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Gentoo's Bugzilla – Attachment 138744 Details for
Bug 202599
sci-chemistry/coot-0.3.3 doesn't compile with x11-libs/gtkglarea-1.99.0
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build.log
build.log (text/plain), 365.50 KB, created by
Justin Lecher (RETIRED)
on 2007-12-17 18:04:21 UTC
(
hide
)
Description:
build.log
Filename:
MIME Type:
Creator:
Justin Lecher (RETIRED)
Created:
2007-12-17 18:04:21 UTC
Size:
365.50 KB
patch
obsolete
>>>> Unpacking source... >>>> Unpacking coot-0.3.3.tar.gz to /var/tmp/portage/sci-chemistry/coot-0.3.3/work > [32;01m*[0m Applying 0.3.3-as-needed.patch ... >[A[183C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Applying 0.3.3-link-against-guile-gtk-properly.patch ... >[A[183C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running eautoreconf in '/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3' ... > [32;01m*[0m Running aclocal -I macros ... >[A[183C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running libtoolize --copy --force --automake ... >[A[183C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running aclocal -I macros ... >[A[183C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running autoconf ... >[A[183C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running automake --add-missing --copy ... >[A[183C [34;01m[ [32;01mok[34;01m ][0m > [32;01m*[0m Running elibtoolize in: coot-0.3.3 > [32;01m*[0m Applying install-sh-1.5.4.patch ... > [32;01m*[0m Applying sed-1.5.6.patch ... >>>> Source unpacked. >>>> Compiling source in /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3 ... > * econf: updating coot-0.3.3/config.sub with /usr/share/gnuconfig/config.sub > * econf: updating coot-0.3.3/config.guess with /usr/share/gnuconfig/config.guess >./configure --prefix=/usr --host=i686-pc-linux-gnu --mandir=/usr/share/man --infodir=/usr/share/info --datadir=/usr/share --sysconfdir=/etc --localstatedir=/var/lib --includedir=${prefix}/include/coot --with-gtkcanvas-prefix=/usr --with-clipper-prefix=/usr --with-mmdb-prefix=/usr --with-ssmlib-prefix=/usr --with-guile=/usr --with-python=/usr --with-guile-gtk --with-gtk2 --build=i686-pc-linux-gnu >checking for a BSD-compatible install... /usr/bin/install -c >checking whether build environment is sane... yes >checking for a thread-safe mkdir -p... /bin/mkdir -p >checking for gawk... gawk >checking whether make sets $(MAKE)... yes >checking for style of include used by make... GNU >checking for i686-pc-linux-gnu-gcc... i686-pc-linux-gnu-gcc >checking for C compiler default output file name... a.out >checking whether the C compiler works... yes >checking whether we are cross compiling... no >checking for suffix of executables... >checking for suffix of object files... o >checking whether we are using the GNU C compiler... yes >checking whether i686-pc-linux-gnu-gcc accepts -g... yes >checking for i686-pc-linux-gnu-gcc option to accept ISO C89... none needed >checking dependency style of i686-pc-linux-gnu-gcc... gcc3 >checking for library containing strerror... none required >checking for i686-pc-linux-gnu-gcc... (cached) i686-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... (cached) yes >checking whether i686-pc-linux-gnu-gcc accepts -g... (cached) yes >checking for i686-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed >checking dependency style of i686-pc-linux-gnu-gcc... (cached) gcc3 >checking for i686-pc-linux-gnu-gcc... (cached) i686-pc-linux-gnu-gcc >checking whether we are using the GNU C compiler... (cached) yes >checking whether i686-pc-linux-gnu-gcc accepts -g... (cached) yes >checking for i686-pc-linux-gnu-gcc option to accept ISO C89... (cached) none needed >checking dependency style of i686-pc-linux-gnu-gcc... (cached) gcc3 >checking how to run the C preprocessor... i686-pc-linux-gnu-gcc -E >checking for grep that handles long lines and -e... /bin/grep >checking for egrep... /bin/grep -E >checking for ANSI C header files... yes >checking for i686-pc-linux-gnu-g++... i686-pc-linux-gnu-g++ >checking whether we are using the GNU C++ compiler... yes >checking whether i686-pc-linux-gnu-g++ accepts -g... yes >checking dependency style of i686-pc-linux-gnu-g++... gcc3 >checking build system type... i686-pc-linux-gnu >checking host system type... i686-pc-linux-gnu >checking for a sed that does not truncate output... /bin/sed >checking for ld used by i686-pc-linux-gnu-gcc... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking for /usr/i686-pc-linux-gnu/bin/ld option to reload object files... -r >checking for BSD-compatible nm... /usr/bin/nm -B >checking whether ln -s works... yes >checking how to recognize dependent libraries... pass_all >checking for sys/types.h... yes >checking for sys/stat.h... yes >checking for stdlib.h... yes >checking for string.h... yes >checking for memory.h... yes >checking for strings.h... yes >checking for inttypes.h... yes >checking for stdint.h... yes >checking for unistd.h... yes >checking dlfcn.h usability... yes >checking dlfcn.h presence... yes >checking for dlfcn.h... yes >checking how to run the C++ preprocessor... i686-pc-linux-gnu-g++ -E >checking for i686-pc-linux-gnu-g77... no >checking for i686-pc-linux-gnu-xlf... no >checking for i686-pc-linux-gnu-f77... no >checking for i686-pc-linux-gnu-frt... no >checking for i686-pc-linux-gnu-pgf77... no >checking for i686-pc-linux-gnu-cf77... no >checking for i686-pc-linux-gnu-fort77... no >checking for i686-pc-linux-gnu-fl32... no >checking for i686-pc-linux-gnu-af77... no >checking for i686-pc-linux-gnu-xlf90... no >checking for i686-pc-linux-gnu-f90... no >checking for i686-pc-linux-gnu-pgf90... no >checking for i686-pc-linux-gnu-pghpf... no >checking for i686-pc-linux-gnu-epcf90... no >checking for i686-pc-linux-gnu-gfortran... i686-pc-linux-gnu-gfortran >checking whether we are using the GNU Fortran 77 compiler... yes >checking whether i686-pc-linux-gnu-gfortran accepts -g... yes >checking the maximum length of command line arguments... 98304 >checking command to parse /usr/bin/nm -B output from i686-pc-linux-gnu-gcc object... ok >checking for objdir... .libs >checking for i686-pc-linux-gnu-ar... i686-pc-linux-gnu-ar >checking for i686-pc-linux-gnu-ranlib... i686-pc-linux-gnu-ranlib >checking for i686-pc-linux-gnu-strip... i686-pc-linux-gnu-strip >checking for correct ltmain.sh version... yes >checking if i686-pc-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no >checking for i686-pc-linux-gnu-gcc option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-gcc PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-gcc static flag -static works... yes >checking if i686-pc-linux-gnu-gcc supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-gcc linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking whether -lc should be explicitly linked in... no >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking whether stripping libraries is possible... yes >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >configure: creating libtool >appending configuration tag "CXX" to libtool >checking for ld used by i686-pc-linux-gnu-g++... /usr/i686-pc-linux-gnu/bin/ld >checking if the linker (/usr/i686-pc-linux-gnu/bin/ld) is GNU ld... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking for i686-pc-linux-gnu-g++ option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-g++ PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-g++ static flag -static works... yes >checking if i686-pc-linux-gnu-g++ supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-g++ linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >appending configuration tag "F77" to libtool >checking if libtool supports shared libraries... yes >checking whether to build shared libraries... yes >checking whether to build static libraries... yes >checking for i686-pc-linux-gnu-gfortran option to produce PIC... -fPIC >checking if i686-pc-linux-gnu-gfortran PIC flag -fPIC works... yes >checking if i686-pc-linux-gnu-gfortran static flag -static works... yes >checking if i686-pc-linux-gnu-gfortran supports -c -o file.o... yes >checking whether the i686-pc-linux-gnu-gfortran linker (/usr/i686-pc-linux-gnu/bin/ld) supports shared libraries... yes >checking dynamic linker characteristics... GNU/Linux ld.so >checking how to hardcode library paths into programs... immediate >checking for i686-pc-linux-gnu-ranlib... (cached) i686-pc-linux-gnu-ranlib >checking if this is MINGW on Windows... no >checking for gsl-config... /usr/bin/gsl-config >checking for GSL - version >= 1.3... yes >checking for i686-pc-linux-gnu-pkg-config... no >checking for pkg-config... /usr/bin/pkg-config >checking pkg-config is at least version 0.9.0... yes >checking for GTK... yes >checking for GNOME_CANVAS... yes >checking for pkg-config... /usr/bin/pkg-config >checking for GtkGLExt - version >= 1.0.0... yes (version 1.2.0) >checking for GLUT... yes >checking for MMDB... yes >checking for SSMLib... /usr >checking for Clipper... yes >Congratulations, you are using Guile >checking for guile... /usr/bin/guile >checking for guile-config... /usr/bin/guile-config >checking for guile-tools... /usr/bin/guile-tools >checking libguile compile flags... >checking libguile link flags... -lguile -lltdl -lgmp -lcrypt -lm -lltdl >checking for Python... yes >Cool, using Python >checking for guile-gtk... >Not using database >checking locale.h usability... yes >checking locale.h presence... yes >checking for locale.h... yes >checking for LC_MESSAGES... yes >checking libintl.h usability... yes >checking libintl.h presence... yes >checking for libintl.h... yes >checking for ngettext in libc... yes >checking for dgettext in libc... yes >checking for bind_textdomain_codeset... yes >checking for msgfmt... /usr/bin/msgfmt >checking for dcgettext... yes >checking if msgfmt accepts -c... yes >checking for gmsgfmt... /usr/bin/gmsgfmt >checking for xgettext... /usr/bin/xgettext >checking for catalogs to be installed... >./configure: line 26222: ./po/POTFILES.in: No such file or directory >configure: creating ./config.status >config.status: creating Makefile >config.status: creating macros/Makefile >config.status: creating scheme/Makefile >config.status: creating python/Makefile >config.status: creating compat/Makefile >config.status: creating coot-utils/Makefile >config.status: creating ccp4mg-utils/Makefile >config.status: creating coords/Makefile >config.status: creating db-main/Makefile >config.status: creating density-contour/Makefile >config.status: creating surface/Makefile >config.status: creating coot-surface/Makefile >config.status: creating angles/Makefile >config.status: creating atom-utils/Makefile >config.status: creating mini-mol/Makefile >config.status: creating skeleton/Makefile >config.status: creating ligand/Makefile >config.status: creating geometry/Makefile >config.status: creating ideal/Makefile >config.status: creating build/Makefile >config.status: creating analysis/Makefile >config.status: creating sequence-view/Makefile >config.status: creating src/Makefile >config.status: creating doc/Makefile >config.status: creating high-res/Makefile >config.status: creating tw/Makefile >config.status: creating setup/coot.sh >config.status: creating setup/coot.csh >config.status: creating python/coot_load_modules.py >config.status: creating auxil/Makefile >config.status: creating auxil/catcheck/Makefile >config.status: creating auxil/rama/Makefile >config.status: creating auxil/sec-str/Makefile >config.status: creating auxil/strand-analysis/Makefile >config.status: creating auxil/vectors/Makefile >config.status: executing depfiles commands >config.status: executing default-1 commands >/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/src /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3 >swig -o coot_wrap_python_pre.cc -DCOOT_USE_GTK2_INTERFACE -I../src -shadow -python -c++ ../src/coot.i >cp coot_wrap_python_pre.cc coot_wrap_python.cc >swig -o coot_wrap_guile_pre.cc -DCOOT_USE_GTK2_INTERFACE "-DUSE_GUILE" -I../src -guile -c++ ../src/coot.i >sh ../src/post-process-coot-wrap-guile.sh `/usr/bin/guile-config --version 2>&1 | awk '{print $NF}'` coot_wrap_guile_pre.cc coot_wrap_guile.cc >sed -e s/SCM_STRING_CHARS/scm_to_locale_string/ coot_wrap_guile_pre.cc coot_wrap_guile.cc >/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3 >Making all in auxil >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/auxil' >Making all in catcheck >make[2]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/auxil/catcheck' >make[2]: Nothing to be done for `all'. >make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/auxil/catcheck' >Making all in rama >make[2]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/auxil/rama' >make[2]: Nothing to be done for `all'. >make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/auxil/rama' >Making all in sec-str >make[2]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/auxil/sec-str' >make[2]: Nothing to be done for `all'. >make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/auxil/sec-str' >Making all in strand-analysis >make[2]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/auxil/strand-analysis' >make[2]: Nothing to be done for `all'. >make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/auxil/strand-analysis' >Making all in vectors >make[2]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/auxil/vectors' >make[2]: Nothing to be done for `all'. >make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/auxil/vectors' >make[2]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/auxil' >make[2]: Nothing to be done for `all-am'. >make[2]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/auxil' >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/auxil' >Making all in scheme >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/scheme' >make[1]: Nothing to be done for `all'. >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/scheme' >Making all in python >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/python' >make[1]: Nothing to be done for `all'. >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/python' >Making all in macros >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/macros' >make[1]: Nothing to be done for `all'. >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/macros' >Making all in compat >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/compat' >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -O2 -march=prescott -pipe -fomit-frame-pointer -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c -o getopt.lo getopt.c >mkdir .libs > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -O2 -march=prescott -pipe -fomit-frame-pointer -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c getopt.c -fPIC -DPIC -o .libs/getopt.o > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -O2 -march=prescott -pipe -fomit-frame-pointer -MT getopt.lo -MD -MP -MF .deps/getopt.Tpo -c getopt.c -o getopt.o >/dev/null 2>&1 >mv -f .deps/getopt.Tpo .deps/getopt.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -O2 -march=prescott -pipe -fomit-frame-pointer -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c -o getopt1.lo getopt1.c > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -O2 -march=prescott -pipe -fomit-frame-pointer -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c getopt1.c -fPIC -DPIC -o .libs/getopt1.o > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -O2 -march=prescott -pipe -fomit-frame-pointer -MT getopt1.lo -MD -MP -MF .deps/getopt1.Tpo -c getopt1.c -o getopt1.o >/dev/null 2>&1 >mv -f .deps/getopt1.Tpo .deps/getopt1.Plo >/bin/sh ../libtool --tag=CC --mode=link i686-pc-linux-gnu-gcc -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-compat.la -rpath /usr/lib getopt.lo getopt1.lo >i686-pc-linux-gnu-gcc -shared .libs/getopt.o .libs/getopt1.o -march=prescott -Wl,-soname -Wl,libcoot-compat.so.0 -o .libs/libcoot-compat.so.0.0.0 >(cd .libs && rm -f libcoot-compat.so.0 && ln -s libcoot-compat.so.0.0.0 libcoot-compat.so.0) >(cd .libs && rm -f libcoot-compat.so && ln -s libcoot-compat.so.0.0.0 libcoot-compat.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-compat.a getopt.o getopt1.o >i686-pc-linux-gnu-ranlib .libs/libcoot-compat.a >creating libcoot-compat.la >(cd .libs && rm -f libcoot-compat.la && ln -s ../libcoot-compat.la libcoot-compat.la) >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/compat' >Making all in coot-utils >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c -o coot-utils.lo coot-utils.