351: $? = 0
configure:10363: result: no
configure:10371: checking dynamic linker characteristics
configure:10986: result: GNU/Linux ld.so
configure:10995: checking how to hardcode library paths into programs
configure:11020: result: immediate
configure:11034: checking whether stripping libraries is possible
configure:11039: result: yes
configure:11841: checking if libtool supports shared libraries
configure:11843: result: yes
configure:11846: checking whether to build shared libraries
configure:11867: result: yes
configure:11870: checking whether to build static libraries
configure:11874: result: yes
configure:11967: creating libtool
configure:12555: checking for ld used by i686-pc-linux-gnu-g++
configure:12622: result: /usr/i686-pc-linux-gnu/bin/ld
configure:12631: checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld
configure:12646: result: yes
configure:12697: checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries
configure:13671: result: yes
configure:13689: i686-pc-linux-gnu-g++ -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.cpp >&5
configure:13692: $? = 0
configure:13844: checking for i686-pc-linux-gnu-g++ option to produce PIC
configure:14128: result: -fPIC
configure:14136: checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works
configure:14154: i686-pc-linux-gnu-g++ -c -O2 -march=prescott -pipe -fomit-frame-pointer  -fPIC -DPIC conftest.cpp >&5
configure:14158: $? = 0
configure:14171: result: yes
configure:14199: checking if i686-pc-linux-gnu-g++ static flag -static works
configure:14227: result: yes
configure:14237: checking if i686-pc-linux-gnu-g++ supports -c -o file.o
configure:14258: i686-pc-linux-gnu-g++ -c -O2 -march=prescott -pipe -fomit-frame-pointer  -o out/conftest2.o conftest.cpp >&5
configure:14262: $? = 0
configure:14284: result: yes
configure:14310: checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries
configure:14335: result: yes
configure:14402: checking dynamic linker characteristics
configure:14965: result: GNU/Linux ld.so
configure:14974: checking how to hardcode library paths into programs
configure:14999: result: immediate
configure:15533: checking if libtool supports shared libraries
configure:15535: result: yes
configure:15538: checking whether to build shared libraries
configure:15558: result: yes
configure:15561: checking whether to build static libraries
configure:15565: result: yes
configure:15575: checking for i686-pc-linux-gnu-gfortran option to produce PIC
configure:15807: result: -fPIC
configure:15815: checking if i686-pc-linux-gnu-gfortran PIC flag -fPIC works
configure:15833: i686-pc-linux-gnu-gfortran -c -O2 -march=prescott -pipe -fomit-frame-pointer -fPIC conftest.f >&5
configure:15837: $? = 0
configure:15850: result: yes
configure:15878: checking if i686-pc-linux-gnu-gfortran static flag -static works
configure:15906: result: yes
configure:15916: checking if i686-pc-linux-gnu-gfortran supports -c -o file.o
configure:15937: i686-pc-linux-gnu-gfortran -c -O2 -march=prescott -pipe -fomit-frame-pointer -o out/conftest2.o conftest.f >&5
configure:15941: $? = 0
configure:15963: result: yes
configure:15989: checking whether the i686-pc-linux-gnu-gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries
configure:16949: result: yes
configure:17016: checking dynamic linker characteristics
configure:17579: result: GNU/Linux ld.so
configure:17588: checking how to hardcode library paths into programs
configure:17613: result: immediate
configure:21199: checking for i686-pc-linux-gnu-ranlib
configure:21226: result: i686-pc-linux-gnu-ranlib
