Attachment #131423 for bug #173900

Line 0 Link Here

(-)CHOLMOD_orig/Check/Makefile.am (+5 lines)
	1	AM_CPPFLAGS = -I$(top_srcdir)/Include
	2	noinst_LTLIBRARIES = libcheck.la libcheckl.la
	3	libcheck_la_SOURCES = cholmod_check.c cholmod_read.c cholmod_write.c
	4	libcheckl_la_SOURCES = $(libcheck_la_SOURCES)
	5	libcheckl_la_CFLAGS = -DDLONG




AM_CPPFLAGS = -I$(top_srcdir)/Include
noinst_LTLIBRARIES = libcholesky.la libcholeskyl.la
libcholesky_la_SOURCES = cholmod_amd.c \
  cholmod_analyze.c \
  cholmod_colamd.c \
  cholmod_etree.c \
  cholmod_factorize.c \
  cholmod_postorder.c \
  cholmod_rcond.c \
  cholmod_resymbol.c \
  cholmod_rowcolcounts.c \
  cholmod_rowfac.c \
  cholmod_solve.c \
  cholmod_spsolve.c

libcholeskyl_la_SOURCES = $(libcholesky_la_SOURCES)
libcholeskyl_la_CFLAGS = -DDLONG




AM_CPPFLAGS = -I$(top_srcdir)/Include
noinst_LTLIBRARIES = libcore.la libcorel.la
libcore_la_SOURCES = cholmod_aat.c \
  cholmod_add.c \
  cholmod_band.c \
  cholmod_change_factor.c \
  cholmod_common.c \
  cholmod_complex.c \
  cholmod_copy.c \
  cholmod_dense.c \
  cholmod_error.c \
  cholmod_factor.c \
  cholmod_memory.c \
  cholmod_sparse.c \
  cholmod_transpose.c \
  cholmod_triplet.c

libcorel_la_SOURCES = $(libcore_la_SOURCES)
libcorel_la_CFLAGS = -DDLONG




#===============================================================================
# CHOLMOD/Demo/Makefile
#===============================================================================

# If you compile CHOLMOD with -DNPARTITION, then you do not need METIS or
# CCOLAMD. 

default: all

include ../../UFconfig/UFconfig.mk

#-------------------------------------------------------------------------------
# With METIS, CCOLAMD, CAMD, and the Partition Module:
LIB2 = ../Lib/libcholmod.a ../../AMD/Lib/libamd.a ../../COLAMD/Lib/libcolamd.a \
	../../CCOLAMD/Lib/libccolamd.a ../../CAMD/Lib/libcamd.a \
	$(METIS) $(LAPACK) $(BLAS) $(XERBLA) $(LIB)
# Use this instead, if you compile with -DNPARTITION:
# LIB2 = ../Lib/libcholmod.a ../../AMD/Lib/libamd.a ../../COLAMD/libcolamd.a \
	$(LAPACK) $(BLAS) $(XERBLA) $(LIB)
#-------------------------------------------------------------------------------

C = $(CC) $(CFLAGS) $(CHOLMOD_CONFIG)

code: library cholmod_demo cholmod_l_demo cholmod_simple

fortran: readhb readhb2 reade 

all: code
	./cholmod_demo < Matrix/bcsstk01.tri
	./cholmod_l_demo < Matrix/bcsstk01.tri
	./cholmod_demo < Matrix/lp_afiro.tri
	./cholmod_l_demo < Matrix/lp_afiro.tri
	./cholmod_demo < Matrix/can___24.mtx
	./cholmod_l_demo < Matrix/can___24.mtx
	./cholmod_demo < Matrix/c.tri
	./cholmod_l_demo < Matrix/c.tri
	./cholmod_simple < Matrix/c.tri
	./cholmod_simple < Matrix/can___24.mtx
	./cholmod_simple < Matrix/bcsstk01.tri

distclean: purge

purge: clean
	- $(RM) cholmod_demo cholmod_l_demo readhb readhb2 reade
	- $(RM) cholmod_simple

clean:
	- $(RM) $(CLEAN)

#-------------------------------------------------------------------------------
# See below if you compile with -DNPARTITION
library:
	( cd ../../UFconfig/xerbla ; $(MAKE) )
	( cd ../Lib ; $(MAKE) )
	( cd ../../AMD ; $(MAKE) library )
	( cd ../../CAMD ; $(MAKE) library )
	( cd ../../COLAMD ; $(MAKE) library )
	( cd ../../CCOLAMD ; $(MAKE) library )
# use this rule instead, if you compile with -DNPARTITION:
# library:
# 	( cd ../../UFconfig/xerbla ; $(MAKE) )
# 	( cd ../Lib ; $(MAKE) )
# 	( cd ../../AMD ; $(MAKE) library )
# 	( cd ../../COLAMD ; $(MAKE) )
#-------------------------------------------------------------------------------

I = -I../Include -I../../UFconfig

cholmod_demo: library cholmod_demo.c cholmod_demo.h
	$(C) -o cholmod_demo $(I) cholmod_demo.c $(LIB2)

cholmod_simple: library cholmod_simple.c
	$(C) -o cholmod_simple $(I) cholmod_simple.c $(LIB2)

cholmod_l_demo: library cholmod_l_demo.c cholmod_demo.h
	$(C) -o cholmod_l_demo $(I) cholmod_l_demo.c $(LIB2)

readhb: readhb.f
	$(F77) $(FFLAGS) -o readhb readhb.f

readhb2: readhb2.f
	$(F77) $(FFLAGS) -O -o readhb2 readhb2.f

reade: reade.f
	$(F77) $(FFLAGS) -O -o reade reade.f




AM_CPPFLAGS = -I$(top_srcdir)/Include
AM_LDFLAGS = -L$(top_builddir)/Lib -lcholmod -lamd -lcolamd -lblas -llapack

if ENABLE_METIS
   AM_LDFLAGS += -lcamd -lccolamd -lmetis
endif
check_PROGRAMS = cholmod_demo cholmod_l_demo cholmod_simple
cholmod_demo_SOURCES = cholmod_demo.c
cholmod_l_demo_SOURCES = cholmod_l_demo.c
cholmod_simple_SOURCES = cholmod_simple.c

test: check
	./cholmod_demo < Matrix/bcsstk01.tri || exit 1
	./cholmod_l_demo < Matrix/bcsstk01.tri  || exit 1
	./cholmod_demo < Matrix/lp_afiro.tri || exit 1
	./cholmod_l_demo < Matrix/lp_afiro.tri || exit 1
	./cholmod_demo < Matrix/can___24.mtx || exit 1
	./cholmod_l_demo < Matrix/can___24.mtx || exit 1
	./cholmod_demo < Matrix/c.tri || exit 1
	./cholmod_l_demo < Matrix/c.tri || exit 1
	./cholmod_simple < Matrix/c.tri || exit 1
	./cholmod_simple < Matrix/can___24.mtx || exit 1
	./cholmod_simple < Matrix/bcsstk01.tri || exit 1






default: all

include ../../UFconfig/UFconfig.mk

all: UserGuide.pdf

I = \
	../Include/cholmod.h \
	../Include/cholmod_blas.h \
	../Include/cholmod_check.h \
	../Include/cholmod_cholesky.h \
	../Include/cholmod_complexity.h \
	../Include/cholmod_config.h \
	../Include/cholmod_core.h \
	../Include/cholmod_internal.h \
	../Include/cholmod_matrixops.h \
	../Include/cholmod_modify.h \
	../Include/cholmod_partition.h \
	../Include/cholmod_supernodal.h \
	../Include/cholmod_template.h

C = ../Demo/cholmod_simple.c

M = \
	../MATLAB/analyze.m \
	../MATLAB/bisect.m \
	../MATLAB/chol2.m \
	../MATLAB/cholmod2.m \
	../MATLAB/cholmod_demo.m \
	../MATLAB/cholmod_make.m \
	../MATLAB/etree2.m \
	../MATLAB/graph_demo.m \
	../MATLAB/lchol.m \
	../MATLAB/ldlchol.m \
	../MATLAB/ldl_normest.m \
	../MATLAB/ldlsolve.m \
	../MATLAB/ldlsplit.m \
	../MATLAB/ldlupdate.m \
	../MATLAB/metis.m \
	../MATLAB/nesdis.m \
	../MATLAB/resymbol.m \
	../MATLAB/sdmult.m \
	../MATLAB/sparse2.m \
	../MATLAB/spsym.m \
	../MATLAB/mread.m \
	../MATLAB/mwrite.m \
	../MATLAB/symbfact2.m

UserGuide.pdf: UserGuide.tex UserGuide.bib $(I) $(C) $(M) Makefile getproto rule.awk header.tex footer.tex getmproto mfooter.tex mheader.tex mfile.awk
	./getmproto ../MATLAB/analyze.m > _analyze_m.tex
	./getmproto ../MATLAB/bisect.m > _bisect_m.tex
	./getmproto ../MATLAB/chol2.m > _chol2_m.tex
	./getmproto ../MATLAB/cholmod2.m > _cholmod2_m.tex
	./getmproto ../MATLAB/cholmod_demo.m > _cholmod_demo_m.tex
	./getmproto ../MATLAB/cholmod_make.m > _cholmod_make_m.tex
	./getmproto ../MATLAB/etree2.m > _etree2_m.tex
	./getmproto ../MATLAB/graph_demo.m > _graph_demo_m.tex
	./getmproto ../MATLAB/lchol.m > _lchol_m.tex
	./getmproto ../MATLAB/ldlchol.m > _ldlchol_m.tex
	./getmproto ../MATLAB/ldl_normest.m > _ldl_normest_m.tex
	./getmproto ../MATLAB/ldlsolve.m > _ldlsolve_m.tex
	./getmproto ../MATLAB/ldlsplit.m > _ldlsplit_m.tex
	./getmproto ../MATLAB/ldlupdate.m > _ldlupdate_m.tex
	./getmproto ../MATLAB/metis.m > _metis_m.tex
	./getmproto ../MATLAB/mread.m > _mread_m.tex
	./getmproto ../MATLAB/spsym.m > _spsym_m.tex
	./getmproto ../MATLAB/mwrite.m > _mwrite_m.tex
	./getmproto ../MATLAB/nesdis.m > _nesdis_m.tex
	./getmproto ../MATLAB/resymbol.m > _resymbol_m.tex
	./getmproto ../MATLAB/sdmult.m > _sdmult_m.tex
	./getmproto ../MATLAB/sparse2.m > _sparse2_m.tex
	./getmproto ../MATLAB/symbfact2.m > _symbfact2_m.tex
	./getproto '/include/, /^}/' ../Demo/cholmod_simple.c > _simple.tex
	./getproto '/typedef struct cholmod_common/, /^}/' ../Include/cholmod_core.h > _common.tex
	./getproto '/int cholmod_start/, /\*\) ;/' ../Include/cholmod_core.h > _start.tex
	./getproto '/int cholmod_finish/, /\*\) ;/' ../Include/cholmod_core.h > _finish.tex
	./getproto '/int cholmod_defaults/, /\*\) ;/' ../Include/cholmod_core.h > _defaults.tex
	./getproto '/size_t cholmod_maxrank/, /\*\) ;/' ../Include/cholmod_core.h > _maxrank.tex
	./getproto '/int cholmod_allocate_work/, /\*\) ;/' ../Include/cholmod_core.h > _allocate_work.tex
	./getproto '/int cholmod_free_work/, /\*\) ;/' ../Include/cholmod_core.h > _free_work.tex
	./getproto '/long cholmod_clear_flag/, /\*\) ;/' ../Include/cholmod_core.h > _clear_flag.tex
	./getproto '/int cholmod_error/, /\*\) ;/' ../Include/cholmod_core.h > _error.tex
	./getproto '/double cholmod_dbound/, /\*\) ;/' ../Include/cholmod_core.h > _dbound.tex
	./getproto '/double cholmod_hypot/, /double\) ;/' ../Include/cholmod_core.h > _hypot.tex
	./getproto '/int cholmod_divcomplex/, /\*\) ;/' ../Include/cholmod_core.h > _divcomplex.tex
	./getproto '/typedef struct cholmod_sparse/, /^}/' ../Include/cholmod_core.h > _sparse.tex
	./getproto '/cholmod_sparse \*cholmod_allocate_sparse/, /\*\) ;/' ../Include/cholmod_core.h > _allocate_sparse.tex
	./getproto '/int cholmod_free_sparse/, /\*\) ;/' ../Include/cholmod_core.h > _free_sparse.tex
	./getproto '/int cholmod_reallocate_sparse/, /\*\) ;/' ../Include/cholmod_core.h > _reallocate_sparse.tex
	./getproto '/long cholmod_nnz/, /\*\) ;/' ../Include/cholmod_core.h > _nnz.tex
	./getproto '/cholmod_sparse \*cholmod_speye/, /\*\) ;/' ../Include/cholmod_core.h > _speye.tex
	./getproto '/cholmod_sparse \*cholmod_spzeros/, /\*\) ;/' ../Include/cholmod_core.h > _spzeros.tex
	./getproto '/cholmod_sparse \*cholmod_transpose/, /\*\) ;/' ../Include/cholmod_core.h > _transpose.tex
	./getproto '/int cholmod_transpose_unsym/, /\*\) ;/' ../Include/cholmod_core.h > _transpose_unsym.tex
	./getproto '/int cholmod_transpose_sym/, /\*\) ;/' ../Include/cholmod_core.h > _transpose_sym.tex
	./getproto '/cholmod_sparse \*cholmod_ptranspose/, /\*\) ;/' ../Include/cholmod_core.h > _ptranspose.tex
	./getproto '/int cholmod_sort/, /\*\) ;/' ../Include/cholmod_core.h > _sort.tex
	./getproto '/cholmod_sparse \*cholmod_band/, /\*\) ;/' ../Include/cholmod_core.h > _band.tex
	./getproto '/int cholmod_band_inplace/, /\*\) ;/' ../Include/cholmod_core.h > _band_inplace.tex
	./getproto '/cholmod_sparse \*cholmod_aat/, /\*\) ;/' ../Include/cholmod_core.h > _aat.tex
	./getproto '/cholmod_sparse \*cholmod_copy_sparse/, /\*\) ;/' ../Include/cholmod_core.h > _copy_sparse.tex
	./getproto '/cholmod_sparse \*cholmod_copy /, /\*\) ;/' ../Include/cholmod_core.h > _copy.tex
	./getproto '/cholmod_sparse \*cholmod_add/, /\*\) ;/' ../Include/cholmod_core.h > _add.tex
	./getproto '/int cholmod_sparse_xtype/, /\*\) ;/' ../Include/cholmod_core.h > _sparse_xtype.tex 
	./getproto '/typedef struct cholmod_factor/, /^}/' ../Include/cholmod_core.h > _factor.tex 
	./getproto '/cholmod_factor \*cholmod_allocate_factor/, /\*\) ;/' ../Include/cholmod_core.h > _allocate_factor.tex 
	./getproto '/int cholmod_free_factor/, /\*\) ;/' ../Include/cholmod_core.h > _free_factor.tex 
	./getproto '/int cholmod_reallocate_factor/, /\*\) ;/' ../Include/cholmod_core.h > _reallocate_factor.tex 
	./getproto '/int cholmod_change_factor/, /\*\) ;/' ../Include/cholmod_core.h > _change_factor.tex 
	./getproto '/int cholmod_pack_factor/, /\*\) ;/' ../Include/cholmod_core.h > _pack_factor.tex 
	./getproto '/int cholmod_reallocate_column/, /\*\) ;/' ../Include/cholmod_core.h > _reallocate_column.tex 
	./getproto '/cholmod_sparse \*cholmod_factor_to_sparse/, /\*\) ;/' ../Include/cholmod_core.h > _factor_to_sparse.tex 
	./getproto '/cholmod_factor \*cholmod_copy_factor/, /\*\) ;/' ../Include/cholmod_core.h > _copy_factor.tex 
	./getproto '/int cholmod_factor_xtype/, /\*\) ;/' ../Include/cholmod_core.h > _factor_xtype.tex 
	./getproto '/typedef struct cholmod_dense/, /^}/' ../Include/cholmod_core.h > _dense.tex 
	./getproto '/cholmod_dense \*cholmod_allocate_dense/, /\*\) ;/' ../Include/cholmod_core.h > _allocate_dense.tex 
	./getproto '/cholmod_dense \*cholmod_zeros/, /\*\) ;/' ../Include/cholmod_core.h > _zeros.tex 
	./getproto '/cholmod_dense \*cholmod_ones/, /\*\) ;/' ../Include/cholmod_core.h > _ones.tex 
	./getproto '/cholmod_dense \*cholmod_eye/, /\*\) ;/' ../Include/cholmod_core.h > _eye.tex 
	./getproto '/int cholmod_free_dense/, /\*\) ;/' ../Include/cholmod_core.h > _free_dense.tex 
	./getproto '/cholmod_dense \*cholmod_sparse_to_dense/, /\*\) ;/' ../Include/cholmod_core.h > _sparse_to_dense.tex 
	./getproto '/cholmod_sparse \*cholmod_dense_to_sparse/, /\*\) ;/' ../Include/cholmod_core.h > _dense_to_sparse.tex 
	./getproto '/cholmod_dense \*cholmod_copy_dense/, /\*\) ;/' ../Include/cholmod_core.h > _copy_dense.tex 
	./getproto '/int cholmod_copy_dense2/, /\*\) ;/' ../Include/cholmod_core.h > _copy_dense2.tex 
	./getproto '/int cholmod_dense_xtype/, /\*\) ;/' ../Include/cholmod_core.h > _dense_xtype.tex 
	./getproto '/typedef struct cholmod_triplet/, /^}/' ../Include/cholmod_core.h > _triplet.tex 
	./getproto '/cholmod_triplet \*cholmod_allocate_triplet/, /\*\) ;/' ../Include/cholmod_core.h > _allocate_triplet.tex 
	./getproto '/int cholmod_free_triplet/, /\*\) ;/' ../Include/cholmod_core.h > _free_triplet.tex 
	./getproto '/int cholmod_reallocate_triplet/, /\*\) ;/' ../Include/cholmod_core.h > _reallocate_triplet.tex 
	./getproto '/cholmod_triplet \*cholmod_sparse_to_triplet/, /\*\) ;/' ../Include/cholmod_core.h > _sparse_to_triplet.tex 
	./getproto '/cholmod_sparse \*cholmod_triplet_to_sparse/, /\*\) ;/' ../Include/cholmod_core.h > _triplet_to_sparse.tex 
	./getproto '/cholmod_triplet \*cholmod_copy_triplet/, /\*\) ;/' ../Include/cholmod_core.h > _copy_triplet.tex 
	./getproto '/int cholmod_triplet_xtype/, /\*\) ;/' ../Include/cholmod_core.h > _triplet_xtype.tex 
	./getproto '/void \*cholmod_malloc/, /\*\) ;/' ../Include/cholmod_core.h > _malloc.tex 
	./getproto '/void \*cholmod_calloc/, /\*\) ;/' ../Include/cholmod_core.h > _calloc.tex 
	./getproto '/void \*cholmod_free/, /\*\) ;/' ../Include/cholmod_core.h > _free.tex 
	./getproto '/void \*cholmod_realloc/, /\*\) ;/' ../Include/cholmod_core.h > _realloc.tex 
	./getproto '/int cholmod_realloc_multiple/, /\*\) ;/' ../Include/cholmod_core.h > _realloc_multiple.tex 
	./getproto '/itype defines the/, /define CHOLMOD_SUPERNODAL/' ../Include/cholmod_core.h > _defn.tex 
	./getproto '/int cholmod_check_common/, /\*\) ;/' ../Include/cholmod_check.h > _check_common.tex 
	./getproto '/int cholmod_print_common/, /\*\) ;/' ../Include/cholmod_check.h > _print_common.tex 
	./getproto '/int cholmod_check_sparse/, /\*\) ;/' ../Include/cholmod_check.h > _check_sparse.tex 
	./getproto '/int cholmod_print_sparse/, /\*\) ;/' ../Include/cholmod_check.h > _print_sparse.tex 
	./getproto '/int cholmod_check_dense/, /\*\) ;/' ../Include/cholmod_check.h > _check_dense.tex 
	./getproto '/int cholmod_print_dense/, /\*\) ;/' ../Include/cholmod_check.h > _print_dense.tex 
	./getproto '/int cholmod_check_factor/, /\*\) ;/' ../Include/cholmod_check.h > _check_factor.tex 
	./getproto '/int cholmod_print_factor/, /\*\) ;/' ../Include/cholmod_check.h > _print_factor.tex 
	./getproto '/int cholmod_check_triplet/, /\*\) ;/' ../Include/cholmod_check.h > _check_triplet.tex 
	./getproto '/int cholmod_print_triplet/, /\*\) ;/' ../Include/cholmod_check.h > _print_triplet.tex 
	./getproto '/int cholmod_check_subset/, /\*\) ;/' ../Include/cholmod_check.h > _check_subset.tex 
	./getproto '/int cholmod_print_subset/, /\*\) ;/' ../Include/cholmod_check.h > _print_subset.tex 
	./getproto '/int cholmod_check_perm/, /\*\) ;/' ../Include/cholmod_check.h > _check_perm.tex
	./getproto '/int cholmod_print_perm/, /\*\) ;/' ../Include/cholmod_check.h > _print_perm.tex
	./getproto '/int cholmod_check_parent/, /\*\) ;/' ../Include/cholmod_check.h > _check_parent.tex
	./getproto '/int cholmod_print_parent/, /\*\) ;/' ../Include/cholmod_check.h > _print_parent.tex
	./getproto '/cholmod_triplet \*cholmod_read_triplet/, /\*\) ;/' ../Include/cholmod_check.h > _read_triplet.tex
	./getproto '/cholmod_sparse \*cholmod_read_sparse/, /\*\) ;/' ../Include/cholmod_check.h > _read_sparse.tex
	./getproto '/cholmod_dense \*cholmod_read_dense/, /\*\) ;/' ../Include/cholmod_check.h > _read_dense.tex
	./getproto '/void \*cholmod_read_matrix/, /\*\) ;/' ../Include/cholmod_check.h > _read_matrix.tex
	./getproto '/int cholmod_write_sparse/, /\*\) ;/' ../Include/cholmod_check.h > _write_sparse.tex
	./getproto '/int cholmod_write_dense/, /\*\) ;/' ../Include/cholmod_check.h > _write_dense.tex
	./getproto '/cholmod_factor \*cholmod_analyze /, /\*\) ;/' ../Include/cholmod_cholesky.h > _analyze.tex
	./getproto '/cholmod_factor \*cholmod_analyze_p/, /\*\) ;/' ../Include/cholmod_cholesky.h > _analyze_p.tex
	./getproto '/int cholmod_factorize /, /\*\) ;/' ../Include/cholmod_cholesky.h > _factorize.tex
	./getproto '/int cholmod_factorize_p/, /\*\) ;/' ../Include/cholmod_cholesky.h > _factorize_p.tex
	./getproto '/cholmod_dense \*cholmod_solve/, /\*\) ;/' ../Include/cholmod_cholesky.h > _solve.tex 
	./getproto '/cholmod_sparse \*cholmod_spsolve/, /\*\) ;/' ../Include/cholmod_cholesky.h > _spsolve.tex 
	./getproto '/int cholmod_etree/, /\*\) ;/' ../Include/cholmod_cholesky.h > _etree.tex 
	./getproto '/int cholmod_rowcolcounts/, /\*\) ;/' ../Include/cholmod_cholesky.h > _rowcolcounts.tex 
	./getproto '/int cholmod_analyze_ordering/, /\*\) ;/' ../Include/cholmod_cholesky.h > _analyze_ordering.tex 
	./getproto '/int cholmod_amd/, /\*\) ;/' ../Include/cholmod_cholesky.h > _amd.tex 
	./getproto '/int cholmod_colamd/, /\*\) ;/' ../Include/cholmod_cholesky.h > _colamd.tex 
	./getproto '/int cholmod_rowfac/, /\*\) ;/' ../Include/cholmod_cholesky.h > _rowfac.tex 
	./getproto '/int cholmod_rowfac_mask/, /\*\) ;/' ../Include/cholmod_cholesky.h > _rowfac_mask.tex 
	./getproto '/int cholmod_row_subtree/, /\*\) ;/' ../Include/cholmod_cholesky.h > _row_subtree.tex 
	./getproto '/int cholmod_row_lsubtree/, /\*\) ;/' ../Include/cholmod_cholesky.h > _row_lsubtree.tex 
	./getproto '/int cholmod_resymbol /, /\*\) ;/' ../Include/cholmod_cholesky.h > _resymbol.tex
	./getproto '/int cholmod_resymbol_noperm/, /\*\) ;/' ../Include/cholmod_cholesky.h > _resymbol_noperm.tex 
	./getproto '/double cholmod_rcond/, /\*\) ;/' ../Include/cholmod_cholesky.h > _rcond.tex
	./getproto '/long cholmod_postorder/, /\*\) ;/' ../Include/cholmod_cholesky.h > _postorder.tex
	./getproto '/int cholmod_updown /, /\*\) ;/' ../Include/cholmod_modify.h > _updown.tex
	./getproto '/int cholmod_updown_solve/, /\*\) ;/' ../Include/cholmod_modify.h > _updown_solve.tex
	./getproto '/int cholmod_updown_mark/, /\*\) ;/' ../Include/cholmod_modify.h > _updown_mark.tex
	./getproto '/int cholmod_updown_mask/, /\*\) ;/' ../Include/cholmod_modify.h > _updown_mask.tex
	./getproto '/int cholmod_rowadd /, /\*\) ;/' ../Include/cholmod_modify.h > _rowadd.tex
	./getproto '/int cholmod_rowadd_solve/, /\*\) ;/' ../Include/cholmod_modify.h > _rowadd_solve.tex
	./getproto '/int cholmod_rowadd_mark/, /\*\) ;/' ../Include/cholmod_modify.h > _rowadd_mark.tex
	./getproto '/int cholmod_rowdel /, /\*\) ;/' ../Include/cholmod_modify.h > _rowdel.tex
	./getproto '/int cholmod_rowdel_solve/, /\*\) ;/' ../Include/cholmod_modify.h > _rowdel_solve.tex
	./getproto '/int cholmod_rowdel_mark/, /\*\) ;/' ../Include/cholmod_modify.h > _rowdel_mark.tex
	./getproto '/int cholmod_drop/, /\*\) ;/' ../Include/cholmod_matrixops.h > _drop.tex
	./getproto '/double cholmod_norm_dense/, /\*\) ;/' ../Include/cholmod_matrixops.h > _norm_dense.tex
	./getproto '/double cholmod_norm_sparse/, /\*\) ;/' ../Include/cholmod_matrixops.h > _norm_sparse.tex
	./getproto '/cholmod_sparse \*cholmod_horzcat/, /\*\) ;/' ../Include/cholmod_matrixops.h > _horzcat.tex
	./getproto '/define CHOLMOD_SCALAR/, /\*\) ;/' ../Include/cholmod_matrixops.h > _scale.tex
	./getproto '/int cholmod_sdmult/, /\*\) ;/' ../Include/cholmod_matrixops.h > _sdmult.tex
	./getproto '/cholmod_sparse \*cholmod_ssmult/, /\*\) ;/' ../Include/cholmod_matrixops.h > _ssmult.tex
	./getproto '/cholmod_sparse \*cholmod_submatrix/, /\*\) ;/' ../Include/cholmod_matrixops.h > _submatrix.tex
	./getproto '/cholmod_sparse \*cholmod_vertcat/, /\*\) ;/' ../Include/cholmod_matrixops.h > _vertcat.tex
	./getproto '/int cholmod_symmetry/, /\*\) ;/' ../Include/cholmod_matrixops.h > _symmetry.tex
	./getproto '/int cholmod_super_symbolic/, /\*\) ;/' ../Include/cholmod_supernodal.h > _super_symbolic.tex
	./getproto '/int cholmod_super_numeric/, /\*\) ;/' ../Include/cholmod_supernodal.h > _super_numeric.tex
	./getproto '/int cholmod_super_lsolve/, /\*\) ;/' ../Include/cholmod_supernodal.h > _super_lsolve.tex
	./getproto '/int cholmod_super_ltsolve/, /\*\) ;/' ../Include/cholmod_supernodal.h > _super_ltsolve.tex
	./getproto '/long cholmod_nested_dissection/, /\*\) ;/' ../Include/cholmod_partition.h > _nested_dissection.tex
	./getproto '/int cholmod_metis/, /\*\) ;/' ../Include/cholmod_partition.h > _metis.tex
	./getproto '/int cholmod_ccolamd/, /\*\) ;/' ../Include/cholmod_partition.h > _ccolamd.tex
	./getproto '/int cholmod_camd/, /\*\) ;/' ../Include/cholmod_partition.h > _camd.tex
	./getproto '/int cholmod_csymamd/, /\*\) ;/' ../Include/cholmod_partition.h > _csymamd.tex
	./getproto '/int cholmod_csymamd/, /\*\) ;/' ../Include/cholmod_partition.h > _csymamd.tex
	./getproto '/long cholmod_bisect/, /\*\) ;/' ../Include/cholmod_partition.h > _bisect.tex
	./getproto '/long cholmod_metis_bisector/, /\*\) ;/' ../Include/cholmod_partition.h > _metis_bisector.tex
	./getproto '/long cholmod_collapse_septree/, /\*\) ;/' ../Include/cholmod_partition.h > _collapse_septree.tex
	pdflatex UserGuide
	bibtex UserGuide
	pdflatex UserGuide
	pdflatex UserGuide

distclean: purge

purge: clean
	- $(RM) _temp.awk _*.tex *.dvi *.aux *.log *.lof *.lot *.toc *.bak *.bbl *.blg

clean:
	- $(RM) $(CLEAN)