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c coot-utils.cc -fPIC -DPIC -o .libs/coot-utils.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-utils.lo -MD -MP -MF .deps/coot-utils.Tpo -c coot-utils.cc -o coot-utils.o >/dev/null 2>&1 >mv -f .deps/coot-utils.Tpo .deps/coot-utils.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c -o coot-fasta.lo coot-fasta.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c coot-fasta.cc -fPIC -DPIC -o .libs/coot-fasta.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-fasta.lo -MD -MP -MF .deps/coot-fasta.Tpo -c coot-fasta.cc -o coot-fasta.o >/dev/null 2>&1 >mv -f .deps/coot-fasta.Tpo .deps/coot-fasta.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c -o atomic-numbers.lo atomic-numbers.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c atomic-numbers.cc -fPIC -DPIC -o .libs/atomic-numbers.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT atomic-numbers.lo -MD -MP -MF .deps/atomic-numbers.Tpo -c atomic-numbers.cc -o atomic-numbers.o >/dev/null 2>&1 >mv -f .deps/atomic-numbers.Tpo .deps/atomic-numbers.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-utils.la -rpath /usr/lib coot-utils.lo coot-fasta.lo atomic-numbers.lo >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/coot-utils.o .libs/coot-fasta.o .libs/atomic-numbers.o -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-utils.so.0 -o .libs/libcoot-utils.so.0.0.0 >(cd .libs && rm -f libcoot-utils.so.0 && ln -s libcoot-utils.so.0.0.0 libcoot-utils.so.0) >(cd .libs && rm -f libcoot-utils.so && ln -s libcoot-utils.so.0.0.0 libcoot-utils.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-utils.a coot-utils.o coot-fasta.o atomic-numbers.o >i686-pc-linux-gnu-ranlib .libs/libcoot-utils.a >creating libcoot-utils.la >(cd .libs && rm -f libcoot-utils.la && ln -s ../libcoot-utils.la libcoot-utils.la) >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-map-utils.lo -MD -MP -MF .deps/coot-map-utils.Tpo -c -o coot-map-utils.lo coot-map-utils.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-map-utils.lo -MD -MP -MF .deps/coot-map-utils.Tpo -c coot-map-utils.cc -fPIC -DPIC -o .libs/coot-map-utils.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-map-utils.lo -MD -MP -MF .deps/coot-map-utils.Tpo -c coot-map-utils.cc -o coot-map-utils.o >/dev/null 2>&1 >mv -f .deps/coot-map-utils.Tpo .deps/coot-map-utils.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT peak-search.lo -MD -MP -MF .deps/peak-search.Tpo -c -o peak-search.lo peak-search.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT peak-search.lo -MD -MP -MF .deps/peak-search.Tpo -c peak-search.cc -fPIC -DPIC -o .libs/peak-search.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT peak-search.lo -MD -MP -MF .deps/peak-search.Tpo -c peak-search.cc -o peak-search.o >/dev/null 2>&1 >mv -f .deps/peak-search.Tpo .deps/peak-search.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT trim.lo -MD -MP -MF .deps/trim.Tpo -c -o trim.lo trim.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT trim.lo -MD -MP -MF .deps/trim.Tpo -c trim.cc -fPIC -DPIC -o .libs/trim.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT trim.lo -MD -MP -MF .deps/trim.Tpo -c trim.cc -o trim.o >/dev/null 2>&1 >mv -f .deps/trim.Tpo .deps/trim.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-map-utils.la -rpath /usr/lib coot-map-utils.lo peak-search.lo trim.lo >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/coot-map-utils.o .libs/peak-search.o .libs/trim.o -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-map-utils.so.0 -o .libs/libcoot-map-utils.so.0.0.0 >(cd .libs && rm -f libcoot-map-utils.so.0 && ln -s libcoot-map-utils.so.0.0.0 libcoot-map-utils.so.0) >(cd .libs && rm -f libcoot-map-utils.so && ln -s libcoot-map-utils.so.0.0.0 libcoot-map-utils.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-map-utils.a coot-map-utils.o peak-search.o trim.o >i686-pc-linux-gnu-ranlib .libs/libcoot-map-utils.a >creating libcoot-map-utils.la >(cd .libs && rm -f libcoot-map-utils.la && ln -s ../libcoot-map-utils.la libcoot-map-utils.la) >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-coord-utils.lo -MD -MP -MF .deps/coot-coord-utils.Tpo -c -o coot-coord-utils.lo coot-coord-utils.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-coord-utils.lo -MD -MP -MF .deps/coot-coord-utils.Tpo -c coot-coord-utils.cc -fPIC -DPIC -o .libs/coot-coord-utils.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-coord-utils.lo -MD -MP -MF .deps/coot-coord-utils.Tpo -c coot-coord-utils.cc -o coot-coord-utils.o >/dev/null 2>&1 >mv -f .deps/coot-coord-utils.Tpo .deps/coot-coord-utils.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-coord-utils.la -rpath /usr/lib coot-coord-utils.lo -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm libcoot-utils.la >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/coot-coord-utils.o -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs -L/usr/lib /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so -lccp4c -L/usr -lmmdb -lrfftw -lfftw -lz ./.libs/libcoot-utils.so -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-coord-utils.so.0 -o .libs/libcoot-coord-utils.so.0.0.0 >(cd .libs && rm -f libcoot-coord-utils.so.0 && ln -s libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so.0) >(cd .libs && rm -f libcoot-coord-utils.so && ln -s libcoot-coord-utils.so.0.0.0 libcoot-coord-utils.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-coord-utils.a coot-coord-utils.o >i686-pc-linux-gnu-ranlib .libs/libcoot-coord-utils.a >creating libcoot-coord-utils.la >(cd .libs && rm -f libcoot-coord-utils.la && ln -s ../libcoot-coord-utils.la libcoot-coord-utils.la) >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-coord-extras.lo -MD -MP -MF .deps/coot-coord-extras.Tpo -c -o coot-coord-extras.lo coot-coord-extras.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-coord-extras.lo -MD -MP -MF .deps/coot-coord-extras.Tpo -c coot-coord-extras.cc -fPIC -DPIC -o .libs/coot-coord-extras.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-coord-extras.lo -MD -MP -MF .deps/coot-coord-extras.Tpo -c coot-coord-extras.cc -o coot-coord-extras.o >/dev/null 2>&1 >mv -f .deps/coot-coord-extras.Tpo .deps/coot-coord-extras.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-coord-lsq.lo -MD -MP -MF .deps/coot-coord-lsq.Tpo -c -o coot-coord-lsq.lo coot-coord-lsq.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-coord-lsq.lo -MD -MP -MF .deps/coot-coord-lsq.Tpo -c coot-coord-lsq.cc -fPIC -DPIC -o .libs/coot-coord-lsq.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-coord-lsq.lo -MD -MP -MF .deps/coot-coord-lsq.Tpo -c coot-coord-lsq.cc -o coot-coord-lsq.o >/dev/null 2>&1 >mv -f .deps/coot-coord-lsq.Tpo .deps/coot-coord-lsq.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-coord-extras.la -rpath /usr/lib coot-coord-extras.lo coot-coord-lsq.lo >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/coot-coord-extras.o .libs/coot-coord-lsq.o -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-coord-extras.so.0 -o .libs/libcoot-coord-extras.so.0.0.0 >(cd .libs && rm -f libcoot-coord-extras.so.0 && ln -s libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so.0) >(cd .libs && rm -f libcoot-coord-extras.so && ln -s libcoot-coord-extras.so.0.0.0 libcoot-coord-extras.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-coord-extras.a coot-coord-extras.o coot-coord-lsq.o >i686-pc-linux-gnu-ranlib .libs/libcoot-coord-extras.a >creating libcoot-coord-extras.la >(cd .libs && rm -f libcoot-coord-extras.la && ln -s ../libcoot-coord-extras.la libcoot-coord-extras.la) >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-map-heavy.lo -MD -MP -MF .deps/coot-map-heavy.Tpo -c -o coot-map-heavy.lo coot-map-heavy.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-map-heavy.lo -MD -MP -MF .deps/coot-map-heavy.Tpo -c coot-map-heavy.cc -fPIC -DPIC -o .libs/coot-map-heavy.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-map-heavy.lo -MD -MP -MF .deps/coot-map-heavy.Tpo -c coot-map-heavy.cc -o coot-map-heavy.o >/dev/null 2>&1 >mv -f .deps/coot-map-heavy.Tpo .deps/coot-map-heavy.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-fffear.lo -MD -MP -MF .deps/coot-fffear.Tpo -c -o coot-fffear.lo coot-fffear.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-fffear.lo -MD -MP -MF .deps/coot-fffear.Tpo -c coot-fffear.cc -fPIC -DPIC -o .libs/coot-fffear.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-fffear.lo -MD -MP -MF .deps/coot-fffear.Tpo -c coot-fffear.cc -o coot-fffear.o >/dev/null 2>&1 >mv -f .deps/coot-fffear.Tpo .deps/coot-fffear.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-map-heavy.la -rpath /usr/lib coot-map-heavy.lo coot-fffear.lo -L/usr/lib -lgsl -lgslcblas -lm >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/coot-map-heavy.o .libs/coot-fffear.o -L/usr/lib /usr/lib/libgsl.so /usr/lib/libgslcblas.so -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-map-heavy.so.0 -o .libs/libcoot-map-heavy.so.0.0.0 >(cd .libs && rm -f libcoot-map-heavy.so.0 && ln -s libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so.0) >(cd .libs && rm -f libcoot-map-heavy.so && ln -s libcoot-map-heavy.so.0.0.0 libcoot-map-heavy.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-map-heavy.a coot-map-heavy.o coot-fffear.o >i686-pc-linux-gnu-ranlib .libs/libcoot-map-heavy.a >creating libcoot-map-heavy.la >(cd .libs && rm -f libcoot-map-heavy.la && ln -s ../libcoot-map-heavy.la libcoot-map-heavy.la) >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-shelx-ins.lo -MD -MP -MF .deps/coot-shelx-ins.Tpo -c -o coot-shelx-ins.lo coot-shelx-ins.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-shelx-ins.lo -MD -MP -MF .deps/coot-shelx-ins.Tpo -c coot-shelx-ins.cc -fPIC -DPIC -o .libs/coot-shelx-ins.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-shelx-ins.lo -MD -MP -MF .deps/coot-shelx-ins.Tpo -c coot-shelx-ins.cc -o coot-shelx-ins.o >/dev/null 2>&1 >mv -f .deps/coot-shelx-ins.Tpo .deps/coot-shelx-ins.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-shelx.la -rpath /usr/lib coot-shelx-ins.lo -L/usr/lib -L/usr -lmmdb -lm libcoot-coord-utils.la >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/coot-shelx-ins.o -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs -L/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs -L/usr/lib -L/usr -lmmdb ./.libs/libcoot-coord-utils.so -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-shelx.so.0 -o .libs/libcoot-shelx.so.0.0.0 >(cd .libs && rm -f libcoot-shelx.so.0 && ln -s libcoot-shelx.so.0.0.0 libcoot-shelx.so.0) >(cd .libs && rm -f libcoot-shelx.so && ln -s libcoot-shelx.so.0.0.0 libcoot-shelx.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-shelx.a coot-shelx-ins.o >i686-pc-linux-gnu-ranlib .libs/libcoot-shelx.a >creating libcoot-shelx.la >(cd .libs && rm -f libcoot-shelx.la && ln -s ../libcoot-shelx.la libcoot-shelx.la) >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT test-shelx-reader.o -MD -MP -MF .deps/test-shelx-reader.Tpo -c -o test-shelx-reader.o test-shelx-reader.cc >mv -f .deps/test-shelx-reader.Tpo .deps/test-shelx-reader.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o testshelxreader test-shelx-reader.o ./libcoot-shelx.la ./libcoot-utils.la >i686-pc-linux-gnu-g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/testshelxreader test-shelx-reader.o ./.libs/libcoot-shelx.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lmmdb -lrfftw -lfftw -lz /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so ./.libs/libcoot-utils.so >creating testshelxreader >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT test-utils.o -MD -MP -MF .deps/test-utils.Tpo -c -o test-utils.o test-utils.cc >mv -f .deps/test-utils.Tpo .deps/test-utils.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o testcootutils test-utils.o ./libcoot-shelx.la ./libcoot-coord-utils.la ./libcoot-utils.la -L/usr/lib -L/usr -lmmdb -lm >i686-pc-linux-gnu-g++ -DHAVE_GSL -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/testcootutils test-utils.o ./.libs/libcoot-shelx.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so ./.libs/libcoot-coord-utils.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lrfftw -lfftw -lz /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so ./.libs/libcoot-utils.so -lmmdb -lm >creating testcootutils >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils' >Making all in surface >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/surface' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSphereElement.lo -MD -MP -MF .deps/CXXSphereElement.Tpo -c -o CXXSphereElement.lo CXXSphereElement.cpp >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSphereElement.lo -MD -MP -MF .deps/CXXSphereElement.Tpo -c CXXSphereElement.cpp -fPIC -DPIC -o .libs/CXXSphereElement.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSphereElement.lo -MD -MP -MF .deps/CXXSphereElement.Tpo -c CXXSphereElement.cpp -o CXXSphereElement.o >/dev/null 2>&1 >mv -f .deps/CXXSphereElement.Tpo .deps/CXXSphereElement.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXChargeTable.lo -MD -MP -MF .deps/CXXChargeTable.Tpo -c -o CXXChargeTable.lo CXXChargeTable.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXChargeTable.lo -MD -MP -MF .deps/CXXChargeTable.Tpo -c CXXChargeTable.cpp -fPIC -DPIC -o .libs/CXXChargeTable.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXChargeTable.lo -MD -MP -MF .deps/CXXChargeTable.Tpo -c CXXChargeTable.cpp -o CXXChargeTable.o >/dev/null 2>&1 >mv -f .deps/CXXChargeTable.Tpo .deps/CXXChargeTable.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSphereNode.lo -MD -MP -MF .deps/CXXSphereNode.Tpo -c -o CXXSphereNode.lo CXXSphereNode.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSphereNode.lo -MD -MP -MF .deps/CXXSphereNode.Tpo -c CXXSphereNode.cpp -fPIC -DPIC -o .libs/CXXSphereNode.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSphereNode.lo -MD -MP -MF .deps/CXXSphereNode.Tpo -c CXXSphereNode.cpp -o CXXSphereNode.o >/dev/null 2>&1 >mv -f .deps/CXXSphereNode.Tpo .deps/CXXSphereNode.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXCircle.lo -MD -MP -MF .deps/CXXCircle.Tpo -c -o CXXCircle.lo CXXCircle.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXCircle.lo -MD -MP -MF .deps/CXXCircle.Tpo -c CXXCircle.cpp -fPIC -DPIC -o .libs/CXXCircle.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXCircle.lo -MD -MP -MF .deps/CXXCircle.Tpo -c CXXCircle.cpp -o CXXCircle.o >/dev/null 2>&1 >mv -f .deps/CXXCircle.Tpo .deps/CXXCircle.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSphereTriangle.lo -MD -MP -MF .deps/CXXSphereTriangle.Tpo -c -o CXXSphereTriangle.lo CXXSphereTriangle.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSphereTriangle.lo -MD -MP -MF .deps/CXXSphereTriangle.Tpo -c CXXSphereTriangle.cpp -fPIC -DPIC -o .libs/CXXSphereTriangle.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSphereTriangle.lo -MD -MP -MF .deps/CXXSphereTriangle.Tpo -c CXXSphereTriangle.cpp -o CXXSphereTriangle.o >/dev/null 2>&1 >mv -f .deps/CXXSphereTriangle.Tpo .deps/CXXSphereTriangle.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXCircleNode.lo -MD -MP -MF .deps/CXXCircleNode.Tpo -c -o CXXCircleNode.lo CXXCircleNode.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXCircleNode.lo -MD -MP -MF .deps/CXXCircleNode.Tpo -c CXXCircleNode.cpp -fPIC -DPIC -o .libs/CXXCircleNode.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXCircleNode.lo -MD -MP -MF .deps/CXXCircleNode.Tpo -c CXXCircleNode.cpp -o CXXCircleNode.o >/dev/null 2>&1 >mv -f .deps/CXXCircleNode.Tpo .deps/CXXCircleNode.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSphereTriangleEdge.lo -MD -MP -MF .deps/CXXSphereTriangleEdge.Tpo -c -o CXXSphereTriangleEdge.lo CXXSphereTriangleEdge.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSphereTriangleEdge.lo -MD -MP -MF .deps/CXXSphereTriangleEdge.Tpo -c CXXSphereTriangleEdge.cpp -fPIC -DPIC -o .libs/CXXSphereTriangleEdge.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSphereTriangleEdge.lo -MD -MP -MF .deps/CXXSphereTriangleEdge.Tpo -c CXXSphereTriangleEdge.cpp -o CXXSphereTriangleEdge.o >/dev/null 2>&1 >mv -f .deps/CXXSphereTriangleEdge.Tpo .deps/CXXSphereTriangleEdge.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXCoord.lo -MD -MP -MF .deps/CXXCoord.Tpo -c -o CXXCoord.lo CXXCoord.