configure:21296: checking if this is MINGW on Windows
configure:21310: result: no
configure:21374: checking for gsl-config
configure:21392: found /usr/bin/gsl-config
configure:21405: result: /usr/bin/gsl-config
configure:21414: checking for GSL - version >= 1.3
configure:21524: i686-pc-linux-gnu-gcc -o conftest -O2 -march=prescott -pipe -fomit-frame-pointer -I/usr/include   conftest.c  -L/usr/lib -lgsl -lgslcblas -lm >&5
configure:21527: $? = 0
configure:21533: ./conftest
configure:21536: $? = 0
configure:21556: result: yes
configure:21663: checking for i686-pc-linux-gnu-pkg-config
configure:21696: result: no
configure:21706: checking for pkg-config
configure:21724: found /usr/bin/pkg-config
configure:21736: result: /usr/bin/pkg-config
configure:21765: checking pkg-config is at least version 0.9.0
configure:21768: result: yes
configure:21779: checking for GTK
configure:21787: $PKG_CONFIG --exists --print-errors "gtk+-2.0 >= 2.2.0"
configure:21790: $? = 0
configure:21805: $PKG_CONFIG --exists --print-errors "gtk+-2.0 >= 2.2.0"
configure:21808: $? = 0
configure:21884: result: yes
configure:21890: checking for GNOME_CANVAS
configure:21898: $PKG_CONFIG --exists --print-errors "libgnomecanvas-2.0 >= 0.15.0"
configure:21901: $? = 0
configure:21916: $PKG_CONFIG --exists --print-errors "libgnomecanvas-2.0 >= 0.15.0"
configure:21919: $? = 0
configure:21995: result: yes
configure:22033: checking for pkg-config
configure:22064: result: /usr/bin/pkg-config
configure:22086: checking for GtkGLExt - version >= 1.0.0
configure:22215: i686-pc-linux-gnu-gcc -o conftest -O2 -march=prescott -pipe -fomit-frame-pointer -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0     conftest.c -Wl,--export-dynamic -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lgtk-x11-2.0 -lpangox-1.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0    >&5
configure:22218: $? = 0
configure:22224: ./conftest
configure:22227: $? = 0
configure:22247: result: yes (version 1.2.0)
configure:23728: checking for GLUT
configure:23841: i686-pc-linux-gnu-gcc -o conftest -O2 -march=prescott -pipe -fomit-frame-pointer    conftest.c  -lglut  -lXmu -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0   >&5
configure:23847: $? = 0
configure:23864: result: yes
configure:23945: checking for MMDB
configure:23981: i686-pc-linux-gnu-g++ -o conftest  -I/usr/include/mmdb   conftest.cpp  -L/usr/lib -L/usr -lmmdb -lm >&5
configure:23987: $? = 0
configure:24024: i686-pc-linux-gnu-g++ -c  -I/usr/include/mmdb  conftest.cpp >&5
configure:24030: $? = 0
configure:24065: i686-pc-linux-gnu-g++ -c  -I/usr/include/mmdb  conftest.cpp >&5
configure:24071: $? = 0
configure:24091: result: yes
configure:24140: checking for SSMLib
configure:24175: result: /usr
configure:24230: checking for Clipper
configure:24261: i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o conftest  -I/usr/include   conftest.c  -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm >&5
configure:24267: $? = 0
configure:24284: result: yes
configure:24344: checking for guile
configure:24362: found /usr/bin/guile
configure:24374: result: /usr/bin/guile
configure:24392: checking for guile-config
configure:24410: found /usr/bin/guile-config
configure:24422: result: /usr/bin/guile-config
configure:24440: checking for guile-tools
configure:24458: found /usr/bin/guile-tools
configure:24470: result: /usr/bin/guile-tools
configure:24480: checking libguile compile flags
configure:24487: result:  
configure:24489: checking libguile link flags
configure:24496: result:  -lguile -lltdl  -lgmp -lcrypt -lm -lltdl