#===============================================================================
# CHOLOMD/Lib/Makefile: for compiling the CHOLMOD library
#===============================================================================

default: all

ccode: all

include ../../UFconfig/UFconfig.mk

C = $(CC) $(CFLAGS) $(CHOLMOD_CONFIG)

all: libcholmod.a

library: libcholmod.a

purge: distclean

distclean: clean
	- $(RM) libcholmod.a

clean:
	- $(RM) $(CLEAN)

#-------------------------------------------------------------------------------
# ../Include/ directory contains all include files:
#-------------------------------------------------------------------------------

INC =   ../Include/cholmod.h \
	../Include/cholmod_blas.h \
	../Include/cholmod_check.h \
	../Include/cholmod_cholesky.h \
	../Include/cholmod_complexity.h \
	../Include/cholmod_config.h \
	../Include/cholmod_core.h \
	../Include/cholmod_internal.h \
	../Include/cholmod_matrixops.h \
	../Include/cholmod_modify.h \
	../Include/cholmod_partition.h \
	../Include/cholmod_supernodal.h \
	../Include/cholmod_template.h

#-------------------------------------------------------------------------------
# The 7 CHOLMOD library modules (int, double)
#-------------------------------------------------------------------------------

CORE = cholmod_aat.o cholmod_add.o cholmod_band.o \
	cholmod_change_factor.o cholmod_common.o cholmod_complex.o \
	cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o \
	cholmod_memory.o cholmod_sparse.o \
	cholmod_transpose.o cholmod_triplet.o

CHECK = cholmod_check.o cholmod_read.o cholmod_write.o

CHOLESKY = cholmod_amd.o cholmod_analyze.o cholmod_colamd.o \
	cholmod_etree.o cholmod_factorize.o cholmod_postorder.o \
	cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o \
	cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o

MATRIXOPS = cholmod_drop.o cholmod_horzcat.o cholmod_norm.o \
	cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o \
	cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o

PARTITION = cholmod_ccolamd.o cholmod_csymamd.o \
	cholmod_metis.o cholmod_nesdis.o cholmod_camd.o

MODIFY = cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o

SUPERNODAL = cholmod_super_numeric.o cholmod_super_solve.o \
	cholmod_super_symbolic.o

DI = $(CORE) $(CHECK) $(CHOLESKY) $(MATRIXOPS) $(MODIFY) $(SUPERNODAL) \
	$(PARTITION)

#-------------------------------------------------------------------------------
# CHOLMOD library modules (long, double)
#-------------------------------------------------------------------------------

LCORE = cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o \
	cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o \
	cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o \
	cholmod_l_factor.o cholmod_l_memory.o \
	cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o

LCHECK = cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o

LCHOLESKY = cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o \
	cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o \
	cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o \
	cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o

LMATRIXOPS = cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o \
	cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o \
	cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o

LPARTITION = cholmod_l_ccolamd.o cholmod_l_csymamd.o \
	cholmod_l_metis.o cholmod_l_nesdis.o cholmod_l_camd.o

LMODIFY = cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o

LSUPERNODAL = cholmod_l_super_numeric.o cholmod_l_super_solve.o \
	cholmod_l_super_symbolic.o

DL = $(LCORE) $(LCHECK) $(LCHOLESKY) $(LMATRIXOPS) $(LMODIFY) $(LSUPERNODAL) \
	$(LPARTITION)

#-------------------------------------------------------------------------------

# to compile just the double/int version, use OBJ = $(DI)
OBJ = $(DI) $(DL)

libcholmod.a: $(OBJ)
	$(AR) libcholmod.a $(OBJ)
	$(RANLIB) libcholmod.a

$(OBJ): $(INC)

I = -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include \
	-I$(METIS_PATH)/Lib -I../../CCOLAMD/Include -I../../CAMD/Include \
	-I../Include -I../../UFconfig

#-------------------------------------------------------------------------------
# Check Module:
#-------------------------------------------------------------------------------

cholmod_check.o: ../Check/cholmod_check.c
	$(C) -c $(I) $<

cholmod_read.o: ../Check/cholmod_read.c
	$(C) -c $(I) $<

cholmod_write.o: ../Check/cholmod_write.c
	$(C) -c $(I) $<

#-------------------------------------------------------------------------------

cholmod_l_check.o: ../Check/cholmod_check.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_read.o: ../Check/cholmod_read.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_write.o: ../Check/cholmod_write.c
	$(C) -DDLONG -c $(I) $< -o $@


#-------------------------------------------------------------------------------
# Core Module:
#-------------------------------------------------------------------------------

cholmod_common.o: ../Core/cholmod_common.c
	$(C) -c $(I) $<

cholmod_dense.o: ../Core/cholmod_dense.c ../Core/t_cholmod_dense.c
	$(C) -c $(I) $<

cholmod_factor.o: ../Core/cholmod_factor.c
	$(C) -c $(I) $<

cholmod_change_factor.o: ../Core/cholmod_change_factor.c \
	../Core/t_cholmod_change_factor.c
	$(C) -c $(I) $<

cholmod_memory.o: ../Core/cholmod_memory.c
	$(C) -c $(I) $<

cholmod_sparse.o: ../Core/cholmod_sparse.c
	$(C) -c $(I) $<

cholmod_complex.o: ../Core/cholmod_complex.c
	$(C) -c $(I) $<

cholmod_transpose.o: ../Core/cholmod_transpose.c ../Core/t_cholmod_transpose.c
	$(C) -c $(I) $<

cholmod_band.o: ../Core/cholmod_band.c
	$(C) -c $(I) $<

cholmod_copy.o: ../Core/cholmod_copy.c
	$(C) -c $(I) $<

cholmod_triplet.o: ../Core/cholmod_triplet.c ../Core/t_cholmod_triplet.c
	$(C) -c $(I) $<

cholmod_error.o: ../Core/cholmod_error.c
	$(C) -c $(I) $<

cholmod_aat.o: ../Core/cholmod_aat.c
	$(C) -c $(I) $<

cholmod_add.o: ../Core/cholmod_add.c
	$(C) -c $(I) $<

#-------------------------------------------------------------------------------

cholmod_l_common.o: ../Core/cholmod_common.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_dense.o: ../Core/cholmod_dense.c ../Core/t_cholmod_dense.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_factor.o: ../Core/cholmod_factor.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_change_factor.o: ../Core/cholmod_change_factor.c \
	../Core/t_cholmod_change_factor.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_memory.o: ../Core/cholmod_memory.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_sparse.o: ../Core/cholmod_sparse.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_complex.o: ../Core/cholmod_complex.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_transpose.o: ../Core/cholmod_transpose.c ../Core/t_cholmod_transpose.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_band.o: ../Core/cholmod_band.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_copy.o: ../Core/cholmod_copy.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_triplet.o: ../Core/cholmod_triplet.c ../Core/t_cholmod_triplet.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_error.o: ../Core/cholmod_error.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_aat.o: ../Core/cholmod_aat.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_add.o: ../Core/cholmod_add.c
	$(C) -DDLONG -c $(I) $< -o $@


#-------------------------------------------------------------------------------
# Cholesky Module:
#-------------------------------------------------------------------------------

cholmod_amd.o: ../Cholesky/cholmod_amd.c
	$(C) -c $(I) $<

cholmod_analyze.o: ../Cholesky/cholmod_analyze.c
	$(C) -c $(I) $<

cholmod_colamd.o: ../Cholesky/cholmod_colamd.c
	$(C) -c $(I) $<

cholmod_etree.o: ../Cholesky/cholmod_etree.c
	$(C) -c $(I) $<

cholmod_factorize.o: ../Cholesky/cholmod_factorize.c
	$(C) -c $(I) $<

cholmod_postorder.o: ../Cholesky/cholmod_postorder.c
	$(C) -c $(I) $<

cholmod_rcond.o: ../Cholesky/cholmod_rcond.c
	$(C) -c $(I) $<

cholmod_resymbol.o: ../Cholesky/cholmod_resymbol.c
	$(C) -c $(I) $<

cholmod_rowcolcounts.o: ../Cholesky/cholmod_rowcolcounts.c
	$(C) -c $(I) $<

cholmod_solve.o: ../Cholesky/cholmod_solve.c ../Cholesky/t_cholmod_lsolve.c \
	../Cholesky/t_cholmod_ltsolve.c ../Cholesky/t_cholmod_solve.c
	$(C) -c $(I) $<

cholmod_spsolve.o: ../Cholesky/cholmod_spsolve.c
	$(C) -c $(I) $<

cholmod_rowfac.o: ../Cholesky/cholmod_rowfac.c ../Cholesky/t_cholmod_rowfac.c
	$(C) -c $(I) $<

#-------------------------------------------------------------------------------

cholmod_l_amd.o: ../Cholesky/cholmod_amd.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_analyze.o: ../Cholesky/cholmod_analyze.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_colamd.o: ../Cholesky/cholmod_colamd.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_etree.o: ../Cholesky/cholmod_etree.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_factorize.o: ../Cholesky/cholmod_factorize.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_postorder.o: ../Cholesky/cholmod_postorder.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_rcond.o: ../Cholesky/cholmod_rcond.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_resymbol.o: ../Cholesky/cholmod_resymbol.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_rowcolcounts.o: ../Cholesky/cholmod_rowcolcounts.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_solve.o: ../Cholesky/cholmod_solve.c ../Cholesky/t_cholmod_lsolve.c \
	../Cholesky/t_cholmod_ltsolve.c ../Cholesky/t_cholmod_solve.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_spsolve.o: ../Cholesky/cholmod_spsolve.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_rowfac.o: ../Cholesky/cholmod_rowfac.c ../Cholesky/t_cholmod_rowfac.c
	$(C) -DDLONG -c $(I) $< -o $@

#-------------------------------------------------------------------------------
# Partition Module:
#-------------------------------------------------------------------------------

cholmod_ccolamd.o: ../Partition/cholmod_ccolamd.c
	$(C) -c $(I) $<

cholmod_csymamd.o: ../Partition/cholmod_csymamd.c
	$(C) -c $(I) $<

cholmod_camd.o: ../Partition/cholmod_camd.c
	$(C) -c $(I) $<

cholmod_metis.o: ../Partition/cholmod_metis.c
	$(C) -c $(I) $<

cholmod_nesdis.o: ../Partition/cholmod_nesdis.c
	$(C) -c $(I) $<

#-------------------------------------------------------------------------------

cholmod_l_ccolamd.o: ../Partition/cholmod_ccolamd.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_csymamd.o: ../Partition/cholmod_csymamd.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_camd.o: ../Partition/cholmod_camd.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_metis.o: ../Partition/cholmod_metis.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_nesdis.o: ../Partition/cholmod_nesdis.c
	$(C) -DDLONG -c $(I) $< -o $@


#-------------------------------------------------------------------------------
# MatrixOps Module:
#-------------------------------------------------------------------------------

cholmod_horzcat.o: ../MatrixOps/cholmod_horzcat.c
	$(C) -c $(I) $<

cholmod_norm.o: ../MatrixOps/cholmod_norm.c
	$(C) -c $(I) $<

cholmod_scale.o: ../MatrixOps/cholmod_scale.c
	$(C) -c $(I) $<

cholmod_drop.o: ../MatrixOps/cholmod_drop.c
	$(C) -c $(I) $<

cholmod_sdmult.o: ../MatrixOps/cholmod_sdmult.c \
	../MatrixOps/t_cholmod_sdmult.c
	$(C) -c $(I) $<

cholmod_ssmult.o: ../MatrixOps/cholmod_ssmult.c
	$(C) -c $(I) $<

cholmod_submatrix.o: ../MatrixOps/cholmod_submatrix.c
	$(C) -c $(I) $<

cholmod_vertcat.o: ../MatrixOps/cholmod_vertcat.c
	$(C) -c $(I) $<

cholmod_symmetry.o: ../MatrixOps/cholmod_symmetry.c
	$(C) -c $(I) $<

#-------------------------------------------------------------------------------

cholmod_l_horzcat.o: ../MatrixOps/cholmod_horzcat.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_norm.o: ../MatrixOps/cholmod_norm.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_scale.o: ../MatrixOps/cholmod_scale.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_drop.o: ../MatrixOps/cholmod_drop.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_sdmult.o: ../MatrixOps/cholmod_sdmult.c \
	../MatrixOps/t_cholmod_sdmult.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_ssmult.o: ../MatrixOps/cholmod_ssmult.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_submatrix.o: ../MatrixOps/cholmod_submatrix.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_vertcat.o: ../MatrixOps/cholmod_vertcat.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_symmetry.o: ../MatrixOps/cholmod_symmetry.c
	$(C) -DDLONG -c $(I) $< -o $@

#-------------------------------------------------------------------------------
# Modify Module:
#-------------------------------------------------------------------------------

cholmod_rowadd.o: ../Modify/cholmod_rowadd.c
	$(C) -c $(I) $<

cholmod_rowdel.o: ../Modify/cholmod_rowdel.c
	$(C) -c $(I) $<

cholmod_updown.o: ../Modify/cholmod_updown.c \
	../Modify/t_cholmod_updown.c ../Modify/t_cholmod_updown_numkr.c
	$(C) -c $(I) $<

#-------------------------------------------------------------------------------

cholmod_l_rowadd.o: ../Modify/cholmod_rowadd.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_rowdel.o: ../Modify/cholmod_rowdel.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_updown.o: ../Modify/cholmod_updown.c \
	../Modify/t_cholmod_updown.c ../Modify/t_cholmod_updown_numkr.c
	$(C) -DDLONG -c $(I) $< -o $@


#-------------------------------------------------------------------------------
# Supernodal Module:
#-------------------------------------------------------------------------------

cholmod_super_numeric.o: ../Supernodal/cholmod_super_numeric.c \
	../Supernodal/t_cholmod_super_numeric.c
	$(C) -c $(I) $<

cholmod_super_symbolic.o: ../Supernodal/cholmod_super_symbolic.c
	$(C) -c $(I) $<

cholmod_super_solve.o: ../Supernodal/cholmod_super_solve.c \
	../Supernodal/t_cholmod_super_solve.c
	$(C) -c $(I) $<

#-------------------------------------------------------------------------------

cholmod_l_super_numeric.o: ../Supernodal/cholmod_super_numeric.c \
	../Supernodal/t_cholmod_super_numeric.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_super_symbolic.o: ../Supernodal/cholmod_super_symbolic.c
	$(C) -DDLONG -c $(I) $< -o $@

cholmod_l_super_solve.o: ../Supernodal/cholmod_super_solve.c \
	../Supernodal/t_cholmod_super_solve.c
	$(C) -DDLONG -c $(I) $< -o $@




lib_LTLIBRARIES = libcholmod.la
# We're just dumping all the libraries into one, no real source code.
libcholmod_la_SOURCES = 
libcholmod_la_LIBADD = $(top_srcdir)/Check/libcheck.la \
	$(top_srcdir)/Core/libcore.la \
	$(top_srcdir)/MatrixOps/libmops.la \
	$(top_srcdir)/Supernodal/libsnod.la \
	$(top_srcdir)/Modify/libmodify.la \
	$(top_srcdir)/Check/libcheckl.la \
	$(top_srcdir)/Core/libcorel.la \
	$(top_srcdir)/MatrixOps/libmopsl.la \
	$(top_srcdir)/Supernodal/libsnodl.la \
	$(top_srcdir)/Modify/libmodifyl.la \
	$(top_srcdir)/Partition/libpart.la \
	$(top_srcdir)/Partition/libpartl.la \
	$(top_srcdir)/Cholesky/libcholesky.la \
	$(top_srcdir)/Cholesky/libcholeskyl.la 

if ENABLE_METIS
	libcholmod_la_LDFLAGS = -lmetis
endif




#===============================================================================
# CHOLMOD/MATLAB/Makefile
#===============================================================================

default: all

include ../../UFconfig/UFconfig.mk

I = -I. -I../../AMD/Include -I../../COLAMD/Include -I../../CCOLAMD/Include \
    -I../../CAMD/Include -I../Include -I../../UFconfig -I$(METIS_PATH)/Lib

all: mread sdmult ldlsolve resymbol symbfact2 chol2 lchol \
	ldlchol cholmod2 ldlupdate metis bisect nesdis etree2 sparse2 analyze \
	septree spsym mwrite other

MX = $(MEX) $(CHOLMOD_CONFIG) -DDLONG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE $(I)

distclean: purge

purge: clean
	- $(RM) *.mex* *.dll

clean:
	- $(RM) $(CLEAN)

#===============================================================================

AMD_INC = ../../AMD/Include/amd.h ../../AMD/Include/amd_internal.h

AMD = \
	amd_1.o \
	amd_2.o \
	amd_aat.o \
	amd_control.o \
	amd_defaults.o \
	amd_dump.o \
	amd_global.o \
	amd_info.o \
	amd_order.o \
	amd_postorder.o \
	amd_post_tree.o \
	amd_preprocess.o \
	amd_valid.o

amd_1.o: ../../AMD/Source/amd_1.c $(AMD_INC)
	$(MX) -c $<

amd_2.o: ../../AMD/Source/amd_2.c $(AMD_INC)
	$(MX) -c $<

amd_aat.o: ../../AMD/Source/amd_aat.c $(AMD_INC)
	$(MX) -c $<

amd_control.o: ../../AMD/Source/amd_control.c $(AMD_INC)
	$(MX) -c $<

amd_defaults.o: ../../AMD/Source/amd_defaults.c $(AMD_INC)
	$(MX) -c $<

amd_dump.o: ../../AMD/Source/amd_dump.c $(AMD_INC)
	$(MX) -c $<

amd_global.o: ../../AMD/Source/amd_global.c $(AMD_INC)
	$(MX) -c $<

amd_info.o: ../../AMD/Source/amd_info.c $(AMD_INC)
	$(MX) -c $<

amd_order.o: ../../AMD/Source/amd_order.c $(AMD_INC)
	$(MX) -c $<

amd_postorder.o: ../../AMD/Source/amd_postorder.c $(AMD_INC)
	$(MX) -c $<

amd_post_tree.o: ../../AMD/Source/amd_post_tree.c $(AMD_INC)
	$(MX) -c $<

amd_preprocess.o: ../../AMD/Source/amd_preprocess.c $(AMD_INC)
	$(MX) -c $<

amd_valid.o: ../../AMD/Source/amd_valid.c $(AMD_INC)
	$(MX) -c $<

#===============================================================================

CAMD_INC = ../../CAMD/Include/camd.h ../../CAMD/Include/camd_internal.h

CAMD = \
	camd_1.o \
	camd_2.o \
	camd_aat.o \
	camd_control.o \
	camd_defaults.o \
	camd_dump.o \
	camd_global.o \
	camd_info.o \
	camd_order.o \
	camd_postorder.o \
	camd_preprocess.o \
	camd_valid.o

camd_1.o: ../../CAMD/Source/camd_1.c $(CAMD_INC)
	$(MX) -c $<

camd_2.o: ../../CAMD/Source/camd_2.c $(CAMD_INC)
	$(MX) -c $<

camd_aat.o: ../../CAMD/Source/camd_aat.c $(CAMD_INC)
	$(MX) -c $<

camd_control.o: ../../CAMD/Source/camd_control.c $(CAMD_INC)
	$(MX) -c $<

camd_defaults.o: ../../CAMD/Source/camd_defaults.c $(CAMD_INC)
	$(MX) -c $<

camd_dump.o: ../../CAMD/Source/camd_dump.c $(CAMD_INC)
	$(MX) -c $<

camd_global.o: ../../CAMD/Source/camd_global.c $(CAMD_INC)
	$(MX) -c $<

camd_info.o: ../../CAMD/Source/camd_info.c $(CAMD_INC)
	$(MX) -c $<

camd_order.o: ../../CAMD/Source/camd_order.c $(CAMD_INC)
	$(MX) -c $<

camd_postorder.o: ../../CAMD/Source/camd_postorder.c $(CAMD_INC)
	$(MX) -c $<

camd_post_tree.o: ../../CAMD/Source/camd_post_tree.c $(CAMD_INC)
	$(MX) -c $<

camd_preprocess.o: ../../CAMD/Source/camd_preprocess.c $(CAMD_INC)
	$(MX) -c $<

camd_valid.o: ../../CAMD/Source/camd_valid.c $(CAMD_INC)
	$(MX) -c $<

#===============================================================================

COLAMD_INC = ../../COLAMD/Include/colamd.h

COLAMD = colamd.o colamd_global.o

colamd.o: ../../COLAMD/Source/colamd.c $(COLAMD_INC)
	$(MX) -c $<

colamd_global.o: ../../COLAMD/Source/colamd_global.c $(COLAMD_INC)
	$(MX) -c $<

#===============================================================================

CCOLAMD_INC = ../../CCOLAMD/Include/ccolamd.h

CCOLAMD = ccolamd.o ccolamd_global.o

ccolamd.o: ../../CCOLAMD/Source/ccolamd.c $(CCOLAMD_INC)
	$(MX) -c $<

ccolamd_global.o: ../../CCOLAMD/Source/ccolamd_global.c $(CCOLAMD_INC)
	$(MX) -c $<

#===============================================================================

# patch METIS 4.0.1
rename.h: Makefile $(METIS_PATH)/Lib/rename.h
	echo '/* do not edit this file; generated by CHOLMOD/MATLAB/Makefile */' > rename.h
	echo '#undef log2' >> rename.h
	echo '#include "$(METIS_PATH)/Lib/rename.h"' >> rename.h
	echo '#undef log2' >> rename.h
	echo '#define log2 METIS__log2' >> rename.h
	echo '#include "mex.h"' >> rename.h
	echo '#define malloc mxMalloc' >> rename.h
	echo '#define free mxFree' >> rename.h
	echo '#define calloc mxCalloc' >> rename.h
	echo '#define realloc mxRealloc' >> rename.h

METIS_INC = rename.h \
	$(METIS_PATH)/Lib/defs.h \
	$(METIS_PATH)/Lib/macros.h \
	$(METIS_PATH)/Lib/metis.h \
	$(METIS_PATH)/Lib/proto.h \
	$(METIS_PATH)/Lib/rename.h \
	$(METIS_PATH)/Lib/struct.h 

METIS = \
	balance.o \
	bucketsort.o \
	ccgraph.o \
	coarsen.o \
	compress.o \
	debug.o \
	estmem.o \
	fm.o \
	fortran.o \
	frename.o \
	graph.o \
	initpart.o \
	kmetis.o \
	kvmetis.o \
	kwayfm.o \
	kwayrefine.o \
	kwayvolfm.o \
	kwayvolrefine.o \
	match.o \
	mbalance2.o \
	mbalance.o \
	mcoarsen.o \
	memory.o \
	mesh.o \
	meshpart.o \
	mfm2.o \
	mfm.o \
	mincover.o \
	minitpart2.o \
	minitpart.o \
	mkmetis.o \
	mkwayfmh.o \
	mkwayrefine.o \
	mmatch.o \
	mmd.o \
	mpmetis.o \
	mrefine2.o \
	mrefine.o \
	mutil.o \
	myqsort.o \
	ometis.o \
	parmetis.o \
	pmetis.o \
	pqueue.o \
	refine.o \
	separator.o \
	sfm.o \
	srefine.o \
	stat.o \
	subdomains.o \
	timing.o \
	util.o

balance.o: $(METIS_PATH)/Lib/balance.c $(METIS_INC)
	$(MX) -c $<

bucketsort.o: $(METIS_PATH)/Lib/bucketsort.c $(METIS_INC)
	$(MX) -c $<

ccgraph.o: $(METIS_PATH)/Lib/ccgraph.c $(METIS_INC)
	$(MX) -c $<

coarsen.o: $(METIS_PATH)/Lib/coarsen.c $(METIS_INC)
	$(MX) -c $<

compress.o: $(METIS_PATH)/Lib/compress.c $(METIS_INC)
	$(MX) -c $<

debug.o: $(METIS_PATH)/Lib/debug.c $(METIS_INC)
	$(MX) -c $<

estmem.o: $(METIS_PATH)/Lib/estmem.c $(METIS_INC)
	$(MX) -c $<

fm.o: $(METIS_PATH)/Lib/fm.c $(METIS_INC)
	$(MX) -c $<

fortran.o: $(METIS_PATH)/Lib/fortran.c $(METIS_INC)
	$(MX) -c $<

frename.o: $(METIS_PATH)/Lib/frename.c $(METIS_INC)
	$(MX) -c $<

graph.o: $(METIS_PATH)/Lib/graph.c $(METIS_INC)
	$(MX) -c $<

initpart.o: $(METIS_PATH)/Lib/initpart.c $(METIS_INC)
	$(MX) -c $<

kmetis.o: $(METIS_PATH)/Lib/kmetis.c $(METIS_INC)
	$(MX) -c $<

kvmetis.o: $(METIS_PATH)/Lib/kvmetis.c $(METIS_INC)
	$(MX) -c $<

kwayfm.o: $(METIS_PATH)/Lib/kwayfm.c $(METIS_INC)
	$(MX) -c $<

kwayrefine.o: $(METIS_PATH)/Lib/kwayrefine.c $(METIS_INC)
	$(MX) -c $<

kwayvolfm.o: $(METIS_PATH)/Lib/kwayvolfm.c $(METIS_INC)
	$(MX) -c $<

kwayvolrefine.o: $(METIS_PATH)/Lib/kwayvolrefine.c $(METIS_INC)
	$(MX) -c $<

match.o: $(METIS_PATH)/Lib/match.c $(METIS_INC)
	$(MX) -c $<

mbalance2.o: $(METIS_PATH)/Lib/mbalance2.c $(METIS_INC)
	$(MX) -c $<

mbalance.o: $(METIS_PATH)/Lib/mbalance.c $(METIS_INC)
	$(MX) -c $<

mcoarsen.o: $(METIS_PATH)/Lib/mcoarsen.c $(METIS_INC)
	$(MX) -c $<

memory.o: $(METIS_PATH)/Lib/memory.c $(METIS_INC)
	$(MX) -c $<

mesh.o: $(METIS_PATH)/Lib/mesh.c $(METIS_INC)
	$(MX) -c $<

meshpart.o: $(METIS_PATH)/Lib/meshpart.c $(METIS_INC)
	$(MX) -c $<

mfm2.o: $(METIS_PATH)/Lib/mfm2.c $(METIS_INC)
	$(MX) -c $<

mfm.o: $(METIS_PATH)/Lib/mfm.c $(METIS_INC)
	$(MX) -c $<

mincover.o: $(METIS_PATH)/Lib/mincover.c $(METIS_INC)
	$(MX) -c $<

minitpart2.o: $(METIS_PATH)/Lib/minitpart2.c $(METIS_INC)
	$(MX) -c $<

minitpart.o: $(METIS_PATH)/Lib/minitpart.c $(METIS_INC)
	$(MX) -c $<

mkmetis.o: $(METIS_PATH)/Lib/mkmetis.c $(METIS_INC)
	$(MX) -c $<

mkwayfmh.o: $(METIS_PATH)/Lib/mkwayfmh.c $(METIS_INC)
	$(MX) -c $<

mkwayrefine.o: $(METIS_PATH)/Lib/mkwayrefine.c $(METIS_INC)
	$(MX) -c $<

mmatch.o: $(METIS_PATH)/Lib/mmatch.c $(METIS_INC)
	$(MX) -c $<

mmd.o: $(METIS_PATH)/Lib/mmd.c $(METIS_INC)
	$(MX) -c $<

mpmetis.o: $(METIS_PATH)/Lib/mpmetis.c $(METIS_INC)
	$(MX) -c $<

mrefine2.o: $(METIS_PATH)/Lib/mrefine2.c $(METIS_INC)
	$(MX) -c $<

mrefine.o: $(METIS_PATH)/Lib/mrefine.c $(METIS_INC)
	$(MX) -c $<

mutil.o: $(METIS_PATH)/Lib/mutil.c $(METIS_INC)
	$(MX) -c $<

myqsort.o: $(METIS_PATH)/Lib/myqsort.c $(METIS_INC)
	$(MX) -c $<

ometis.o: $(METIS_PATH)/Lib/ometis.c $(METIS_INC)
	$(MX) -c $<

parmetis.o: $(METIS_PATH)/Lib/parmetis.c $(METIS_INC)
	$(MX) -c $<

pmetis.o: $(METIS_PATH)/Lib/pmetis.c $(METIS_INC)
	$(MX) -c $<

pqueue.o: $(METIS_PATH)/Lib/pqueue.c $(METIS_INC)
	$(MX) -c $<

refine.o: $(METIS_PATH)/Lib/refine.c $(METIS_INC)
	$(MX) -c $<

separator.o: $(METIS_PATH)/Lib/separator.c $(METIS_INC)
	$(MX) -c $<

sfm.o: $(METIS_PATH)/Lib/sfm.c $(METIS_INC)
	$(MX) -c $<

srefine.o: $(METIS_PATH)/Lib/srefine.c $(METIS_INC)
	$(MX) -c $<

stat.o: $(METIS_PATH)/Lib/stat.c $(METIS_INC)
	$(MX) -c $<

subdomains.o: $(METIS_PATH)/Lib/subdomains.c $(METIS_INC)
	$(MX) -c $<

timing.o: $(METIS_PATH)/Lib/timing.c $(METIS_INC)
	$(MX) -c $<

util.o: $(METIS_PATH)/Lib/util.c $(METIS_INC)
	$(MX) -c $<

#===============================================================================

CHOLMOD_INC = \
	cholmod_matlab.h \
	../Include/cholmod_blas.h \
	../Include/cholmod_check.h \
	../Include/cholmod_cholesky.h \
	../Include/cholmod_complexity.h \
	../Include/cholmod_config.h \
	../Include/cholmod_core.h \
	../Include/cholmod.h \
	../Include/cholmod_internal.h \
	../Include/cholmod_io64.h \
	../Include/cholmod_matrixops.h \
	../Include/cholmod_modify.h \
	../Include/cholmod_partition.h \
	../Include/cholmod_supernodal.h \
	../Include/cholmod_template.h