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXCoord.lo -MD -MP -MF .deps/CXXCoord.Tpo -c CXXCoord.cpp -fPIC -DPIC -o .libs/CXXCoord.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXCoord.lo -MD -MP -MF .deps/CXXCoord.Tpo -c CXXCoord.cpp -o CXXCoord.o >/dev/null 2>&1 >mv -f .deps/CXXCoord.Tpo .deps/CXXCoord.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSurface.lo -MD -MP -MF .deps/CXXSurface.Tpo -c -o CXXSurface.lo CXXSurface.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSurface.lo -MD -MP -MF .deps/CXXSurface.Tpo -c CXXSurface.cpp -fPIC -DPIC -o .libs/CXXSurface.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSurface.lo -MD -MP -MF .deps/CXXSurface.Tpo -c CXXSurface.cpp -o CXXSurface.o >/dev/null 2>&1 >mv -f .deps/CXXSurface.Tpo .deps/CXXSurface.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXCreator.lo -MD -MP -MF .deps/CXXCreator.Tpo -c -o CXXCreator.lo CXXCreator.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXCreator.lo -MD -MP -MF .deps/CXXCreator.Tpo -c CXXCreator.cpp -fPIC -DPIC -o .libs/CXXCreator.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXCreator.lo -MD -MP -MF .deps/CXXCreator.Tpo -c CXXCreator.cpp -o CXXCreator.o >/dev/null 2>&1 >mv -f .deps/CXXCreator.Tpo .deps/CXXCreator.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSurfaceVertex.lo -MD -MP -MF .deps/CXXSurfaceVertex.Tpo -c -o CXXSurfaceVertex.lo CXXSurfaceVertex.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSurfaceVertex.lo -MD -MP -MF .deps/CXXSurfaceVertex.Tpo -c CXXSurfaceVertex.cpp -fPIC -DPIC -o .libs/CXXSurfaceVertex.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSurfaceVertex.lo -MD -MP -MF .deps/CXXSurfaceVertex.Tpo -c CXXSurfaceVertex.cpp -o CXXSurfaceVertex.o >/dev/null 2>&1 >mv -f .deps/CXXSurfaceVertex.Tpo .deps/CXXSurfaceVertex.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXException.lo -MD -MP -MF .deps/CXXException.Tpo -c -o CXXException.lo CXXException.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXException.lo -MD -MP -MF .deps/CXXException.Tpo -c CXXException.cpp -fPIC -DPIC -o .libs/CXXException.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXException.lo -MD -MP -MF .deps/CXXException.Tpo -c CXXException.cpp -o CXXException.o >/dev/null 2>&1 >mv -f .deps/CXXException.Tpo .deps/CXXException.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXTorusElement.lo -MD -MP -MF .deps/CXXTorusElement.Tpo -c -o CXXTorusElement.lo CXXTorusElement.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXTorusElement.lo -MD -MP -MF .deps/CXXTorusElement.Tpo -c CXXTorusElement.cpp -fPIC -DPIC -o .libs/CXXTorusElement.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXTorusElement.lo -MD -MP -MF .deps/CXXTorusElement.Tpo -c CXXTorusElement.cpp -o CXXTorusElement.o >/dev/null 2>&1 >mv -f .deps/CXXTorusElement.Tpo .deps/CXXTorusElement.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXFFTSolventMap.lo -MD -MP -MF .deps/CXXFFTSolventMap.Tpo -c -o CXXFFTSolventMap.lo CXXFFTSolventMap.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXFFTSolventMap.lo -MD -MP -MF .deps/CXXFFTSolventMap.Tpo -c CXXFFTSolventMap.cpp -fPIC -DPIC -o .libs/CXXFFTSolventMap.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXFFTSolventMap.lo -MD -MP -MF .deps/CXXFFTSolventMap.Tpo -c CXXFFTSolventMap.cpp -o CXXFFTSolventMap.o >/dev/null 2>&1 >mv -f .deps/CXXFFTSolventMap.Tpo .deps/CXXFFTSolventMap.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXTorusNode.lo -MD -MP -MF .deps/CXXTorusNode.Tpo -c -o CXXTorusNode.lo CXXTorusNode.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXTorusNode.lo -MD -MP -MF .deps/CXXTorusNode.Tpo -c CXXTorusNode.cpp -fPIC -DPIC -o .libs/CXXTorusNode.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXTorusNode.lo -MD -MP -MF .deps/CXXTorusNode.Tpo -c CXXTorusNode.cpp -o CXXTorusNode.o >/dev/null 2>&1 >mv -f .deps/CXXTorusNode.Tpo .deps/CXXTorusNode.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXFortranFile.lo -MD -MP -MF .deps/CXXFortranFile.Tpo -c -o CXXFortranFile.lo CXXFortranFile.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXFortranFile.lo -MD -MP -MF .deps/CXXFortranFile.Tpo -c CXXFortranFile.cpp -fPIC -DPIC -o .libs/CXXFortranFile.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXFortranFile.lo -MD -MP -MF .deps/CXXFortranFile.Tpo -c CXXFortranFile.cpp -o CXXFortranFile.o >/dev/null 2>&1 >mv -f .deps/CXXFortranFile.Tpo .deps/CXXFortranFile.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXNewHood.lo -MD -MP -MF .deps/CXXNewHood.Tpo -c -o CXXNewHood.lo CXXNewHood.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXNewHood.lo -MD -MP -MF .deps/CXXNewHood.Tpo -c CXXNewHood.cpp -fPIC -DPIC -o .libs/CXXNewHood.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXNewHood.lo -MD -MP -MF .deps/CXXNewHood.Tpo -c CXXNewHood.cpp -o CXXNewHood.o >/dev/null 2>&1 >mv -f .deps/CXXNewHood.Tpo .deps/CXXNewHood.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXTriangle.lo -MD -MP -MF .deps/CXXTriangle.Tpo -c -o CXXTriangle.lo CXXTriangle.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXTriangle.lo -MD -MP -MF .deps/CXXTriangle.Tpo -c CXXTriangle.cpp -fPIC -DPIC -o .libs/CXXTriangle.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXTriangle.lo -MD -MP -MF .deps/CXXTriangle.Tpo -c CXXTriangle.cpp -o CXXTriangle.o >/dev/null 2>&1 >mv -f .deps/CXXTriangle.Tpo .deps/CXXTriangle.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXNode.lo -MD -MP -MF .deps/CXXNode.Tpo -c -o CXXNode.lo CXXNode.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXNode.lo -MD -MP -MF .deps/CXXNode.Tpo -c CXXNode.cpp -fPIC -DPIC -o .libs/CXXNode.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXNode.lo -MD -MP -MF .deps/CXXNode.Tpo -c CXXNode.cpp -o CXXNode.o >/dev/null 2>&1 >mv -f .deps/CXXNode.Tpo .deps/CXXNode.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXQADSurface.lo -MD -MP -MF .deps/CXXQADSurface.Tpo -c -o CXXQADSurface.lo CXXQADSurface.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXQADSurface.lo -MD -MP -MF .deps/CXXQADSurface.Tpo -c CXXQADSurface.cpp -fPIC -DPIC -o .libs/CXXQADSurface.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXQADSurface.lo -MD -MP -MF .deps/CXXQADSurface.Tpo -c CXXQADSurface.cpp -o CXXQADSurface.o >/dev/null 2>&1 >mv -f .deps/CXXQADSurface.Tpo .deps/CXXQADSurface.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXQADSurfaceStaticData.lo -MD -MP -MF .deps/CXXQADSurfaceStaticData.Tpo -c -o CXXQADSurfaceStaticData.lo CXXQADSurfaceStaticData.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXQADSurfaceStaticData.lo -MD -MP -MF .deps/CXXQADSurfaceStaticData.Tpo -c CXXQADSurfaceStaticData.cpp -fPIC -DPIC -o .libs/CXXQADSurfaceStaticData.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXQADSurfaceStaticData.lo -MD -MP -MF .deps/CXXQADSurfaceStaticData.Tpo -c CXXQADSurfaceStaticData.cpp -o CXXQADSurfaceStaticData.o >/dev/null 2>&1 >mv -f .deps/CXXQADSurfaceStaticData.Tpo .deps/CXXQADSurfaceStaticData.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSpace.lo -MD -MP -MF .deps/CXXSpace.Tpo -c -o CXXSpace.lo CXXSpace.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSpace.lo -MD -MP -MF .deps/CXXSpace.Tpo -c CXXSpace.cpp -fPIC -DPIC -o .libs/CXXSpace.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CXXSpace.lo -MD -MP -MF .deps/CXXSpace.Tpo -c CXXSpace.cpp -o CXXSpace.o >/dev/null 2>&1 >mv -f .deps/CXXSpace.Tpo .deps/CXXSpace.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o libccp4mg-surface.la -rpath /usr/lib CXXSphereElement.lo CXXChargeTable.lo CXXSphereNode.lo CXXCircle.lo CXXSphereTriangle.lo CXXCircleNode.lo CXXSphereTriangleEdge.lo CXXCoord.lo CXXSurface.lo CXXCreator.lo CXXSurfaceVertex.lo CXXException.lo CXXTorusElement.lo CXXFFTSolventMap.lo CXXTorusNode.lo CXXFortranFile.lo CXXNewHood.lo CXXTriangle.lo CXXNode.lo CXXQADSurface.lo CXXQADSurfaceStaticData.lo CXXSpace.lo >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/CXXSphereElement.o .libs/CXXChargeTable.o .libs/CXXSphereNode.o .libs/CXXCircle.o .libs/CXXSphereTriangle.o .libs/CXXCircleNode.o .libs/CXXSphereTriangleEdge.o .libs/CXXCoord.o .libs/CXXSurface.o .libs/CXXCreator.o .libs/CXXSurfaceVertex.o .libs/CXXException.o .libs/CXXTorusElement.o .libs/CXXFFTSolventMap.o .libs/CXXTorusNode.o .libs/CXXFortranFile.o .libs/CXXNewHood.o .libs/CXXTriangle.o .libs/CXXNode.o .libs/CXXQADSurface.o .libs/CXXQADSurfaceStaticData.o .libs/CXXSpace.o -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libccp4mg-surface.so.0 -o .libs/libccp4mg-surface.so.0.0.0 >(cd .libs && rm -f libccp4mg-surface.so.0 && ln -s libccp4mg-surface.so.0.0.0 libccp4mg-surface.so.0) >(cd .libs && rm -f libccp4mg-surface.so && ln -s libccp4mg-surface.so.0.0.0 libccp4mg-surface.so) >i686-pc-linux-gnu-ar cru .libs/libccp4mg-surface.a CXXSphereElement.o CXXChargeTable.o CXXSphereNode.o CXXCircle.o CXXSphereTriangle.o CXXCircleNode.o CXXSphereTriangleEdge.o CXXCoord.o CXXSurface.o CXXCreator.o CXXSurfaceVertex.o CXXException.o CXXTorusElement.o CXXFFTSolventMap.o CXXTorusNode.o CXXFortranFile.o CXXNewHood.o CXXTriangle.o CXXNode.o CXXQADSurface.o CXXQADSurfaceStaticData.o CXXSpace.o >i686-pc-linux-gnu-ranlib .libs/libccp4mg-surface.a >creating libccp4mg-surface.la >(cd .libs && rm -f libccp4mg-surface.la && ln -s ../libccp4mg-surface.la libccp4mg-surface.la) >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/surface' >Making all in coot-surface >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-surface' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../surface -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c -o coot-surface.lo coot-surface.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../surface -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c coot-surface.cc -fPIC -DPIC -o .libs/coot-surface.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../surface -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-surface.lo -MD -MP -MF .deps/coot-surface.Tpo -c coot-surface.cc -o coot-surface.o >/dev/null 2>&1 >mv -f .deps/coot-surface.Tpo .deps/coot-surface.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../surface -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c -o rgbreps.lo rgbreps.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../surface -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c rgbreps.cc -fPIC -DPIC -o .libs/rgbreps.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../surface -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT rgbreps.lo -MD -MP -MF .deps/rgbreps.Tpo -c rgbreps.cc -o rgbreps.o >/dev/null 2>&1 >mv -f .deps/rgbreps.Tpo .deps/rgbreps.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-surface.la -rpath /usr/lib coot-surface.lo rgbreps.lo ../surface/libccp4mg-surface.la >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/coot-surface.o .libs/rgbreps.o -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/surface/.libs ../surface/.libs/libccp4mg-surface.so -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-surface.so.0 -o .libs/libcoot-surface.so.0.0.0 >(cd .libs && rm -f libcoot-surface.so.0 && ln -s libcoot-surface.so.0.0.0 libcoot-surface.so.0) >(cd .libs && rm -f libcoot-surface.so && ln -s libcoot-surface.so.0.0.0 libcoot-surface.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-surface.a coot-surface.o rgbreps.o >i686-pc-linux-gnu-ranlib .libs/libcoot-surface.a >creating libcoot-surface.la >(cd .libs && rm -f libcoot-surface.la && ln -s ../libcoot-surface.la libcoot-surface.la) >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-surface' >Making all in atom-utils >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/atom-utils' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I../coot-utils -I../angles -I../build -I../mini-mol -I../db-main -I../sequence-view -I../ideal -I../coot-surface -I../surface -I../src -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -O2 -march=prescott -pipe -fomit-frame-pointer -MT atom-utils.lo -MD -MP -MF .deps/atom-utils.Tpo -c -o atom-utils.lo atom-utils.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I../coot-utils -I../angles -I../build -I../mini-mol -I../db-main -I../sequence-view -I../ideal -I../coot-surface -I../surface -I../src -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -O2 -march=prescott -pipe -fomit-frame-pointer -MT atom-utils.lo -MD -MP -MF .deps/atom-utils.Tpo -c atom-utils.cc -fPIC -DPIC -o .libs/atom-utils.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../geometry -I../coot-utils -I../angles -I../build -I../mini-mol -I../db-main -I../sequence-view -I../ideal -I../coot-surface -I../surface -I../src -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -O2 -march=prescott -pipe -fomit-frame-pointer -MT atom-utils.lo -MD -MP -MF .deps/atom-utils.Tpo -c atom-utils.cc -o atom-utils.o >/dev/null 2>&1 >mv -f .deps/atom-utils.Tpo .deps/atom-utils.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-atomutils.la -rpath /usr/lib atom-utils.lo >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/atom-utils.o -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-atomutils.so.0 -o .libs/libcoot-atomutils.so.0.0.0 >(cd .libs && rm -f libcoot-atomutils.so.0 && ln -s libcoot-atomutils.so.0.0.0 libcoot-atomutils.so.0) >(cd .libs && rm -f libcoot-atomutils.so && ln -s libcoot-atomutils.so.0.0.0 libcoot-atomutils.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-atomutils.a atom-utils.o >i686-pc-linux-gnu-ranlib .libs/libcoot-atomutils.a >creating libcoot-atomutils.la >(cd .libs && rm -f libcoot-atomutils.la && ln -s ../libcoot-atomutils.la libcoot-atomutils.la) >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/atom-utils' >Making all in skeleton >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/skeleton' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../angles -I../atom-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT dm-utils.lo -MD -MP -MF .deps/dm-utils.Tpo -c -o dm-utils.lo dm-utils.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../angles -I../atom-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT dm-utils.lo -MD -MP -MF .deps/dm-utils.Tpo -c dm-utils.cc -fPIC -DPIC -o .libs/dm-utils.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../angles -I../atom-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT dm-utils.lo -MD -MP -MF .deps/dm-utils.Tpo -c dm-utils.cc -o dm-utils.o >/dev/null 2>&1 >mv -f .deps/dm-utils.Tpo .deps/dm-utils.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../angles -I../atom-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT graphical_skel.lo -MD -MP -MF .deps/graphical_skel.Tpo -c -o graphical_skel.lo graphical_skel.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../angles -I../atom-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT graphical_skel.lo -MD -MP -MF .deps/graphical_skel.Tpo -c graphical_skel.cc -fPIC -DPIC -o .libs/graphical_skel.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../angles -I../atom-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT graphical_skel.lo -MD -MP -MF .deps/graphical_skel.Tpo -c graphical_skel.cc -o graphical_skel.o >/dev/null 2>&1 >mv -f .deps/graphical_skel.Tpo .deps/graphical_skel.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../angles -I../atom-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT BuildCas.lo -MD -MP -MF .deps/BuildCas.Tpo -c -o BuildCas.lo BuildCas.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../angles -I../atom-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT BuildCas.lo -MD -MP -MF .deps/BuildCas.Tpo -c BuildCas.cc -fPIC -DPIC -o .libs/BuildCas.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../angles -I../atom-utils -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT BuildCas.lo -MD -MP -MF .deps/BuildCas.Tpo -c BuildCas.cc -o BuildCas.o >/dev/null 2>&1 >mv -f .deps/BuildCas.Tpo .deps/BuildCas.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-skeleton.la -rpath /usr/lib dm-utils.lo graphical_skel.lo BuildCas.lo ../atom-utils/libcoot-atomutils.la >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/dm-utils.o .libs/graphical_skel.o .libs/BuildCas.o -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/atom-utils/.libs ../atom-utils/.libs/libcoot-atomutils.so -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-skeleton.so.0 -o .libs/libcoot-skeleton.so.0.0.0 >(cd .libs && rm -f libcoot-skeleton.so.0 && ln -s libcoot-skeleton.so.0.0.0 libcoot-skeleton.so.0) >(cd .libs && rm -f libcoot-skeleton.so && ln -s libcoot-skeleton.so.0.0.0 libcoot-skeleton.