configure:24504: checking for Python
configure:24563: result: yes
configure:24626: checking for guile-gtk
configure:24657: result: 
configure:24725: checking locale.h usability
configure:24742: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:24748: $? = 0
configure:24762: result: yes
configure:24766: checking locale.h presence
configure:24781: i686-pc-linux-gnu-gcc -E  conftest.c
configure:24787: $? = 0
configure:24801: result: yes
configure:24829: checking for locale.h
configure:24837: result: yes
configure:24851: checking for LC_MESSAGES
configure:24877: i686-pc-linux-gnu-gcc -o conftest -O2 -march=prescott -pipe -fomit-frame-pointer   conftest.c  >&5
configure:24883: $? = 0
configure:24900: result: yes
configure:24929: checking libintl.h usability
configure:24946: i686-pc-linux-gnu-gcc -c -O2 -march=prescott -pipe -fomit-frame-pointer  conftest.c >&5
configure:24952: $? = 0
configure:24966: result: yes
configure:24970: checking libintl.h presence
configure:24985: i686-pc-linux-gnu-gcc -E  conftest.c
configure:24991: $? = 0
configure:25005: result: yes
configure:25033: checking for libintl.h
configure:25040: result: yes
configure:25051: checking for ngettext in libc
configure:25079: i686-pc-linux-gnu-gcc -o conftest -O2 -march=prescott -pipe -fomit-frame-pointer   conftest.c  >&5
configure:25085: $? = 0
configure:25103: result: yes
configure:25107: checking for dgettext in libc
configure:25135: i686-pc-linux-gnu-gcc -o conftest -O2 -march=prescott -pipe -fomit-frame-pointer   conftest.c  >&5
configure:25141: $? = 0
configure:25159: result: yes
configure:25168: checking for bind_textdomain_codeset
configure:25224: i686-pc-linux-gnu-gcc -o conftest -O2 -march=prescott -pipe -fomit-frame-pointer   conftest.c  >&5
configure:25230: $? = 0
configure:25248: result: yes
configure:25735: checking for msgfmt
configure:25762: result: /usr/bin/msgfmt
configure:25775: checking for dcgettext
configure:25831: i686-pc-linux-gnu-gcc -o conftest -O2 -march=prescott -pipe -fomit-frame-pointer   conftest.c   >&5
conftest.c:48: warning: conflicting types for built-in function 'dcgettext'
configure:25837: $? = 0
configure:25855: result: yes
configure:25866: checking if msgfmt accepts -c
configure:25881: $MSGFMT -c -o /dev/null conftest.foo
configure:25884: $? = 0
configure:25886: result: yes
configure:25896: checking for gmsgfmt
configure:25914: found /usr/bin/gmsgfmt
configure:25927: result: /usr/bin/gmsgfmt
configure:25937: checking for xgettext
configure:25964: result: /usr/bin/xgettext
configure:25993: i686-pc-linux-gnu-gcc -o conftest -O2 -march=prescott -pipe -fomit-frame-pointer   conftest.c   >&5
configure:25999: $? = 0
configure:26168: checking for catalogs to be installed
configure:26193: result: 
configure:26426: creating ./config.status

## ---------------------- ##
## Running config.status. ##
## ---------------------- ##

This file was extended by config.status, which was
generated by GNU Autoconf 2.61.  Invocation command line was

  CONFIG_FILES    = 
  CONFIG_HEADERS  = 
  CONFIG_LINKS    = 
  CONFIG_COMMANDS = 
  $ ./config.status 

on Hypermachine

config.status:749: creating Makefile
config.status:749: creating macros/Makefile
config.status:749: creating scheme/Makefile
config.status:749: creating python/Makefile
config.status:749: creating compat/Makefile
config.status:749: creating coot-utils/Makefile
config.status:749: creating ccp4mg-utils/Makefile
config.status:749: creating coords/Makefile
config.status:749: creating db-main/Makefile
config.status:749: creating density-contour/Makefile