CHOLMOD = \
	cholmod_matlab.o \
	cholmod_check.o \
	cholmod_read.o \
	cholmod_write.o \
	cholmod_amd.o \
	cholmod_analyze.o \
	cholmod_colamd.o \
	cholmod_etree.o \
	cholmod_factorize.o \
	cholmod_postorder.o \
	cholmod_rcond.o \
	cholmod_resymbol.o \
	cholmod_rowcolcounts.o \
	cholmod_rowfac.o \
	cholmod_solve.o \
	cholmod_spsolve.o \
	cholmod_aat.o \
	cholmod_add.o \
	cholmod_band.o \
	cholmod_change_factor.o \
	cholmod_common.o \
	cholmod_complex.o \
	cholmod_copy.o \
	cholmod_dense.o \
	cholmod_error.o \
	cholmod_factor.o \
	cholmod_memory.o \
	cholmod_sparse.o \
	cholmod_transpose.o \
	cholmod_triplet.o \
	cholmod_drop.o \
	cholmod_horzcat.o \
	cholmod_norm.o \
	cholmod_scale.o \
	cholmod_sdmult.o \
	cholmod_ssmult.o \
	cholmod_submatrix.o \
	cholmod_symmetry.o \
	cholmod_vertcat.o \
	cholmod_rowadd.o \
	cholmod_rowdel.o \
	cholmod_updown.o \
	cholmod_camd.o \
	cholmod_ccolamd.o \
	cholmod_csymamd.o \
	cholmod_metis.o \
	cholmod_nesdis.o \
	cholmod_super_numeric.o \
	cholmod_super_solve.o \
	cholmod_super_symbolic.o

cholmod_matlab.o: cholmod_matlab.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_check.o: ../Check/cholmod_check.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_read.o: ../Check/cholmod_read.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_write.o: ../Check/cholmod_write.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_amd.o: ../Cholesky/cholmod_amd.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_analyze.o: ../Cholesky/cholmod_analyze.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_colamd.o: ../Cholesky/cholmod_colamd.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_etree.o: ../Cholesky/cholmod_etree.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_factorize.o: ../Cholesky/cholmod_factorize.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_postorder.o: ../Cholesky/cholmod_postorder.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_rcond.o: ../Cholesky/cholmod_rcond.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_resymbol.o: ../Cholesky/cholmod_resymbol.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_rowcolcounts.o: ../Cholesky/cholmod_rowcolcounts.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_rowfac.o: ../Cholesky/cholmod_rowfac.c \
	../Cholesky/t_cholmod_rowfac.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_solve.o: ../Cholesky/cholmod_solve.c \
	../Cholesky/t_cholmod_lsolve.c \
	../Cholesky/t_cholmod_ltsolve.c \
	../Cholesky/t_cholmod_solve.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_spsolve.o: ../Cholesky/cholmod_spsolve.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_aat.o: ../Core/cholmod_aat.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_add.o: ../Core/cholmod_add.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_band.o: ../Core/cholmod_band.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_change_factor.o: ../Core/cholmod_change_factor.c \
	../Core/t_cholmod_change_factor.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_common.o: ../Core/cholmod_common.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_complex.o: ../Core/cholmod_complex.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_copy.o: ../Core/cholmod_copy.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_dense.o: ../Core/cholmod_dense.c \
	../Core/t_cholmod_dense.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_error.o: ../Core/cholmod_error.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_factor.o: ../Core/cholmod_factor.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_memory.o: ../Core/cholmod_memory.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_sparse.o: ../Core/cholmod_sparse.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_transpose.o: ../Core/cholmod_transpose.c \
	../Core/t_cholmod_transpose.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_triplet.o: ../Core/cholmod_triplet.c \
	../Core/t_cholmod_triplet.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_drop.o: ../MatrixOps/cholmod_drop.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_horzcat.o: ../MatrixOps/cholmod_horzcat.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_norm.o: ../MatrixOps/cholmod_norm.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_scale.o: ../MatrixOps/cholmod_scale.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_sdmult.o: ../MatrixOps/cholmod_sdmult.c \
	../MatrixOps/t_cholmod_sdmult.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_ssmult.o: ../MatrixOps/cholmod_ssmult.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_submatrix.o: ../MatrixOps/cholmod_submatrix.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_symmetry.o: ../MatrixOps/cholmod_symmetry.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_vertcat.o: ../MatrixOps/cholmod_vertcat.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_rowadd.o: ../Modify/cholmod_rowadd.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_rowdel.o: ../Modify/cholmod_rowdel.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_updown.o: ../Modify/cholmod_updown.c \
	../Modify/t_cholmod_updown.c \
	../Modify/t_cholmod_updown_numkr.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_camd.o: ../Partition/cholmod_camd.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_ccolamd.o: ../Partition/cholmod_ccolamd.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_csymamd.o: ../Partition/cholmod_csymamd.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_metis.o: ../Partition/cholmod_metis.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_nesdis.o: ../Partition/cholmod_nesdis.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_super_numeric.o: ../Supernodal/cholmod_super_numeric.c \
	../Supernodal/t_cholmod_super_numeric.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_super_solve.o: ../Supernodal/cholmod_super_solve.c \
	../Supernodal/t_cholmod_super_solve.c $(CHOLMOD_INC)
	$(MX) -c $<

cholmod_super_symbolic.o: ../Supernodal/cholmod_super_symbolic.c $(CHOLMOD_INC)
	$(MX) -c $<


#===============================================================================

OBJ = $(AMD) $(CAMD) $(COLAMD) $(CCOLAMD) $(METIS) $(CHOLMOD)

analyze: analyze.c $(OBJ)
	$(MX) analyze.c $(OBJ)

mread: mread.c $(OBJ)
	$(MX) mread.c $(OBJ)

mwrite: mwrite.c $(OBJ)
	$(MX) mwrite.c $(OBJ)

spsym: spsym.c $(OBJ)
	$(MX) spsym.c $(OBJ)

chol2: chol2.c $(OBJ)
	$(MX) chol2.c $(OBJ)

lchol: lchol.c $(OBJ)
	$(MX) lchol.c $(OBJ)

ldlchol: ldlchol.c $(OBJ)
	$(MX) ldlchol.c $(OBJ)

ldlupdate: ldlupdate.c $(OBJ)
	$(MX) ldlupdate.c $(OBJ)

ldlsolve: ldlsolve.c $(OBJ)
	$(MX) ldlsolve.c $(OBJ)

sdmult: sdmult.c $(OBJ)
	$(MX) sdmult.c $(OBJ)

resymbol: resymbol.c $(OBJ)
	$(MX) resymbol.c $(OBJ)

cholmod2: cholmod2.c $(OBJ)
	$(MX) cholmod2.c $(OBJ)

nesdis: nesdis.c $(OBJ)
	$(MX) nesdis.c $(OBJ)

septree: septree.c $(OBJ)
	$(MX) septree.c $(OBJ)

metis: metis.c $(OBJ)
	$(MX) metis.c $(OBJ)

etree2: etree2.c $(OBJ)
	$(MX) etree2.c $(OBJ)

bisect: bisect.c $(OBJ)
	$(MX) bisect.c $(OBJ)

symbfact2: symbfact2.c $(OBJ) 
	$(MX) symbfact2.c $(OBJ)

sparse2: sparse2.c $(OBJ) 
	$(MX) sparse2.c $(OBJ)

#-------------------------------------------------------------------------------

other:
	( cd ../../AMD ; $(MAKE) mex )
	( cd ../../CAMD ; $(MAKE) mex )
	( cd ../../COLAMD ; $(MAKE) mex )
	( cd ../../CCOLAMD ; $(MAKE) mex )




#-------------------------------------------------------------------------------
# CHOLMOD Makefile
#-------------------------------------------------------------------------------

# Note: If you do not have METIS, or do not wish to use it in CHOLMOD, you must
# compile CHOLMOD with the -DNPARTITION flag.  See ../UFconfig/UFconfig.mk.

default: all

include ../UFconfig/UFconfig.mk

# Compile the C-callable libraries and the Demo programs.
all:
	( cd Lib ; $(MAKE) )
	( cd Demo ; $(MAKE) )

# Compile the C-callable libraries only.
library:
	( cd Lib ; $(MAKE) )

# Remove all files not in the original distribution
purge:
	( cd MATLAB ; $(MAKE) purge )
	( cd Tcov ; $(MAKE) purge )
	( cd Lib ; $(MAKE) purge )
#	( cd Valgrind ; $(MAKE) purge )
	( cd Demo ; $(MAKE) purge )
	( cd Doc ; $(MAKE) purge )

# Remove all files not in the original distribution, except keep the 
# compiled libraries.
clean:
	( cd MATLAB ; $(MAKE) clean )
	( cd Tcov ; $(MAKE) clean )
	( cd Lib ; $(MAKE) clean )
	( cd Valgrind ; $(MAKE) clean )
	( cd Demo ; $(MAKE) clean )

distclean: purge

ccode: all

# Compile the MATLAB mexFunctions (you can also use cholmod_make.m in MATLAB)
mex:
	( cd MATLAB ; $(MAKE) )

# Run the test coverage suite.  Takes about 40 minutes on a 3.2GHz Pentium.
# Requires Linux (gcc, gcov).
cov:
	( cd Tcov ; $(MAKE) go )

# Run the test coverage suite using Valgrind.  This takes a *** long *** time.
valgrind:
	( cd Valgrind ; $(MAKE) )

# Compile the C-callable libraries and the Demo programs.
demo:
	( cd Demo ; $(MAKE) )





SUBDIRS = Check Cholesky Core MatrixOps Modify Partition Supernodal Demo Lib
EXTRA_DIST = README.txt
include_HEADERS = Include/cholmod.h \
 Include/cholmod_blas.h \
 Include/cholmod_check.h \
 Include/cholmod_cholesky.h \
 Include/cholmod_complexity.h \
 Include/cholmod_config.h \
 Include/cholmod_core.h \
 Include/cholmod_internal.h \
 Include/cholmod_io64.h \
 Include/cholmod_matrixops.h \
 Include/cholmod_modify.h \
 Include/cholmod_partition.h \
 Include/cholmod_supernodal.h \
 Include/cholmod_template.h






AM_CPPFLAGS = -I$(top_srcdir)/Include
noinst_LTLIBRARIES = libmops.la libmopsl.la
libmops_la_SOURCES = cholmod_drop.c \
  cholmod_horzcat.c \
  cholmod_norm.c \
  cholmod_scale.c \
  cholmod_sdmult.c \
  cholmod_ssmult.c \
  cholmod_submatrix.c \
  cholmod_symmetry.c \
  cholmod_vertcat.c

libmopsl_la_SOURCES = $(libmops_la_SOURCES)
libmopsl_la_CFLAGS = -DDLONG

Line 0 Link Here

(-)CHOLMOD_orig/Modify/Makefile.am (+5 lines)
	1	AM_CPPFLAGS = -I$(top_srcdir)/Include
	2	noinst_LTLIBRARIES = libmodify.la libmodifyl.la
	3	libmodify_la_SOURCES = cholmod_rowadd.c cholmod_updown.c cholmod_rowdel.c
	4	libmodifyl_la_SOURCES = $(libmodify_la_SOURCES)
	5	libmodifyl_la_CFLAGS = -DDLONG

Line 0 Link Here

(-)CHOLMOD_orig/Partition/Makefile.am (+7 lines)
	1	AM_CPPFLAGS = -I$(top_srcdir)/Include
	2	noinst_LTLIBRARIES = libpart.la libpartl.la
	3	libpart_la_SOURCES = cholmod_camd.c cholmod_csymamd.c cholmod_nesdis.c cholmod_ccolamd.c cholmod_metis.c
	4
	5
	6	libpartl_la_SOURCES = $(libpart_la_SOURCES)
	7	libpartl_la_CFLAGS = -DDLONG

Line 0 Link Here

(-)CHOLMOD_orig/Supernodal/Makefile.am (+5 lines)
	1	AM_CPPFLAGS = -I$(top_srcdir)/Include
	2	noinst_LTLIBRARIES = libsnod.la libsnodl.la
	3	libsnod_la_SOURCES = cholmod_super_numeric.c cholmod_super_symbolic.c cholmod_super_solve.c
	4	libsnodl_la_SOURCES = $(libsnod_la_SOURCES)
	5	libsnodl_la_CFLAGS = -DDLONG




#===============================================================================
# CHOLMOD/Tcov/Makefile
#===============================================================================

# If you compile CHOLMOD with -DNPARTITION, then you do not need METIS,
# CCOLAMD, or the Partition module.

include ../../UFconfig/UFconfig.mk
include Make.inc

# Tcov requires gcc
CC = gcc

C = $(CC) $(CFLAGS) $(CHOLMOD_CONFIG) $(NANTESTS)

# optimized LAPACK and BLAS
# LIB = $(METIS) -lm $(LAPACK) $(BLAS) $(XERBLA)

# LAPACK and the Fortran reference BLAS, compiled with gfortran -g -O:
# LIB = $(METIS) -lm -llapack_plain -lblas_plain -lg2c
LIB = $(METIS) -lm -llapack_plain -lblas_plain -lgfortran -lgfortranbegin
LIB = $(METIS) -lm -llapack -lblas -lgfortran -lgfortranbegin

# Solaris
# LIB = $(METIS) -xlic_lib=sunperf

# Use "grep" only, if you do not have "indent"
PRETTY = grep -v "^\#" | indent -bl -nce -ss -bli0 -i4 -sob -l120
# PRETTY = grep -v "^\#" | ssh persimmon indent -bl -nce -ss -bli0 -i4 -sob -l120
# PRETTY = grep -v "^\#"

I = -I../../AMD/Include -I../../COLAMD/Include \
	-I$(METIS_PATH)/Lib -I../../CCOLAMD/Include -I../../CAMD/Include \
	-I../Include -I../../UFconfig

default: cm cl z_demo l_demo cmread clread

TEST = cm.c test_ops.c null.c null2.c lpdemo.c memory.c solve.c aug.c unpack.c \
	raw_factor.c cctest.c ctest.c amdtest.c camdtest.c huge.c

INC =   ../Include/cholmod.h \
	../Include/cholmod_blas.h \
	../Include/cholmod_check.h \
	../Include/cholmod_cholesky.h \
	../Include/cholmod_complexity.h \
	../Include/cholmod_config.h \
	../Include/cholmod_core.h \
	../Include/cholmod_internal.h \
	../Include/cholmod_matrixops.h \
	../Include/cholmod_modify.h \
	../Include/cholmod_partition.h \
	../Include/cholmod_supernodal.h \
	../Include/cholmod_template.h

AMDSRC = ../../AMD/Source/amd_1.c \
	../../AMD/Source/amd_2.c \
	../../AMD/Source/amd_aat.c \
	../../AMD/Source/amd_control.c \
	../../AMD/Source/amd_defaults.c \
	../../AMD/Source/amd_global.c \
	../../AMD/Source/amd_info.c \
	../../AMD/Source/amd_order.c \
	../../AMD/Source/amd_postorder.c \
	../../AMD/Source/amd_post_tree.c \
	../../AMD/Source/amd_preprocess.c \
	../../AMD/Source/amd_valid.c \
	../../AMD/Include/amd.h \
	../../AMD/Include/amd_internal.h

AMDOBJ = \
	zz_amd_1.o \
	zz_amd_2.o \
	zz_amd_aat.o \
	zz_amd_control.o \
	zz_amd_defaults.o \
	zz_amd_global.o \
	zz_amd_info.o \
	zz_amd_dump.o \
	zz_amd_order.o \
	zz_amd_postorder.o \
	zz_amd_post_tree.o \
	zz_amd_preprocess.o \
	zz_amd_valid.o

LAMDOBJ = \
	zl_amd_1.o \
	zl_amd_2.o \
	zl_amd_aat.o \
	zl_amd_control.o \
	zl_amd_defaults.o \
	zl_amd_global.o \
	zl_amd_info.o \
	zl_amd_dump.o \
	zl_amd_order.o \
	zl_amd_postorder.o \
	zl_amd_post_tree.o \
	zl_amd_preprocess.o \
	zl_amd_valid.o

COLAMDSRC = ../../COLAMD/Source/colamd.c ../../COLAMD/Source/colamd_global.c

COLAMDOBJ = zz_colamd.o yz_colamd_global.o

LCOLAMDOBJ = zl_colamd.o yl_colamd_global.o

#-------------------------------------------------------------------------------
# When using the Partition Module:

CCOLAMDSRC = \
	../../CCOLAMD/Source/ccolamd.c \
	../../CCOLAMD/Source/ccolamd_global.c \
	../../CCOLAMD/Include/ccolamd.h

CCOLAMDOBJ = zz_ccolamd.o yz_ccolamd_global.o

LCCOLAMDOBJ = zl_ccolamd.o yl_ccolamd_global.o

$(CCOLAMDOBJ): $(CCOLAMDSRC)

$(LCCOLAMDOBJ): $(CCOLAMDSRC)

IPARTITION_OBJ = \
	z_ccolamd.o \
	z_csymamd.o \
	z_camd.o \
	z_metis.o \
	z_nesdis.o

LPARTITION_OBJ = \
	l_ccolamd.o \
	l_csymamd.o \
	l_camd.o \
	l_metis.o \
	l_nesdis.o

CAMDSRC = ../../CAMD/Source/camd_1.c \
	../../CAMD/Source/camd_2.c \
	../../CAMD/Source/camd_aat.c \
	../../CAMD/Source/camd_control.c \
	../../CAMD/Source/camd_defaults.c \
	../../CAMD/Source/camd_global.c \
	../../CAMD/Source/camd_info.c \
	../../CAMD/Source/camd_order.c \
	../../CAMD/Source/camd_postorder.c \
	../../CAMD/Source/camd_preprocess.c \
	../../CAMD/Source/camd_valid.c \
	../../CAMD/Include/camd.h \
	../../CAMD/Include/camd_internal.h

CAMDOBJ = \
	zz_camd_1.o \
	zz_camd_2.o \
	zz_camd_aat.o \
	zz_camd_control.o \
	zz_camd_defaults.o \
	zz_camd_global.o \
	zz_camd_info.o \
	zz_camd_order.o \
	zz_camd_postorder.o \
	zz_camd_preprocess.o \
	zz_camd_valid.o \
	zz_camd_dump.o

LCAMDOBJ = \
	zl_camd_1.o \
	zl_camd_2.o \
	zl_camd_aat.o \
	zl_camd_control.o \
	zl_camd_defaults.o \
	zl_camd_global.o \
	zl_camd_info.o \
	zl_camd_order.o \
	zl_camd_postorder.o \
	zl_camd_preprocess.o \
	zl_camd_valid.o \
	zl_camd_dump.o

$(CAMDOBJ): $(CAMDSRC)

$(LCAMDOBJ): $(CAMDSRC)

#-------------------------------------------------------------------------------
# If you compile with -DNPARTITION, you may replace the above definitions
# with empty ones (see immediately below), and then you do not need a copy of
# CCOLAMD:
# CCOLAMDSRC =
# CCOLAMDOBJ = 
# LCCOLAMDOBJ =
# IPARTITION_OBJ = 
# LPARTITION_OBJ = 
# CAMDSRC = 
# CAMDOBJ = 
# LCAMDOBJ = 
#-------------------------------------------------------------------------------

IOBJ = \
	z_common.o \
	z_dense.o \
	z_factor.o \
	z_change_factor.o \
	z_memory.o \
	z_sparse.o \
	z_complex.o \
	z_transpose.o \
	z_band.o \
	z_copy.o \
	z_triplet.o \
	z_error.o \
	z_aat.o \
	z_add.o \
	z_check.o \
	z_read.o \
	z_write.o \
	z_amd.o \
	z_analyze.o \
	z_colamd.o \
	z_etree.o \
	z_factorize.o \
	z_postorder.o \
	z_rcond.o \
	z_resymbol.o \
	z_rowcolcounts.o \
	z_rowfac.o \
	z_solve.o \
	z_spsolve.o \
	z_drop.o \
	z_horzcat.o \
	z_norm.o \
	z_scale.o \
	z_sdmult.o \
	z_ssmult.o \
	z_submatrix.o \
	z_vertcat.o \
	z_symmetry.o \
	z_rowadd.o \
	z_rowdel.o \
	z_updown.o \
	z_super_numeric.o \
	z_super_solve.o \
	z_super_symbolic.o \
	$(IPARTITION_OBJ)

LOBJ = \
	l_common.o \
	l_dense.o \
	l_factor.o \
	l_change_factor.o \
	l_memory.o \
	l_sparse.o \
	l_complex.o \
	l_transpose.o \
	l_band.o \
	l_copy.o \
	l_triplet.o \
	l_error.o \
	l_aat.o \
	l_add.o \
	l_check.o \
	l_read.o \
	l_write.o \
	l_amd.o \
	l_analyze.o \
	l_colamd.o \
	l_etree.o \
	l_factorize.o \
	l_postorder.o \
	l_rcond.o \
	l_resymbol.o \
	l_rowcolcounts.o \
	l_rowfac.o \
	l_solve.o \
	l_spsolve.o \
	l_drop.o \
	l_horzcat.o \
	l_norm.o \
	l_scale.o \
	l_sdmult.o \
	l_ssmult.o \
	l_submatrix.o \
	l_vertcat.o \
	l_symmetry.o \
	l_rowadd.o \
	l_rowdel.o \
	l_updown.o \
	l_super_numeric.o \
	l_super_solve.o \
	l_super_symbolic.o \
	$(LPARTITION_OBJ)

IALL = $(IOBJ) $(AMDOBJ)  $(COLAMDOBJ)  $(CCOLAMDOBJ)  $(CAMDOBJ)

LALL = $(LOBJ) $(LAMDOBJ) $(LCOLAMDOBJ) $(LCCOLAMDOBJ) $(LCAMDOBJ)


cm: $(IALL) $(TEST) cm.h Makefile
	$(C) $(I) $(TEST) -o cm $(IALL) $(LIB)

cl: $(LALL) $(TEST) cm.h Makefile
	$(C) -DDLONG $(I) $(TEST) -o cl $(LALL) $(LIB)

cmread: $(IALL) cmread.c Makefile
	$(C) $(I) cmread.c -o cmread $(IALL) $(LIB)

clread: $(LALL) cmread.c Makefile
	$(C) -DDLONG $(I) cmread.c -o clread $(LALL) $(LIB)

z_demo: $(IALL) ../Demo/cholmod_demo.c cm.h Makefile \
	../Demo/cholmod_demo.h
	cat ../Demo/cholmod_demo.c > z_demo.c
	$(C) $(I) -I../Demo z_demo.c -o z_demo $(IALL) $(LIB)

l_demo: $(LALL) ../Demo/cholmod_l_demo.c cm.h Makefile \
	../Demo/cholmod_demo.h
	cat ../Demo/cholmod_l_demo.c > l_demo.c
	$(C) -DDLONG $(I) -I../Demo l_demo.c -o l_demo $(LALL) $(LIB)