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-skeleton.a dm-utils.o graphical_skel.o BuildCas.o >i686-pc-linux-gnu-ranlib .libs/libcoot-skeleton.a >creating libcoot-skeleton.la >(cd .libs && rm -f libcoot-skeleton.la && ln -s ../libcoot-skeleton.la libcoot-skeleton.la) >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/skeleton' >Making all in ccp4mg-utils >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ccp4mg-utils' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT geomutil.lo -MD -MP -MF .deps/geomutil.Tpo -c -o geomutil.lo geomutil.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT geomutil.lo -MD -MP -MF .deps/geomutil.Tpo -c geomutil.cc -fPIC -DPIC -o .libs/geomutil.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT geomutil.lo -MD -MP -MF .deps/geomutil.Tpo -c geomutil.cc -o geomutil.o >/dev/null 2>&1 >mv -f .deps/geomutil.Tpo .deps/geomutil.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT mgtree.lo -MD -MP -MF .deps/mgtree.Tpo -c -o mgtree.lo mgtree.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT mgtree.lo -MD -MP -MF .deps/mgtree.Tpo -c mgtree.cc -fPIC -DPIC -o .libs/mgtree.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT mgtree.lo -MD -MP -MF .deps/mgtree.Tpo -c mgtree.cc -o mgtree.o >/dev/null 2>&1 >mv -f .deps/mgtree.Tpo .deps/mgtree.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT cartesian.lo -MD -MP -MF .deps/cartesian.Tpo -c -o cartesian.lo cartesian.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT cartesian.lo -MD -MP -MF .deps/cartesian.Tpo -c cartesian.cc -fPIC -DPIC -o .libs/cartesian.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT cartesian.lo -MD -MP -MF .deps/cartesian.Tpo -c cartesian.cc -o cartesian.o >/dev/null 2>&1 >mv -f .deps/cartesian.Tpo .deps/cartesian.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c -o matrix.lo matrix.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.cc -fPIC -DPIC -o .libs/matrix.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT matrix.lo -MD -MP -MF .deps/matrix.Tpo -c matrix.cc -o matrix.o >/dev/null 2>&1 >mv -f .deps/matrix.Tpo .deps/matrix.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT quat.lo -MD -MP -MF .deps/quat.Tpo -c -o quat.lo quat.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT quat.lo -MD -MP -MF .deps/quat.Tpo -c quat.cc -fPIC -DPIC -o .libs/quat.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT quat.lo -MD -MP -MF .deps/quat.Tpo -c quat.cc -o quat.o >/dev/null 2>&1 >mv -f .deps/quat.Tpo .deps/quat.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c -o ppmutil.lo ppmutil.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c ppmutil.cc -fPIC -DPIC -o .libs/ppmutil.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT ppmutil.lo -MD -MP -MF .deps/ppmutil.Tpo -c ppmutil.cc -o ppmutil.o >/dev/null 2>&1 >mv -f .deps/ppmutil.Tpo .deps/ppmutil.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o libccp4mg-utils.la -rpath /usr/lib geomutil.lo mgtree.lo cartesian.lo matrix.lo quat.lo ppmutil.lo >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/geomutil.o .libs/mgtree.o .libs/cartesian.o .libs/matrix.o .libs/quat.o .libs/ppmutil.o -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libccp4mg-utils.so.0 -o .libs/libccp4mg-utils.so.0.0.0 >(cd .libs && rm -f libccp4mg-utils.so.0 && ln -s libccp4mg-utils.so.0.0.0 libccp4mg-utils.so.0) >(cd .libs && rm -f libccp4mg-utils.so && ln -s libccp4mg-utils.so.0.0.0 libccp4mg-utils.so) >i686-pc-linux-gnu-ar cru .libs/libccp4mg-utils.a geomutil.o mgtree.o cartesian.o matrix.o quat.o ppmutil.o >i686-pc-linux-gnu-ranlib .libs/libccp4mg-utils.a >creating libccp4mg-utils.la >(cd .libs && rm -f libccp4mg-utils.la && ln -s ../libccp4mg-utils.la libccp4mg-utils.la) >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ccp4mg-utils' >Making all in density-contour >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/density-contour' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c -o Vectors.lo Vectors.cpp >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c Vectors.cpp -fPIC -DPIC -o .libs/Vectors.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT Vectors.lo -MD -MP -MF .deps/Vectors.Tpo -c Vectors.cpp -o Vectors.o >/dev/null 2>&1 >mv -f .deps/Vectors.Tpo .deps/Vectors.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c -o CIsoSurface.lo CIsoSurface.cpp > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c CIsoSurface.cpp -fPIC -DPIC -o .libs/CIsoSurface.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT CIsoSurface.lo -MD -MP -MF .deps/CIsoSurface.Tpo -c CIsoSurface.cpp -o CIsoSurface.o >/dev/null 2>&1 >mv -f .deps/CIsoSurface.Tpo .deps/CIsoSurface.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-isosurface.la -rpath /usr/lib Vectors.lo CIsoSurface.lo >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/Vectors.o .libs/CIsoSurface.o -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-isosurface.so.0 -o .libs/libcoot-isosurface.so.0.0.0 >(cd .libs && rm -f libcoot-isosurface.so.0 && ln -s libcoot-isosurface.so.0.0.0 libcoot-isosurface.so.0) >(cd .libs && rm -f libcoot-isosurface.so && ln -s libcoot-isosurface.so.0.0.0 libcoot-isosurface.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-isosurface.a Vectors.o CIsoSurface.o >i686-pc-linux-gnu-ranlib .libs/libcoot-isosurface.a >creating libcoot-isosurface.la >(cd .libs && rm -f libcoot-isosurface.la && ln -s ../libcoot-isosurface.la libcoot-isosurface.la) >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/density-contour' >Making all in mini-mol >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c -o mini-mol.lo mini-mol.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c mini-mol.cc -fPIC -DPIC -o .libs/mini-mol.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT mini-mol.lo -MD -MP -MF .deps/mini-mol.Tpo -c mini-mol.cc -o mini-mol.o >/dev/null 2>&1 >mv -f .deps/mini-mol.Tpo .deps/mini-mol.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c -o mini-mol-utils.lo mini-mol-utils.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c mini-mol-utils.cc -fPIC -DPIC -o .libs/mini-mol-utils.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT mini-mol-utils.lo -MD -MP -MF .deps/mini-mol-utils.Tpo -c mini-mol-utils.cc -o mini-mol-utils.o >/dev/null 2>&1 >mv -f .deps/mini-mol-utils.Tpo .deps/mini-mol-utils.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-mini-mol.la -rpath /usr/lib mini-mol.lo mini-mol-utils.lo ../coot-utils/libcoot-coord-utils.la -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/mini-mol.o .libs/mini-mol-utils.o -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs -L/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs ../coot-utils/.libs/libcoot-coord-utils.so -L/usr/lib -L/usr /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so -lccp4c -lmmdb -lrfftw -lfftw -lz -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-mini-mol.so.0 -o .libs/libcoot-mini-mol.so.0.0.0 >(cd .libs && rm -f libcoot-mini-mol.so.0 && ln -s libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so.0) >(cd .libs && rm -f libcoot-mini-mol.so && ln -s libcoot-mini-mol.so.0.0.0 libcoot-mini-mol.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-mini-mol.a mini-mol.o mini-mol-utils.o >i686-pc-linux-gnu-ranlib .libs/libcoot-mini-mol.a >creating libcoot-mini-mol.la >(cd .libs && rm -f libcoot-mini-mol.la && ln -s ../libcoot-mini-mol.la libcoot-mini-mol.la) >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT testminimol.o -MD -MP -MF .deps/testminimol.Tpo -c -o testminimol.o testminimol.cc >mv -f .deps/testminimol.Tpo .deps/testminimol.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o testminimol testminimol.o libcoot-mini-mol.la -L/usr/lib -L/usr -lmmdb -lm >i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/testminimol testminimol.o ./.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lrfftw -lfftw -lz -lmmdb -lm >creating testminimol >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol' >Making all in coords >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coords' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT Bond_lines.lo -MD -MP -MF .deps/Bond_lines.Tpo -c -o Bond_lines.lo Bond_lines.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT Bond_lines.lo -MD -MP -MF .deps/Bond_lines.Tpo -c Bond_lines.cc -fPIC -DPIC -o .libs/Bond_lines.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT Bond_lines.lo -MD -MP -MF .deps/Bond_lines.Tpo -c Bond_lines.cc -o Bond_lines.o >/dev/null 2>&1 >mv -f .deps/Bond_lines.Tpo .deps/Bond_lines.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT Cartesian.lo -MD -MP -MF .deps/Cartesian.Tpo -c -o Cartesian.lo Cartesian.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT Cartesian.lo -MD -MP -MF .deps/Cartesian.Tpo -c Cartesian.cc -fPIC -DPIC -o .libs/Cartesian.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT Cartesian.lo -MD -MP -MF .deps/Cartesian.Tpo -c Cartesian.cc -o Cartesian.o >/dev/null 2>&1 >mv -f .deps/Cartesian.Tpo .deps/Cartesian.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT cos-sin.lo -MD -MP -MF .deps/cos-sin.Tpo -c -o cos-sin.lo cos-sin.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT cos-sin.lo -MD -MP -MF .deps/cos-sin.Tpo -c cos-sin.cc -fPIC -DPIC -o .libs/cos-sin.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT cos-sin.lo -MD -MP -MF .deps/cos-sin.Tpo -c cos-sin.cc -o cos-sin.o >/dev/null 2>&1 >mv -f .deps/cos-sin.Tpo .deps/cos-sin.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT mmdb-extras.lo -MD -MP -MF .deps/mmdb-extras.Tpo -c -o mmdb-extras.lo mmdb-extras.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT mmdb-extras.lo -MD -MP -MF .deps/mmdb-extras.Tpo -c mmdb-extras.cc -fPIC -DPIC -o .libs/mmdb-extras.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT mmdb-extras.lo -MD -MP -MF .deps/mmdb-extras.Tpo -c mmdb-extras.cc -o mmdb-extras.o >/dev/null 2>&1 >mv -f .deps/mmdb-extras.Tpo .deps/mmdb-extras.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c -o utils.lo utils.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.cc -fPIC -DPIC -o .libs/utils.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT utils.lo -MD -MP -MF .deps/utils.Tpo -c utils.cc -o utils.o >/dev/null 2>&1 >mv -f .deps/utils.Tpo .deps/utils.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT mmdb.lo -MD -MP -MF .deps/mmdb.Tpo -c -o mmdb.lo mmdb.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT mmdb.lo -MD -MP -MF .deps/mmdb.Tpo -c mmdb.cc -fPIC -DPIC -o .libs/mmdb.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT mmdb.lo -MD -MP -MF .deps/mmdb.Tpo -c mmdb.cc -o mmdb.o >/dev/null 2>&1 >mv -f .deps/mmdb.Tpo .deps/mmdb.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT mmdb-crystal.lo -MD -MP -MF .deps/mmdb-crystal.Tpo -c -o mmdb-crystal.lo mmdb-crystal.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT mmdb-crystal.lo -MD -MP -MF .deps/mmdb-crystal.Tpo -c mmdb-crystal.cc -fPIC -DPIC -o .libs/mmdb-crystal.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT mmdb-crystal.lo -MD -MP -MF .deps/mmdb-crystal.Tpo -c mmdb-crystal.cc -o mmdb-crystal.o >/dev/null 2>&1 >mv -f .deps/mmdb-crystal.Tpo .deps/mmdb-crystal.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT Bond_lines_ext.lo -MD -MP -MF .deps/Bond_lines_ext.Tpo -c -o Bond_lines_ext.lo Bond_lines_ext.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT Bond_lines_ext.lo -MD -MP -MF .deps/Bond_lines_ext.Tpo -c Bond_lines_ext.cc -fPIC -DPIC -o .libs/Bond_lines_ext.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT Bond_lines_ext.lo -MD -MP -MF .deps/Bond_lines_ext.Tpo -c Bond_lines_ext.cc -o Bond_lines_ext.o >/dev/null 2>&1 >mv -f .deps/Bond_lines_ext.Tpo .deps/Bond_lines_ext.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-close.lo -MD -MP -MF .deps/coot-close.Tpo -c -o coot-close.lo coot-close.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-close.lo -MD -MP -MF .deps/coot-close.Tpo -c coot-close.cc -fPIC -DPIC -o .libs/coot-close.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../skeleton -I../coot-utils -I../mini-mol -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-close.lo -MD -MP -MF .deps/coot-close.Tpo -c coot-close.cc -o coot-close.o >/dev/null 2>&1 >mv -f .deps/coot-close.Tpo .deps/coot-close.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-coords.la -rpath /usr/lib Bond_lines.lo Cartesian.lo cos-sin.lo mmdb-extras.lo utils.lo mmdb.lo mmdb-crystal.lo Bond_lines_ext.lo coot-close.lo ../coot-utils/libcoot-shelx.la ../mini-mol/libcoot-mini-mol.la >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/Bond_lines.o .libs/Cartesian.o .libs/cos-sin.o .libs/mmdb-extras.o .libs/utils.o .libs/mmdb.o .libs/mmdb-crystal.o .libs/Bond_lines_ext.o .libs/coot-close.o -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs -L/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs ../coot-utils/.libs/libcoot-shelx.so -L/usr/lib -L/usr ../mini-mol/.libs/libcoot-mini-mol.so -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-coords.so.0 -o .libs/libcoot-coords.so.0.0.0 >(cd .libs && rm -f libcoot-coords.so.0 && ln -s libcoot-coords.so.0.0.0 libcoot-coords.so.0) >(cd .libs && rm -f libcoot-coords.so && ln -s libcoot-coords.so.0.0.0 libcoot-coords.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-coords.a Bond_lines.o Cartesian.o cos-sin.o mmdb-extras.o utils.o mmdb.o mmdb-crystal.o Bond_lines_ext.o coot-close.o >i686-pc-linux-gnu-ranlib .libs/libcoot-coords.a >creating libcoot-coords.la >(cd .libs && rm -f libcoot-coords.la && ln -s ../libcoot-coords.la libcoot-coords.la) >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coords' >Making all in angles >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/angles' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include -g -O1 -O2 -march=prescott -pipe -fomit-frame-pointer -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c -o libcoot_AngleInfo_la-AngleInfo.lo `test -f 'AngleInfo.cc' || echo './'`AngleInfo.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include -g -O1 -O2 -march=prescott -pipe -fomit-frame-pointer -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c AngleInfo.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include -g -O1 -O2 -march=prescott -pipe -fomit-frame-pointer -MT libcoot_AngleInfo_la-AngleInfo.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo.Tpo -c AngleInfo.cc -o libcoot_AngleInfo_la-AngleInfo.o >/dev/null 2>&1 >mv -f .deps/libcoot_AngleInfo_la-AngleInfo.Tpo .deps/libcoot_AngleInfo_la-AngleInfo.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include -g -O1 -O2 -march=prescott -pipe -fomit-frame-pointer -MT libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo -c -o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo `test -f 'AngleInfo-angle-torsions-autogen.cc' || echo './'`AngleInfo-angle-torsions-autogen.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include -g -O1 -O2 -march=prescott -pipe -fomit-frame-pointer -MT libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo -c AngleInfo-angle-torsions-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include -g -O1 -O2 -march=prescott -pipe -fomit-frame-pointer -MT libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo -c AngleInfo-angle-torsions-autogen.cc -o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o >/dev/null 2>&1 >mv -f .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Tpo .deps/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include -g -O1 -O2 -march=prescott -pipe -fomit-frame-pointer -MT libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo -c -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo `test -f 'AngleInfo-theta_2-autogen.cc' || echo './'`AngleInfo-theta_2-autogen.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include -g -O1 -O2 -march=prescott -pipe -fomit-frame-pointer -MT libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo -c AngleInfo-theta_2-autogen.cc -fPIC -DPIC -o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include -g -O1 -O2 -march=prescott -pipe -fomit-frame-pointer -MT libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo -MD -MP -MF .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo -c AngleInfo-theta_2-autogen.cc -o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o >/dev/null 2>&1 >mv -f .