config.status:749: creating surface/Makefile
config.status:749: creating coot-surface/Makefile
config.status:749: creating angles/Makefile
config.status:749: creating atom-utils/Makefile
config.status:749: creating mini-mol/Makefile
config.status:749: creating skeleton/Makefile
config.status:749: creating ligand/Makefile
config.status:749: creating geometry/Makefile
config.status:749: creating ideal/Makefile
config.status:749: creating build/Makefile
config.status:749: creating analysis/Makefile
config.status:749: creating sequence-view/Makefile
config.status:749: creating src/Makefile
config.status:749: creating doc/Makefile
config.status:749: creating high-res/Makefile
config.status:749: creating tw/Makefile
config.status:749: creating setup/coot.sh
config.status:749: creating setup/coot.csh
config.status:749: creating python/coot_load_modules.py
config.status:749: creating auxil/Makefile
config.status:749: creating auxil/catcheck/Makefile
config.status:749: creating auxil/rama/Makefile
config.status:749: creating auxil/sec-str/Makefile
config.status:749: creating auxil/strand-analysis/Makefile
config.status:749: creating auxil/vectors/Makefile
config.status:940: executing depfiles commands
config.status:940: executing default-1 commands

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=i686-pc-linux-gnu
ac_cv_c_compiler_gnu=yes
ac_cv_cxx_compiler_gnu=yes
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=set
ac_cv_env_CFLAGS_value='-O2 -march=prescott -pipe -fomit-frame-pointer'
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=set
ac_cv_env_CXXFLAGS_value='-O2 -march=prescott -pipe -fomit-frame-pointer'
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FFLAGS_set=set
ac_cv_env_FFLAGS_value='-O2 -march=prescott -pipe -fomit-frame-pointer'
ac_cv_env_GNOME_CANVAS_CFLAGS_set=
ac_cv_env_GNOME_CANVAS_CFLAGS_value=
ac_cv_env_GNOME_CANVAS_LIBS_set=
ac_cv_env_GNOME_CANVAS_LIBS_value=
ac_cv_env_GTK_CFLAGS_set=
ac_cv_env_GTK_CFLAGS_value=
ac_cv_env_GTK_LIBS_set=
ac_cv_env_GTK_LIBS_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_PKG_CONFIG_set=
ac_cv_env_PKG_CONFIG_value=
ac_cv_env_build_alias_set=set
ac_cv_env_build_alias_value=i686-pc-linux-gnu
ac_cv_env_host_alias_set=set
ac_cv_env_host_alias_value=i686-pc-linux-gnu
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_f77_compiler_gnu=yes
ac_cv_func_bind_textdomain_codeset=yes
ac_cv_func_dcgettext=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_libintl_h=yes
ac_cv_header_locale_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_host=i686-pc-linux-gnu
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_GMSGFMT=/usr/bin/gmsgfmt
ac_cv_path_GREP=/bin/grep
ac_cv_path_GSL_CONFIG=/usr/bin/gsl-config
ac_cv_path_GUILE=/usr/bin/guile
ac_cv_path_GUILE_CONFIG=/usr/bin/guile-config
ac_cv_path_GUILE_TOOLS=/usr/bin/guile-tools
ac_cv_path_MSGFMT=/usr/bin/msgfmt
ac_cv_path_PKG_CONFIG=/usr/bin/pkg-config
ac_cv_path_XGETTEXT=/usr/bin/xgettext
ac_cv_path_ac_pt_PKG_CONFIG=/usr/bin/pkg-config
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AR=i686-pc-linux-gnu-ar
ac_cv_prog_AWK=gawk
ac_cv_prog_CC=i686-pc-linux-gnu-gcc
ac_cv_prog_CPP='i686-pc-linux-gnu-gcc -E'
ac_cv_prog_CXX=i686-pc-linux-gnu-g++
ac_cv_prog_CXXCPP='i686-pc-linux-gnu-g++ -E'
ac_cv_prog_F77=i686-pc-linux-gnu-gfortran
ac_cv_prog_RANLIB=i686-pc-linux-gnu-ranlib
ac_cv_prog_STRIP=i686-pc-linux-gnu-strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_f77_g=yes
ac_cv_prog_make_make_set=yes
ac_cv_search_strerror='none required'
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_prog_cc_stdc=