go: z_demo l_demo cmread clread cm cl
	$(V) ./z_demo   ../Demo/Matrix/bcsstk01.tri > tmp/demo_k1.out
	$(V) ./z_demo   ../Demo/Matrix/bcsstk02.tri > tmp/demo_k2.out
	$(V) ./z_demo < ../Demo/Matrix/lp_afiro.tri > tmp/demo_afiro.out
	$(V) ./z_demo < ../Demo/Matrix/can___24.mtx > tmp/demo_can24.out
	$(V) ./z_demo < ../Demo/Matrix/c.tri        > tmp/demo_c.out
	$(V) ./z_demo < ../Demo/Matrix/d.tri        > tmp/demo_d.out
	$(V) ./z_demo < ../Demo/Matrix/up.tri       > tmp/demo_up.out
	$(V) ./z_demo < ../Demo/Matrix/c.mtx        > tmp/demo_c_mtx.out
	$(V) ./z_demo < ../Demo/Matrix/0.tri        > tmp/demo_0.out
	$(V) ./z_demo < Matrix/3_2                  > tmp/demo_3_2.out
	$(V) ./z_demo < Matrix/c5lo                 > tmp/demo_c5lo.out
	$(V) ./z_demo < Matrix/c10                  > tmp/demo_c10.out
	$(V) ./z_demo no_such_file                  > tmp/demo_no_such_file.out
	$(V) ./z_demo ../Demo/Matrix/mangle1.mtx    > tmp/demo_mangle1.out
	$(V) ./z_demo ../Demo/Matrix/mangle2.mtx    > tmp/demo_mangle2.out
	$(V) ./z_demo ../Demo/Matrix/mangle3.mtx    > tmp/demo_mangle3.out
	$(V) ./z_demo ../Demo/Matrix/mangle4.mtx    > tmp/demo_mangle4.out
	$(V) ./z_demo ../Demo/Matrix/pts5ldd03.mtx  >  tmp/demo_pts5ldd03.out
	$(V) ./l_demo   ../Demo/Matrix/bcsstk01.tri > tmp/ldemo_k1.out
	$(V) ./l_demo   ../Demo/Matrix/bcsstk02.tri > tmp/ldemo_k2.out
	$(V) ./l_demo < ../Demo/Matrix/lp_afiro.tri > tmp/ldemo_afiro.out
	$(V) ./l_demo < ../Demo/Matrix/can___24.mtx > tmp/ldemo_can24.out
	$(V) ./l_demo < ../Demo/Matrix/c.tri        > tmp/ldemo_c.out
	$(V) ./l_demo < ../Demo/Matrix/d.tri        > tmp/ldemo_d.out
	$(V) ./l_demo < ../Demo/Matrix/up.tri       > tmp/ldemo_up.out
	$(V) ./l_demo < ../Demo/Matrix/c.mtx        > tmp/ldemo_c_mtx.out
	$(V) ./l_demo < ../Demo/Matrix/0.tri        > tmp/ldemo_0.out
	$(V) ./l_demo < Matrix/3_2                  > tmp/ldemo_3_2.out
	$(V) ./l_demo < Matrix/c5lo                 > tmp/ldemo_c5lo.out
	$(V) ./l_demo < Matrix/c10                  > tmp/ldemo_c10.out
	$(V) ./l_demo no_such_file                  > tmp/ldemo_no_such_file.out
	$(V) ./l_demo ../Demo/Matrix/mangle1.mtx    > tmp/ldemo_mangle1.out
	$(V) ./l_demo ../Demo/Matrix/mangle2.mtx    > tmp/ldemo_mangle2.out
	$(V) ./l_demo ../Demo/Matrix/mangle3.mtx    > tmp/ldemo_mangle3.out
	$(V) ./l_demo ../Demo/Matrix/mangle4.mtx    > tmp/ldemo_mangle4.out
	$(V) ./l_demo ../Demo/Matrix/pts5ldd03.mtx  > tmp/ldemo_pts5ldd03.out
	- grep resid tmp/demo*
	$(V) ./cmread no_such_file                  > tmp/no_such_file.out
	$(V) ./cmread Matrix/crud1                  > tmp/crud1.out
	$(V) ./cmread Matrix/crud2                  > tmp/crud2.out
	$(V) ./cmread Matrix/fullcrud.mtx           > tmp/fullcrud.out
	$(V) ./cmread Matrix/fullcrud1.mtx          > tmp/fullcrud1.out
	$(V) ./cmread Matrix/fullcrud2.mtx          > tmp/fullcrud2.out
	$(V) ./cmread Matrix/3by0.mtx               > tmp/3by0.out
	$(V) ./cmread Matrix/fullrza.mtx            > tmp/fullrza.out
	$(V) ./cmread Matrix/fullrsa.mtx            > tmp/fullrsa.out
	$(V) ./cmread Matrix/fullcsa.mtx            > tmp/fullcsa.out
	$(V) ./cmread Matrix/fullcza.mtx            > tmp/fullcza.out
	$(V) ./cmread Matrix/fullcha.mtx            > tmp/fullcha.out
	$(V) ./cmread Matrix/cha.mtx		       > tmp/cha.out
	$(V) ./cmread Matrix/cza.mtx		       > tmp/cza.out
	$(V) ./cmread Matrix/csa.mtx		       > tmp/csa.out
	$(V) ./cmread Matrix/one                    > tmp/one.out
	$(V) ./cmread Matrix/rza.mtx                > tmp/rza.out
	$(V) ./cmread ../Demo/Matrix/mangle5.tri    > tmp/mangle5.out
	$(V) ./cmread ../Demo/Matrix/mangle6.tri    > tmp/mangle6.out
	$(V) ./cmread ../Demo/Matrix/mangle7.tri    > tmp/mangle6.out
	$(V) ./cmread ../Demo/Matrix/mangle8.tri    > tmp/mangle8.out
	$(V) ./cmread ../Demo/Matrix/empty.tri      > tmp/empty.out
	$(V) ./cmread ../Demo/Matrix/one.tri        > tmp/one.out
	$(V) ./cmread Matrix/plskz362.mtx           > tmp/plskz363.out
	$(V) ./cmread Matrix/2diag.tri	       > tmp/2diag.out
	$(V) ./cmread Matrix/r5lo    	       > tmp/r5lo.out
	$(V) ./cmread Matrix/r5lo2    	       > tmp/r5lo2.out
	- diff tmp/r5lo.out tmp/r5lo2.out
	$(V) ./cmread Matrix/cs.mtx	               > tmp/cs.out
	$(V) ./cmread Matrix/2lo.tri	               > tmp/2lo.out
	$(V) ./cmread Matrix/2.tri	               > tmp/2.out
	$(V) ./cmread Matrix/2up.tri	               > tmp/2up.out
	$(V) ./cmread Matrix/huge.tri	       > tmp/huge.out
	$(V) ./cmread Matrix/1e99                   > tmp/1e99.out
	$(V) ./clread no_such_file                  > tmp/l_no_such_file.out
	$(V) ./clread Matrix/crud1                  > tmp/l_crud1.out
	$(V) ./clread Matrix/crud2                  > tmp/l_crud2.out
	$(V) ./clread Matrix/fullcrud.mtx           > tmp/l_fullcrud.out
	$(V) ./clread Matrix/fullcrud1.mtx          > tmp/l_fullcrud1.out
	$(V) ./clread Matrix/fullcrud2.mtx          > tmp/l_fullcrud2.out
	$(V) ./clread Matrix/3by0.mtx               > tmp/l_3by0.out
	$(V) ./clread Matrix/fullrza.mtx            > tmp/l_fullrza.out
	$(V) ./clread Matrix/fullrsa.mtx            > tmp/l_fullrsa.out
	$(V) ./clread Matrix/fullcsa.mtx            > tmp/l_fullcsa.out
	$(V) ./clread Matrix/fullcza.mtx            > tmp/l_fullcza.out
	$(V) ./clread Matrix/fullcha.mtx            > tmp/l_fullcha.out
	$(V) ./clread Matrix/cha.mtx		       > tmp/l_cha.out
	$(V) ./clread Matrix/cza.mtx		       > tmp/l_cza.out
	$(V) ./clread Matrix/csa.mtx		       > tmp/l_csa.out
	$(V) ./clread Matrix/one		       > tmp/l_one.out
	$(V) ./clread Matrix/rza.mtx                > tmp/l_rza.out
	$(V) ./clread ../Demo/Matrix/mangle5.tri    > tmp/l_mangle5.out
	$(V) ./clread ../Demo/Matrix/mangle6.tri    > tmp/l_mangle6.out
	$(V) ./clread ../Demo/Matrix/mangle7.tri    > tmp/l_mangle6.out
	$(V) ./clread ../Demo/Matrix/mangle8.tri    > tmp/l_mangle8.out
	$(V) ./clread ../Demo/Matrix/empty.tri      > tmp/l_empty.out
	$(V) ./clread ../Demo/Matrix/one.tri        > tmp/l_one.out
	$(V) ./clread Matrix/plskz362.mtx           > tmp/l_plskz363.out
	$(V) ./clread Matrix/2diag.tri	       > tmp/l_2diag.out
	$(V) ./clread Matrix/r5lo    	       > tmp/l_r5lo.out
	$(V) ./clread Matrix/r5lo2    	       > tmp/l_r5lo2.out
	- diff tmp/r5lo.out tmp/r5lo2.out
	$(V) ./clread Matrix/cs.mtx	               > tmp/l_cs.out
	$(V) ./clread Matrix/2lo.tri	               > tmp/l_l_2lo.out
	$(V) ./clread Matrix/2.tri	               > tmp/l_2.out
	$(V) ./clread Matrix/2up.tri	               > tmp/l_2up.out
	$(V) ./clread Matrix/huge.tri               > tmp/l_huge.out
	$(V) ./clread Matrix/1e99                   > tmp/l_1e99.out
	$(V) ./cm    < Matrix/galenet > tmp/galenet.out
	$(V) ./cl    < Matrix/galenet > tmp/l_galenet.out
	- $(COVER)
	$(V) ./cm    < Matrix/5by50   > tmp/5by50.out
	$(V) ./cl    < Matrix/5by50   > tmp/l_5by50.out
	- $(COVER)
	$(V) ./cm    < Matrix/r5lo    > tmp/r5lo.out 
	$(V) ./cl    < Matrix/r5lo    > tmp/l_r5lo.out
	$(V) ./cm    < Matrix/r5up    > tmp/r5up.out
	$(V) ./cl    < Matrix/r5up    > tmp/l_r5up.out
	$(V) ./cm    < Matrix/r5up2   > tmp/r5up2.out
	$(V) ./cl    < Matrix/r5up2   > tmp/l_r5up2.out
	$(V) ./cm    < Matrix/c5up2   > tmp/c5up2.out
	$(V) ./cl    < Matrix/c5up2   > tmp/l_c5up2.out
	$(V) ./cm    < Matrix/z5up2   > tmp/z5up2.out
	$(V) ./cl    < Matrix/z5up2   > tmp/l_z5up2.out
	$(V) ./cm -m < Matrix/z5lo    > tmp/z5lo.out
	$(V) ./cl -m < Matrix/z5lo    > tmp/l_z5lo.out
	$(V) ./cm    < Matrix/ibm32   > tmp/ibm.out
	$(V) ./cl    < Matrix/ibm32   > tmp/l_ibm.out
	- $(COVER)
	$(V) ./cm -m < Matrix/c5lo    > tmp/c5lo.out
	$(V) ./cl -m < Matrix/c5lo    > tmp/l_c5lo.out
	$(V) ./cm -m < Matrix/z10     > tmp/z10.out
	$(V) ./cl -m < Matrix/z10     > tmp/l_z10.out
	$(V) ./cm -m < Matrix/z5up    > tmp/z5up.out
	$(V) ./cl -m < Matrix/z5up    > tmp/l_z5up.out
	- $(COVER)
	$(V) ./cm -s < Matrix/3singular  > tmp/3singular.out
	$(V) ./cl -s < Matrix/3singular  > tmp/l_3singular.out
	$(V) ./cm -s < Matrix/z3singular > tmp/z3singular.out
	$(V) ./cl -s < Matrix/z3singular > tmp/l_z3singular.out
	$(V) ./cm -s < Matrix/c3singular > tmp/c3singular.out
	$(V) ./cl -s < Matrix/c3singular > tmp/l_c3singular.out
	$(V) ./cm -m < Matrix/0       > tmp/0.out
	$(V) ./cl -m < Matrix/0       > tmp/l_0.out
	$(V) ./cm -m < Matrix/afiro   > tmp/afiro.out
	$(V) ./cl -m < Matrix/afiro   > tmp/l_afiro.out
	- $(COVER)
	$(V) ./cm -m < Matrix/k01up   > tmp/k01up.out
	$(V) ./cl -m < Matrix/k01up   > tmp/l_k01up.out
	- $(COVER)
	$(V) ./cm    < Matrix/diag    > tmp/diag.out
	$(V) ./cl    < Matrix/diag    > tmp/l_diag.out
	$(V) ./cm -m < Matrix/ex5lo   > tmp/ex5lo.out
	$(V) ./cl -m < Matrix/ex5lo   > tmp/l_ex5lo.out
	- $(COVER)
	$(V) ./cm    < Matrix/20lo    > tmp/20lo.out
	$(V) ./cl    < Matrix/20lo    > tmp/l_20lo.out
	$(V) ./cm    < Matrix/z30lo   > tmp/z30lo.out
	$(V) ./cl    < Matrix/z30lo   > tmp/l_z30lo.out
	- $(COVER)
	$(V) ./cm -m < Matrix/z30up   > tmp/z30up.out
	$(V) ./cl -m < Matrix/z30up   > tmp/l_z30up.out
	$(V) ./cm    < Matrix/c10     > tmp/c10.out
	$(V) ./cl    < Matrix/c10     > tmp/l_c10.out
	$(V) ./cm    < Matrix/c30lo   > tmp/c30lo.out
	$(V) ./cl    < Matrix/c30lo   > tmp/l_c30lo.out
	- $(COVER)
	$(V) ./cm -m < Matrix/c30up   > tmp/c30up.out
	$(V) ./cl -m < Matrix/c30up   > tmp/l_c30up.out
	$(V) ./cm    < Matrix/pi      > tmp/pi.out
	$(V) ./cl    < Matrix/pi      > tmp/l_pi.out
	$(V) ./cm    < Matrix/cpi     > tmp/cpi.out
	$(V) ./cl    < Matrix/cpi     > tmp/l_cpi.out
	$(V) ./cm    < Matrix/1_0     > tmp/1_0.out
	$(V) ./cl    < Matrix/1_0     > tmp/l_1_0.out
	$(V) ./cm -s < Matrix/3b      > tmp/3b.out
	$(V) ./cl -s < Matrix/3b      > tmp/l_3b.out
	$(V) ./cm -s < Matrix/cza     > tmp/cza2.out
	$(V) ./cl -s < Matrix/cza     > tmp/l_cza2.out
	$(V) ./cm    < Matrix/0_1     > tmp/0_1.out
	$(V) ./cl    < Matrix/0_1     > tmp/l_0_1.out
	- $(COVER)
	$(V) ./cm -n < Matrix/galenet > tmp/galenet_nan.out
	- $(COVER)
	$(V) ./cl -n < Matrix/galenet > tmp/l_galenet_nan.out
	- $(COVER)
	$(V) ./cm    < Matrix/a1      > tmp/a1.out
	- $(COVER)
	$(V) ./cl    < Matrix/a1      > tmp/l_a1.out
	- $(COVER)
	$(V) ./cm    < Matrix/zero    > tmp/zero.out
	$(V) ./cl    < Matrix/zero    > tmp/zero.out
	- $(COVER)

cov:
	- $(COVER)

purge: distclean

distclean: clean
	- $(RM) cm cl cmread clread *.c.gcov *.out tmp/*.out z_demo l_demo
	- $(RM) leak zz_*.c z_*.c *.a l_*.c zl_*.c cov.sort yl_*.c yz_*.c
	- $(RM) -r cm.profile cmread.profile z_demo.profile 
	- $(RM) -r cl.profile clread.profile l_demo.profile 
	- $(RM) *.gcda *.gcno
	- $(RM) temp*.mtx

clean:
	- $(RM) $(CLEAN)


$(AMDOBJ): $(AMDSRC)

$(LAMDOBJ): $(AMDSRC)

$(IOBJ): $(INC)

$(LOBJ): $(INC)

.c.o:
	$(C) -c $(I) $*.c

#-------------------------------------------------------------------------------
# AMD
#-------------------------------------------------------------------------------

zz_amd_1.o: ../../AMD/Source/amd_1.c
	$(C) -E $(I) $< | $(PRETTY) > zz_amd_1.c
	$(C) -c $(I) zz_amd_1.c

zz_amd_2.o: ../../AMD/Source/amd_2.c
	$(C) -E $(I) $< | $(PRETTY) > zz_amd_2.c
	$(C) -c $(I) zz_amd_2.c

zz_amd_aat.o: ../../AMD/Source/amd_aat.c
	$(C) -E $(I) $< | $(PRETTY) > zz_amd_aat.c
	$(C) -c $(I) zz_amd_aat.c

zz_amd_control.o: ../../AMD/Source/amd_control.c
	$(C) -E $(I) $< | $(PRETTY) > zz_amd_control.c
	$(C) -c $(I) zz_amd_control.c

zz_amd_defaults.o: ../../AMD/Source/amd_defaults.c
	$(C) -E $(I) $< | $(PRETTY) > zz_amd_defaults.c
	$(C) -c $(I) zz_amd_defaults.c

zz_amd_global.o: ../../AMD/Source/amd_global.c
	$(C) -E $(I) $< | $(PRETTY) > zz_amd_global.c
	$(C) -c $(I) zz_amd_global.c

zz_amd_dump.o: ../../AMD/Source/amd_dump.c
	$(C) -E $(I) $< | $(PRETTY) > zz_amd_dump.c
	$(C) -c $(I) zz_amd_dump.c

zz_amd_info.o: ../../AMD/Source/amd_info.c
	$(C) -E $(I) $< | $(PRETTY) > zz_amd_info.c
	$(C) -c $(I) zz_amd_info.c

zz_amd_order.o: ../../AMD/Source/amd_order.c
	$(C) -E $(I) $< | $(PRETTY) > zz_amd_order.c
	$(C) -c $(I) zz_amd_order.c

zz_amd_postorder.o: ../../AMD/Source/amd_postorder.c
	$(C) -E $(I) $< | $(PRETTY) > zz_amd_postorder.c
	$(C) -c $(I) zz_amd_postorder.c

zz_amd_post_tree.o: ../../AMD/Source/amd_post_tree.c
	$(C) -E $(I) $< | $(PRETTY) > zz_amd_post_tree.c
	$(C) -c $(I) zz_amd_post_tree.c

zz_amd_preprocess.o: ../../AMD/Source/amd_preprocess.c
	$(C) -E $(I) $< | $(PRETTY) > zz_amd_preprocess.c
	$(C) -c $(I) zz_amd_preprocess.c

zz_amd_valid.o: ../../AMD/Source/amd_valid.c
	$(C) -E $(I) $< | $(PRETTY) > zz_amd_valid.c
	$(C) -c $(I) zz_amd_valid.c

#-------------------------------------------------------------------------------

zl_amd_1.o: ../../AMD/Source/amd_1.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_amd_1.c
	$(C) -c $(I) zl_amd_1.c

zl_amd_2.o: ../../AMD/Source/amd_2.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_amd_2.c
	$(C) -c $(I) zl_amd_2.c

zl_amd_aat.o: ../../AMD/Source/amd_aat.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_amd_aat.c
	$(C) -c $(I) zl_amd_aat.c

zl_amd_control.o: ../../AMD/Source/amd_control.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_amd_control.c
	$(C) -c $(I) zl_amd_control.c

zl_amd_defaults.o: ../../AMD/Source/amd_defaults.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_amd_defaults.c
	$(C) -c $(I) zl_amd_defaults.c

zl_amd_global.o: ../../AMD/Source/amd_global.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_amd_global.c
	$(C) -c $(I) zl_amd_global.c

zl_amd_dump.o: ../../AMD/Source/amd_dump.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_amd_dump.c
	$(C) -c $(I) zl_amd_dump.c

zl_amd_info.o: ../../AMD/Source/amd_info.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_amd_info.c
	$(C) -c $(I) zl_amd_info.c

zl_amd_order.o: ../../AMD/Source/amd_order.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_amd_order.c
	$(C) -c $(I) zl_amd_order.c

zl_amd_postorder.o: ../../AMD/Source/amd_postorder.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_amd_postorder.c
	$(C) -c $(I) zl_amd_postorder.c

zl_amd_post_tree.o: ../../AMD/Source/amd_post_tree.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_amd_post_tree.c
	$(C) -c $(I) zl_amd_post_tree.c

zl_amd_preprocess.o: ../../AMD/Source/amd_preprocess.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_amd_preprocess.c
	$(C) -c $(I) zl_amd_preprocess.c

zl_amd_valid.o: ../../AMD/Source/amd_valid.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_amd_valid.c
	$(C) -c $(I) zl_amd_valid.c

#-------------------------------------------------------------------------------
# CAMD
#-------------------------------------------------------------------------------

zz_camd_1.o: ../../CAMD/Source/camd_1.c
	$(C) -E $(I) $< | $(PRETTY) > zz_camd_1.c
	$(C) -c $(I) zz_camd_1.c

zz_camd_2.o: ../../CAMD/Source/camd_2.c
	$(C) -E $(I) $< | $(PRETTY) > zz_camd_2.c
	$(C) -c $(I) zz_camd_2.c

zz_camd_aat.o: ../../CAMD/Source/camd_aat.c
	$(C) -E $(I) $< | $(PRETTY) > zz_camd_aat.c
	$(C) -c $(I) zz_camd_aat.c

zz_camd_control.o: ../../CAMD/Source/camd_control.c
	$(C) -E $(I) $< | $(PRETTY) > zz_camd_control.c
	$(C) -c $(I) zz_camd_control.c

zz_camd_defaults.o: ../../CAMD/Source/camd_defaults.c
	$(C) -E $(I) $< | $(PRETTY) > zz_camd_defaults.c
	$(C) -c $(I) zz_camd_defaults.c

zz_camd_global.o: ../../CAMD/Source/camd_global.c
	$(C) -E $(I) $< | $(PRETTY) > zz_camd_global.c
	$(C) -c $(I) zz_camd_global.c

zz_camd_dump.o: ../../CAMD/Source/camd_dump.c
	$(C) -E $(I) $< | $(PRETTY) > zz_camd_dump.c
	$(C) -c $(I) zz_camd_dump.c

zz_camd_info.o: ../../CAMD/Source/camd_info.c
	$(C) -E $(I) $< | $(PRETTY) > zz_camd_info.c
	$(C) -c $(I) zz_camd_info.c

zz_camd_order.o: ../../CAMD/Source/camd_order.c
	$(C) -E $(I) $< | $(PRETTY) > zz_camd_order.c
	$(C) -c $(I) zz_camd_order.c

zz_camd_postorder.o: ../../CAMD/Source/camd_postorder.c
	$(C) -E $(I) $< | $(PRETTY) > zz_camd_postorder.c
	$(C) -c $(I) zz_camd_postorder.c

zz_camd_preprocess.o: ../../CAMD/Source/camd_preprocess.c
	$(C) -E $(I) $< | $(PRETTY) > zz_camd_preprocess.c
	$(C) -c $(I) zz_camd_preprocess.c

zz_camd_valid.o: ../../CAMD/Source/camd_valid.c
	$(C) -E $(I) $< | $(PRETTY) > zz_camd_valid.c
	$(C) -c $(I) zz_camd_valid.c

#-------------------------------------------------------------------------------

zl_camd_1.o: ../../CAMD/Source/camd_1.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_camd_1.c
	$(C) -c $(I) zl_camd_1.c

zl_camd_2.o: ../../CAMD/Source/camd_2.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_camd_2.c
	$(C) -c $(I) zl_camd_2.c

zl_camd_aat.o: ../../CAMD/Source/camd_aat.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_camd_aat.c
	$(C) -c $(I) zl_camd_aat.c

zl_camd_control.o: ../../CAMD/Source/camd_control.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_camd_control.c
	$(C) -c $(I) zl_camd_control.c

zl_camd_defaults.o: ../../CAMD/Source/camd_defaults.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_camd_defaults.c
	$(C) -c $(I) zl_camd_defaults.c

zl_camd_global.o: ../../CAMD/Source/camd_global.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_camd_global.c
	$(C) -c $(I) zl_camd_global.c

zl_camd_dump.o: ../../CAMD/Source/camd_dump.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_camd_dump.c
	$(C) -c $(I) zl_camd_dump.c

zl_camd_info.o: ../../CAMD/Source/camd_info.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_camd_info.c
	$(C) -c $(I) zl_camd_info.c

zl_camd_order.o: ../../CAMD/Source/camd_order.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_camd_order.c
	$(C) -c $(I) zl_camd_order.c

zl_camd_postorder.o: ../../CAMD/Source/camd_postorder.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_camd_postorder.c
	$(C) -c $(I) zl_camd_postorder.c

zl_camd_preprocess.o: ../../CAMD/Source/camd_preprocess.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_camd_preprocess.c
	$(C) -c $(I) zl_camd_preprocess.c

zl_camd_valid.o: ../../CAMD/Source/camd_valid.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_camd_valid.c
	$(C) -c $(I) zl_camd_valid.c

#-------------------------------------------------------------------------------

zz_colamd.o: ../../COLAMD/Source/colamd.c
	$(C) -E $(I) $< | $(PRETTY) > zz_colamd.c
	$(C) -c $(I) zz_colamd.c

yz_colamd_global.o: ../../COLAMD/Source/colamd_global.c
	$(C) -E $(I) $< | $(PRETTY) > yz_colamd_global.c
	$(C) -c $(I) yz_colamd_global.c

zl_colamd.o: ../../COLAMD/Source/colamd.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_colamd.c
	$(C) -c $(I) zl_colamd.c

yl_colamd_global.o: ../../COLAMD/Source/colamd_global.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > yl_colamd_global.c
	$(C) -c $(I) yl_colamd_global.c

#-------------------------------------------------------------------------------

zz_ccolamd.o: ../../CCOLAMD/Source/ccolamd.c
	$(C) -E $(I) $< | $(PRETTY) > zz_ccolamd.c
	$(C) -c $(I) zz_ccolamd.c

yz_ccolamd_global.o: ../../CCOLAMD/Source/ccolamd_global.c
	$(C) -E $(I) $< | $(PRETTY) > yz_ccolamd_global.c
	$(C) -c $(I) yz_ccolamd_global.c

zl_ccolamd.o: ../../CCOLAMD/Source/ccolamd.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > zl_ccolamd.c
	$(C) -c $(I) zl_ccolamd.c

yl_ccolamd_global.o: ../../CCOLAMD/Source/ccolamd_global.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > yl_ccolamd_global.c
	$(C) -c $(I) yl_ccolamd_global.c

#-------------------------------------------------------------------------------

z_check.o: ../Check/cholmod_check.c
	$(C) -E $(I) $< | $(PRETTY) > z_check.c
	$(C) -c $(I) z_check.c

z_read.o: ../Check/cholmod_read.c
	$(C) -E $(I) $< | $(PRETTY) > z_read.c
	$(C) -c $(I) z_read.c

z_write.o: ../Check/cholmod_write.c
	$(C) -E $(I) $< | $(PRETTY) > z_write.c
	$(C) -c $(I) z_write.c

#-------------------------------------------------------------------------------

z_common.o: ../Core/cholmod_common.c
	$(C) -E $(I) $< | $(PRETTY) > z_common.c
	$(C) -c $(I) z_common.c

z_dense.o: ../Core/cholmod_dense.c ../Core/t_cholmod_dense.c
	$(C) -E $(I) $< | $(PRETTY) > z_dense.c
	$(C) -c $(I) z_dense.c

z_factor.o: ../Core/cholmod_factor.c
	$(C) -E $(I) $< | $(PRETTY) > z_factor.c
	$(C) -c $(I) z_factor.c

z_change_factor.o: ../Core/cholmod_change_factor.c \
	../Core/t_cholmod_change_factor.c
	$(C) -E $(I) $< | $(PRETTY) > z_change_factor.c
	$(C) -c $(I) z_change_factor.c

z_memory.o: ../Core/cholmod_memory.c
	$(C) -E $(I) $< | $(PRETTY) > z_memory.c
	$(C) -c $(I) z_memory.c

z_sparse.o: ../Core/cholmod_sparse.c
	$(C) -E $(I) $< | $(PRETTY) > z_sparse.c
	$(C) -c $(I) z_sparse.c

z_complex.o: ../Core/cholmod_complex.c
	$(C) -E $(I) $< | $(PRETTY) > z_complex.c
	$(C) -c $(I) z_complex.c

z_transpose.o: ../Core/cholmod_transpose.c ../Core/t_cholmod_transpose.c
	$(C) -E $(I) $< | $(PRETTY) > z_transpose.c
	$(C) -c $(I) z_transpose.c

z_band.o: ../Core/cholmod_band.c
	$(C) -E $(I) $< | $(PRETTY) > z_band.c
	$(C) -c $(I) z_band.c

z_copy.o: ../Core/cholmod_copy.c
	$(C) -E $(I) $< | $(PRETTY) > z_copy.c
	$(C) -c $(I) z_copy.c

z_triplet.o: ../Core/cholmod_triplet.c ../Core/t_cholmod_triplet.c
	$(C) -E $(I) $< | $(PRETTY) > z_triplet.c
	$(C) -c $(I) z_triplet.c

z_error.o: ../Core/cholmod_error.c
	$(C) -E $(I) $< | $(PRETTY) > z_error.c
	$(C) -c $(I) z_error.c

z_aat.o: ../Core/cholmod_aat.c
	$(C) -E $(I) $< | $(PRETTY) > z_aat.c
	$(C) -c $(I) z_aat.c

z_add.o: ../Core/cholmod_add.c
	$(C) -E $(I) $< | $(PRETTY) > z_add.c
	$(C) -c $(I) z_add.c

#-------------------------------------------------------------------------------

z_amd.o: ../Cholesky/cholmod_amd.c
	$(C) -E $(I) $< | $(PRETTY) > z_amd.c
	$(C) -c $(I) z_amd.c

z_analyze.o: ../Cholesky/cholmod_analyze.c
	$(C) -E $(I) $< | $(PRETTY) > z_analyze.c
	$(C) -c $(I) z_analyze.c

z_colamd.o: ../Cholesky/cholmod_colamd.c
	$(C) -E $(I) $< | $(PRETTY) > z_colamd.c
	$(C) -c $(I) z_colamd.c

z_etree.o: ../Cholesky/cholmod_etree.c
	$(C) -E $(I) $< | $(PRETTY) > z_etree.c
	$(C) -c $(I) z_etree.c

z_factorize.o: ../Cholesky/cholmod_factorize.c
	$(C) -E $(I) $< | $(PRETTY) > z_factorize.c
	$(C) -c $(I) z_factorize.c

z_postorder.o: ../Cholesky/cholmod_postorder.c
	$(C) -E $(I) $< | $(PRETTY) > z_postorder.c
	$(C) -c $(I) z_postorder.c

z_rcond.o: ../Cholesky/cholmod_rcond.c 
	$(C) -E $(I) $< | $(PRETTY) > z_rcond.c
	$(C) -c $(I) z_rcond.c

z_resymbol.o: ../Cholesky/cholmod_resymbol.c
	$(C) -E $(I) $< | $(PRETTY) > z_resymbol.c
	$(C) -c $(I) z_resymbol.c

z_rowcolcounts.o: ../Cholesky/cholmod_rowcolcounts.c
	$(C) -E $(I) $< | $(PRETTY) > z_rowcolcounts.c
	$(C) -c $(I) z_rowcolcounts.c

z_solve.o: ../Cholesky/cholmod_solve.c ../Cholesky/t_cholmod_lsolve.c \
	../Cholesky/t_cholmod_ltsolve.c ../Cholesky/t_cholmod_solve.c
	$(C) -E $(I) $< | $(PRETTY) > z_solve.c
	$(C) -c $(I) z_solve.c

z_spsolve.o: ../Cholesky/cholmod_spsolve.c
	$(C) -E $(I) $< | $(PRETTY) > z_spsolve.c
	$(C) -c $(I) z_spsolve.c

z_rowfac.o: ../Cholesky/cholmod_rowfac.c ../Cholesky/t_cholmod_rowfac.c
	$(C) -E $(I) $< | $(PRETTY) > z_rowfac.c
	$(C) -c $(I) z_rowfac.c

#------------------------------------------------------------------------------- 
z_ccolamd.o: ../Partition/cholmod_ccolamd.c
	$(C) -E $(I) $< | $(PRETTY) > z_ccolamd.c
	$(C) -c $(I) z_ccolamd.c

z_csymamd.o: ../Partition/cholmod_csymamd.c
	$(C) -E $(I) $< | $(PRETTY) > z_csymamd.c
	$(C) -c $(I) z_csymamd.c

z_camd.o: ../Partition/cholmod_camd.c
	$(C) -E $(I) $< | $(PRETTY) > z_camd.c
	$(C) -c $(I) z_camd.c

z_metis.o: ../Partition/cholmod_metis.c
	$(C) -E $(I) $< | $(PRETTY) > z_metis.c
	$(C) -c $(I) z_metis.c

z_nesdis.o: ../Partition/cholmod_nesdis.c
	$(C) -E $(I) $< | $(PRETTY) > z_nesdis.c
	$(C) -c $(I) z_nesdis.c