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Tpo .deps/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -g -O1 -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-AngleInfo.la -rpath /usr/lib libcoot_AngleInfo_la-AngleInfo.lo libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.lo libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.lo >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/libcoot_AngleInfo_la-AngleInfo.o .libs/libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o .libs/libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-AngleInfo.so.0 -o .libs/libcoot-AngleInfo.so.0.0.0 >(cd .libs && rm -f libcoot-AngleInfo.so.0 && ln -s libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so.0) >(cd .libs && rm -f libcoot-AngleInfo.so && ln -s libcoot-AngleInfo.so.0.0.0 libcoot-AngleInfo.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-AngleInfo.a libcoot_AngleInfo_la-AngleInfo.o libcoot_AngleInfo_la-AngleInfo-angle-torsions-autogen.o libcoot_AngleInfo_la-AngleInfo-theta_2-autogen.o >i686-pc-linux-gnu-ranlib .libs/libcoot-AngleInfo.a >creating libcoot-AngleInfo.la >(cd .libs && rm -f libcoot-AngleInfo.la && ln -s ../libcoot-AngleInfo.la libcoot-AngleInfo.la) >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/angles' >Making all in db-main >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/db-main' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT db-main.lo -MD -MP -MF .deps/db-main.Tpo -c -o db-main.lo db-main.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT db-main.lo -MD -MP -MF .deps/db-main.Tpo -c db-main.cc -fPIC -DPIC -o .libs/db-main.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT db-main.lo -MD -MP -MF .deps/db-main.Tpo -c db-main.cc -o db-main.o >/dev/null 2>&1 >mv -f .deps/db-main.Tpo .deps/db-main.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT db-strands.lo -MD -MP -MF .deps/db-strands.Tpo -c -o db-strands.lo db-strands.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT db-strands.lo -MD -MP -MF .deps/db-strands.Tpo -c db-strands.cc -fPIC -DPIC -o .libs/db-strands.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT db-strands.lo -MD -MP -MF .deps/db-strands.Tpo -c db-strands.cc -o db-strands.o >/dev/null 2>&1 >mv -f .deps/db-strands.Tpo .deps/db-strands.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-db-main.la -rpath /usr/lib db-main.lo db-strands.lo >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/db-main.o .libs/db-strands.o -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-db-main.so.0 -o .libs/libcoot-db-main.so.0.0.0 >(cd .libs && rm -f libcoot-db-main.so.0 && ln -s libcoot-db-main.so.0.0.0 libcoot-db-main.so.0) >(cd .libs && rm -f libcoot-db-main.so && ln -s libcoot-db-main.so.0.0.0 libcoot-db-main.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-db-main.a db-main.o db-strands.o >i686-pc-linux-gnu-ranlib .libs/libcoot-db-main.a >creating libcoot-db-main.la >(cd .libs && rm -f libcoot-db-main.la && ln -s ../libcoot-db-main.la libcoot-db-main.la) >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I../mini-mol -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT testdbmain.o -MD -MP -MF .deps/testdbmain.Tpo -c -o testdbmain.o testdbmain.cc >mv -f .deps/testdbmain.Tpo .deps/testdbmain.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DPKGDATADIR='"/usr/share/coot"' -DDATADIR='"/usr/share"' -O2 -march=prescott -pipe -fomit-frame-pointer -o testdbmain testdbmain.o libcoot-db-main.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-utils.la -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm -L/usr/lib -L/usr -lmmdb -lm >i686-pc-linux-gnu-g++ -DPKGDATADIR=\"/usr/share/coot\" -DDATADIR=\"/usr/share\" -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/testdbmain testdbmain.o ./.libs/libcoot-db-main.so ../mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so -L/usr/lib -L/usr ../coot-utils/.libs/libcoot-coord-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so ../coot-utils/.libs/libcoot-utils.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lrfftw -lfftw -lz -lmmdb -lm >creating testdbmain >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/db-main' >Making all in geometry >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/geometry' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT protein-geometry.lo -MD -MP -MF .deps/protein-geometry.Tpo -c -o protein-geometry.lo protein-geometry.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT protein-geometry.lo -MD -MP -MF .deps/protein-geometry.Tpo -c protein-geometry.cc -fPIC -DPIC -o .libs/protein-geometry.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT protein-geometry.lo -MD -MP -MF .deps/protein-geometry.Tpo -c protein-geometry.cc -o protein-geometry.o >/dev/null 2>&1 >mv -f .deps/protein-geometry.Tpo .deps/protein-geometry.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT protein-geometry-mmdb.lo -MD -MP -MF .deps/protein-geometry-mmdb.Tpo -c -o protein-geometry-mmdb.lo protein-geometry-mmdb.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT protein-geometry-mmdb.lo -MD -MP -MF .deps/protein-geometry-mmdb.Tpo -c protein-geometry-mmdb.cc -fPIC -DPIC -o .libs/protein-geometry-mmdb.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT protein-geometry-mmdb.lo -MD -MP -MF .deps/protein-geometry-mmdb.Tpo -c protein-geometry-mmdb.cc -o protein-geometry-mmdb.o >/dev/null 2>&1 >mv -f .deps/protein-geometry-mmdb.Tpo .deps/protein-geometry-mmdb.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-geometry.la -rpath /usr/lib protein-geometry.lo protein-geometry-mmdb.lo ../coot-utils/libcoot-utils.la -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm -L/usr/lib -L/usr -lmmdb -lm >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/protein-geometry.o .libs/protein-geometry-mmdb.o -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs ../coot-utils/.libs/libcoot-utils.so -L/usr/lib /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so -lccp4c -L/usr -lrfftw -lfftw -lz -lmmdb -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-geometry.so.0 -o .libs/libcoot-geometry.so.0.0.0 >(cd .libs && rm -f libcoot-geometry.so.0 && ln -s libcoot-geometry.so.0.0.0 libcoot-geometry.so.0) >(cd .libs && rm -f libcoot-geometry.so && ln -s libcoot-geometry.so.0.0.0 libcoot-geometry.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-geometry.a protein-geometry.o protein-geometry-mmdb.o >i686-pc-linux-gnu-ranlib .libs/libcoot-geometry.a >creating libcoot-geometry.la >(cd .libs && rm -f libcoot-geometry.la && ln -s ../libcoot-geometry.la libcoot-geometry.la) >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT test-geometry.o -MD -MP -MF .deps/test-geometry.Tpo -c -o test-geometry.o test-geometry.cc >mv -f .deps/test-geometry.Tpo .deps/test-geometry.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DDATADIR='"/usr/share"' -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o test-geometry test-geometry.o ./libcoot-geometry.la >i686-pc-linux-gnu-g++ -DDATADIR=\"/usr/share\" -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/test-geometry test-geometry.o ./.libs/libcoot-geometry.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so -L/usr/lib /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -L/usr -lrfftw -lfftw -lz -lmmdb >creating test-geometry >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/geometry' >Making all in ideal >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ideal' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I../mini-mol -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT simple-restraint.lo -MD -MP -MF .deps/simple-restraint.Tpo -c -o simple-restraint.lo simple-restraint.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I../mini-mol -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT simple-restraint.lo -MD -MP -MF .deps/simple-restraint.Tpo -c simple-restraint.cc -fPIC -DPIC -o .libs/simple-restraint.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I../mini-mol -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT simple-restraint.lo -MD -MP -MF .deps/simple-restraint.Tpo -c simple-restraint.cc -o simple-restraint.o >/dev/null 2>&1 >mv -f .deps/simple-restraint.Tpo .deps/simple-restraint.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I../mini-mol -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT pepflip.lo -MD -MP -MF .deps/pepflip.Tpo -c -o pepflip.lo pepflip.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I../mini-mol -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT pepflip.lo -MD -MP -MF .deps/pepflip.Tpo -c pepflip.cc -fPIC -DPIC -o .libs/pepflip.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I../mini-mol -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT pepflip.lo -MD -MP -MF .deps/pepflip.Tpo -c pepflip.cc -o pepflip.o >/dev/null 2>&1 >mv -f .deps/pepflip.Tpo .deps/pepflip.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I../mini-mol -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT regularize-minimol.lo -MD -MP -MF .deps/regularize-minimol.Tpo -c -o regularize-minimol.lo regularize-minimol.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I../mini-mol -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT regularize-minimol.lo -MD -MP -MF .deps/regularize-minimol.Tpo -c regularize-minimol.cc -fPIC -DPIC -o .libs/regularize-minimol.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I../mini-mol -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT regularize-minimol.lo -MD -MP -MF .deps/regularize-minimol.Tpo -c regularize-minimol.cc -o regularize-minimol.o >/dev/null 2>&1 >mv -f .deps/regularize-minimol.Tpo .deps/regularize-minimol.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-ideal.la -rpath /usr/lib simple-restraint.lo pepflip.lo regularize-minimol.lo ../coot-utils/libcoot-utils.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-coord-extras.la -L/usr/lib -lgsl -lgslcblas -lm >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/simple-restraint.o .libs/pepflip.o .libs/regularize-minimol.o -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs -L/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs ../coot-utils/.libs/libcoot-utils.so ../mini-mol/.libs/libcoot-mini-mol.so -L/usr/lib -L/usr ../coot-utils/.libs/libcoot-shelx.so ../coot-utils/.libs/libcoot-coord-extras.so /usr/lib/libgsl.so /usr/lib/libgslcblas.so -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-ideal.so.0 -o .libs/libcoot-ideal.so.0.0.0 >(cd .libs && rm -f libcoot-ideal.so.0 && ln -s libcoot-ideal.so.0.0.0 libcoot-ideal.so.0) >(cd .libs && rm -f libcoot-ideal.so && ln -s libcoot-ideal.so.0.0.0 libcoot-ideal.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-ideal.a simple-restraint.o pepflip.o regularize-minimol.o >i686-pc-linux-gnu-ranlib .libs/libcoot-ideal.a >creating libcoot-ideal.la >(cd .libs && rm -f libcoot-ideal.la && ln -s ../libcoot-ideal.la libcoot-ideal.la) >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I../mini-mol -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT test-indexing.o -MD -MP -MF .deps/test-indexing.Tpo -c -o test-indexing.o test-indexing.cc >mv -f .deps/test-indexing.Tpo .deps/test-indexing.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o test-indexing test-indexing.o ./libcoot-ideal.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-utils.la -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm -L/usr/lib -L/usr -lmmdb -lm >i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/test-indexing test-indexing.o ./.libs/libcoot-ideal.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs/libcoot-mini-mol.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-extras.so /usr/lib/libgsl.so /usr/lib/libgslcblas.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-coord-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lrfftw -lfftw -lz -lmmdb -lm >creating test-indexing >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I../mini-mol -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT with-geometry.o -MD -MP -MF .deps/with-geometry.Tpo -c -o with-geometry.o with-geometry.cc >mv -f .deps/with-geometry.Tpo .deps/with-geometry.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o with-geometry with-geometry.o ./libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-utils.la -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm -L/usr/lib -L/usr -lmmdb -lm >i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/with-geometry with-geometry.o ./.libs/libcoot-ideal.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-extras.so /usr/lib/libgsl.so /usr/lib/libgslcblas.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-coord-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lrfftw -lfftw -lz -lmmdb -lm >creating with-geometry >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coords -I../coot-utils -I../mini-mol -I../geometry -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT with-map.o -MD -MP -MF .deps/with-map.Tpo -c -o with-map.o with-map.cc >mv -f .deps/with-map.Tpo .deps/with-map.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o with-map with-map.o ./libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-utils.la -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm -L/usr/lib -L/usr -lmmdb -lm >i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/with-map with-map.o ./.libs/libcoot-ideal.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-extras.so /usr/lib/libgsl.so /usr/lib/libgslcblas.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-coord-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lrfftw -lfftw -lz -lmmdb -lm >creating with-map >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ideal' >Making all in ligand >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ligand' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT ligand.lo -MD -MP -MF .deps/ligand.Tpo -c -o ligand.lo ligand.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT ligand.lo -MD -MP -MF .deps/ligand.Tpo -c ligand.cc -fPIC -DPIC -o .libs/ligand.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT ligand.lo -MD -MP -MF .deps/ligand.Tpo -c ligand.cc -o ligand.o >/dev/null 2>&1 >mv -f .deps/ligand.Tpo .deps/ligand.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT ligand-extras.lo -MD -MP -MF .deps/ligand-extras.Tpo -c -o ligand-extras.lo ligand-extras.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT ligand-extras.lo -MD -MP -MF .deps/ligand-extras.Tpo -c ligand-extras.cc -fPIC -DPIC -o .libs/ligand-extras.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT ligand-extras.lo -MD -MP -MF .deps/ligand-extras.Tpo -c ligand-extras.cc -o ligand-extras.o >/dev/null 2>&1 >mv -f .deps/ligand-extras.Tpo .deps/ligand-extras.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c -o residue_by_phi_psi.lo residue_by_phi_psi.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c residue_by_phi_psi.cc -fPIC -DPIC -o .libs/residue_by_phi_psi.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT residue_by_phi_psi.lo -MD -MP -MF .deps/residue_by_phi_psi.Tpo -c residue_by_phi_psi.cc -o residue_by_phi_psi.o >/dev/null 2>&1 >mv -f .deps/residue_by_phi_psi.Tpo .deps/residue_by_phi_psi.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT wiggly-ligand.lo -MD -MP -MF .deps/wiggly-ligand.Tpo -c -o wiggly-ligand.lo wiggly-ligand.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT wiggly-ligand.lo -MD -MP -MF .deps/wiggly-ligand.Tpo -c wiggly-ligand.cc -fPIC -DPIC -o .libs/wiggly-ligand.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT wiggly-ligand.lo -MD -MP -MF .deps/wiggly-ligand.Tpo -c wiggly-ligand.cc -o wiggly-ligand.o >/dev/null 2>&1 >mv -f .deps/wiggly-ligand.Tpo .deps/wiggly-ligand.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT monomer-utils.lo -MD -MP -MF .deps/monomer-utils.Tpo -c -o monomer-utils.lo monomer-utils.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT monomer-utils.lo -MD -MP -MF .deps/monomer-utils.Tpo -c monomer-utils.cc -fPIC -DPIC -o .libs/monomer-utils.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT monomer-utils.lo -MD -MP -MF .deps/monomer-utils.Tpo -c monomer-utils.cc -o monomer-utils.o >/dev/null 2>&1 >mv -f .deps/monomer-utils.Tpo .deps/monomer-utils.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT dunbrack.lo -MD -MP -MF .deps/dunbrack.Tpo -c -o dunbrack.lo dunbrack.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT dunbrack.lo -MD -MP -MF .deps/dunbrack.Tpo -c dunbrack.cc -fPIC -DPIC -o .libs/dunbrack.