am_cv_val_LC_MESSAGES=yes
gt_cv_func_dgettext_libc=yes
gt_cv_func_dgettext_libintl=no
gt_cv_func_ngettext_libc=yes
gt_cv_have_gettext=yes
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_reload_flag=-r
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/i686-pc-linux-gnu/bin/ld
lt_cv_path_LDCXX=/usr/i686-pc-linux-gnu/bin/ld
lt_cv_path_NM='/usr/bin/nm -B'
lt_cv_path_SED=/bin/sed
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_c_o_F77=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_gnu_ld=yes
lt_cv_prog_gnu_ldcxx=yes
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ 	]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ 	][ 	]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\) $/  {\"\1\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \([^ ]*\) \([^ ]*\)$/  {"\2", (lt_ptr) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^. .* \(.*\)$/extern int \1;/p'\'''
lt_cv_sys_max_cmd_len=98304
lt_lt_cv_prog_compiler_c_o='"yes"'
lt_lt_cv_prog_compiler_c_o_CXX='"yes"'
lt_lt_cv_prog_compiler_c_o_F77='"yes"'
lt_lt_cv_sys_global_symbol_pipe='"sed -n -e '\''s/^.*[ 	]\\([ABCDGIRSTW][ABCDGIRSTW]*\\)[ 	][ 	]*\\([_A-Za-z][_A-Za-z0-9]*\\)\$/\\1 \\2 \\2/p'\''"'
lt_lt_cv_sys_global_symbol_to_c_name_address='"sed -n -e '\''s/^: \\([^ ]*\\) \$/  {\\\"\\1\\\", (lt_ptr) 0},/p'\'' -e '\''s/^[BCDEGRST] \\([^ ]*\\) \\([^ ]*\\)\$/  {\"\\2\", (lt_ptr) \\&\\2},/p'\''"'
lt_lt_cv_sys_global_symbol_to_cdecl='"sed -n -e '\''s/^. .* \\(.*\\)\$/extern int \\1;/p'\''"'
pkg_cv_GNOME_CANVAS_CFLAGS='-I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12  '
pkg_cv_GNOME_CANVAS_LIBS='-lgnomecanvas-2 -lart_lgpl_2 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0  '
pkg_cv_GTK_CFLAGS='-I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12  '
pkg_cv_GTK_LIBS='-lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0  '

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL} /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/missing --run aclocal-1.10 -I macros'
ALL_LINGUAS='es es_ES'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL} /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/missing --run tar'
AR='i686-pc-linux-gnu-ar'
AUTOCONF='${SHELL} /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/missing --run autoconf'
AUTOHEADER='${SHELL} /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/missing --run autoheader'
AUTOMAKE='${SHELL} /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/missing --run automake-1.10'
AWK='gawk'
CATALOGS=''
CATOBJEXT='.gmo'
CC='i686-pc-linux-gnu-gcc'
CCDEPMODE='depmode=gcc3'
CFLAGS='-O2 -march=prescott -pipe -fomit-frame-pointer'
CLIPPER_CXXFLAGS='-I/usr/include'
CLIPPER_LIBS='-L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm'
COOT_GSL_FLAGS='-DHAVE_GSL'
COOT_USE_GUILE_FALSE='#'
COOT_USE_GUILE_TRUE=''
COOT_USE_PYTHON_FALSE='#'
COOT_USE_PYTHON_TRUE=''
COOT_WINDOWS_CFLAGS=''
CPP='i686-pc-linux-gnu-gcc -E'
CPPFLAGS=''
CXX='i686-pc-linux-gnu-g++'
CXXCPP='i686-pc-linux-gnu-g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS='-O2 -march=prescott -pipe -fomit-frame-pointer'
CYGPATH_W='echo'
DATADIRNAME='share'
DEFS='-DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1'
DEPDIR='.deps'
ECHO='echo'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
EXEEXT=''
F77='i686-pc-linux-gnu-gfortran'
FFLAGS='-O2 -march=prescott -pipe -fomit-frame-pointer'
GETTEXT_PACKAGE='coot'
GLIB_CFLAGS=''
GLIB_CONFIG=''
GLIB_LIBS=''
GLUT_CFLAGS=''
GLUT_LIBS='-lglut  -lXmu -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0  '
GMOFILES=' es.gmo es_ES.gmo'