#-------------------------------------------------------------------------------

z_horzcat.o: ../MatrixOps/cholmod_horzcat.c
	$(C) -E $(I) $< | $(PRETTY) > z_horzcat.c
	$(C) -c $(I) z_horzcat.c

z_norm.o: ../MatrixOps/cholmod_norm.c
	$(C) -E $(I) $< | $(PRETTY) > z_norm.c
	$(C) -c $(I) z_norm.c

z_scale.o: ../MatrixOps/cholmod_scale.c
	$(C) -E $(I) $< | $(PRETTY) > z_scale.c
	$(C) -c $(I) z_scale.c

z_drop.o: ../MatrixOps/cholmod_drop.c
	$(C) -E $(I) $< | $(PRETTY) > z_drop.c
	$(C) -c $(I) z_drop.c

z_sdmult.o: ../MatrixOps/cholmod_sdmult.c ../MatrixOps/t_cholmod_sdmult.c
	$(C) -E $(I) $< | $(PRETTY) > z_sdmult.c
	$(C) -c $(I) z_sdmult.c

z_ssmult.o: ../MatrixOps/cholmod_ssmult.c
	$(C) -E $(I) $< | $(PRETTY) > z_ssmult.c
	$(C) -c $(I) z_ssmult.c

z_submatrix.o: ../MatrixOps/cholmod_submatrix.c
	$(C) -E $(I) $< | $(PRETTY) > z_submatrix.c
	$(C) -c $(I) z_submatrix.c

z_vertcat.o: ../MatrixOps/cholmod_vertcat.c
	$(C) -E $(I) $< | $(PRETTY) > z_vertcat.c
	$(C) -c $(I) z_vertcat.c

z_symmetry.o: ../MatrixOps/cholmod_symmetry.c
	$(C) -E $(I) $< | $(PRETTY) > z_symmetry.c
	$(C) -c $(I) z_symmetry.c

#-------------------------------------------------------------------------------

z_rowadd.o: ../Modify/cholmod_rowadd.c
	$(C) -E $(I) $< | $(PRETTY) > z_rowadd.c
	$(C) -c $(I) z_rowadd.c

z_rowdel.o: ../Modify/cholmod_rowdel.c
	$(C) -E $(I) $< | $(PRETTY) > z_rowdel.c
	$(C) -c $(I) z_rowdel.c

z_updown.o: ../Modify/cholmod_updown.c \
	../Modify/t_cholmod_updown.c ../Modify/t_cholmod_updown_numkr.c
	$(C) -E $(I) $< | $(PRETTY) > z_updown.c
	$(C) -c $(I) z_updown.c

#-------------------------------------------------------------------------------

z_super_numeric.o: ../Supernodal/cholmod_super_numeric.c \
		../Supernodal/t_cholmod_super_numeric.c
	$(C) -E $(I) $< | $(PRETTY) > z_super_numeric.c
	$(C) -c $(I) z_super_numeric.c

z_super_symbolic.o: ../Supernodal/cholmod_super_symbolic.c
	$(C) -E $(I) $< | $(PRETTY) > z_super_symbolic.c
	$(C) -c $(I) z_super_symbolic.c

z_super_solve.o: ../Supernodal/cholmod_super_solve.c
	$(C) -E $(I) $< | $(PRETTY) > z_super_solve.c
	$(C) -c $(I) z_super_solve.c

#-------------------------------------------------------------------------------
#-------------------------------------------------------------------------------

l_check.o: ../Check/cholmod_check.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_check.c
	$(C) -c $(I) l_check.c

l_read.o: ../Check/cholmod_read.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_read.c
	$(C) -c $(I) l_read.c

l_write.o: ../Check/cholmod_write.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_write.c
	$(C) -c $(I) l_write.c

#-------------------------------------------------------------------------------

l_common.o: ../Core/cholmod_common.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_common.c
	$(C) -c $(I) l_common.c

l_dense.o: ../Core/cholmod_dense.c ../Core/t_cholmod_dense.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_dense.c
	$(C) -c $(I) l_dense.c

l_factor.o: ../Core/cholmod_factor.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_factor.c
	$(C) -c $(I) l_factor.c

l_change_factor.o: ../Core/cholmod_change_factor.c \
	../Core/t_cholmod_change_factor.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_change_factor.c
	$(C) -c $(I) l_change_factor.c

l_memory.o: ../Core/cholmod_memory.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_memory.c
	$(C) -c $(I) l_memory.c

l_sparse.o: ../Core/cholmod_sparse.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_sparse.c
	$(C) -c $(I) l_sparse.c

l_complex.o: ../Core/cholmod_complex.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_complex.c
	$(C) -c $(I) l_complex.c

l_transpose.o: ../Core/cholmod_transpose.c ../Core/t_cholmod_transpose.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_transpose.c
	$(C) -c $(I) l_transpose.c

l_band.o: ../Core/cholmod_band.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_band.c
	$(C) -c $(I) l_band.c

l_copy.o: ../Core/cholmod_copy.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_copy.c
	$(C) -c $(I) l_copy.c

l_triplet.o: ../Core/cholmod_triplet.c ../Core/t_cholmod_triplet.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_triplet.c
	$(C) -c $(I) l_triplet.c

l_error.o: ../Core/cholmod_error.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_error.c
	$(C) -c $(I) l_error.c

l_aat.o: ../Core/cholmod_aat.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_aat.c
	$(C) -c $(I) l_aat.c

l_add.o: ../Core/cholmod_add.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_add.c
	$(C) -c $(I) l_add.c

#-------------------------------------------------------------------------------

l_amd.o: ../Cholesky/cholmod_amd.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_amd.c
	$(C) -c $(I) l_amd.c

l_analyze.o: ../Cholesky/cholmod_analyze.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_analyze.c
	$(C) -c $(I) l_analyze.c

l_colamd.o: ../Cholesky/cholmod_colamd.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_colamd.c
	$(C) -c $(I) l_colamd.c

l_etree.o: ../Cholesky/cholmod_etree.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_etree.c
	$(C) -c $(I) l_etree.c

l_factorize.o: ../Cholesky/cholmod_factorize.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_factorize.c
	$(C) -c $(I) l_factorize.c

l_postorder.o: ../Cholesky/cholmod_postorder.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_postorder.c
	$(C) -c $(I) l_postorder.c

l_rcond.o: ../Cholesky/cholmod_rcond.c 
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_rcond.c
	$(C) -c $(I) l_rcond.c

l_resymbol.o: ../Cholesky/cholmod_resymbol.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_resymbol.c
	$(C) -c $(I) l_resymbol.c

l_rowcolcounts.o: ../Cholesky/cholmod_rowcolcounts.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_rowcolcounts.c
	$(C) -c $(I) l_rowcolcounts.c

l_solve.o: ../Cholesky/cholmod_solve.c ../Cholesky/t_cholmod_lsolve.c \
	../Cholesky/t_cholmod_ltsolve.c ../Cholesky/t_cholmod_solve.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_solve.c
	$(C) -c $(I) l_solve.c

l_spsolve.o: ../Cholesky/cholmod_spsolve.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_spsolve.c
	$(C) -c $(I) l_spsolve.c

l_rowfac.o: ../Cholesky/cholmod_rowfac.c ../Cholesky/t_cholmod_rowfac.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_rowfac.c
	$(C) -c $(I) l_rowfac.c

#------------------------------------------------------------------------------- 
l_ccolamd.o: ../Partition/cholmod_ccolamd.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_ccolamd.c
	$(C) -c $(I) l_ccolamd.c

l_csymamd.o: ../Partition/cholmod_csymamd.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_csymamd.c
	$(C) -c $(I) l_csymamd.c

l_camd.o: ../Partition/cholmod_camd.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_camd.c
	$(C) -c $(I) l_camd.c

l_metis.o: ../Partition/cholmod_metis.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_metis.c
	$(C) -c $(I) l_metis.c

l_nesdis.o: ../Partition/cholmod_nesdis.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_nesdis.c
	$(C) -c $(I) l_nesdis.c

#-------------------------------------------------------------------------------

l_horzcat.o: ../MatrixOps/cholmod_horzcat.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_horzcat.c
	$(C) -c $(I) l_horzcat.c

l_norm.o: ../MatrixOps/cholmod_norm.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_norm.c
	$(C) -c $(I) l_norm.c

l_scale.o: ../MatrixOps/cholmod_scale.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_scale.c
	$(C) -c $(I) l_scale.c

l_drop.o: ../MatrixOps/cholmod_drop.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_drop.c
	$(C) -c $(I) l_drop.c

l_sdmult.o: ../MatrixOps/cholmod_sdmult.c ../MatrixOps/t_cholmod_sdmult.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_sdmult.c
	$(C) -c $(I) l_sdmult.c

l_ssmult.o: ../MatrixOps/cholmod_ssmult.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_ssmult.c
	$(C) -c $(I) l_ssmult.c

l_submatrix.o: ../MatrixOps/cholmod_submatrix.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_submatrix.c
	$(C) -c $(I) l_submatrix.c

l_vertcat.o: ../MatrixOps/cholmod_vertcat.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_vertcat.c
	$(C) -c $(I) l_vertcat.c

l_symmetry.o: ../MatrixOps/cholmod_symmetry.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_symmetry.c
	$(C) -c $(I) l_symmetry.c

#-------------------------------------------------------------------------------

l_rowadd.o: ../Modify/cholmod_rowadd.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_rowadd.c
	$(C) -c $(I) l_rowadd.c

l_rowdel.o: ../Modify/cholmod_rowdel.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_rowdel.c
	$(C) -c $(I) l_rowdel.c

l_updown.o: ../Modify/cholmod_updown.c \
	../Modify/t_cholmod_updown.c ../Modify/t_cholmod_updown_numkr.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_updown.c
	$(C) -c $(I) l_updown.c

#-------------------------------------------------------------------------------

l_super_numeric.o: ../Supernodal/cholmod_super_numeric.c \
		../Supernodal/t_cholmod_super_numeric.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_super_numeric.c
	$(C) -c $(I) l_super_numeric.c

l_super_symbolic.o: ../Supernodal/cholmod_super_symbolic.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_super_symbolic.c
	$(C) -c $(I) l_super_symbolic.c

l_super_solve.o: ../Supernodal/cholmod_super_solve.c
	$(C) -DDLONG -E $(I) $< | $(PRETTY) > l_super_solve.c
	$(C) -c $(I) l_super_solve.c

#-------------------------------------------------------------------------------




AM_CFLAGS = -I$(top_srcdir)/Include -I$(top_srcdir)/Demo
AM_LDFLAGS = -L$(top_builddir)/Lib -lm -llapack -lblas -lgfortran -lgfortranbegin -lcholmod -lcolamd -lamd

if ENABLE_METIS
   AM_LDFLAGS += -lcamd -lccolamd -lmetis
endif


check_PROGRAMS = prepare z_demo l_demo cmread clread cm cl
z_demo_SOURCES = z_demo.c
l_demo_SOURCES = l_demo.c
l_demo_CPPFLAGS = -DDLONG
cmread_SOURCES = cmread.c
clread_SOURCES = cmread.c
clread_CPPFLAGS = -DDLONG
cm_SOURCES = cm.c solve.c aug.c \
	null.c null2.c raw_factor.c \
	test_ops.c unpack.c memory.c \
	amdtest.c huge.c ctest.c \
	cctest.c lpdemo.c camdtest.c 
cl_SOURCES = cm.c solve.c aug.c \
	null.c null2.c raw_factor.c \
	test_ops.c unpack.c memory.c \
	amdtest.c huge.c ctest.c \
	cctest.c lpdemo.c camdtest.c 

cl_CPPFLAGS = -DDLONG

prepare:
	cat $(top_srcdir)/Demo/cholmod_demo.c > z_demo.c
	cat $(top_srcdir)/Demo/cholmod_demo.c > l_demo.c

test: check
	./z_demo   ../Demo/Matrix/bcsstk01.tri > tmp/demo_k1.out
	./z_demo   ../Demo/Matrix/bcsstk02.tri > tmp/demo_k2.out
	./z_demo < ../Demo/Matrix/lp_afiro.tri > tmp/demo_afiro.out
	./z_demo < ../Demo/Matrix/can___24.mtx > tmp/demo_can24.out
	./z_demo < ../Demo/Matrix/c.tri        > tmp/demo_c.out
	./z_demo < ../Demo/Matrix/d.tri        > tmp/demo_d.out
	./z_demo < ../Demo/Matrix/up.tri       > tmp/demo_up.out
	./z_demo < ../Demo/Matrix/c.mtx        > tmp/demo_c_mtx.out
	./z_demo < ../Demo/Matrix/0.tri        > tmp/demo_0.out
	./z_demo < Matrix/3_2                  > tmp/demo_3_2.out
	./z_demo < Matrix/c5lo                 > tmp/demo_c5lo.out
	./z_demo < Matrix/c10                  > tmp/demo_c10.out
	./z_demo no_such_file                  > tmp/demo_no_such_file.out
	./z_demo ../Demo/Matrix/mangle1.mtx    > tmp/demo_mangle1.out
	./z_demo ../Demo/Matrix/mangle2.mtx    > tmp/demo_mangle2.out
	./z_demo ../Demo/Matrix/mangle3.mtx    > tmp/demo_mangle3.out
	./z_demo ../Demo/Matrix/mangle4.mtx    > tmp/demo_mangle4.out
	./z_demo ../Demo/Matrix/pts5ldd03.mtx  >  tmp/demo_pts5ldd03.out
	./l_demo   ../Demo/Matrix/bcsstk01.tri > tmp/ldemo_k1.out
	./l_demo   ../Demo/Matrix/bcsstk02.tri > tmp/ldemo_k2.out
	./l_demo < ../Demo/Matrix/lp_afiro.tri > tmp/ldemo_afiro.out
	./l_demo < ../Demo/Matrix/can___24.mtx > tmp/ldemo_can24.out
	./l_demo < ../Demo/Matrix/c.tri        > tmp/ldemo_c.out
	./l_demo < ../Demo/Matrix/d.tri        > tmp/ldemo_d.out
	./l_demo < ../Demo/Matrix/up.tri       > tmp/ldemo_up.out
	./l_demo < ../Demo/Matrix/c.mtx        > tmp/ldemo_c_mtx.out
	./l_demo < ../Demo/Matrix/0.tri        > tmp/ldemo_0.out
	./l_demo < Matrix/3_2                  > tmp/ldemo_3_2.out
	./l_demo < Matrix/c5lo                 > tmp/ldemo_c5lo.out
	./l_demo < Matrix/c10                  > tmp/ldemo_c10.out
	./l_demo no_such_file                  > tmp/ldemo_no_such_file.out
	./l_demo ../Demo/Matrix/mangle1.mtx    > tmp/ldemo_mangle1.out
	./l_demo ../Demo/Matrix/mangle2.mtx    > tmp/ldemo_mangle2.out
	./l_demo ../Demo/Matrix/mangle3.mtx    > tmp/ldemo_mangle3.out
	./l_demo ../Demo/Matrix/mangle4.mtx    > tmp/ldemo_mangle4.out
	./l_demo ../Demo/Matrix/pts5ldd03.mtx  > tmp/ldemo_pts5ldd03.out
	- grep resid tmp/demo*
	./cmread no_such_file                  > tmp/no_such_file.out
	./cmread Matrix/crud1                  > tmp/crud1.out
	./cmread Matrix/crud2                  > tmp/crud2.out
	./cmread Matrix/fullcrud.mtx           > tmp/fullcrud.out
	./cmread Matrix/fullcrud1.mtx          > tmp/fullcrud1.out
	./cmread Matrix/fullcrud2.mtx          > tmp/fullcrud2.out
	./cmread Matrix/3by0.mtx               > tmp/3by0.out
	./cmread Matrix/fullrza.mtx            > tmp/fullrza.out
	./cmread Matrix/fullrsa.mtx            > tmp/fullrsa.out
	./cmread Matrix/fullcsa.mtx            > tmp/fullcsa.out
	./cmread Matrix/fullcza.mtx            > tmp/fullcza.out
	./cmread Matrix/fullcha.mtx            > tmp/fullcha.out
	./cmread Matrix/cha.mtx		       > tmp/cha.out
	./cmread Matrix/cza.mtx		       > tmp/cza.out
	./cmread Matrix/csa.mtx		       > tmp/csa.out
	./cmread Matrix/one                    > tmp/one.out
	./cmread Matrix/rza.mtx                > tmp/rza.out
	./cmread ../Demo/Matrix/mangle5.tri    > tmp/mangle5.out
	./cmread ../Demo/Matrix/mangle6.tri    > tmp/mangle6.out
	./cmread ../Demo/Matrix/mangle7.tri    > tmp/mangle6.out
	./cmread ../Demo/Matrix/mangle8.tri    > tmp/mangle8.out
	./cmread ../Demo/Matrix/empty.tri      > tmp/empty.out
	./cmread ../Demo/Matrix/one.tri        > tmp/one.out
	./cmread Matrix/plskz362.mtx           > tmp/plskz363.out
	./cmread Matrix/2diag.tri	       > tmp/2diag.out
	./cmread Matrix/r5lo    	       > tmp/r5lo.out
	./cmread Matrix/r5lo2    	       > tmp/r5lo2.out
	- diff tmp/r5lo.out tmp/r5lo2.out
	./cmread Matrix/cs.mtx	               > tmp/cs.out
	./cmread Matrix/2lo.tri	               > tmp/2lo.out
	./cmread Matrix/2.tri	               > tmp/2.out
	./cmread Matrix/2up.tri	               > tmp/2up.out
	./cmread Matrix/huge.tri	       > tmp/huge.out
	./cmread Matrix/1e99                   > tmp/1e99.out
	./clread no_such_file                  > tmp/l_no_such_file.out
	./clread Matrix/crud1                  > tmp/l_crud1.out
	./clread Matrix/crud2                  > tmp/l_crud2.out
	./clread Matrix/fullcrud.mtx           > tmp/l_fullcrud.out
	./clread Matrix/fullcrud1.mtx          > tmp/l_fullcrud1.out
	./clread Matrix/fullcrud2.mtx          > tmp/l_fullcrud2.out
	./clread Matrix/3by0.mtx               > tmp/l_3by0.out
	./clread Matrix/fullrza.mtx            > tmp/l_fullrza.out
	./clread Matrix/fullrsa.mtx            > tmp/l_fullrsa.out
	./clread Matrix/fullcsa.mtx            > tmp/l_fullcsa.out
	./clread Matrix/fullcza.mtx            > tmp/l_fullcza.out
	./clread Matrix/fullcha.mtx            > tmp/l_fullcha.out
	./clread Matrix/cha.mtx		       > tmp/l_cha.out
	./clread Matrix/cza.mtx		       > tmp/l_cza.out
	./clread Matrix/csa.mtx		       > tmp/l_csa.out
	./clread Matrix/one		       > tmp/l_one.out
	./clread Matrix/rza.mtx                > tmp/l_rza.out
	./clread ../Demo/Matrix/mangle5.tri    > tmp/l_mangle5.out
	./clread ../Demo/Matrix/mangle6.tri    > tmp/l_mangle6.out
	./clread ../Demo/Matrix/mangle7.tri    > tmp/l_mangle6.out
	./clread ../Demo/Matrix/mangle8.tri    > tmp/l_mangle8.out
	./clread ../Demo/Matrix/empty.tri      > tmp/l_empty.out
	./clread ../Demo/Matrix/one.tri        > tmp/l_one.out
	./clread Matrix/plskz362.mtx           > tmp/l_plskz363.out
	./clread Matrix/2diag.tri	       > tmp/l_2diag.out
	./clread Matrix/r5lo    	       > tmp/l_r5lo.out
	./clread Matrix/r5lo2    	       > tmp/l_r5lo2.out
	- diff tmp/r5lo.out tmp/r5lo2.out
	./clread Matrix/cs.mtx	               > tmp/l_cs.out
	./clread Matrix/2lo.tri	               > tmp/l_l_2lo.out
	./clread Matrix/2.tri	               > tmp/l_2.out
	./clread Matrix/2up.tri	               > tmp/l_2up.out
	./clread Matrix/huge.tri               > tmp/l_huge.out
	./clread Matrix/1e99                   > tmp/l_1e99.out
	./cm    < Matrix/galenet > tmp/galenet.out
	./cl    < Matrix/galenet > tmp/l_galenet.out
	- ./covall
	./cm    < Matrix/5by50   > tmp/5by50.out
	./cl    < Matrix/5by50   > tmp/l_5by50.out
	- ./covall
	./cm    < Matrix/r5lo    > tmp/r5lo.out 
	./cl    < Matrix/r5lo    > tmp/l_r5lo.out
	./cm    < Matrix/r5up    > tmp/r5up.out
	./cl    < Matrix/r5up    > tmp/l_r5up.out
	./cm    < Matrix/r5up2   > tmp/r5up2.out
	./cl    < Matrix/r5up2   > tmp/l_r5up2.out
	./cm    < Matrix/c5up2   > tmp/c5up2.out
	./cl    < Matrix/c5up2   > tmp/l_c5up2.out
	./cm    < Matrix/z5up2   > tmp/z5up2.out
	./cl    < Matrix/z5up2   > tmp/l_z5up2.out
	./cm -m < Matrix/z5lo    > tmp/z5lo.out
	./cl -m < Matrix/z5lo    > tmp/l_z5lo.out
	./cm    < Matrix/ibm32   > tmp/ibm.out
	./cl    < Matrix/ibm32   > tmp/l_ibm.out
	- ./covall
	./cm -m < Matrix/c5lo    > tmp/c5lo.out
	./cl -m < Matrix/c5lo    > tmp/l_c5lo.out
	./cm -m < Matrix/z10     > tmp/z10.out
	./cl -m < Matrix/z10     > tmp/l_z10.out
	./cm -m < Matrix/z5up    > tmp/z5up.out
	./cl -m < Matrix/z5up    > tmp/l_z5up.out
	- ./covall
	./cm -s < Matrix/3singular  > tmp/3singular.out
	./cl -s < Matrix/3singular  > tmp/l_3singular.out
	./cm -s < Matrix/z3singular > tmp/z3singular.out
	./cl -s < Matrix/z3singular > tmp/l_z3singular.out
	./cm -s < Matrix/c3singular > tmp/c3singular.out
	./cl -s < Matrix/c3singular > tmp/l_c3singular.out
	./cm -m < Matrix/0       > tmp/0.out
	./cl -m < Matrix/0       > tmp/l_0.out
	./cm -m < Matrix/afiro   > tmp/afiro.out
	./cl -m < Matrix/afiro   > tmp/l_afiro.out
	- ./covall
	./cm -m < Matrix/k01up   > tmp/k01up.out
	./cl -m < Matrix/k01up   > tmp/l_k01up.out
	- ./covall
	./cm    < Matrix/diag    > tmp/diag.out
	./cl    < Matrix/diag    > tmp/l_diag.out
	./cm -m < Matrix/ex5lo   > tmp/ex5lo.out
	./cl -m < Matrix/ex5lo   > tmp/l_ex5lo.out
	- ./covall
	./cm    < Matrix/20lo    > tmp/20lo.out
	./cl    < Matrix/20lo    > tmp/l_20lo.out
	./cm    < Matrix/z30lo   > tmp/z30lo.out
	./cl    < Matrix/z30lo   > tmp/l_z30lo.out
	- ./covall
	./cm -m < Matrix/z30up   > tmp/z30up.out
	./cl -m < Matrix/z30up   > tmp/l_z30up.out
	./cm    < Matrix/c10     > tmp/c10.out
	./cl    < Matrix/c10     > tmp/l_c10.out
	./cm    < Matrix/c30lo   > tmp/c30lo.out
	./cl    < Matrix/c30lo   > tmp/l_c30lo.out
	- ./covall
	./cm -m < Matrix/c30up   > tmp/c30up.out
	./cl -m < Matrix/c30up   > tmp/l_c30up.out
	./cm    < Matrix/pi      > tmp/pi.out
	./cl    < Matrix/pi      > tmp/l_pi.out
	./cm    < Matrix/cpi     > tmp/cpi.out
	./cl    < Matrix/cpi     > tmp/l_cpi.out
	./cm    < Matrix/1_0     > tmp/1_0.out
	./cl    < Matrix/1_0     > tmp/l_1_0.out
	./cm -s < Matrix/3b      > tmp/3b.out
	./cl -s < Matrix/3b      > tmp/l_3b.out
	./cm -s < Matrix/cza     > tmp/cza2.out
	./cl -s < Matrix/cza     > tmp/l_cza2.out
	./cm    < Matrix/0_1     > tmp/0_1.out
	./cl    < Matrix/0_1     > tmp/l_0_1.out
	- ./covall
	./cm -n < Matrix/galenet > tmp/galenet_nan.out
	- ./covall
	./cl -n < Matrix/galenet > tmp/l_galenet_nan.out
	- ./covall
	./cm    < Matrix/a1      > tmp/a1.out
	- ./covall
	./cl    < Matrix/a1      > tmp/l_a1.out
	- ./covall
	./cm    < Matrix/zero    > tmp/zero.out
	./cl    < Matrix/zero    > tmp/zero.out
	- ./covall






doall: links go

links:
	touch links
	ln -s ../Tcov/amdtest.c
	ln -s ../Tcov/aug.c
	ln -s ../Tcov/camdtest.c
	ln -s ../Tcov/cctest.c
	ln -s ../Tcov/cm.c
	ln -s ../Tcov/cm.h
	ln -s ../Tcov/cmread.c
	ln -s ../Tcov/ctest.c
	ln -s ../Tcov/huge.c
	ln -s ../Tcov/leak.c
	ln -s ../Tcov/lpdemo.c
	ln -s ../Tcov/memory.c
	ln -s ../Tcov/null2.c
	ln -s ../Tcov/null.c
	ln -s ../Tcov/raw_factor.c
	ln -s ../Tcov/solve.c
	ln -s ../Tcov/test_ops.c
	ln -s ../Tcov/unpack.c
	ln -s ../Tcov/comments.txt
	ln -s ../Tcov/Matrix

include ../Tcov/Makefile

dopurge: distclean
	- $(RM) amdtest.c aug.c camdtest.c cctest.c cm.c cm.h cmread.c \
	    ctest.c huge.c leak.c lpdemo.c memory.c null2.c null.c \
	    raw_factor.c solve.c test_ops.c unpack.c comments.txt \
	    links Matrix





AC_INIT(cholmod, 1.5.0, davis@cise.ufl.edu)
AM_INIT_AUTOMAKE([foreign])
AC_PROG_INSTALL
AC_PROG_LIBTOOL
AC_CHECK_LIB(m, sqrt)
AC_CHECK_HEADERS(UFconfig.h)


AC_ARG_ENABLE(metis, 
    [AC_HELP_STRING([--enable-metis],
    [link against and use metis package])],
    [enable_metis=$enableval],
    [enable_metis="yes"])
AC_MSG_RESULT($enable_metis)

# By default, cholmod will build with support for metis
# Makefiles need to know for linking.
if test x$enable_metis = xno; then
    AC_DEFINE(NPARTITION)
else
    AC_CHECK_HEADERS(metis.h)
    AC_CHECK_LIB( metis, libmetis__InitTimers, [], \
        [ echo "ERROR:  Cannot find libmetis!"
          exit 1
        ] )

    AC_CHECK_HEADERS(ccolamd.h)
    AC_CHECK_LIB( ccolamd, ccolamd_report, [], \
        [ echo "ERROR: Cannot find libccolamd!"
          exit 1
        ] )

    AC_CHECK_HEADERS(camd.h)
    AC_CHECK_LIB( camd, camd_info, [], \
        [ echo "ERROR: Cannot find libcamd!"
          exit 1
        ] )
fi
AM_CONDITIONAL([ENABLE_METIS], [test x$enable_metis = xyes] )

AC_CHECK_HEADERS( amd.h )
AC_CHECK_LIB( amd, amd_info, [], \
    [ echo "ERROR:  Cannot find libamd!"
      exit 1
    ] )

AC_CHECK_HEADERS( colamd.h )
AC_CHECK_LIB( colamd, colamd_recommended, [], \
    [ echo "ERROR:  Cannot find libcolamd!"
      exit 1
    ] )

AC_CONFIG_FILES(
    Makefile \
    Check/Makefile \
    Cholesky/Makefile \
    Core/Makefile \
    MatrixOps/Makefile \
    Modify/Makefile \
	Partition/Makefile \
    Supernodal/Makefile \
	Demo/Makefile \
    Lib/Makefile \
    Tcov/Makefile )
AC_OUTPUT


Return to bug 173900

Line 0 Link Here

(-)CHOLMOD_orig/Cholesky/Makefile.am (+17 lines)
	1	AM_CPPFLAGS = -I$(top_srcdir)/Include
	2	noinst_LTLIBRARIES = libcholesky.la libcholeskyl.la
	3	libcholesky_la_SOURCES = cholmod_amd.c \
	4	cholmod_analyze.c \
	5	cholmod_colamd.c \
	6	cholmod_etree.c \
	7	cholmod_factorize.c \
	8	cholmod_postorder.c \
	9	cholmod_rcond.c \
	10	cholmod_resymbol.c \
	11	cholmod_rowcolcounts.c \
	12	cholmod_rowfac.c \
	13	cholmod_solve.c \
	14	cholmod_spsolve.c
	15
	16	libcholeskyl_la_SOURCES = $(libcholesky_la_SOURCES)
	17	libcholeskyl_la_CFLAGS = -DDLONG