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT dunbrack.lo -MD -MP -MF .deps/dunbrack.Tpo -c dunbrack.cc -o dunbrack.o >/dev/null 2>&1 >mv -f .deps/dunbrack.Tpo .deps/dunbrack.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT chi-angles-autogen.lo -MD -MP -MF .deps/chi-angles-autogen.Tpo -c -o chi-angles-autogen.lo chi-angles-autogen.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT chi-angles-autogen.lo -MD -MP -MF .deps/chi-angles-autogen.Tpo -c chi-angles-autogen.cc -fPIC -DPIC -o .libs/chi-angles-autogen.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT chi-angles-autogen.lo -MD -MP -MF .deps/chi-angles-autogen.Tpo -c chi-angles-autogen.cc -o chi-angles-autogen.o >/dev/null 2>&1 >mv -f .deps/chi-angles-autogen.Tpo .deps/chi-angles-autogen.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT chi-angles.lo -MD -MP -MF .deps/chi-angles.Tpo -c -o chi-angles.lo chi-angles.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT chi-angles.lo -MD -MP -MF .deps/chi-angles.Tpo -c chi-angles.cc -fPIC -DPIC -o .libs/chi-angles.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT chi-angles.lo -MD -MP -MF .deps/chi-angles.Tpo -c chi-angles.cc -o chi-angles.o >/dev/null 2>&1 >mv -f .deps/chi-angles.Tpo .deps/chi-angles.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT helix-placement.lo -MD -MP -MF .deps/helix-placement.Tpo -c -o helix-placement.lo helix-placement.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT helix-placement.lo -MD -MP -MF .deps/helix-placement.Tpo -c helix-placement.cc -fPIC -DPIC -o .libs/helix-placement.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT helix-placement.lo -MD -MP -MF .deps/helix-placement.Tpo -c helix-placement.cc -o helix-placement.o >/dev/null 2>&1 >mv -f .deps/helix-placement.Tpo .deps/helix-placement.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT rigid-body.lo -MD -MP -MF .deps/rigid-body.Tpo -c -o rigid-body.lo rigid-body.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT rigid-body.lo -MD -MP -MF .deps/rigid-body.Tpo -c rigid-body.cc -fPIC -DPIC -o .libs/rigid-body.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT rigid-body.lo -MD -MP -MF .deps/rigid-body.Tpo -c rigid-body.cc -o rigid-body.o >/dev/null 2>&1 >mv -f .deps/rigid-body.Tpo .deps/rigid-body.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT ideal-rna.lo -MD -MP -MF .deps/ideal-rna.Tpo -c -o ideal-rna.lo ideal-rna.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT ideal-rna.lo -MD -MP -MF .deps/ideal-rna.Tpo -c ideal-rna.cc -fPIC -DPIC -o .libs/ideal-rna.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT ideal-rna.lo -MD -MP -MF .deps/ideal-rna.Tpo -c ideal-rna.cc -o ideal-rna.o >/dev/null 2>&1 >mv -f .deps/ideal-rna.Tpo .deps/ideal-rna.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-ligand.la -rpath /usr/lib ligand.lo ligand-extras.lo residue_by_phi_psi.lo wiggly-ligand.lo monomer-utils.lo dunbrack.lo chi-angles-autogen.lo chi-angles.lo helix-placement.lo rigid-body.lo ideal-rna.lo ../ideal/libcoot-ideal.la ../coords/libcoot-coords.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-map-utils.la ../db-main/libcoot-db-main.la ../coot-utils/libcoot-shelx.la ../geometry/libcoot-geometry.la ../coot-utils/libcoot-coord-utils.la ../ccp4mg-utils/libccp4mg-utils.la >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/ligand.o .libs/ligand-extras.o .libs/residue_by_phi_psi.o .libs/wiggly-ligand.o .libs/monomer-utils.o .libs/dunbrack.o .libs/chi-angles-autogen.o .libs/chi-angles.o .libs/helix-placement.o .libs/rigid-body.o .libs/ideal-rna.o -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ideal/.libs -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coords/.libs -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/db-main/.libs -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/geometry/.libs -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ccp4mg-utils/.libs -L/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs ../ideal/.libs/libcoot-ideal.so -L/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs -L/usr/lib -L/usr ../coords/.libs/libcoot-coords.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-map-utils.so ../db-main/.libs/libcoot-db-main.so ../coot-utils/.libs/libcoot-shelx.so ../geometry/.libs/libcoot-geometry.so ../coot-utils/.libs/libcoot-coord-utils.so ../ccp4mg-utils/.libs/libccp4mg-utils.so -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-ligand.so.0 -o .libs/libcoot-ligand.so.0.0.0 >(cd .libs && rm -f libcoot-ligand.so.0 && ln -s libcoot-ligand.so.0.0.0 libcoot-ligand.so.0) >(cd .libs && rm -f libcoot-ligand.so && ln -s libcoot-ligand.so.0.0.0 libcoot-ligand.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-ligand.a ligand.o ligand-extras.o residue_by_phi_psi.o wiggly-ligand.o monomer-utils.o dunbrack.o chi-angles-autogen.o chi-angles.o helix-placement.o rigid-body.o ideal-rna.o >i686-pc-linux-gnu-ranlib .libs/libcoot-ligand.a >creating libcoot-ligand.la >(cd .libs && rm -f libcoot-ligand.la && ln -s ../libcoot-ligand.la libcoot-ligand.la) >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT find-ligand.o -MD -MP -MF .deps/find-ligand.Tpo -c -o find-ligand.o find-ligand.cc >mv -f .deps/find-ligand.Tpo .deps/find-ligand.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o findligand-real find-ligand.o ./libcoot-ligand.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-utils.la ../compat/libcoot-compat.la -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm >i686-pc-linux-gnu-g++ -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/findligand-real find-ligand.o ./.libs/libcoot-ligand.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ideal/.libs/libcoot-ideal.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-extras.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-map-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/db-main/.libs/libcoot-db-main.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/geometry/.libs/libcoot-geometry.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ccp4mg-utils/.libs/libccp4mg-utils.so ../mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so ../coot-utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lrfftw -lfftw -lz -lmmdb /usr/lib/libgsl.so /usr/lib/libgslcblas.so -lm >creating findligand-real >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT find-waters.o -MD -MP -MF .deps/find-waters.Tpo -c -o find-waters.o find-waters.cc >mv -f .deps/find-waters.Tpo .deps/find-waters.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o findwaters-real find-waters.o ./libcoot-ligand.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-utils.la ../compat/libcoot-compat.la -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm >i686-pc-linux-gnu-g++ -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/findwaters-real find-waters.o ./.libs/libcoot-ligand.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ideal/.libs/libcoot-ideal.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-extras.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-map-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/db-main/.libs/libcoot-db-main.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/geometry/.libs/libcoot-geometry.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ccp4mg-utils/.libs/libccp4mg-utils.so ../mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so ../coot-utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lrfftw -lfftw -lz -lmmdb /usr/lib/libgsl.so /usr/lib/libgslcblas.so -lm >creating findwaters-real >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT test-helix-placement.o -MD -MP -MF .deps/test-helix-placement.Tpo -c -o test-helix-placement.o test-helix-placement.cc >mv -f .deps/test-helix-placement.Tpo .deps/test-helix-placement.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o test-helix-placement test-helix-placement.o ./libcoot-ligand.la ../mini-mol/libcoot-mini-mol.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-utils.la ../compat/libcoot-compat.la -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm >i686-pc-linux-gnu-g++ -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/test-helix-placement test-helix-placement.o ./.libs/libcoot-ligand.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ideal/.libs/libcoot-ideal.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-extras.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-map-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/db-main/.libs/libcoot-db-main.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/geometry/.libs/libcoot-geometry.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ccp4mg-utils/.libs/libccp4mg-utils.so ../mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so ../coot-utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lrfftw -lfftw -lz -lmmdb /usr/lib/libgsl.so /usr/lib/libgslcblas.so -lm >creating test-helix-placement >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT test-fffear-in-coot.o -MD -MP -MF .deps/test-fffear-in-coot.Tpo -c -o test-fffear-in-coot.o test-fffear-in-coot.cc >mv -f .deps/test-fffear-in-coot.Tpo .deps/test-fffear-in-coot.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o test-fffear-in-coot test-fffear-in-coot.o ./libcoot-ligand.la ../mini-mol/libcoot-mini-mol.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-map-heavy.la ../coot-utils/libcoot-utils.la ../compat/libcoot-compat.la -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm >i686-pc-linux-gnu-g++ -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/test-fffear-in-coot test-fffear-in-coot.o ./.libs/libcoot-ligand.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ideal/.libs/libcoot-ideal.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-extras.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-map-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/db-main/.libs/libcoot-db-main.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/geometry/.libs/libcoot-geometry.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ccp4mg-utils/.libs/libccp4mg-utils.so ../mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so ../coot-utils/.libs/libcoot-map-heavy.so ../coot-utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lrfftw -lfftw -lz -lmmdb /usr/lib/libgsl.so /usr/lib/libgslcblas.so -lm >creating test-fffear-in-coot >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT testdunbrack.o -MD -MP -MF .deps/testdunbrack.Tpo -c -o testdunbrack.o testdunbrack.cc >mv -f .deps/testdunbrack.Tpo .deps/testdunbrack.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o testdunbrack testdunbrack.o ./libcoot-ligand.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-utils.la -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm >i686-pc-linux-gnu-g++ -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/testdunbrack testdunbrack.o ./.libs/libcoot-ligand.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ideal/.libs/libcoot-ideal.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-extras.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-map-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/db-main/.libs/libcoot-db-main.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/geometry/.libs/libcoot-geometry.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ccp4mg-utils/.libs/libccp4mg-utils.so ../mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so ../coot-utils/.libs/libcoot-utils.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lrfftw -lfftw -lz -lmmdb /usr/lib/libgsl.so /usr/lib/libgslcblas.so -lm >creating testdunbrack >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../ccp4mg-utils -I../mini-mol -I../geometry -I../ideal -I../coords -I../mini-mol -I../coot-utils -I../compat -I../db-main -DHAVE_GSL -I/usr/include -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT test-random.o -MD -MP -MF .deps/test-random.Tpo -c -o test-random.o test-random.cc >mv -f .deps/test-random.Tpo .deps/test-random.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o test-random test-random.o ./libcoot-ligand.la ../mini-mol/libcoot-mini-mol.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-utils.la ../compat/libcoot-compat.la -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm -L/usr/lib -L/usr -lmmdb -lm -L/usr/lib -lgsl -lgslcblas -lm >i686-pc-linux-gnu-g++ -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/test-random test-random.o ./.libs/libcoot-ligand.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ideal/.libs/libcoot-ideal.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-extras.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-map-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/db-main/.libs/libcoot-db-main.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/geometry/.libs/libcoot-geometry.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ccp4mg-utils/.libs/libccp4mg-utils.so ../mini-mol/.libs/libcoot-mini-mol.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so ../coot-utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lrfftw -lfftw -lz -lmmdb /usr/lib/libgsl.so /usr/lib/libgslcblas.so -lm >creating test-random >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ligand' >Making all in high-res >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/high-res' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT high-res.lo -MD -MP -MF .deps/high-res.Tpo -c -o high-res.lo high-res.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT high-res.lo -MD -MP -MF .deps/high-res.Tpo -c high-res.cc -fPIC -DPIC -o .libs/high-res.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT high-res.lo -MD -MP -MF .deps/high-res.Tpo -c high-res.cc -o high-res.o >/dev/null 2>&1 >mv -f .deps/high-res.Tpo .deps/high-res.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-atom-graph.lo -MD -MP -MF .deps/coot-atom-graph.Tpo -c -o coot-atom-graph.lo coot-atom-graph.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-atom-graph.lo -MD -MP -MF .deps/coot-atom-graph.Tpo -c coot-atom-graph.cc -fPIC -DPIC -o .libs/coot-atom-graph.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-atom-graph.lo -MD -MP -MF .deps/coot-atom-graph.Tpo -c coot-atom-graph.cc -o coot-atom-graph.o >/dev/null 2>&1 >mv -f .deps/coot-atom-graph.Tpo .deps/coot-atom-graph.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT residue-distortions.lo -MD -MP -MF .deps/residue-distortions.Tpo -c -o residue-distortions.lo residue-distortions.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT residue-distortions.lo -MD -MP -MF .deps/residue-distortions.Tpo -c residue-distortions.cc -fPIC -DPIC -o .libs/residue-distortions.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT residue-distortions.lo -MD -MP -MF .deps/residue-distortions.Tpo -c residue-distortions.cc -o residue-distortions.o >/dev/null 2>&1 >mv -f .deps/residue-distortions.Tpo .deps/residue-distortions.Plo >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT sequence-assignment.lo -MD -MP -MF .deps/sequence-assignment.Tpo -c -o sequence-assignment.lo sequence-assignment.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT sequence-assignment.lo -MD -MP -MF .deps/sequence-assignment.Tpo -c sequence-assignment.cc -fPIC -DPIC -o .libs/sequence-assignment.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT sequence-assignment.lo -MD -MP -MF .deps/sequence-assignment.Tpo -c sequence-assignment.cc -o sequence-assignment.o >/dev/null 2>&1 >mv -f .deps/sequence-assignment.Tpo .deps/sequence-assignment.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-high-res.la -rpath /usr/lib high-res.lo coot-atom-graph.lo residue-distortions.lo sequence-assignment.lo ../ligand/libcoot-ligand.la ../coot-utils/libcoot-map-utils.la -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm -L/usr/lib -L/usr -lmmdb -lm >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/high-res.o .libs/coot-atom-graph.o .libs/residue-distortions.o .libs/sequence-assignment.o -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ligand/.libs -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs -L/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs ../ligand/.libs/libcoot-ligand.so -L/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ideal/.libs -L/usr/lib -L/usr -L/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coords/.libs -L/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs -L/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/db-main/.libs -L/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/geometry/.libs -L/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ccp4mg-utils/.libs ../coot-utils/.libs/libcoot-map-utils.