GMSGFMT='/usr/bin/gmsgfmt'
GNOME_CANVAS_CFLAGS='-DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12  '
GNOME_CANVAS_LIBS='-lgnomecanvas-2 -lart_lgpl_2 -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0  '
GREP='/bin/grep'
GSL_CFLAGS='-I/usr/include'
GSL_CONFIG='/usr/bin/gsl-config'
GSL_LIBS='-L/usr/lib -lgsl -lgslcblas -lm'
GTKCANVAS_CFLAGS=''
GTKCANVAS_LIBS=''
GTKGLEXT_CFLAGS='-I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0  '
GTKGLEXT_LIBS='-Wl,--export-dynamic -lgtkglext-x11-1.0 -lgdkglext-x11-1.0 -lGLU -lGL -lXmu -lXt -lSM -lICE -lgtk-x11-2.0 -lpangox-1.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0  '
GTKGL_CFLAGS=''
GTKGL_LIBS=''
GTK_CFLAGS='-I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12  '
GTK_CONFIG=''
GTK_LIBS='-lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0  '
GUILE='/usr/bin/guile'
GUILE_CFLAGS=' '
GUILE_CONFIG='/usr/bin/guile-config'
GUILE_GTK_CFLAGS=''
GUILE_GTK_LIBS='-lguilegtk-2.0'
GUILE_LDFLAGS=' -lguile -lltdl  -lgmp -lcrypt -lm -lltdl'
GUILE_TOOLS='/usr/bin/guile-tools'
IMLIB_CFLAGS=''
IMLIB_CONFIG=''
IMLIB_LIBS=''
INSIDE_GNOME_COMMON_FALSE=''
INSIDE_GNOME_COMMON_TRUE='#'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
INSTOBJEXT='.mo'
INTLLIBS=''
LDFLAGS=''
LIBOBJS=''
LIBS=''
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LN_S='ln -s'
LTLIBOBJS=''
MAKEINFO='${SHELL} /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/missing --run makeinfo'
MKINSTALLDIRS='./mkinstalldirs'
MMDBSSM_CXXFLAGS='-DHAVE_SSMLIB -I/usr/include/ssm'
MMDBSSM_LIBS='-L/usr/lib -lssm'
MMDB_CXXFLAGS='-I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH'
MMDB_LIBS='-L/usr/lib -L/usr -lmmdb -lm'
MSGFMT='/usr/bin/msgfmt'
MSGFMT_OPTS='-c'
MYSQL_CFLAGS=''
MYSQL_LIBS=''
OBJEXT='o'
PACKAGE='coot'
PACKAGE_BUGREPORT=''
PACKAGE_NAME=''
PACKAGE_STRING=''
PACKAGE_TARNAME=''
PACKAGE_VERSION=''
PATH_SEPARATOR=':'
PKG_CONFIG='/usr/bin/pkg-config'
POFILES=' es.po es_ES.po'
POSUB='po'
PO_IN_DATADIR_FALSE=''
PO_IN_DATADIR_TRUE=''
PYTHON_CFLAGS='-DUSE_PYTHON -I/usr/include/python2.4'
PYTHON_LIBS='-L/usr/lib/python2.4/config -lpython2.4 -lutil'
RANLIB='i686-pc-linux-gnu-ranlib'
SED='/bin/sed'
SET_MAKE=''
SHELL='/bin/sh'
STRIP='i686-pc-linux-gnu-strip'
SWIG_FLAGS='-DCOOT_USE_GTK2_INTERFACE'
USE_GUILE_GTK='-DUSE_GUILE_GTK'
USE_NLS='yes'
VERSION='0.3.3'
XGETTEXT='/usr/bin/xgettext'
ac_ct_CC=''
ac_ct_CXX=''
ac_ct_F77=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build='i686-pc-linux-gnu'
build_alias='i686-pc-linux-gnu'
build_cpu='i686'
build_os='linux-gnu'
build_vendor='pc'
datadir='/usr/share'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE}'
dvidir='${docdir}'
exec_prefix='${prefix}'
host='i686-pc-linux-gnu'
host_alias='i686-pc-linux-gnu'
host_cpu='i686'
host_os='linux-gnu'
host_vendor='pc'
htmldir='${docdir}'
includedir='${prefix}/include/coot'
infodir='/usr/share/info'
install_sh='$(SHELL) /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='/var/lib'
mandir='/usr/share/man'
mkdir_p='/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='/usr'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
sysconfdir='/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

#define PACKAGE_NAME ""
#define PACKAGE_TARNAME ""
#define PACKAGE_VERSION ""
#define PACKAGE_STRING ""
#define PACKAGE_BUGREPORT ""
#define PACKAGE "coot"
#define VERSION "0.3.3"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define HAVE_LOCALE_H 1
#define HAVE_LC_MESSAGES 1
#define HAVE_BIND_TEXTDOMAIN_CODESET 1
#define HAVE_GETTEXT 1
#define HAVE_DCGETTEXT 1
#define ENABLE_NLS 1

configure: exit 0