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(-)CHOLMOD_orig/Core/Makefile.am (+19 lines)
	1	AM_CPPFLAGS = -I$(top_srcdir)/Include
	2	noinst_LTLIBRARIES = libcore.la libcorel.la
	3	libcore_la_SOURCES = cholmod_aat.c \
	4	cholmod_add.c \
	5	cholmod_band.c \
	6	cholmod_change_factor.c \
	7	cholmod_common.c \
	8	cholmod_complex.c \
	9	cholmod_copy.c \
	10	cholmod_dense.c \
	11	cholmod_error.c \
	12	cholmod_factor.c \
	13	cholmod_memory.c \
	14	cholmod_sparse.c \
	15	cholmod_transpose.c \
	16	cholmod_triplet.c
	17
	18	libcorel_la_SOURCES = $(libcore_la_SOURCES)
	19	libcorel_la_CFLAGS = -DDLONG

Lines 1-85 Link Here

(-)CHOLMOD_orig/Demo/Makefile (-85 lines)
1	#===============================================================================
2	# CHOLMOD/Demo/Makefile
3	#===============================================================================
4
5	# If you compile CHOLMOD with -DNPARTITION, then you do not need METIS or
6	# CCOLAMD.
7
8	default: all
9
10	include ../../UFconfig/UFconfig.mk
11
12	#-------------------------------------------------------------------------------
13	# With METIS, CCOLAMD, CAMD, and the Partition Module:
14	LIB2 = ../Lib/libcholmod.a ../../AMD/Lib/libamd.a ../../COLAMD/Lib/libcolamd.a \
15	../../CCOLAMD/Lib/libccolamd.a ../../CAMD/Lib/libcamd.a \
16	$(METIS) $(LAPACK) $(BLAS) $(XERBLA) $(LIB)
17	# Use this instead, if you compile with -DNPARTITION:
18	# LIB2 = ../Lib/libcholmod.a ../../AMD/Lib/libamd.a ../../COLAMD/libcolamd.a \
19	$(LAPACK) $(BLAS) $(XERBLA) $(LIB)
20	#-------------------------------------------------------------------------------
21
22	C = $(CC) $(CFLAGS) $(CHOLMOD_CONFIG)
23
24	code: library cholmod_demo cholmod_l_demo cholmod_simple
25
26	fortran: readhb readhb2 reade
27
28	all: code
29	./cholmod_demo < Matrix/bcsstk01.tri
30	./cholmod_l_demo < Matrix/bcsstk01.tri
31	./cholmod_demo < Matrix/lp_afiro.tri
32	./cholmod_l_demo < Matrix/lp_afiro.tri
33	./cholmod_demo < Matrix/can___24.mtx
34	./cholmod_l_demo < Matrix/can___24.mtx
35	./cholmod_demo < Matrix/c.tri
36	./cholmod_l_demo < Matrix/c.tri
37	./cholmod_simple < Matrix/c.tri
38	./cholmod_simple < Matrix/can___24.mtx
39	./cholmod_simple < Matrix/bcsstk01.tri
40
41	distclean: purge
42
43	purge: clean
44	- $(RM) cholmod_demo cholmod_l_demo readhb readhb2 reade
45	- $(RM) cholmod_simple
46
47	clean:
48	- $(RM) $(CLEAN)
49
50	#-------------------------------------------------------------------------------
51	# See below if you compile with -DNPARTITION
52	library:
53	( cd ../../UFconfig/xerbla ; $(MAKE) )
54	( cd ../Lib ; $(MAKE) )
55	( cd ../../AMD ; $(MAKE) library )
56	( cd ../../CAMD ; $(MAKE) library )
57	( cd ../../COLAMD ; $(MAKE) library )
58	( cd ../../CCOLAMD ; $(MAKE) library )
59	# use this rule instead, if you compile with -DNPARTITION:
60	# library:
61	# ( cd ../../UFconfig/xerbla ; $(MAKE) )
62	# ( cd ../Lib ; $(MAKE) )
63	# ( cd ../../AMD ; $(MAKE) library )
64	# ( cd ../../COLAMD ; $(MAKE) )
65	#-------------------------------------------------------------------------------
66
67	I = -I../Include -I../../UFconfig
68
69	cholmod_demo: library cholmod_demo.c cholmod_demo.h
70	$(C) -o cholmod_demo $(I) cholmod_demo.c $(LIB2)
71
72	cholmod_simple: library cholmod_simple.c
73	$(C) -o cholmod_simple $(I) cholmod_simple.c $(LIB2)
74
75	cholmod_l_demo: library cholmod_l_demo.c cholmod_demo.h
76	$(C) -o cholmod_l_demo $(I) cholmod_l_demo.c $(LIB2)
77
78	readhb: readhb.f
79	$(F77) $(FFLAGS) -o readhb readhb.f
80
81	readhb2: readhb2.f
82	$(F77) $(FFLAGS) -O -o readhb2 readhb2.f
83
84	reade: reade.f
85	$(F77) $(FFLAGS) -O -o reade reade.f

Line 0 Link Here

(-)CHOLMOD_orig/Demo/Makefile.am (+25 lines)
	1	AM_CPPFLAGS = -I$(top_srcdir)/Include
	2	AM_LDFLAGS = -L$(top_builddir)/Lib -lcholmod -lamd -lcolamd -lblas -llapack
	3
	4	if ENABLE_METIS
	5	AM_LDFLAGS += -lcamd -lccolamd -lmetis
	6	endif
	7	check_PROGRAMS = cholmod_demo cholmod_l_demo cholmod_simple
	8	cholmod_demo_SOURCES = cholmod_demo.c
	9	cholmod_l_demo_SOURCES = cholmod_l_demo.c
	10	cholmod_simple_SOURCES = cholmod_simple.c
	11
	12	test: check
	13	./cholmod_demo < Matrix/bcsstk01.tri \|\| exit 1
	14	./cholmod_l_demo < Matrix/bcsstk01.tri \|\| exit 1
	15	./cholmod_demo < Matrix/lp_afiro.tri \|\| exit 1
	16	./cholmod_l_demo < Matrix/lp_afiro.tri \|\| exit 1
	17	./cholmod_demo < Matrix/can___24.mtx \|\| exit 1
	18	./cholmod_l_demo < Matrix/can___24.mtx \|\| exit 1
	19	./cholmod_demo < Matrix/c.tri \|\| exit 1
	20	./cholmod_l_demo < Matrix/c.tri \|\| exit 1
	21	./cholmod_simple < Matrix/c.tri \|\| exit 1
	22	./cholmod_simple < Matrix/can___24.mtx \|\| exit 1
	23	./cholmod_simple < Matrix/bcsstk01.tri \|\| exit 1
	24
	25

Lines 1-225 Link Here

(-)CHOLMOD_orig/Doc/Makefile (-225 lines)
1	default: all
2
3	include ../../UFconfig/UFconfig.mk
4
5	all: UserGuide.pdf
6
7	I = \
8	../Include/cholmod.h \
9	../Include/cholmod_blas.h \
10	../Include/cholmod_check.h \
11	../Include/cholmod_cholesky.h \
12	../Include/cholmod_complexity.h \
13	../Include/cholmod_config.h \
14	../Include/cholmod_core.h \
15	../Include/cholmod_internal.h \
16	../Include/cholmod_matrixops.h \
17	../Include/cholmod_modify.h \
18	../Include/cholmod_partition.h \
19	../Include/cholmod_supernodal.h \
20	../Include/cholmod_template.h
21
22	C = ../Demo/cholmod_simple.c
23
24	M = \
25	../MATLAB/analyze.m \
26	../MATLAB/bisect.m \
27	../MATLAB/chol2.m \
28	../MATLAB/cholmod2.m \
29	../MATLAB/cholmod_demo.m \
30	../MATLAB/cholmod_make.m \
31	../MATLAB/etree2.m \
32	../MATLAB/graph_demo.m \
33	../MATLAB/lchol.m \
34	../MATLAB/ldlchol.m \
35	../MATLAB/ldl_normest.m \
36	../MATLAB/ldlsolve.m \
37	../MATLAB/ldlsplit.m \
38	../MATLAB/ldlupdate.m \
39	../MATLAB/metis.m \
40	../MATLAB/nesdis.m \
41	../MATLAB/resymbol.m \
42	../MATLAB/sdmult.m \
43	../MATLAB/sparse2.m \
44	../MATLAB/spsym.m \
45	../MATLAB/mread.m \
46	../MATLAB/mwrite.m \
47	../MATLAB/symbfact2.m
48
49	UserGuide.pdf: UserGuide.tex UserGuide.bib $(I) $(C) $(M) Makefile getproto rule.awk header.tex footer.tex getmproto mfooter.tex mheader.tex mfile.awk
50	./getmproto ../MATLAB/analyze.m > _analyze_m.tex
51	./getmproto ../MATLAB/bisect.m > _bisect_m.tex
52	./getmproto ../MATLAB/chol2.m > _chol2_m.tex
53	./getmproto ../MATLAB/cholmod2.m > _cholmod2_m.tex
54	./getmproto ../MATLAB/cholmod_demo.m > _cholmod_demo_m.tex
55	./getmproto ../MATLAB/cholmod_make.m > _cholmod_make_m.tex
56	./getmproto ../MATLAB/etree2.m > _etree2_m.tex
57	./getmproto ../MATLAB/graph_demo.m > _graph_demo_m.tex
58	./getmproto ../MATLAB/lchol.m > _lchol_m.tex
59	./getmproto ../MATLAB/ldlchol.m > _ldlchol_m.tex
60	./getmproto ../MATLAB/ldl_normest.m > _ldl_normest_m.tex
61	./getmproto ../MATLAB/ldlsolve.m > _ldlsolve_m.tex
62	./getmproto ../MATLAB/ldlsplit.m > _ldlsplit_m.tex
63	./getmproto ../MATLAB/ldlupdate.m > _ldlupdate_m.tex
64	./getmproto ../MATLAB/metis.m > _metis_m.tex
65	./getmproto ../MATLAB/mread.m > _mread_m.tex
66	./getmproto ../MATLAB/spsym.m > _spsym_m.tex
67	./getmproto ../MATLAB/mwrite.m > _mwrite_m.tex
68	./getmproto ../MATLAB/nesdis.m > _nesdis_m.tex
69	./getmproto ../MATLAB/resymbol.m > _resymbol_m.tex
70	./getmproto ../MATLAB/sdmult.m > _sdmult_m.tex
71	./getmproto ../MATLAB/sparse2.m > _sparse2_m.tex
72	./getmproto ../MATLAB/symbfact2.m > _symbfact2_m.tex
73	./getproto '/include/, /^}/' ../Demo/cholmod_simple.c > _simple.tex
74	./getproto '/typedef struct cholmod_common/, /^}/' ../Include/cholmod_core.h > _common.tex
75	./getproto '/int cholmod_start/, /\*\) ;/' ../Include/cholmod_core.h > _start.tex
76	./getproto '/int cholmod_finish/, /\*\) ;/' ../Include/cholmod_core.h > _finish.tex
77	./getproto '/int cholmod_defaults/, /\*\) ;/' ../Include/cholmod_core.h > _defaults.tex
78	./getproto '/size_t cholmod_maxrank/, /\*\) ;/' ../Include/cholmod_core.h > _maxrank.tex
79	./getproto '/int cholmod_allocate_work/, /\*\) ;/' ../Include/cholmod_core.h > _allocate_work.tex
80	./getproto '/int cholmod_free_work/, /\*\) ;/' ../Include/cholmod_core.h > _free_work.tex
81	./getproto '/long cholmod_clear_flag/, /\*\) ;/' ../Include/cholmod_core.h > _clear_flag.tex
82	./getproto '/int cholmod_error/, /\*\) ;/' ../Include/cholmod_core.h > _error.tex
83	./getproto '/double cholmod_dbound/, /\*\) ;/' ../Include/cholmod_core.h > _dbound.tex
84	./getproto '/double cholmod_hypot/, /double\) ;/' ../Include/cholmod_core.h > _hypot.tex
85	./getproto '/int cholmod_divcomplex/, /\*\) ;/' ../Include/cholmod_core.h > _divcomplex.tex
86	./getproto '/typedef struct cholmod_sparse/, /^}/' ../Include/cholmod_core.h > _sparse.tex
87	./getproto '/cholmod_sparse \cholmod_allocate_sparse/, /\\) ;/' ../Include/cholmod_core.h > _allocate_sparse.tex
88	./getproto '/int cholmod_free_sparse/, /\*\) ;/' ../Include/cholmod_core.h > _free_sparse.tex
89	./getproto '/int cholmod_reallocate_sparse/, /\*\) ;/' ../Include/cholmod_core.h > _reallocate_sparse.tex
90	./getproto '/long cholmod_nnz/, /\*\) ;/' ../Include/cholmod_core.h > _nnz.tex
91	./getproto '/cholmod_sparse \cholmod_speye/, /\\) ;/' ../Include/cholmod_core.h > _speye.tex
92	./getproto '/cholmod_sparse \cholmod_spzeros/, /\\) ;/' ../Include/cholmod_core.h > _spzeros.tex
93	./getproto '/cholmod_sparse \cholmod_transpose/, /\\) ;/' ../Include/cholmod_core.h > _transpose.tex
94	./getproto '/int cholmod_transpose_unsym/, /\*\) ;/' ../Include/cholmod_core.h > _transpose_unsym.tex
95	./getproto '/int cholmod_transpose_sym/, /\*\) ;/' ../Include/cholmod_core.h > _transpose_sym.tex
96	./getproto '/cholmod_sparse \cholmod_ptranspose/, /\\) ;/' ../Include/cholmod_core.h > _ptranspose.tex
97	./getproto '/int cholmod_sort/, /\*\) ;/' ../Include/cholmod_core.h > _sort.tex
98	./getproto '/cholmod_sparse \cholmod_band/, /\\) ;/' ../Include/cholmod_core.h > _band.tex
99	./getproto '/int cholmod_band_inplace/, /\*\) ;/' ../Include/cholmod_core.h > _band_inplace.tex
100	./getproto '/cholmod_sparse \cholmod_aat/, /\\) ;/' ../Include/cholmod_core.h > _aat.tex
101	./getproto '/cholmod_sparse \cholmod_copy_sparse/, /\\) ;/' ../Include/cholmod_core.h > _copy_sparse.tex
102	./getproto '/cholmod_sparse \cholmod_copy /, /\\) ;/' ../Include/cholmod_core.h > _copy.tex
103	./getproto '/cholmod_sparse \cholmod_add/, /\\) ;/' ../Include/cholmod_core.h > _add.tex
104	./getproto '/int cholmod_sparse_xtype/, /\*\) ;/' ../Include/cholmod_core.h > _sparse_xtype.tex
105	./getproto '/typedef struct cholmod_factor/, /^}/' ../Include/cholmod_core.h > _factor.tex
106	./getproto '/cholmod_factor \cholmod_allocate_factor/, /\\) ;/' ../Include/cholmod_core.h > _allocate_factor.tex
107	./getproto '/int cholmod_free_factor/, /\*\) ;/' ../Include/cholmod_core.h > _free_factor.tex
108	./getproto '/int cholmod_reallocate_factor/, /\*\) ;/' ../Include/cholmod_core.h > _reallocate_factor.tex
109	./getproto '/int cholmod_change_factor/, /\*\) ;/' ../Include/cholmod_core.h > _change_factor.tex
110	./getproto '/int cholmod_pack_factor/, /\*\) ;/' ../Include/cholmod_core.h > _pack_factor.tex
111	./getproto '/int cholmod_reallocate_column/, /\*\) ;/' ../Include/cholmod_core.h > _reallocate_column.tex
112	./getproto '/cholmod_sparse \cholmod_factor_to_sparse/, /\\) ;/' ../Include/cholmod_core.h > _factor_to_sparse.tex
113	./getproto '/cholmod_factor \cholmod_copy_factor/, /\\) ;/' ../Include/cholmod_core.h > _copy_factor.tex
114	./getproto '/int cholmod_factor_xtype/, /\*\) ;/' ../Include/cholmod_core.h > _factor_xtype.tex
115	./getproto '/typedef struct cholmod_dense/, /^}/' ../Include/cholmod_core.h > _dense.tex
116	./getproto '/cholmod_dense \cholmod_allocate_dense/, /\\) ;/' ../Include/cholmod_core.h > _allocate_dense.tex
117	./getproto '/cholmod_dense \cholmod_zeros/, /\\) ;/' ../Include/cholmod_core.h > _zeros.tex
118	./getproto '/cholmod_dense \cholmod_ones/, /\\) ;/' ../Include/cholmod_core.h > _ones.tex
119	./getproto '/cholmod_dense \cholmod_eye/, /\\) ;/' ../Include/cholmod_core.h > _eye.tex
120	./getproto '/int cholmod_free_dense/, /\*\) ;/' ../Include/cholmod_core.h > _free_dense.tex
121	./getproto '/cholmod_dense \cholmod_sparse_to_dense/, /\\) ;/' ../Include/cholmod_core.h > _sparse_to_dense.tex
122	./getproto '/cholmod_sparse \cholmod_dense_to_sparse/, /\\) ;/' ../Include/cholmod_core.h > _dense_to_sparse.tex
123	./getproto '/cholmod_dense \cholmod_copy_dense/, /\\) ;/' ../Include/cholmod_core.h > _copy_dense.tex
124	./getproto '/int cholmod_copy_dense2/, /\*\) ;/' ../Include/cholmod_core.h > _copy_dense2.tex
125	./getproto '/int cholmod_dense_xtype/, /\*\) ;/' ../Include/cholmod_core.h > _dense_xtype.tex
126	./getproto '/typedef struct cholmod_triplet/, /^}/' ../Include/cholmod_core.h > _triplet.tex
127	./getproto '/cholmod_triplet \cholmod_allocate_triplet/, /\\) ;/' ../Include/cholmod_core.h > _allocate_triplet.tex
128	./getproto '/int cholmod_free_triplet/, /\*\) ;/' ../Include/cholmod_core.h > _free_triplet.tex
129	./getproto '/int cholmod_reallocate_triplet/, /\*\) ;/' ../Include/cholmod_core.h > _reallocate_triplet.tex
130	./getproto '/cholmod_triplet \cholmod_sparse_to_triplet/, /\\) ;/' ../Include/cholmod_core.h > _sparse_to_triplet.tex
131	./getproto '/cholmod_sparse \cholmod_triplet_to_sparse/, /\\) ;/' ../Include/cholmod_core.h > _triplet_to_sparse.tex
132	./getproto '/cholmod_triplet \cholmod_copy_triplet/, /\\) ;/' ../Include/cholmod_core.h > _copy_triplet.tex
133	./getproto '/int cholmod_triplet_xtype/, /\*\) ;/' ../Include/cholmod_core.h > _triplet_xtype.tex
134	./getproto '/void \cholmod_malloc/, /\\) ;/' ../Include/cholmod_core.h > _malloc.tex
135	./getproto '/void \cholmod_calloc/, /\\) ;/' ../Include/cholmod_core.h > _calloc.tex
136	./getproto '/void \cholmod_free/, /\\) ;/' ../Include/cholmod_core.h > _free.tex
137	./getproto '/void \cholmod_realloc/, /\\) ;/' ../Include/cholmod_core.h > _realloc.tex
138	./getproto '/int cholmod_realloc_multiple/, /\*\) ;/' ../Include/cholmod_core.h > _realloc_multiple.tex
139	./getproto '/itype defines the/, /define CHOLMOD_SUPERNODAL/' ../Include/cholmod_core.h > _defn.tex
140	./getproto '/int cholmod_check_common/, /\*\) ;/' ../Include/cholmod_check.h > _check_common.tex
141	./getproto '/int cholmod_print_common/, /\*\) ;/' ../Include/cholmod_check.h > _print_common.tex
142	./getproto '/int cholmod_check_sparse/, /\*\) ;/' ../Include/cholmod_check.h > _check_sparse.tex
143	./getproto '/int cholmod_print_sparse/, /\*\) ;/' ../Include/cholmod_check.h > _print_sparse.tex
144	./getproto '/int cholmod_check_dense/, /\*\) ;/' ../Include/cholmod_check.h > _check_dense.tex
145	./getproto '/int cholmod_print_dense/, /\*\) ;/' ../Include/cholmod_check.h > _print_dense.tex
146	./getproto '/int cholmod_check_factor/, /\*\) ;/' ../Include/cholmod_check.h > _check_factor.tex
147	./getproto '/int cholmod_print_factor/, /\*\) ;/' ../Include/cholmod_check.h > _print_factor.tex
148	./getproto '/int cholmod_check_triplet/, /\*\) ;/' ../Include/cholmod_check.h > _check_triplet.tex
149	./getproto '/int cholmod_print_triplet/, /\*\) ;/' ../Include/cholmod_check.h > _print_triplet.tex
150	./getproto '/int cholmod_check_subset/, /\*\) ;/' ../Include/cholmod_check.h > _check_subset.tex
151	./getproto '/int cholmod_print_subset/, /\*\) ;/' ../Include/cholmod_check.h > _print_subset.tex
152	./getproto '/int cholmod_check_perm/, /\*\) ;/' ../Include/cholmod_check.h > _check_perm.tex
153	./getproto '/int cholmod_print_perm/, /\*\) ;/' ../Include/cholmod_check.h > _print_perm.tex
154	./getproto '/int cholmod_check_parent/, /\*\) ;/' ../Include/cholmod_check.h > _check_parent.tex
155	./getproto '/int cholmod_print_parent/, /\*\) ;/' ../Include/cholmod_check.h > _print_parent.tex
156	./getproto '/cholmod_triplet \cholmod_read_triplet/, /\\) ;/' ../Include/cholmod_check.h > _read_triplet.tex
157	./getproto '/cholmod_sparse \cholmod_read_sparse/, /\\) ;/' ../Include/cholmod_check.h > _read_sparse.tex
158	./getproto '/cholmod_dense \cholmod_read_dense/, /\\) ;/' ../Include/cholmod_check.h > _read_dense.tex
159	./getproto '/void \cholmod_read_matrix/, /\\) ;/' ../Include/cholmod_check.h > _read_matrix.tex
160	./getproto '/int cholmod_write_sparse/, /\*\) ;/' ../Include/cholmod_check.h > _write_sparse.tex
161	./getproto '/int cholmod_write_dense/, /\*\) ;/' ../Include/cholmod_check.h > _write_dense.tex
162	./getproto '/cholmod_factor \cholmod_analyze /, /\\) ;/' ../Include/cholmod_cholesky.h > _analyze.tex
163	./getproto '/cholmod_factor \cholmod_analyze_p/, /\\) ;/' ../Include/cholmod_cholesky.h > _analyze_p.tex
164	./getproto '/int cholmod_factorize /, /\*\) ;/' ../Include/cholmod_cholesky.h > _factorize.tex
165	./getproto '/int cholmod_factorize_p/, /\*\) ;/' ../Include/cholmod_cholesky.h > _factorize_p.tex
166	./getproto '/cholmod_dense \cholmod_solve/, /\\) ;/' ../Include/cholmod_cholesky.h > _solve.tex
167	./getproto '/cholmod_sparse \cholmod_spsolve/, /\\) ;/' ../Include/cholmod_cholesky.h > _spsolve.tex
168	./getproto '/int cholmod_etree/, /\*\) ;/' ../Include/cholmod_cholesky.h > _etree.tex
169	./getproto '/int cholmod_rowcolcounts/, /\*\) ;/' ../Include/cholmod_cholesky.h > _rowcolcounts.tex
170	./getproto '/int cholmod_analyze_ordering/, /\*\) ;/' ../Include/cholmod_cholesky.h > _analyze_ordering.tex
171	./getproto '/int cholmod_amd/, /\*\) ;/' ../Include/cholmod_cholesky.h > _amd.tex
172	./getproto '/int cholmod_colamd/, /\*\) ;/' ../Include/cholmod_cholesky.h > _colamd.tex
173	./getproto '/int cholmod_rowfac/, /\*\) ;/' ../Include/cholmod_cholesky.h > _rowfac.tex
174	./getproto '/int cholmod_rowfac_mask/, /\*\) ;/' ../Include/cholmod_cholesky.h > _rowfac_mask.tex
175	./getproto '/int cholmod_row_subtree/, /\*\) ;/' ../Include/cholmod_cholesky.h > _row_subtree.tex
176	./getproto '/int cholmod_row_lsubtree/, /\*\) ;/' ../Include/cholmod_cholesky.h > _row_lsubtree.tex
177	./getproto '/int cholmod_resymbol /, /\*\) ;/' ../Include/cholmod_cholesky.h > _resymbol.tex
178	./getproto '/int cholmod_resymbol_noperm/, /\*\) ;/' ../Include/cholmod_cholesky.h > _resymbol_noperm.tex
179	./getproto '/double cholmod_rcond/, /\*\) ;/' ../Include/cholmod_cholesky.h > _rcond.tex
180	./getproto '/long cholmod_postorder/, /\*\) ;/' ../Include/cholmod_cholesky.h > _postorder.tex
181	./getproto '/int cholmod_updown /, /\*\) ;/' ../Include/cholmod_modify.h > _updown.tex
182	./getproto '/int cholmod_updown_solve/, /\*\) ;/' ../Include/cholmod_modify.h > _updown_solve.tex
183	./getproto '/int cholmod_updown_mark/, /\*\) ;/' ../Include/cholmod_modify.h > _updown_mark.tex
184	./getproto '/int cholmod_updown_mask/, /\*\) ;/' ../Include/cholmod_modify.h > _updown_mask.tex
185	./getproto '/int cholmod_rowadd /, /\*\) ;/' ../Include/cholmod_modify.h > _rowadd.tex
186	./getproto '/int cholmod_rowadd_solve/, /\*\) ;/' ../Include/cholmod_modify.h > _rowadd_solve.tex
187	./getproto '/int cholmod_rowadd_mark/, /\*\) ;/' ../Include/cholmod_modify.h > _rowadd_mark.tex
188	./getproto '/int cholmod_rowdel /, /\*\) ;/' ../Include/cholmod_modify.h > _rowdel.tex
189	./getproto '/int cholmod_rowdel_solve/, /\*\) ;/' ../Include/cholmod_modify.h > _rowdel_solve.tex
190	./getproto '/int cholmod_rowdel_mark/, /\*\) ;/' ../Include/cholmod_modify.h > _rowdel_mark.tex
191	./getproto '/int cholmod_drop/, /\*\) ;/' ../Include/cholmod_matrixops.h > _drop.tex
192	./getproto '/double cholmod_norm_dense/, /\*\) ;/' ../Include/cholmod_matrixops.h > _norm_dense.tex
193	./getproto '/double cholmod_norm_sparse/, /\*\) ;/' ../Include/cholmod_matrixops.h > _norm_sparse.tex
194	./getproto '/cholmod_sparse \cholmod_horzcat/, /\\) ;/' ../Include/cholmod_matrixops.h > _horzcat.tex
195	./getproto '/define CHOLMOD_SCALAR/, /\*\) ;/' ../Include/cholmod_matrixops.h > _scale.tex
196	./getproto '/int cholmod_sdmult/, /\*\) ;/' ../Include/cholmod_matrixops.h > _sdmult.tex
197	./getproto '/cholmod_sparse \cholmod_ssmult/, /\\) ;/' ../Include/cholmod_matrixops.h > _ssmult.tex
198	./getproto '/cholmod_sparse \cholmod_submatrix/, /\\) ;/' ../Include/cholmod_matrixops.h > _submatrix.tex
199	./getproto '/cholmod_sparse \cholmod_vertcat/, /\\) ;/' ../Include/cholmod_matrixops.h > _vertcat.tex
200	./getproto '/int cholmod_symmetry/, /\*\) ;/' ../Include/cholmod_matrixops.h > _symmetry.tex
201	./getproto '/int cholmod_super_symbolic/, /\*\) ;/' ../Include/cholmod_supernodal.h > _super_symbolic.tex
202	./getproto '/int cholmod_super_numeric/, /\*\) ;/' ../Include/cholmod_supernodal.h > _super_numeric.tex
203	./getproto '/int cholmod_super_lsolve/, /\*\) ;/' ../Include/cholmod_supernodal.h > _super_lsolve.tex
204	./getproto '/int cholmod_super_ltsolve/, /\*\) ;/' ../Include/cholmod_supernodal.h > _super_ltsolve.tex
205	./getproto '/long cholmod_nested_dissection/, /\*\) ;/' ../Include/cholmod_partition.h > _nested_dissection.tex
206	./getproto '/int cholmod_metis/, /\*\) ;/' ../Include/cholmod_partition.h > _metis.tex
207	./getproto '/int cholmod_ccolamd/, /\*\) ;/' ../Include/cholmod_partition.h > _ccolamd.tex
208	./getproto '/int cholmod_camd/, /\*\) ;/' ../Include/cholmod_partition.h > _camd.tex
209	./getproto '/int cholmod_csymamd/, /\*\) ;/' ../Include/cholmod_partition.h > _csymamd.tex
210	./getproto '/int cholmod_csymamd/, /\*\) ;/' ../Include/cholmod_partition.h > _csymamd.tex
211	./getproto '/long cholmod_bisect/, /\*\) ;/' ../Include/cholmod_partition.h > _bisect.tex
212	./getproto '/long cholmod_metis_bisector/, /\*\) ;/' ../Include/cholmod_partition.h > _metis_bisector.tex
213	./getproto '/long cholmod_collapse_septree/, /\*\) ;/' ../Include/cholmod_partition.h > _collapse_septree.tex
214	pdflatex UserGuide
215	bibtex UserGuide
216	pdflatex UserGuide
217	pdflatex UserGuide
218
219	distclean: purge
220
221	purge: clean
222	- $(RM) _temp.awk _.tex .dvi .aux .log .lof .lot .toc .bak .bbl .blg
223
224	clean:
225	- $(RM) $(CLEAN)