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so -lccp4c -lrfftw -lfftw -lz -lmmdb -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-high-res.so.0 -o .libs/libcoot-high-res.so.0.0.0 >(cd .libs && rm -f libcoot-high-res.so.0 && ln -s libcoot-high-res.so.0.0.0 libcoot-high-res.so.0) >(cd .libs && rm -f libcoot-high-res.so && ln -s libcoot-high-res.so.0.0.0 libcoot-high-res.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-high-res.a high-res.o coot-atom-graph.o residue-distortions.o sequence-assignment.o >i686-pc-linux-gnu-ranlib .libs/libcoot-high-res.a >creating libcoot-high-res.la >(cd .libs && rm -f libcoot-high-res.la && ln -s ../libcoot-high-res.la libcoot-high-res.la) >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT test-atom-graph.o -MD -MP -MF .deps/test-atom-graph.Tpo -c -o test-atom-graph.o test-atom-graph.cc >mv -f .deps/test-atom-graph.Tpo .deps/test-atom-graph.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o testatomgraph test-atom-graph.o libcoot-high-res.la ../db-main/libcoot-db-main.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-utils.la ../ccp4mg-utils/libccp4mg-utils.la ../compat/libcoot-compat.la -L/usr/lib -lgsl -lgslcblas -lm >i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/testatomgraph test-atom-graph.o ./.libs/libcoot-high-res.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ligand/.libs/libcoot-ligand.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ideal/.libs/libcoot-ideal.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/db-main/.libs/libcoot-db-main.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/geometry/.libs/libcoot-geometry.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ccp4mg-utils/.libs/libccp4mg-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-map-utils.so ../db-main/.libs/libcoot-db-main.so ../ideal/.libs/libcoot-ideal.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-extras.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs/libcoot-mini-mol.so ../mini-mol/.libs/libcoot-mini-mol.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lmmdb -lrfftw -lfftw -lz /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so ../coot-utils/.libs/libcoot-utils.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../compat/.libs/libcoot-compat.so /usr/lib/libgsl.so /usr/lib/libgslcblas.so -lm >creating testatomgraph >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT trace-high-res.o -MD -MP -MF .deps/trace-high-res.Tpo -c -o trace-high-res.o trace-high-res.cc >mv -f .deps/trace-high-res.Tpo .deps/trace-high-res.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o tracehighres trace-high-res.o libcoot-high-res.la ../ideal/libcoot-ideal.la ../db-main/libcoot-db-main.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-utils.la ../compat/libcoot-compat.la ../ccp4mg-utils/libccp4mg-utils.la -L/usr/lib -lgsl -lgslcblas -lm >i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/tracehighres trace-high-res.o ./.libs/libcoot-high-res.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ligand/.libs/libcoot-ligand.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ideal/.libs/libcoot-ideal.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/db-main/.libs/libcoot-db-main.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/geometry/.libs/libcoot-geometry.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ccp4mg-utils/.libs/libccp4mg-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-map-utils.so ../ideal/.libs/libcoot-ideal.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-extras.so ../db-main/.libs/libcoot-db-main.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs/libcoot-mini-mol.so ../mini-mol/.libs/libcoot-mini-mol.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lmmdb -lrfftw -lfftw -lz /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so ../coot-utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so ../ccp4mg-utils/.libs/libccp4mg-utils.so /usr/lib/libgsl.so /usr/lib/libgslcblas.so -lm >creating tracehighres >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT testseqalign.o -MD -MP -MF .deps/testseqalign.Tpo -c -o testseqalign.o testseqalign.cc >mv -f .deps/testseqalign.Tpo .deps/testseqalign.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o testseqalign testseqalign.o libcoot-high-res.la ../ideal/libcoot-ideal.la ../db-main/libcoot-db-main.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-utils.la ../ccp4mg-utils/libccp4mg-utils.la ../compat/libcoot-compat.la -L/usr/lib -lgsl -lgslcblas -lm >i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/testseqalign testseqalign.o ./.libs/libcoot-high-res.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ligand/.libs/libcoot-ligand.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ideal/.libs/libcoot-ideal.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/db-main/.libs/libcoot-db-main.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/geometry/.libs/libcoot-geometry.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ccp4mg-utils/.libs/libccp4mg-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-map-utils.so ../ideal/.libs/libcoot-ideal.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-extras.so ../db-main/.libs/libcoot-db-main.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs/libcoot-mini-mol.so ../mini-mol/.libs/libcoot-mini-mol.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lmmdb -lrfftw -lfftw -lz /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so ../coot-utils/.libs/libcoot-utils.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../compat/.libs/libcoot-compat.so /usr/lib/libgsl.so /usr/lib/libgslcblas.so -lm >creating testseqalign >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT testseqassignment.o -MD -MP -MF .deps/testseqassignment.Tpo -c -o testseqassignment.o testseqassignment.cc >mv -f .deps/testseqassignment.Tpo .deps/testseqassignment.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o testseqassignment testseqassignment.o libcoot-high-res.la ../db-main/libcoot-db-main.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-utils.la ../compat/libcoot-compat.la ../ccp4mg-utils/libccp4mg-utils.la -L/usr/lib -lgsl -lgslcblas -lm >i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/testseqassignment testseqassignment.o ./.libs/libcoot-high-res.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ligand/.libs/libcoot-ligand.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ideal/.libs/libcoot-ideal.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/db-main/.libs/libcoot-db-main.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/geometry/.libs/libcoot-geometry.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ccp4mg-utils/.libs/libccp4mg-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-map-utils.so ../db-main/.libs/libcoot-db-main.so ../ideal/.libs/libcoot-ideal.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-extras.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs/libcoot-mini-mol.so ../mini-mol/.libs/libcoot-mini-mol.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lmmdb -lrfftw -lfftw -lz /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so ../coot-utils/.libs/libcoot-utils.so ../compat/.libs/libcoot-compat.so ../ccp4mg-utils/.libs/libccp4mg-utils.so /usr/lib/libgsl.so /usr/lib/libgslcblas.so -lm >creating testseqassignment >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../geometry -I../coords -I../ccp4mg-utils -I../mini-mol -I../ligand -I../coot-utils -I../compat -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT globularize.o -MD -MP -MF .deps/globularize.Tpo -c -o globularize.o globularize.cc >mv -f .deps/globularize.Tpo .deps/globularize.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o globularize_protein globularize.o libcoot-high-res.la ../db-main/libcoot-db-main.la ../ideal/libcoot-ideal.la ../geometry/libcoot-geometry.la ../coords/libcoot-coords.la ../mini-mol/libcoot-mini-mol.la ../coot-utils/libcoot-coord-extras.la ../coot-utils/libcoot-coord-utils.la ../coot-utils/libcoot-shelx.la ../coot-utils/libcoot-utils.la ../ccp4mg-utils/libccp4mg-utils.la ../compat/libcoot-compat.la -L/usr/lib -lgsl -lgslcblas -lm >i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/globularize_protein globularize.o ./.libs/libcoot-high-res.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ligand/.libs/libcoot-ligand.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ideal/.libs/libcoot-ideal.so -L/usr/lib -L/usr /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/db-main/.libs/libcoot-db-main.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/geometry/.libs/libcoot-geometry.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/ccp4mg-utils/.libs/libccp4mg-utils.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-map-utils.so ../db-main/.libs/libcoot-db-main.so ../ideal/.libs/libcoot-ideal.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-extras.so ../geometry/.libs/libcoot-geometry.so ../coords/.libs/libcoot-coords.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/mini-mol/.libs/libcoot-mini-mol.so ../mini-mol/.libs/libcoot-mini-mol.so ../coot-utils/.libs/libcoot-coord-extras.so ../coot-utils/.libs/libcoot-coord-utils.so ../coot-utils/.libs/libcoot-shelx.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lmmdb -lrfftw -lfftw -lz /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so ../coot-utils/.libs/libcoot-utils.so ../ccp4mg-utils/.libs/libccp4mg-utils.so ../compat/.libs/libcoot-compat.so /usr/lib/libgsl.so /usr/lib/libgslcblas.so -lm >creating globularize_protein >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/high-res' >Making all in build >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/build' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../angles -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT CalphaBuild.lo -MD -MP -MF .deps/CalphaBuild.Tpo -c -o CalphaBuild.lo CalphaBuild.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../angles -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT CalphaBuild.lo -MD -MP -MF .deps/CalphaBuild.Tpo -c CalphaBuild.cc -fPIC -DPIC -o .libs/CalphaBuild.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../angles -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT CalphaBuild.lo -MD -MP -MF .deps/CalphaBuild.Tpo -c CalphaBuild.cc -o CalphaBuild.o >/dev/null 2>&1 >mv -f .deps/CalphaBuild.Tpo .deps/CalphaBuild.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-cabuild.la -rpath /usr/lib CalphaBuild.lo >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/CalphaBuild.o -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-cabuild.so.0 -o .libs/libcoot-cabuild.so.0.0.0 >(cd .libs && rm -f libcoot-cabuild.so.0 && ln -s libcoot-cabuild.so.0.0.0 libcoot-cabuild.so.0) >(cd .libs && rm -f libcoot-cabuild.so && ln -s libcoot-cabuild.so.0.0.0 libcoot-cabuild.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-cabuild.a CalphaBuild.o >i686-pc-linux-gnu-ranlib .libs/libcoot-cabuild.a >creating libcoot-cabuild.la >(cd .libs && rm -f libcoot-cabuild.la && ln -s ../libcoot-cabuild.la libcoot-cabuild.la) >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../angles -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT testcabuild.o -MD -MP -MF .deps/testcabuild.Tpo -c -o testcabuild.o testcabuild.cc >mv -f .deps/testcabuild.Tpo .deps/testcabuild.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o testcabuild testcabuild.o ./libcoot-cabuild.la ../angles/libcoot-AngleInfo.la -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm -L/usr/lib -L/usr -lmmdb -lm >i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/testcabuild testcabuild.o ./.libs/libcoot-cabuild.so ../angles/.libs/libcoot-AngleInfo.so -L/usr/lib /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -L/usr -lrfftw -lfftw -lz -lmmdb -lm >creating testcabuild >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/build' >Making all in analysis >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/analysis' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT bfkurt.lo -MD -MP -MF .deps/bfkurt.Tpo -c -o bfkurt.lo bfkurt.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT bfkurt.lo -MD -MP -MF .deps/bfkurt.Tpo -c bfkurt.cc -fPIC -DPIC -o .libs/bfkurt.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT bfkurt.lo -MD -MP -MF .deps/bfkurt.Tpo -c bfkurt.cc -o bfkurt.o >/dev/null 2>&1 >mv -f .deps/bfkurt.Tpo .deps/bfkurt.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-analysis.la -rpath /usr/lib bfkurt.lo ../coot-utils/libcoot-coord-utils.la >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/bfkurt.o -Wl,--rpath -Wl,/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs -L/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs ../coot-utils/.libs/libcoot-coord-utils.so -L/usr/lib -L/usr -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-analysis.so.0 -o .libs/libcoot-analysis.so.0.0.0 >(cd .libs && rm -f libcoot-analysis.so.0 && ln -s libcoot-analysis.so.0.0.0 libcoot-analysis.so.0) >(cd .libs && rm -f libcoot-analysis.so && ln -s libcoot-analysis.so.0.0.0 libcoot-analysis.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-analysis.a bfkurt.o >i686-pc-linux-gnu-ranlib .libs/libcoot-analysis.a >creating libcoot-analysis.la >(cd .libs && rm -f libcoot-analysis.la && ln -s ../libcoot-analysis.la libcoot-analysis.la) >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../coot-utils -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -O2 -march=prescott -pipe -fomit-frame-pointer -MT bfactan.o -MD -MP -MF .deps/bfactan.Tpo -c -o bfactan.o bfactan.cc >mv -f .deps/bfactan.Tpo .deps/bfactan.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o bfactan bfactan.o libcoot-analysis.la ../coot-utils/libcoot-utils.la ../geometry/libcoot-geometry.la -L/usr/lib -lclipper-ccp4-2 -lclipper-cif-2 -lclipper-phs-2 -lclipper-contrib-2 -lclipper-mmdb-2 -lclipper-cns-2 -lclipper-core-2 -lccp4c -L/usr/lib -L/usr -lmmdb -lm -lrfftw -lfftw -lz -lm -L/usr/lib -L/usr -lmmdb -lm >i686-pc-linux-gnu-g++ -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/bfactan bfactan.o ./.libs/libcoot-analysis.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-coord-utils.so -L/usr/lib -L/usr ../coot-utils/.libs/libcoot-utils.so ../geometry/.libs/libcoot-geometry.so /var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/coot-utils/.libs/libcoot-utils.so /usr/lib/libclipper-ccp4-2.so /usr/lib/libclipper-cif-2.so /usr/lib/libclipper-phs-2.so /usr/lib/libclipper-contrib-2.so /usr/lib/libclipper-mmdb-2.so /usr/lib/libclipper-cns-2.so /usr/lib/libclipper-core-2.so /usr/lib/libsrfftw.so /usr/lib/libsfftw.so -lccp4c -lrfftw -lfftw -lz -lmmdb -lm >creating bfactan >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/analysis' >Making all in sequence-view >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/sequence-view' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I ../coords -I ../coot-utils -I ../src -I ../geometry -I ../mini-mol -I ../build -I ../db-main -I ../angles -I ../ideal -I ../coot-surface -I ../surface -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT sequence-view.lo -MD -MP -MF .deps/sequence-view.Tpo -c -o sequence-view.lo sequence-view.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I ../coords -I ../coot-utils -I ../src -I ../geometry -I ../mini-mol -I ../build -I ../db-main -I ../angles -I ../ideal -I ../coot-surface -I ../surface -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT sequence-view.lo -MD -MP -MF .deps/sequence-view.Tpo -c sequence-view.cc -fPIC -DPIC -o .libs/sequence-view.