Lines 1-472 Link Here

(-)CHOLMOD_orig/Lib/Makefile (-472 lines)
1	#===============================================================================
2	# CHOLOMD/Lib/Makefile: for compiling the CHOLMOD library
3	#===============================================================================
4
5	default: all
6
7	ccode: all
8
9	include ../../UFconfig/UFconfig.mk
10
11	C = $(CC) $(CFLAGS) $(CHOLMOD_CONFIG)
12
13	all: libcholmod.a
14
15	library: libcholmod.a
16
17	purge: distclean
18
19	distclean: clean
20	- $(RM) libcholmod.a
21
22	clean:
23	- $(RM) $(CLEAN)
24
25	#-------------------------------------------------------------------------------
26	# ../Include/ directory contains all include files:
27	#-------------------------------------------------------------------------------
28
29	INC = ../Include/cholmod.h \
30	../Include/cholmod_blas.h \
31	../Include/cholmod_check.h \
32	../Include/cholmod_cholesky.h \
33	../Include/cholmod_complexity.h \
34	../Include/cholmod_config.h \
35	../Include/cholmod_core.h \
36	../Include/cholmod_internal.h \
37	../Include/cholmod_matrixops.h \
38	../Include/cholmod_modify.h \
39	../Include/cholmod_partition.h \
40	../Include/cholmod_supernodal.h \
41	../Include/cholmod_template.h
42
43	#-------------------------------------------------------------------------------
44	# The 7 CHOLMOD library modules (int, double)
45	#-------------------------------------------------------------------------------
46
47	CORE = cholmod_aat.o cholmod_add.o cholmod_band.o \
48	cholmod_change_factor.o cholmod_common.o cholmod_complex.o \
49	cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o \
50	cholmod_memory.o cholmod_sparse.o \
51	cholmod_transpose.o cholmod_triplet.o
52
53	CHECK = cholmod_check.o cholmod_read.o cholmod_write.o
54
55	CHOLESKY = cholmod_amd.o cholmod_analyze.o cholmod_colamd.o \
56	cholmod_etree.o cholmod_factorize.o cholmod_postorder.o \
57	cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o \
58	cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o
59
60	MATRIXOPS = cholmod_drop.o cholmod_horzcat.o cholmod_norm.o \
61	cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o \
62	cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o
63
64	PARTITION = cholmod_ccolamd.o cholmod_csymamd.o \
65	cholmod_metis.o cholmod_nesdis.o cholmod_camd.o
66
67	MODIFY = cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o
68
69	SUPERNODAL = cholmod_super_numeric.o cholmod_super_solve.o \
70	cholmod_super_symbolic.o
71
72	DI = $(CORE) $(CHECK) $(CHOLESKY) $(MATRIXOPS) $(MODIFY) $(SUPERNODAL) \
73	$(PARTITION)
74
75	#-------------------------------------------------------------------------------
76	# CHOLMOD library modules (long, double)
77	#-------------------------------------------------------------------------------
78
79	LCORE = cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o \
80	cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o \
81	cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o \
82	cholmod_l_factor.o cholmod_l_memory.o \
83	cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o
84
85	LCHECK = cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o
86
87	LCHOLESKY = cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o \
88	cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o \
89	cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o \
90	cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o
91
92	LMATRIXOPS = cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o \
93	cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o \
94	cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o
95
96	LPARTITION = cholmod_l_ccolamd.o cholmod_l_csymamd.o \
97	cholmod_l_metis.o cholmod_l_nesdis.o cholmod_l_camd.o
98
99	LMODIFY = cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o
100
101	LSUPERNODAL = cholmod_l_super_numeric.o cholmod_l_super_solve.o \
102	cholmod_l_super_symbolic.o
103
104	DL = $(LCORE) $(LCHECK) $(LCHOLESKY) $(LMATRIXOPS) $(LMODIFY) $(LSUPERNODAL) \
105	$(LPARTITION)
106
107	#-------------------------------------------------------------------------------
108
109	# to compile just the double/int version, use OBJ = $(DI)
110	OBJ = $(DI) $(DL)
111
112	libcholmod.a: $(OBJ)
113	$(AR) libcholmod.a $(OBJ)
114	$(RANLIB) libcholmod.a
115
116	$(OBJ): $(INC)
117
118	I = -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include \
119	-I$(METIS_PATH)/Lib -I../../CCOLAMD/Include -I../../CAMD/Include \
120	-I../Include -I../../UFconfig
121
122	#-------------------------------------------------------------------------------
123	# Check Module:
124	#-------------------------------------------------------------------------------
125
126	cholmod_check.o: ../Check/cholmod_check.c
127	$(C) -c $(I) $<
128
129	cholmod_read.o: ../Check/cholmod_read.c
130	$(C) -c $(I) $<
131
132	cholmod_write.o: ../Check/cholmod_write.c
133	$(C) -c $(I) $<
134
135	#-------------------------------------------------------------------------------
136
137	cholmod_l_check.o: ../Check/cholmod_check.c
138	$(C) -DDLONG -c $(I) $< -o $@
139
140	cholmod_l_read.o: ../Check/cholmod_read.c
141	$(C) -DDLONG -c $(I) $< -o $@
142
143	cholmod_l_write.o: ../Check/cholmod_write.c
144	$(C) -DDLONG -c $(I) $< -o $@
145
146
147	#-------------------------------------------------------------------------------
148	# Core Module:
149	#-------------------------------------------------------------------------------
150
151	cholmod_common.o: ../Core/cholmod_common.c
152	$(C) -c $(I) $<
153
154	cholmod_dense.o: ../Core/cholmod_dense.c ../Core/t_cholmod_dense.c
155	$(C) -c $(I) $<
156
157	cholmod_factor.o: ../Core/cholmod_factor.c
158	$(C) -c $(I) $<
159
160	cholmod_change_factor.o: ../Core/cholmod_change_factor.c \
161	../Core/t_cholmod_change_factor.c
162	$(C) -c $(I) $<
163
164	cholmod_memory.o: ../Core/cholmod_memory.c
165	$(C) -c $(I) $<
166
167	cholmod_sparse.o: ../Core/cholmod_sparse.c
168	$(C) -c $(I) $<
169
170	cholmod_complex.o: ../Core/cholmod_complex.c
171	$(C) -c $(I) $<
172
173	cholmod_transpose.o: ../Core/cholmod_transpose.c ../Core/t_cholmod_transpose.c
174	$(C) -c $(I) $<
175
176	cholmod_band.o: ../Core/cholmod_band.c
177	$(C) -c $(I) $<
178
179	cholmod_copy.o: ../Core/cholmod_copy.c
180	$(C) -c $(I) $<
181
182	cholmod_triplet.o: ../Core/cholmod_triplet.c ../Core/t_cholmod_triplet.c
183	$(C) -c $(I) $<
184
185	cholmod_error.o: ../Core/cholmod_error.c
186	$(C) -c $(I) $<
187
188	cholmod_aat.o: ../Core/cholmod_aat.c
189	$(C) -c $(I) $<
190
191	cholmod_add.o: ../Core/cholmod_add.c
192	$(C) -c $(I) $<
193
194	#-------------------------------------------------------------------------------
195
196	cholmod_l_common.o: ../Core/cholmod_common.c
197	$(C) -DDLONG -c $(I) $< -o $@
198
199	cholmod_l_dense.o: ../Core/cholmod_dense.c ../Core/t_cholmod_dense.c
200	$(C) -DDLONG -c $(I) $< -o $@
201
202	cholmod_l_factor.o: ../Core/cholmod_factor.c
203	$(C) -DDLONG -c $(I) $< -o $@
204
205	cholmod_l_change_factor.o: ../Core/cholmod_change_factor.c \
206	../Core/t_cholmod_change_factor.c
207	$(C) -DDLONG -c $(I) $< -o $@
208
209	cholmod_l_memory.o: ../Core/cholmod_memory.c
210	$(C) -DDLONG -c $(I) $< -o $@
211
212	cholmod_l_sparse.o: ../Core/cholmod_sparse.c
213	$(C) -DDLONG -c $(I) $< -o $@
214
215	cholmod_l_complex.o: ../Core/cholmod_complex.c
216	$(C) -DDLONG -c $(I) $< -o $@
217
218	cholmod_l_transpose.o: ../Core/cholmod_transpose.c ../Core/t_cholmod_transpose.c
219	$(C) -DDLONG -c $(I) $< -o $@
220
221	cholmod_l_band.o: ../Core/cholmod_band.c
222	$(C) -DDLONG -c $(I) $< -o $@
223
224	cholmod_l_copy.o: ../Core/cholmod_copy.c
225	$(C) -DDLONG -c $(I) $< -o $@
226
227	cholmod_l_triplet.o: ../Core/cholmod_triplet.c ../Core/t_cholmod_triplet.c
228	$(C) -DDLONG -c $(I) $< -o $@
229
230	cholmod_l_error.o: ../Core/cholmod_error.c
231	$(C) -DDLONG -c $(I) $< -o $@
232
233	cholmod_l_aat.o: ../Core/cholmod_aat.c
234	$(C) -DDLONG -c $(I) $< -o $@
235
236	cholmod_l_add.o: ../Core/cholmod_add.c
237	$(C) -DDLONG -c $(I) $< -o $@
238
239
240	#-------------------------------------------------------------------------------
241	# Cholesky Module:
242	#-------------------------------------------------------------------------------
243
244	cholmod_amd.o: ../Cholesky/cholmod_amd.c
245	$(C) -c $(I) $<
246
247	cholmod_analyze.o: ../Cholesky/cholmod_analyze.c
248	$(C) -c $(I) $<
249
250	cholmod_colamd.o: ../Cholesky/cholmod_colamd.c
251	$(C) -c $(I) $<
252
253	cholmod_etree.o: ../Cholesky/cholmod_etree.c
254	$(C) -c $(I) $<
255
256	cholmod_factorize.o: ../Cholesky/cholmod_factorize.c
257	$(C) -c $(I) $<
258
259	cholmod_postorder.o: ../Cholesky/cholmod_postorder.c
260	$(C) -c $(I) $<
261
262	cholmod_rcond.o: ../Cholesky/cholmod_rcond.c
263	$(C) -c $(I) $<
264
265	cholmod_resymbol.o: ../Cholesky/cholmod_resymbol.c
266	$(C) -c $(I) $<
267
268	cholmod_rowcolcounts.o: ../Cholesky/cholmod_rowcolcounts.c
269	$(C) -c $(I) $<
270
271	cholmod_solve.o: ../Cholesky/cholmod_solve.c ../Cholesky/t_cholmod_lsolve.c \
272	../Cholesky/t_cholmod_ltsolve.c ../Cholesky/t_cholmod_solve.c
273	$(C) -c $(I) $<
274
275	cholmod_spsolve.o: ../Cholesky/cholmod_spsolve.c
276	$(C) -c $(I) $<
277
278	cholmod_rowfac.o: ../Cholesky/cholmod_rowfac.c ../Cholesky/t_cholmod_rowfac.c
279	$(C) -c $(I) $<
280
281	#-------------------------------------------------------------------------------
282
283	cholmod_l_amd.o: ../Cholesky/cholmod_amd.c
284	$(C) -DDLONG -c $(I) $< -o $@
285
286	cholmod_l_analyze.o: ../Cholesky/cholmod_analyze.c
287	$(C) -DDLONG -c $(I) $< -o $@
288
289	cholmod_l_colamd.o: ../Cholesky/cholmod_colamd.c
290	$(C) -DDLONG -c $(I) $< -o $@
291
292	cholmod_l_etree.o: ../Cholesky/cholmod_etree.c
293	$(C) -DDLONG -c $(I) $< -o $@
294
295	cholmod_l_factorize.o: ../Cholesky/cholmod_factorize.c
296	$(C) -DDLONG -c $(I) $< -o $@
297
298	cholmod_l_postorder.o: ../Cholesky/cholmod_postorder.c
299	$(C) -DDLONG -c $(I) $< -o $@
300
301	cholmod_l_rcond.o: ../Cholesky/cholmod_rcond.c
302	$(C) -DDLONG -c $(I) $< -o $@
303
304	cholmod_l_resymbol.o: ../Cholesky/cholmod_resymbol.c
305	$(C) -DDLONG -c $(I) $< -o $@
306
307	cholmod_l_rowcolcounts.o: ../Cholesky/cholmod_rowcolcounts.c
308	$(C) -DDLONG -c $(I) $< -o $@
309
310	cholmod_l_solve.o: ../Cholesky/cholmod_solve.c ../Cholesky/t_cholmod_lsolve.c \
311	../Cholesky/t_cholmod_ltsolve.c ../Cholesky/t_cholmod_solve.c
312	$(C) -DDLONG -c $(I) $< -o $@
313
314	cholmod_l_spsolve.o: ../Cholesky/cholmod_spsolve.c
315	$(C) -DDLONG -c $(I) $< -o $@
316
317	cholmod_l_rowfac.o: ../Cholesky/cholmod_rowfac.c ../Cholesky/t_cholmod_rowfac.c
318	$(C) -DDLONG -c $(I) $< -o $@
319
320	#-------------------------------------------------------------------------------
321	# Partition Module:
322	#-------------------------------------------------------------------------------
323
324	cholmod_ccolamd.o: ../Partition/cholmod_ccolamd.c
325	$(C) -c $(I) $<
326
327	cholmod_csymamd.o: ../Partition/cholmod_csymamd.c
328	$(C) -c $(I) $<
329
330	cholmod_camd.o: ../Partition/cholmod_camd.c
331	$(C) -c $(I) $<
332
333	cholmod_metis.o: ../Partition/cholmod_metis.c
334	$(C) -c $(I) $<
335
336	cholmod_nesdis.o: ../Partition/cholmod_nesdis.c
337	$(C) -c $(I) $<
338
339	#-------------------------------------------------------------------------------
340
341	cholmod_l_ccolamd.o: ../Partition/cholmod_ccolamd.c
342	$(C) -DDLONG -c $(I) $< -o $@
343
344	cholmod_l_csymamd.o: ../Partition/cholmod_csymamd.c
345	$(C) -DDLONG -c $(I) $< -o $@
346
347	cholmod_l_camd.o: ../Partition/cholmod_camd.c
348	$(C) -DDLONG -c $(I) $< -o $@
349
350	cholmod_l_metis.o: ../Partition/cholmod_metis.c
351	$(C) -DDLONG -c $(I) $< -o $@
352
353	cholmod_l_nesdis.o: ../Partition/cholmod_nesdis.c
354	$(C) -DDLONG -c $(I) $< -o $@
355
356
357	#-------------------------------------------------------------------------------
358	# MatrixOps Module:
359	#-------------------------------------------------------------------------------
360
361	cholmod_horzcat.o: ../MatrixOps/cholmod_horzcat.c
362	$(C) -c $(I) $<
363
364	cholmod_norm.o: ../MatrixOps/cholmod_norm.c
365	$(C) -c $(I) $<
366
367	cholmod_scale.o: ../MatrixOps/cholmod_scale.c
368	$(C) -c $(I) $<
369
370	cholmod_drop.o: ../MatrixOps/cholmod_drop.c
371	$(C) -c $(I) $<
372
373	cholmod_sdmult.o: ../MatrixOps/cholmod_sdmult.c \
374	../MatrixOps/t_cholmod_sdmult.c
375	$(C) -c $(I) $<
376
377	cholmod_ssmult.o: ../MatrixOps/cholmod_ssmult.c
378	$(C) -c $(I) $<
379
380	cholmod_submatrix.o: ../MatrixOps/cholmod_submatrix.c
381	$(C) -c $(I) $<
382
383	cholmod_vertcat.o: ../MatrixOps/cholmod_vertcat.c
384	$(C) -c $(I) $<
385
386	cholmod_symmetry.o: ../MatrixOps/cholmod_symmetry.c
387	$(C) -c $(I) $<
388
389	#-------------------------------------------------------------------------------
390
391	cholmod_l_horzcat.o: ../MatrixOps/cholmod_horzcat.c
392	$(C) -DDLONG -c $(I) $< -o $@
393
394	cholmod_l_norm.o: ../MatrixOps/cholmod_norm.c
395	$(C) -DDLONG -c $(I) $< -o $@
396
397	cholmod_l_scale.o: ../MatrixOps/cholmod_scale.c
398	$(C) -DDLONG -c $(I) $< -o $@
399
400	cholmod_l_drop.o: ../MatrixOps/cholmod_drop.c
401	$(C) -DDLONG -c $(I) $< -o $@
402
403	cholmod_l_sdmult.o: ../MatrixOps/cholmod_sdmult.c \
404	../MatrixOps/t_cholmod_sdmult.c
405	$(C) -DDLONG -c $(I) $< -o $@
406
407	cholmod_l_ssmult.o: ../MatrixOps/cholmod_ssmult.c
408	$(C) -DDLONG -c $(I) $< -o $@
409
410	cholmod_l_submatrix.o: ../MatrixOps/cholmod_submatrix.c
411	$(C) -DDLONG -c $(I) $< -o $@
412
413	cholmod_l_vertcat.o: ../MatrixOps/cholmod_vertcat.c
414	$(C) -DDLONG -c $(I) $< -o $@
415
416	cholmod_l_symmetry.o: ../MatrixOps/cholmod_symmetry.c
417	$(C) -DDLONG -c $(I) $< -o $@
418
419	#-------------------------------------------------------------------------------
420	# Modify Module:
421	#-------------------------------------------------------------------------------
422
423	cholmod_rowadd.o: ../Modify/cholmod_rowadd.c
424	$(C) -c $(I) $<
425
426	cholmod_rowdel.o: ../Modify/cholmod_rowdel.c
427	$(C) -c $(I) $<
428
429	cholmod_updown.o: ../Modify/cholmod_updown.c \
430	../Modify/t_cholmod_updown.c ../Modify/t_cholmod_updown_numkr.c
431	$(C) -c $(I) $<
432
433	#-------------------------------------------------------------------------------
434
435	cholmod_l_rowadd.o: ../Modify/cholmod_rowadd.c
436	$(C) -DDLONG -c $(I) $< -o $@
437
438	cholmod_l_rowdel.o: ../Modify/cholmod_rowdel.c
439	$(C) -DDLONG -c $(I) $< -o $@
440
441	cholmod_l_updown.o: ../Modify/cholmod_updown.c \
442	../Modify/t_cholmod_updown.c ../Modify/t_cholmod_updown_numkr.c
443	$(C) -DDLONG -c $(I) $< -o $@
444
445
446	#-------------------------------------------------------------------------------
447	# Supernodal Module:
448	#-------------------------------------------------------------------------------
449
450	cholmod_super_numeric.o: ../Supernodal/cholmod_super_numeric.c \
451	../Supernodal/t_cholmod_super_numeric.c
452	$(C) -c $(I) $<
453
454	cholmod_super_symbolic.o: ../Supernodal/cholmod_super_symbolic.c
455	$(C) -c $(I) $<
456
457	cholmod_super_solve.o: ../Supernodal/cholmod_super_solve.c \
458	../Supernodal/t_cholmod_super_solve.c
459	$(C) -c $(I) $<
460
461	#-------------------------------------------------------------------------------
462
463	cholmod_l_super_numeric.o: ../Supernodal/cholmod_super_numeric.c \
464	../Supernodal/t_cholmod_super_numeric.c
465	$(C) -DDLONG -c $(I) $< -o $@
466
467	cholmod_l_super_symbolic.o: ../Supernodal/cholmod_super_symbolic.c
468	$(C) -DDLONG -c $(I) $< -o $@
469
470	cholmod_l_super_solve.o: ../Supernodal/cholmod_super_solve.c \
471	../Supernodal/t_cholmod_super_solve.c
472	$(C) -DDLONG -c $(I) $< -o $@

Line 0 Link Here

(-)CHOLMOD_orig/Lib/Makefile.am (+21 lines)
	1	lib_LTLIBRARIES = libcholmod.la
	2	# We're just dumping all the libraries into one, no real source code.
	3	libcholmod_la_SOURCES =
	4	libcholmod_la_LIBADD = $(top_srcdir)/Check/libcheck.la \
	5	$(top_srcdir)/Core/libcore.la \
	6	$(top_srcdir)/MatrixOps/libmops.la \
	7	$(top_srcdir)/Supernodal/libsnod.la \
	8	$(top_srcdir)/Modify/libmodify.la \
	9	$(top_srcdir)/Check/libcheckl.la \
	10	$(top_srcdir)/Core/libcorel.la \
	11	$(top_srcdir)/MatrixOps/libmopsl.la \
	12	$(top_srcdir)/Supernodal/libsnodl.la \
	13	$(top_srcdir)/Modify/libmodifyl.la \
	14	$(top_srcdir)/Partition/libpart.la \
	15	$(top_srcdir)/Partition/libpartl.la \
	16	$(top_srcdir)/Cholesky/libcholesky.la \
	17	$(top_srcdir)/Cholesky/libcholeskyl.la
	18
	19	if ENABLE_METIS
	20	libcholmod_la_LDFLAGS = -lmetis
	21	endif