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I ../coords -I ../coot-utils -I ../src -I ../geometry -I ../mini-mol -I ../build -I ../db-main -I ../angles -I ../ideal -I ../coot-surface -I ../surface -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -MT sequence-view.lo -MD -MP -MF .deps/sequence-view.Tpo -c sequence-view.cc -o sequence-view.o >/dev/null 2>&1 >mv -f .deps/sequence-view.Tpo .deps/sequence-view.Plo >/bin/sh ../libtool --tag=CC --mode=compile i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I ../coords -I ../coot-utils -I ../src -I ../geometry -I ../mini-mol -I ../build -I ../db-main -I ../angles -I ../ideal -I ../coot-surface -I ../surface -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -O2 -march=prescott -pipe -fomit-frame-pointer -MT seq-view-interface.lo -MD -MP -MF .deps/seq-view-interface.Tpo -c -o seq-view-interface.lo seq-view-interface.c > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I ../coords -I ../coot-utils -I ../src -I ../geometry -I ../mini-mol -I ../build -I ../db-main -I ../angles -I ../ideal -I ../coot-surface -I ../surface -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -O2 -march=prescott -pipe -fomit-frame-pointer -MT seq-view-interface.lo -MD -MP -MF .deps/seq-view-interface.Tpo -c seq-view-interface.c -fPIC -DPIC -o .libs/seq-view-interface.o > i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I ../coords -I ../coot-utils -I ../src -I ../geometry -I ../mini-mol -I ../build -I ../db-main -I ../angles -I ../ideal -I ../coot-surface -I ../surface -I/usr/include -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -O2 -march=prescott -pipe -fomit-frame-pointer -MT seq-view-interface.lo -MD -MP -MF .deps/seq-view-interface.Tpo -c seq-view-interface.c -o seq-view-interface.o >/dev/null 2>&1 >mv -f .deps/seq-view-interface.Tpo .deps/seq-view-interface.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DHAVE_GSL -I/usr/include -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-sequence-view.la -rpath /usr/lib sequence-view.lo seq-view-interface.lo >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/sequence-view.o .libs/seq-view-interface.o -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-sequence-view.so.0 -o .libs/libcoot-sequence-view.so.0.0.0 >(cd .libs && rm -f libcoot-sequence-view.so.0 && ln -s libcoot-sequence-view.so.0.0.0 libcoot-sequence-view.so.0) >(cd .libs && rm -f libcoot-sequence-view.so && ln -s libcoot-sequence-view.so.0.0.0 libcoot-sequence-view.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-sequence-view.a sequence-view.o seq-view-interface.o >i686-pc-linux-gnu-ranlib .libs/libcoot-sequence-view.a >creating libcoot-sequence-view.la >(cd .libs && rm -f libcoot-sequence-view.la && ln -s ../libcoot-sequence-view.la libcoot-sequence-view.la) >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/sequence-view' >Making all in tw >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/tw' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c -o tw.lo tw.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c tw.cc -fPIC -DPIC -o .libs/tw.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -MT tw.lo -MD -MP -MF .deps/tw.Tpo -c tw.cc -o tw.o >/dev/null 2>&1 >mv -f .deps/tw.Tpo .deps/tw.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-tw.la -rpath /usr/lib tw.lo -lgtk-x11-2.0 -lgdk-x11-2.0 -latk-1.0 -lgdk_pixbuf-2.0 -lpangocairo-1.0 -lpango-1.0 -lcairo -lgobject-2.0 -lgmodule-2.0 -ldl -lglib-2.0 >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/tw.o /usr/lib/libgtk-x11-2.0.so /usr/lib/libgdk-x11-2.0.so /usr/lib/libatk-1.0.so -L/usr/lib /usr/lib/libgdk_pixbuf-2.0.so /usr/lib/libpangocairo-1.0.so /usr/lib/libpango-1.0.so /usr/lib/libcairo.so /usr/lib/libgobject-2.0.so /usr/lib/libgmodule-2.0.so -ldl /usr/lib/libglib-2.0.so -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-tw.so.0 -o .libs/libcoot-tw.so.0.0.0 >(cd .libs && rm -f libcoot-tw.so.0 && ln -s libcoot-tw.so.0.0.0 libcoot-tw.so.0) >(cd .libs && rm -f libcoot-tw.so && ln -s libcoot-tw.so.0.0.0 libcoot-tw.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-tw.a tw.o >i686-pc-linux-gnu-ranlib .libs/libcoot-tw.a >creating libcoot-tw.la >(cd .libs && rm -f libcoot-tw.la && ln -s ../libcoot-tw.la libcoot-tw.la) >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -MT tiddly.o -MD -MP -MF .deps/tiddly.Tpo -c -o tiddly.o tiddly.cc >mv -f .deps/tiddly.Tpo .deps/tiddly.Po >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DPKGDATADIR='"/usr/share/coot"' -O2 -march=prescott -pipe -fomit-frame-pointer -o coot-tiddly tiddly.o libcoot-tw.la >i686-pc-linux-gnu-g++ -DPKGDATADIR=\"/usr/share/coot\" -O2 -march=prescott -pipe -fomit-frame-pointer -o .libs/coot-tiddly tiddly.o ./.libs/libcoot-tw.so /usr/lib/libgtk-x11-2.0.so /usr/lib/libgdk-x11-2.0.so /usr/lib/libatk-1.0.so /usr/lib/libgdk_pixbuf-2.0.so /usr/lib/libpangocairo-1.0.so /usr/lib/libpangoft2-1.0.so /usr/lib/libpango-1.0.so /usr/lib/libcairo.so /usr/lib/libfontconfig.so /usr/lib/libfreetype.so /usr/lib/libexpat.so /usr/lib/libpng12.so -lz /usr/lib/libXrender.so /usr/lib/libX11.so /usr/lib/libXau.so /usr/lib/libXdmcp.so /usr/lib/libgobject-2.0.so /usr/lib/libgmodule-2.0.so -ldl /usr/lib/libglib-2.0.so >creating coot-tiddly >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/tw' >Making all in src >make[1]: Entering directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/src' >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../compat -I../coords -I../ccp4mg-utils -I../coot-utils -I../intl -I../skeleton -I../angles -I../atom-utils -I../db-main -I../mini-mol -I../ligand -I../sequence-view -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis "-DUSE_GUILE" -DUSE_GUILE_GTK -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -I/usr/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' "-DUSE_GUILE" -DUSE_GUILE_GTK -DUSE_PYTHON -I/usr/include/python2.4 -DHAVE_GSL -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot_wrap_python.lo -MD -MP -MF .deps/coot_wrap_python.Tpo -c -o coot_wrap_python.lo coot_wrap_python.cc >mkdir .libs > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../compat -I../coords -I../ccp4mg-utils -I../coot-utils -I../intl -I../skeleton -I../angles -I../atom-utils -I../db-main -I../mini-mol -I../ligand -I../sequence-view -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -DUSE_GUILE -DUSE_GUILE_GTK -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -I/usr/include -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DUSE_GUILE -DUSE_GUILE_GTK -DUSE_PYTHON -I/usr/include/python2.4 -DHAVE_GSL -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot_wrap_python.lo -MD -MP -MF .deps/coot_wrap_python.Tpo -c coot_wrap_python.cc -fPIC -DPIC -o .libs/coot_wrap_python.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../compat -I../coords -I../ccp4mg-utils -I../coot-utils -I../intl -I../skeleton -I../angles -I../atom-utils -I../db-main -I../mini-mol -I../ligand -I../sequence-view -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -DUSE_GUILE -DUSE_GUILE_GTK -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -I/usr/include -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DUSE_GUILE -DUSE_GUILE_GTK -DUSE_PYTHON -I/usr/include/python2.4 -DHAVE_GSL -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot_wrap_python.lo -MD -MP -MF .deps/coot_wrap_python.Tpo -c coot_wrap_python.cc -o coot_wrap_python.o >/dev/null 2>&1 >mv -f .deps/coot_wrap_python.Tpo .deps/coot_wrap_python.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' "-DUSE_GUILE" -DUSE_GUILE_GTK -DUSE_PYTHON -I/usr/include/python2.4 -DHAVE_GSL -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-wrap-python.la -rpath /usr/lib coot_wrap_python.lo >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/coot_wrap_python.o -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-wrap-python.so.0 -o .libs/libcoot-wrap-python.so.0.0.0 >(cd .libs && rm -f libcoot-wrap-python.so.0 && ln -s libcoot-wrap-python.so.0.0.0 libcoot-wrap-python.so.0) >(cd .libs && rm -f libcoot-wrap-python.so && ln -s libcoot-wrap-python.so.0.0.0 libcoot-wrap-python.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-wrap-python.a coot_wrap_python.o >i686-pc-linux-gnu-ranlib .libs/libcoot-wrap-python.a >creating libcoot-wrap-python.la >(cd .libs && rm -f libcoot-wrap-python.la && ln -s ../libcoot-wrap-python.la libcoot-wrap-python.la) >/bin/sh ../libtool --tag=CXX --mode=compile i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../compat -I../coords -I../ccp4mg-utils -I../coot-utils -I../intl -I../skeleton -I../angles -I../atom-utils -I../db-main -I../mini-mol -I../ligand -I../sequence-view -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis "-DUSE_GUILE" -DUSE_GUILE_GTK -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -I/usr/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' "-DUSE_GUILE" -DUSE_GUILE_GTK -DUSE_PYTHON -I/usr/include/python2.4 -DHAVE_GSL -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot_wrap_guile.lo -MD -MP -MF .deps/coot_wrap_guile.Tpo -c -o coot_wrap_guile.lo coot_wrap_guile.cc > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../compat -I../coords -I../ccp4mg-utils -I../coot-utils -I../intl -I../skeleton -I../angles -I../atom-utils -I../db-main -I../mini-mol -I../ligand -I../sequence-view -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -DUSE_GUILE -DUSE_GUILE_GTK -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -I/usr/include -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DUSE_GUILE -DUSE_GUILE_GTK -DUSE_PYTHON -I/usr/include/python2.4 -DHAVE_GSL -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot_wrap_guile.lo -MD -MP -MF .deps/coot_wrap_guile.Tpo -c coot_wrap_guile.cc -fPIC -DPIC -o .libs/coot_wrap_guile.o > i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../compat -I../coords -I../ccp4mg-utils -I../coot-utils -I../intl -I../skeleton -I../angles -I../atom-utils -I../db-main -I../mini-mol -I../ligand -I../sequence-view -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis -DUSE_GUILE -DUSE_GUILE_GTK -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -I/usr/include -DPKGDATADIR=\"/usr/share/coot\" -DPACKAGE_LOCALE_DIR=\"/usr/share/coot/locale\" -DDATADIR=\"/usr/share\" -DUSE_GUILE -DUSE_GUILE_GTK -DUSE_PYTHON -I/usr/include/python2.4 -DHAVE_GSL -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot_wrap_guile.lo -MD -MP -MF .deps/coot_wrap_guile.Tpo -c coot_wrap_guile.cc -o coot_wrap_guile.o >/dev/null 2>&1 >mv -f .deps/coot_wrap_guile.Tpo .deps/coot_wrap_guile.Plo >/bin/sh ../libtool --tag=CXX --mode=link i686-pc-linux-gnu-g++ -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' "-DUSE_GUILE" -DUSE_GUILE_GTK -DUSE_PYTHON -I/usr/include/python2.4 -DHAVE_GSL -O2 -march=prescott -pipe -fomit-frame-pointer -o libcoot-wrap-guile.la -rpath /usr/lib coot_wrap_guile.lo >i686-pc-linux-gnu-g++ -shared -nostdlib /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crti.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtbeginS.o .libs/coot_wrap_guile.o -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2 -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../../i686-pc-linux-gnu/lib -L/usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/crtendS.o /usr/lib/gcc/i686-pc-linux-gnu/4.1.2/../../../crtn.o -march=prescott -Wl,-soname -Wl,libcoot-wrap-guile.so.0 -o .libs/libcoot-wrap-guile.so.0.0.0 >(cd .libs && rm -f libcoot-wrap-guile.so.0 && ln -s libcoot-wrap-guile.so.0.0.0 libcoot-wrap-guile.so.0) >(cd .libs && rm -f libcoot-wrap-guile.so && ln -s libcoot-wrap-guile.so.0.0.0 libcoot-wrap-guile.so) >i686-pc-linux-gnu-ar cru .libs/libcoot-wrap-guile.a coot_wrap_guile.o >i686-pc-linux-gnu-ranlib .libs/libcoot-wrap-guile.a >creating libcoot-wrap-guile.la >(cd .libs && rm -f libcoot-wrap-guile.la && ln -s ../libcoot-wrap-guile.la libcoot-wrap-guile.la) >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../compat -I../coords -I../ccp4mg-utils -I../coot-utils -I../intl -I../skeleton -I../angles -I../atom-utils -I../db-main -I../mini-mol -I../ligand -I../sequence-view -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis "-DUSE_GUILE" -DUSE_GUILE_GTK -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -I/usr/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' "-DUSE_GUILE" -DUSE_GUILE_GTK -DUSE_PYTHON -I/usr/include/python2.4 -DHAVE_GSL -O2 -march=prescott -pipe -fomit-frame-pointer -MT main.o -MD -MP -MF .deps/main.Tpo -c -o main.o main.cc >mv -f .deps/main.Tpo .deps/main.Po >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../compat -I../coords -I../ccp4mg-utils -I../coot-utils -I../intl -I../skeleton -I../angles -I../atom-utils -I../db-main -I../mini-mol -I../ligand -I../sequence-view -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis "-DUSE_GUILE" -DUSE_GUILE_GTK -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -I/usr/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' "-DUSE_GUILE" -DUSE_GUILE_GTK -DUSE_PYTHON -I/usr/include/python2.4 -DHAVE_GSL -O2 -march=prescott -pipe -fomit-frame-pointer -MT coot-align.o -MD -MP -MF .deps/coot-align.Tpo -c -o coot-align.o coot-align.cc >mv -f .deps/coot-align.Tpo .deps/coot-align.Po >i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../compat -I../coords -I../ccp4mg-utils -I../coot-utils -I../intl -I../skeleton -I../angles -I../atom-utils -I../db-main -I../mini-mol -I../ligand -I../sequence-view -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis "-DUSE_GUILE" -DUSE_GUILE_GTK -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -I/usr/include -DPKGDATADIR='"/usr/share/coot"' "-DUSE_GUILE" -DUSE_GUILE_GTK -DUSE_PYTHON -I/usr/include/python2.4 -O2 -march=prescott -pipe -fomit-frame-pointer -MT c-inner-main.o -MD -MP -MF .deps/c-inner-main.Tpo -c -o c-inner-main.o c-inner-main.c >mv -f .deps/c-inner-main.Tpo .deps/c-inner-main.Po >i686-pc-linux-gnu-gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../compat -I../coords -I../ccp4mg-utils -I../coot-utils -I../intl -I../skeleton -I../angles -I../atom-utils -I../db-main -I../mini-mol -I../ligand -I../sequence-view -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis "-DUSE_GUILE" -DUSE_GUILE_GTK -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -I/usr/include -DPKGDATADIR='"/usr/share/coot"' "-DUSE_GUILE" -DUSE_GUILE_GTK -DUSE_PYTHON -I/usr/include/python2.4 -O2 -march=prescott -pipe -fomit-frame-pointer -MT trackball.o -MD -MP -MF .deps/trackball.Tpo -c -o trackball.o trackball.c >mv -f .deps/trackball.Tpo .deps/trackball.Po >i686-pc-linux-gnu-g++ -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE=\"coot\" -DVERSION=\"0.3.3\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_DLFCN_H=1 -DHAVE_LOCALE_H=1 -DHAVE_LC_MESSAGES=1 -DHAVE_BIND_TEXTDOMAIN_CODESET=1 -DHAVE_GETTEXT=1 -DHAVE_DCGETTEXT=1 -DENABLE_NLS=1 -I. -I../compat -I../coords -I../ccp4mg-utils -I../coot-utils -I../intl -I../skeleton -I../angles -I../atom-utils -I../db-main -I../mini-mol -I../ligand -I../sequence-view -I../geometry -I../ideal -I../coot-surface -I../surface -I../density-contour -I../build -I../high-res -I../analysis "-DUSE_GUILE" -DUSE_GUILE_GTK -DHAVE_GNOME_CANVAS -I/usr/include/libgnomecanvas-2.0 -I/usr/include/pango-1.0 -I/usr/include/freetype2 -I/usr/include/gail-1.0 -I/usr/include/libart-2.0 -I/usr/include/gtk-2.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/atk-1.0 -I/usr/lib/gtk-2.0/include -I/usr/include/cairo -I/usr/include/libpng12 -DCOOT_USE_GTK2_INTERFACE -I/usr/include/gtkglext-1.0 -I/usr/lib/gtkglext-1.0/include -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/cairo -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/atk-1.0 -I/usr/include/gtk-2.0 -I/usr/lib/gtk-2.0/include -I/usr/include/atk-1.0 -I/usr/include/cairo -I/usr/include/pango-1.0 -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -DHAVE_SSMLIB -I/usr/include/ssm -I/usr/include/mmdb -DHAVE_MMDB_IGNORE_HASH -I/usr/include -I/usr/include -DPKGDATADIR='"/usr/share/coot"' -DPACKAGE_LOCALE_DIR='"/usr/share/coot/locale"' -DDATADIR='"/usr/share"' "-DUSE_GUILE" -DUSE_GUILE_GTK -DUSE_PYTHON -I/usr/include/python2.4 -DHAVE_GSL -O2 -march=prescott -pipe -fomit-frame-pointer -MT graphics-info.o -MD -MP -MF .deps/graphics-info.Tpo -c -o graphics-info.o graphics-info.cc >graphics-info.cc:34:29: error: gtkgl/gtkglarea.h: No such file or directory >make[1]: *** [graphics-info.o] Error 1 >make[1]: Leaving directory `/var/tmp/portage/sci-chemistry/coot-0.3.3/work/coot-0.3.3/src' >make: *** [all-recursive] Error 1 > [31;01m*[0m > [31;01m*[0m ERROR: sci-chemistry/coot-0.3.3 failed. > [31;01m*[0m Call stack: > [31;01m*[0m ebuild.sh, line 1701: Called dyn_compile > [31;01m*[0m ebuild.sh, line 1039: Called qa_call 'src_compile' > [31;01m*[0m ebuild.sh, line 44: Called src_compile > [31;01m*[0m coot-0.3.3.ebuild, line 111: Called die > [31;01m*[0m The specific snippet of code: > [31;01m*[0m emake -j1 || die "emake failed" > [31;01m*[0m The die message: > [31;01m*[0m emake failed > [31;01m*[0m > [31;01m*[0m If you need support, post the topmost build error, and the call stack if relevant. > [31;01m*[0m A complete build log is located at '/var/tmp/portage/sci-chemistry/coot-0.3.3/temp/build.log'. > [31;01m*[0m
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