Lines 1-700 Link Here

(-)CHOLMOD_orig/MATLAB/Makefile (-700 lines)
1	#===============================================================================
2	# CHOLMOD/MATLAB/Makefile
3	#===============================================================================
4
5	default: all
6
7	include ../../UFconfig/UFconfig.mk
8
9	I = -I. -I../../AMD/Include -I../../COLAMD/Include -I../../CCOLAMD/Include \
10	-I../../CAMD/Include -I../Include -I../../UFconfig -I$(METIS_PATH)/Lib
11
12	all: mread sdmult ldlsolve resymbol symbfact2 chol2 lchol \
13	ldlchol cholmod2 ldlupdate metis bisect nesdis etree2 sparse2 analyze \
14	septree spsym mwrite other
15
16	MX = $(MEX) $(CHOLMOD_CONFIG) -DDLONG -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE $(I)
17
18	distclean: purge
19
20	purge: clean
21	- $(RM) .mex *.dll
22
23	clean:
24	- $(RM) $(CLEAN)
25
26	#===============================================================================
27
28	AMD_INC = ../../AMD/Include/amd.h ../../AMD/Include/amd_internal.h
29
30	AMD = \
31	amd_1.o \
32	amd_2.o \
33	amd_aat.o \
34	amd_control.o \
35	amd_defaults.o \
36	amd_dump.o \
37	amd_global.o \
38	amd_info.o \
39	amd_order.o \
40	amd_postorder.o \
41	amd_post_tree.o \
42	amd_preprocess.o \
43	amd_valid.o
44
45	amd_1.o: ../../AMD/Source/amd_1.c $(AMD_INC)
46	$(MX) -c $<
47
48	amd_2.o: ../../AMD/Source/amd_2.c $(AMD_INC)
49	$(MX) -c $<
50
51	amd_aat.o: ../../AMD/Source/amd_aat.c $(AMD_INC)
52	$(MX) -c $<
53
54	amd_control.o: ../../AMD/Source/amd_control.c $(AMD_INC)
55	$(MX) -c $<
56
57	amd_defaults.o: ../../AMD/Source/amd_defaults.c $(AMD_INC)
58	$(MX) -c $<
59
60	amd_dump.o: ../../AMD/Source/amd_dump.c $(AMD_INC)
61	$(MX) -c $<
62
63	amd_global.o: ../../AMD/Source/amd_global.c $(AMD_INC)
64	$(MX) -c $<
65
66	amd_info.o: ../../AMD/Source/amd_info.c $(AMD_INC)
67	$(MX) -c $<
68
69	amd_order.o: ../../AMD/Source/amd_order.c $(AMD_INC)
70	$(MX) -c $<
71
72	amd_postorder.o: ../../AMD/Source/amd_postorder.c $(AMD_INC)
73	$(MX) -c $<
74
75	amd_post_tree.o: ../../AMD/Source/amd_post_tree.c $(AMD_INC)
76	$(MX) -c $<
77
78	amd_preprocess.o: ../../AMD/Source/amd_preprocess.c $(AMD_INC)
79	$(MX) -c $<
80
81	amd_valid.o: ../../AMD/Source/amd_valid.c $(AMD_INC)
82	$(MX) -c $<
83
84	#===============================================================================
85
86	CAMD_INC = ../../CAMD/Include/camd.h ../../CAMD/Include/camd_internal.h
87
88	CAMD = \
89	camd_1.o \
90	camd_2.o \
91	camd_aat.o \
92	camd_control.o \
93	camd_defaults.o \
94	camd_dump.o \
95	camd_global.o \
96	camd_info.o \
97	camd_order.o \
98	camd_postorder.o \
99	camd_preprocess.o \
100	camd_valid.o
101
102	camd_1.o: ../../CAMD/Source/camd_1.c $(CAMD_INC)
103	$(MX) -c $<
104
105	camd_2.o: ../../CAMD/Source/camd_2.c $(CAMD_INC)
106	$(MX) -c $<
107
108	camd_aat.o: ../../CAMD/Source/camd_aat.c $(CAMD_INC)
109	$(MX) -c $<
110
111	camd_control.o: ../../CAMD/Source/camd_control.c $(CAMD_INC)
112	$(MX) -c $<
113
114	camd_defaults.o: ../../CAMD/Source/camd_defaults.c $(CAMD_INC)
115	$(MX) -c $<
116
117	camd_dump.o: ../../CAMD/Source/camd_dump.c $(CAMD_INC)
118	$(MX) -c $<
119
120	camd_global.o: ../../CAMD/Source/camd_global.c $(CAMD_INC)
121	$(MX) -c $<
122
123	camd_info.o: ../../CAMD/Source/camd_info.c $(CAMD_INC)
124	$(MX) -c $<
125
126	camd_order.o: ../../CAMD/Source/camd_order.c $(CAMD_INC)
127	$(MX) -c $<
128
129	camd_postorder.o: ../../CAMD/Source/camd_postorder.c $(CAMD_INC)
130	$(MX) -c $<
131
132	camd_post_tree.o: ../../CAMD/Source/camd_post_tree.c $(CAMD_INC)
133	$(MX) -c $<
134
135	camd_preprocess.o: ../../CAMD/Source/camd_preprocess.c $(CAMD_INC)
136	$(MX) -c $<
137
138	camd_valid.o: ../../CAMD/Source/camd_valid.c $(CAMD_INC)
139	$(MX) -c $<
140
141	#===============================================================================
142
143	COLAMD_INC = ../../COLAMD/Include/colamd.h
144
145	COLAMD = colamd.o colamd_global.o
146
147	colamd.o: ../../COLAMD/Source/colamd.c $(COLAMD_INC)
148	$(MX) -c $<
149
150	colamd_global.o: ../../COLAMD/Source/colamd_global.c $(COLAMD_INC)
151	$(MX) -c $<
152
153	#===============================================================================
154
155	CCOLAMD_INC = ../../CCOLAMD/Include/ccolamd.h
156
157	CCOLAMD = ccolamd.o ccolamd_global.o
158
159	ccolamd.o: ../../CCOLAMD/Source/ccolamd.c $(CCOLAMD_INC)
160	$(MX) -c $<
161
162	ccolamd_global.o: ../../CCOLAMD/Source/ccolamd_global.c $(CCOLAMD_INC)
163	$(MX) -c $<
164
165	#===============================================================================
166
167	# patch METIS 4.0.1
168	rename.h: Makefile $(METIS_PATH)/Lib/rename.h
169	echo '/* do not edit this file; generated by CHOLMOD/MATLAB/Makefile */' > rename.h
170	echo '#undef log2' >> rename.h
171	echo '#include "$(METIS_PATH)/Lib/rename.h"' >> rename.h
172	echo '#undef log2' >> rename.h
173	echo '#define log2 METIS__log2' >> rename.h
174	echo '#include "mex.h"' >> rename.h
175	echo '#define malloc mxMalloc' >> rename.h
176	echo '#define free mxFree' >> rename.h
177	echo '#define calloc mxCalloc' >> rename.h
178	echo '#define realloc mxRealloc' >> rename.h
179
180	METIS_INC = rename.h \
181	$(METIS_PATH)/Lib/defs.h \
182	$(METIS_PATH)/Lib/macros.h \
183	$(METIS_PATH)/Lib/metis.h \
184	$(METIS_PATH)/Lib/proto.h \
185	$(METIS_PATH)/Lib/rename.h \
186	$(METIS_PATH)/Lib/struct.h
187
188	METIS = \
189	balance.o \
190	bucketsort.o \
191	ccgraph.o \
192	coarsen.o \
193	compress.o \
194	debug.o \
195	estmem.o \
196	fm.o \
197	fortran.o \
198	frename.o \
199	graph.o \
200	initpart.o \
201	kmetis.o \
202	kvmetis.o \
203	kwayfm.o \
204	kwayrefine.o \
205	kwayvolfm.o \
206	kwayvolrefine.o \
207	match.o \
208	mbalance2.o \
209	mbalance.o \
210	mcoarsen.o \
211	memory.o \
212	mesh.o \
213	meshpart.o \
214	mfm2.o \
215	mfm.o \
216	mincover.o \
217	minitpart2.o \
218	minitpart.o \
219	mkmetis.o \
220	mkwayfmh.o \
221	mkwayrefine.o \
222	mmatch.o \
223	mmd.o \
224	mpmetis.o \
225	mrefine2.o \
226	mrefine.o \
227	mutil.o \
228	myqsort.o \
229	ometis.o \
230	parmetis.o \
231	pmetis.o \
232	pqueue.o \
233	refine.o \
234	separator.o \
235	sfm.o \
236	srefine.o \
237	stat.o \
238	subdomains.o \
239	timing.o \
240	util.o
241
242	balance.o: $(METIS_PATH)/Lib/balance.c $(METIS_INC)
243	$(MX) -c $<
244
245	bucketsort.o: $(METIS_PATH)/Lib/bucketsort.c $(METIS_INC)
246	$(MX) -c $<
247
248	ccgraph.o: $(METIS_PATH)/Lib/ccgraph.c $(METIS_INC)
249	$(MX) -c $<
250
251	coarsen.o: $(METIS_PATH)/Lib/coarsen.c $(METIS_INC)
252	$(MX) -c $<
253
254	compress.o: $(METIS_PATH)/Lib/compress.c $(METIS_INC)
255	$(MX) -c $<
256
257	debug.o: $(METIS_PATH)/Lib/debug.c $(METIS_INC)
258	$(MX) -c $<
259
260	estmem.o: $(METIS_PATH)/Lib/estmem.c $(METIS_INC)
261	$(MX) -c $<
262
263	fm.o: $(METIS_PATH)/Lib/fm.c $(METIS_INC)
264	$(MX) -c $<
265
266	fortran.o: $(METIS_PATH)/Lib/fortran.c $(METIS_INC)
267	$(MX) -c $<
268
269	frename.o: $(METIS_PATH)/Lib/frename.c $(METIS_INC)
270	$(MX) -c $<
271
272	graph.o: $(METIS_PATH)/Lib/graph.c $(METIS_INC)
273	$(MX) -c $<
274
275	initpart.o: $(METIS_PATH)/Lib/initpart.c $(METIS_INC)
276	$(MX) -c $<
277
278	kmetis.o: $(METIS_PATH)/Lib/kmetis.c $(METIS_INC)
279	$(MX) -c $<
280
281	kvmetis.o: $(METIS_PATH)/Lib/kvmetis.c $(METIS_INC)
282	$(MX) -c $<
283
284	kwayfm.o: $(METIS_PATH)/Lib/kwayfm.c $(METIS_INC)
285	$(MX) -c $<
286
287	kwayrefine.o: $(METIS_PATH)/Lib/kwayrefine.c $(METIS_INC)
288	$(MX) -c $<
289
290	kwayvolfm.o: $(METIS_PATH)/Lib/kwayvolfm.c $(METIS_INC)
291	$(MX) -c $<
292
293	kwayvolrefine.o: $(METIS_PATH)/Lib/kwayvolrefine.c $(METIS_INC)
294	$(MX) -c $<
295
296	match.o: $(METIS_PATH)/Lib/match.c $(METIS_INC)
297	$(MX) -c $<
298
299	mbalance2.o: $(METIS_PATH)/Lib/mbalance2.c $(METIS_INC)
300	$(MX) -c $<
301
302	mbalance.o: $(METIS_PATH)/Lib/mbalance.c $(METIS_INC)
303	$(MX) -c $<
304
305	mcoarsen.o: $(METIS_PATH)/Lib/mcoarsen.c $(METIS_INC)
306	$(MX) -c $<
307
308	memory.o: $(METIS_PATH)/Lib/memory.c $(METIS_INC)
309	$(MX) -c $<
310
311	mesh.o: $(METIS_PATH)/Lib/mesh.c $(METIS_INC)
312	$(MX) -c $<
313
314	meshpart.o: $(METIS_PATH)/Lib/meshpart.c $(METIS_INC)
315	$(MX) -c $<
316
317	mfm2.o: $(METIS_PATH)/Lib/mfm2.c $(METIS_INC)
318	$(MX) -c $<
319
320	mfm.o: $(METIS_PATH)/Lib/mfm.c $(METIS_INC)
321	$(MX) -c $<
322
323	mincover.o: $(METIS_PATH)/Lib/mincover.c $(METIS_INC)
324	$(MX) -c $<
325
326	minitpart2.o: $(METIS_PATH)/Lib/minitpart2.c $(METIS_INC)
327	$(MX) -c $<
328
329	minitpart.o: $(METIS_PATH)/Lib/minitpart.c $(METIS_INC)
330	$(MX) -c $<
331
332	mkmetis.o: $(METIS_PATH)/Lib/mkmetis.c $(METIS_INC)
333	$(MX) -c $<
334
335	mkwayfmh.o: $(METIS_PATH)/Lib/mkwayfmh.c $(METIS_INC)
336	$(MX) -c $<
337
338	mkwayrefine.o: $(METIS_PATH)/Lib/mkwayrefine.c $(METIS_INC)
339	$(MX) -c $<
340
341	mmatch.o: $(METIS_PATH)/Lib/mmatch.c $(METIS_INC)
342	$(MX) -c $<
343
344	mmd.o: $(METIS_PATH)/Lib/mmd.c $(METIS_INC)
345	$(MX) -c $<
346
347	mpmetis.o: $(METIS_PATH)/Lib/mpmetis.c $(METIS_INC)
348	$(MX) -c $<
349
350	mrefine2.o: $(METIS_PATH)/Lib/mrefine2.c $(METIS_INC)
351	$(MX) -c $<
352
353	mrefine.o: $(METIS_PATH)/Lib/mrefine.c $(METIS_INC)
354	$(MX) -c $<
355
356	mutil.o: $(METIS_PATH)/Lib/mutil.c $(METIS_INC)
357	$(MX) -c $<
358
359	myqsort.o: $(METIS_PATH)/Lib/myqsort.c $(METIS_INC)
360	$(MX) -c $<
361
362	ometis.o: $(METIS_PATH)/Lib/ometis.c $(METIS_INC)
363	$(MX) -c $<
364
365	parmetis.o: $(METIS_PATH)/Lib/parmetis.c $(METIS_INC)
366	$(MX) -c $<
367
368	pmetis.o: $(METIS_PATH)/Lib/pmetis.c $(METIS_INC)
369	$(MX) -c $<
370
371	pqueue.o: $(METIS_PATH)/Lib/pqueue.c $(METIS_INC)
372	$(MX) -c $<
373
374	refine.o: $(METIS_PATH)/Lib/refine.c $(METIS_INC)
375	$(MX) -c $<
376
377	separator.o: $(METIS_PATH)/Lib/separator.c $(METIS_INC)
378	$(MX) -c $<
379
380	sfm.o: $(METIS_PATH)/Lib/sfm.c $(METIS_INC)
381	$(MX) -c $<
382
383	srefine.o: $(METIS_PATH)/Lib/srefine.c $(METIS_INC)
384	$(MX) -c $<
385
386	stat.o: $(METIS_PATH)/Lib/stat.c $(METIS_INC)
387	$(MX) -c $<
388
389	subdomains.o: $(METIS_PATH)/Lib/subdomains.c $(METIS_INC)
390	$(MX) -c $<
391
392	timing.o: $(METIS_PATH)/Lib/timing.c $(METIS_INC)
393	$(MX) -c $<
394
395	util.o: $(METIS_PATH)/Lib/util.c $(METIS_INC)
396	$(MX) -c $<
397
398	#===============================================================================
399
400	CHOLMOD_INC = \
401	cholmod_matlab.h \
402	../Include/cholmod_blas.h \
403	../Include/cholmod_check.h \
404	../Include/cholmod_cholesky.h \
405	../Include/cholmod_complexity.h \
406	../Include/cholmod_config.h \
407	../Include/cholmod_core.h \
408	../Include/cholmod.h \
409	../Include/cholmod_internal.h \
410	../Include/cholmod_io64.h \
411	../Include/cholmod_matrixops.h \
412	../Include/cholmod_modify.h \
413	../Include/cholmod_partition.h \
414	../Include/cholmod_supernodal.h \
415	../Include/cholmod_template.h
416
417	CHOLMOD = \
418	cholmod_matlab.o \
419	cholmod_check.o \
420	cholmod_read.o \
421	cholmod_write.o \
422	cholmod_amd.o \
423	cholmod_analyze.o \
424	cholmod_colamd.o \
425	cholmod_etree.o \
426	cholmod_factorize.o \
427	cholmod_postorder.o \
428	cholmod_rcond.o \
429	cholmod_resymbol.o \
430	cholmod_rowcolcounts.o \
431	cholmod_rowfac.o \
432	cholmod_solve.o \
433	cholmod_spsolve.o \
434	cholmod_aat.o \
435	cholmod_add.o \
436	cholmod_band.o \
437	cholmod_change_factor.o \
438	cholmod_common.o \
439	cholmod_complex.o \
440	cholmod_copy.o \
441	cholmod_dense.o \
442	cholmod_error.o \
443	cholmod_factor.o \
444	cholmod_memory.o \
445	cholmod_sparse.o \
446	cholmod_transpose.o \
447	cholmod_triplet.o \
448	cholmod_drop.o \
449	cholmod_horzcat.o \
450	cholmod_norm.o \
451	cholmod_scale.o \
452	cholmod_sdmult.o \
453	cholmod_ssmult.o \
454	cholmod_submatrix.o \
455	cholmod_symmetry.o \
456	cholmod_vertcat.o \
457	cholmod_rowadd.o \
458	cholmod_rowdel.o \
459	cholmod_updown.o \
460	cholmod_camd.o \
461	cholmod_ccolamd.o \
462	cholmod_csymamd.o \
463	cholmod_metis.o \
464	cholmod_nesdis.o \
465	cholmod_super_numeric.o \
466	cholmod_super_solve.o \
467	cholmod_super_symbolic.o
468
469	cholmod_matlab.o: cholmod_matlab.c $(CHOLMOD_INC)
470	$(MX) -c $<
471
472	cholmod_check.o: ../Check/cholmod_check.c $(CHOLMOD_INC)
473	$(MX) -c $<
474
475	cholmod_read.o: ../Check/cholmod_read.c $(CHOLMOD_INC)
476	$(MX) -c $<
477
478	cholmod_write.o: ../Check/cholmod_write.c $(CHOLMOD_INC)
479	$(MX) -c $<
480
481	cholmod_amd.o: ../Cholesky/cholmod_amd.c $(CHOLMOD_INC)
482	$(MX) -c $<
483
484	cholmod_analyze.o: ../Cholesky/cholmod_analyze.c $(CHOLMOD_INC)
485	$(MX) -c $<
486
487	cholmod_colamd.o: ../Cholesky/cholmod_colamd.c $(CHOLMOD_INC)
488	$(MX) -c $<
489
490	cholmod_etree.o: ../Cholesky/cholmod_etree.c $(CHOLMOD_INC)
491	$(MX) -c $<
492
493	cholmod_factorize.o: ../Cholesky/cholmod_factorize.c $(CHOLMOD_INC)
494	$(MX) -c $<
495
496	cholmod_postorder.o: ../Cholesky/cholmod_postorder.c $(CHOLMOD_INC)
497	$(MX) -c $<
498
499	cholmod_rcond.o: ../Cholesky/cholmod_rcond.c $(CHOLMOD_INC)
500	$(MX) -c $<
501
502	cholmod_resymbol.o: ../Cholesky/cholmod_resymbol.c $(CHOLMOD_INC)
503	$(MX) -c $<
504
505	cholmod_rowcolcounts.o: ../Cholesky/cholmod_rowcolcounts.c $(CHOLMOD_INC)
506	$(MX) -c $<
507
508	cholmod_rowfac.o: ../Cholesky/cholmod_rowfac.c \
509	../Cholesky/t_cholmod_rowfac.c $(CHOLMOD_INC)
510	$(MX) -c $<
511
512	cholmod_solve.o: ../Cholesky/cholmod_solve.c \
513	../Cholesky/t_cholmod_lsolve.c \
514	../Cholesky/t_cholmod_ltsolve.c \
515	../Cholesky/t_cholmod_solve.c $(CHOLMOD_INC)
516	$(MX) -c $<
517
518	cholmod_spsolve.o: ../Cholesky/cholmod_spsolve.c $(CHOLMOD_INC)
519	$(MX) -c $<
520
521	cholmod_aat.o: ../Core/cholmod_aat.c $(CHOLMOD_INC)
522	$(MX) -c $<
523
524	cholmod_add.o: ../Core/cholmod_add.c $(CHOLMOD_INC)
525	$(MX) -c $<
526
527	cholmod_band.o: ../Core/cholmod_band.c $(CHOLMOD_INC)
528	$(MX) -c $<
529
530	cholmod_change_factor.o: ../Core/cholmod_change_factor.c \
531	../Core/t_cholmod_change_factor.c $(CHOLMOD_INC)
532	$(MX) -c $<
533
534	cholmod_common.o: ../Core/cholmod_common.c $(CHOLMOD_INC)
535	$(MX) -c $<
536
537	cholmod_complex.o: ../Core/cholmod_complex.c $(CHOLMOD_INC)
538	$(MX) -c $<
539
540	cholmod_copy.o: ../Core/cholmod_copy.c $(CHOLMOD_INC)
541	$(MX) -c $<
542
543	cholmod_dense.o: ../Core/cholmod_dense.c \
544	../Core/t_cholmod_dense.c $(CHOLMOD_INC)
545	$(MX) -c $<
546
547	cholmod_error.o: ../Core/cholmod_error.c $(CHOLMOD_INC)
548	$(MX) -c $<
549
550	cholmod_factor.o: ../Core/cholmod_factor.c $(CHOLMOD_INC)
551	$(MX) -c $<
552
553	cholmod_memory.o: ../Core/cholmod_memory.c $(CHOLMOD_INC)
554	$(MX) -c $<
555
556	cholmod_sparse.o: ../Core/cholmod_sparse.c $(CHOLMOD_INC)
557	$(MX) -c $<
558
559	cholmod_transpose.o: ../Core/cholmod_transpose.c \
560	../Core/t_cholmod_transpose.c $(CHOLMOD_INC)
561	$(MX) -c $<
562
563	cholmod_triplet.o: ../Core/cholmod_triplet.c \
564	../Core/t_cholmod_triplet.c $(CHOLMOD_INC)
565	$(MX) -c $<
566
567	cholmod_drop.o: ../MatrixOps/cholmod_drop.c $(CHOLMOD_INC)
568	$(MX) -c $<
569
570	cholmod_horzcat.o: ../MatrixOps/cholmod_horzcat.c $(CHOLMOD_INC)
571	$(MX) -c $<
572
573	cholmod_norm.o: ../MatrixOps/cholmod_norm.c $(CHOLMOD_INC)
574	$(MX) -c $<
575
576	cholmod_scale.o: ../MatrixOps/cholmod_scale.c $(CHOLMOD_INC)
577	$(MX) -c $<
578
579	cholmod_sdmult.o: ../MatrixOps/cholmod_sdmult.c \
580	../MatrixOps/t_cholmod_sdmult.c $(CHOLMOD_INC)
581	$(MX) -c $<
582
583	cholmod_ssmult.o: ../MatrixOps/cholmod_ssmult.c $(CHOLMOD_INC)
584	$(MX) -c $<
585
586	cholmod_submatrix.o: ../MatrixOps/cholmod_submatrix.c $(CHOLMOD_INC)
587	$(MX) -c $<
588
589	cholmod_symmetry.o: ../MatrixOps/cholmod_symmetry.c $(CHOLMOD_INC)
590	$(MX) -c $<
591
592	cholmod_vertcat.o: ../MatrixOps/cholmod_vertcat.c $(CHOLMOD_INC)
593	$(MX) -c $<
594
595	cholmod_rowadd.o: ../Modify/cholmod_rowadd.c $(CHOLMOD_INC)
596	$(MX) -c $<
597
598	cholmod_rowdel.o: ../Modify/cholmod_rowdel.c $(CHOLMOD_INC)
599	$(MX) -c $<
600
601	cholmod_updown.o: ../Modify/cholmod_updown.c \
602	../Modify/t_cholmod_updown.c \
603	../Modify/t_cholmod_updown_numkr.c $(CHOLMOD_INC)
604	$(MX) -c $<
605
606	cholmod_camd.o: ../Partition/cholmod_camd.c $(CHOLMOD_INC)
607	$(MX) -c $<
608
609	cholmod_ccolamd.o: ../Partition/cholmod_ccolamd.c $(CHOLMOD_INC)
610	$(MX) -c $<
611
612	cholmod_csymamd.o: ../Partition/cholmod_csymamd.c $(CHOLMOD_INC)
613	$(MX) -c $<
614
615	cholmod_metis.o: ../Partition/cholmod_metis.c $(CHOLMOD_INC)
616	$(MX) -c $<
617
618	cholmod_nesdis.o: ../Partition/cholmod_nesdis.c $(CHOLMOD_INC)
619	$(MX) -c $<
620
621	cholmod_super_numeric.o: ../Supernodal/cholmod_super_numeric.c \
622	../Supernodal/t_cholmod_super_numeric.c $(CHOLMOD_INC)
623	$(MX) -c $<
624
625	cholmod_super_solve.o: ../Supernodal/cholmod_super_solve.c \
626	../Supernodal/t_cholmod_super_solve.c $(CHOLMOD_INC)
627	$(MX) -c $<
628
629	cholmod_super_symbolic.o: ../Supernodal/cholmod_super_symbolic.c $(CHOLMOD_INC)
630	$(MX) -c $<
631
632
633	#===============================================================================
634
635	OBJ = $(AMD) $(CAMD) $(COLAMD) $(CCOLAMD) $(METIS) $(CHOLMOD)
636
637	analyze: analyze.c $(OBJ)
638	$(MX) analyze.c $(OBJ)
639
640	mread: mread.c $(OBJ)
641	$(MX) mread.c $(OBJ)
642
643	mwrite: mwrite.c $(OBJ)
644	$(MX) mwrite.c $(OBJ)
645
646	spsym: spsym.c $(OBJ)
647	$(MX) spsym.c $(OBJ)
648
649	chol2: chol2.c $(OBJ)
650	$(MX) chol2.c $(OBJ)
651
652	lchol: lchol.c $(OBJ)
653	$(MX) lchol.c $(OBJ)
654
655	ldlchol: ldlchol.c $(OBJ)
656	$(MX) ldlchol.c $(OBJ)
657
658	ldlupdate: ldlupdate.c $(OBJ)
659	$(MX) ldlupdate.c $(OBJ)
660
661	ldlsolve: ldlsolve.c $(OBJ)
662	$(MX) ldlsolve.c $(OBJ)
663
664	sdmult: sdmult.c $(OBJ)
665	$(MX) sdmult.c $(OBJ)
666
667	resymbol: resymbol.c $(OBJ)
668	$(MX) resymbol.c $(OBJ)
669
670	cholmod2: cholmod2.c $(OBJ)
671	$(MX) cholmod2.c $(OBJ)
672
673	nesdis: nesdis.c $(OBJ)
674	$(MX) nesdis.c $(OBJ)
675
676	septree: septree.c $(OBJ)
677	$(MX) septree.c $(OBJ)
678
679	metis: metis.c $(OBJ)
680	$(MX) metis.c $(OBJ)
681
682	etree2: etree2.c $(OBJ)
683	$(MX) etree2.c $(OBJ)
684
685	bisect: bisect.c $(OBJ)
686	$(MX) bisect.c $(OBJ)
687
688	symbfact2: symbfact2.c $(OBJ)
689	$(MX) symbfact2.c $(OBJ)
690
691	sparse2: sparse2.c $(OBJ)
692	$(MX) sparse2.c $(OBJ)
693
694	#-------------------------------------------------------------------------------
695
696	other:
697	( cd ../../AMD ; $(MAKE) mex )
698	( cd ../../CAMD ; $(MAKE) mex )
699	( cd ../../COLAMD ; $(MAKE) mex )
700	( cd ../../CCOLAMD ; $(MAKE) mex )

Lines 1-59 Link Here

(-)CHOLMOD_orig/Makefile (-59 lines)
1	#-------------------------------------------------------------------------------
2	# CHOLMOD Makefile
3	#-------------------------------------------------------------------------------
4
5	# Note: If you do not have METIS, or do not wish to use it in CHOLMOD, you must
6	# compile CHOLMOD with the -DNPARTITION flag. See ../UFconfig/UFconfig.mk.
7
8	default: all
9
10	include ../UFconfig/UFconfig.mk
11
12	# Compile the C-callable libraries and the Demo programs.
13	all:
14	( cd Lib ; $(MAKE) )
15	( cd Demo ; $(MAKE) )
16
17	# Compile the C-callable libraries only.
18	library:
19	( cd Lib ; $(MAKE) )
20
21	# Remove all files not in the original distribution
22	purge:
23	( cd MATLAB ; $(MAKE) purge )
24	( cd Tcov ; $(MAKE) purge )
25	( cd Lib ; $(MAKE) purge )
26	# ( cd Valgrind ; $(MAKE) purge )
27	( cd Demo ; $(MAKE) purge )
28	( cd Doc ; $(MAKE) purge )
29
30	# Remove all files not in the original distribution, except keep the
31	# compiled libraries.
32	clean:
33	( cd MATLAB ; $(MAKE) clean )
34	( cd Tcov ; $(MAKE) clean )
35	( cd Lib ; $(MAKE) clean )
36	( cd Valgrind ; $(MAKE) clean )
37	( cd Demo ; $(MAKE) clean )
38
39	distclean: purge
40
41	ccode: all
42
43	# Compile the MATLAB mexFunctions (you can also use cholmod_make.m in MATLAB)
44	mex:
45	( cd MATLAB ; $(MAKE) )
46
47	# Run the test coverage suite. Takes about 40 minutes on a 3.2GHz Pentium.
48	# Requires Linux (gcc, gcov).
49	cov:
50	( cd Tcov ; $(MAKE) go )
51
52	# Run the test coverage suite using Valgrind. This takes a * long * time.
53	valgrind:
54	( cd Valgrind ; $(MAKE) )
55
56	# Compile the C-callable libraries and the Demo programs.
57	demo:
58	( cd Demo ; $(MAKE) )
59

Line 0 Link Here

(-)CHOLMOD_orig/Makefile.am (+18 lines)
	1	SUBDIRS = Check Cholesky Core MatrixOps Modify Partition Supernodal Demo Lib
	2	EXTRA_DIST = README.txt
	3	include_HEADERS = Include/cholmod.h \
	4	Include/cholmod_blas.h \
	5	Include/cholmod_check.h \
	6	Include/cholmod_cholesky.h \
	7	Include/cholmod_complexity.h \
	8	Include/cholmod_config.h \
	9	Include/cholmod_core.h \
	10	Include/cholmod_internal.h \
	11	Include/cholmod_io64.h \
	12	Include/cholmod_matrixops.h \
	13	Include/cholmod_modify.h \
	14	Include/cholmod_partition.h \
	15	Include/cholmod_supernodal.h \
	16	Include/cholmod_template.h
	17
	18

Line 0 Link Here

(-)CHOLMOD_orig/MatrixOps/Makefile.am (+14 lines)
	1	AM_CPPFLAGS = -I$(top_srcdir)/Include
	2	noinst_LTLIBRARIES = libmops.la libmopsl.la
	3	libmops_la_SOURCES = cholmod_drop.c \
	4	cholmod_horzcat.c \
	5	cholmod_norm.c \
	6	cholmod_scale.c \
	7	cholmod_sdmult.c \
	8	cholmod_ssmult.c \
	9	cholmod_submatrix.c \
	10	cholmod_symmetry.c \
	11	cholmod_vertcat.c
	12
	13	libmopsl_la_SOURCES = $(libmops_la_SOURCES)
	14	libmopsl_la_CFLAGS = -DDLONG

Line 0 Link Here

(-)CHOLMOD_orig/Tcov/Makefile.am (+224 lines)
		1	AM_CFLAGS = -I$(top_srcdir)/Include -I$(top_srcdir)/Demo
		2	AM_LDFLAGS = -L$(top_builddir)/Lib -lm -llapack -lblas -lgfortran -lgfortranbegin -lcholmod -lcolamd -lamd
		3
		4	if ENABLE_METIS
		5	AM_LDFLAGS += -lcamd -lccolamd -lmetis
		6	endif
		7
		8
		9	check_PROGRAMS = prepare z_demo l_demo cmread clread cm cl
		10	z_demo_SOURCES = z_demo.c
		11	l_demo_SOURCES = l_demo.c
		12	l_demo_CPPFLAGS = -DDLONG
		13	cmread_SOURCES = cmread.c
		14	clread_SOURCES = cmread.c
		15	clread_CPPFLAGS = -DDLONG
		16	cm_SOURCES = cm.c solve.c aug.c \
		17	null.c null2.c raw_factor.c \
		18	test_ops.c unpack.c memory.c \
		19	amdtest.c huge.c ctest.c \
		20	cctest.c lpdemo.c camdtest.c
		21	cl_SOURCES = cm.c solve.c aug.c \
		22	null.c null2.c raw_factor.c \
		23	test_ops.c unpack.c memory.c \
		24	amdtest.c huge.c ctest.c \
		25	cctest.c lpdemo.c camdtest.c
		26
		27	cl_CPPFLAGS = -DDLONG
		28
		29	prepare:
		30	cat $(top_srcdir)/Demo/cholmod_demo.c > z_demo.c
		31	cat $(top_srcdir)/Demo/cholmod_demo.c > l_demo.c
		32
		33	test: check
		34	./z_demo ../Demo/Matrix/bcsstk01.tri > tmp/demo_k1.out
		35	./z_demo ../Demo/Matrix/bcsstk02.tri > tmp/demo_k2.out
		36	./z_demo < ../Demo/Matrix/lp_afiro.tri > tmp/demo_afiro.out
		37	./z_demo < ../Demo/Matrix/can___24.mtx > tmp/demo_can24.out
		38	./z_demo < ../Demo/Matrix/c.tri > tmp/demo_c.out
		39	./z_demo < ../Demo/Matrix/d.tri > tmp/demo_d.out
		40	./z_demo < ../Demo/Matrix/up.tri > tmp/demo_up.out
		41	./z_demo < ../Demo/Matrix/c.mtx > tmp/demo_c_mtx.out
		42	./z_demo < ../Demo/Matrix/0.tri > tmp/demo_0.out
		43	./z_demo < Matrix/3_2 > tmp/demo_3_2.out
		44	./z_demo < Matrix/c5lo > tmp/demo_c5lo.out
		45	./z_demo < Matrix/c10 > tmp/demo_c10.out
		46	./z_demo no_such_file > tmp/demo_no_such_file.out
		47	./z_demo ../Demo/Matrix/mangle1.mtx > tmp/demo_mangle1.out
		48	./z_demo ../Demo/Matrix/mangle2.mtx > tmp/demo_mangle2.out
		49	./z_demo ../Demo/Matrix/mangle3.mtx > tmp/demo_mangle3.out
		50	./z_demo ../Demo/Matrix/mangle4.mtx > tmp/demo_mangle4.out
		51	./z_demo ../Demo/Matrix/pts5ldd03.mtx > tmp/demo_pts5ldd03.out
		52	./l_demo ../Demo/Matrix/bcsstk01.tri > tmp/ldemo_k1.out
		53	./l_demo ../Demo/Matrix/bcsstk02.tri > tmp/ldemo_k2.out
		54	./l_demo < ../Demo/Matrix/lp_afiro.tri > tmp/ldemo_afiro.out
		55	./l_demo < ../Demo/Matrix/can___24.mtx > tmp/ldemo_can24.out
		56	./l_demo < ../Demo/Matrix/c.tri > tmp/ldemo_c.out
		57	./l_demo < ../Demo/Matrix/d.tri > tmp/ldemo_d.out
		58	./l_demo < ../Demo/Matrix/up.tri > tmp/ldemo_up.out
		59	./l_demo < ../Demo/Matrix/c.mtx > tmp/ldemo_c_mtx.out
		60	./l_demo < ../Demo/Matrix/0.tri > tmp/ldemo_0.out
		61	./l_demo < Matrix/3_2 > tmp/ldemo_3_2.out
		62	./l_demo < Matrix/c5lo > tmp/ldemo_c5lo.out
		63	./l_demo < Matrix/c10 > tmp/ldemo_c10.out
		64	./l_demo no_such_file > tmp/ldemo_no_such_file.out
65	./l_demo ../Demo/Matrix/mangle1.mtx > tmp/ldemo_mangle1.out
66	./l_demo ../Demo/Matrix/mangle2.mtx > tmp/ldemo_mangle2.out
67	./l_demo ../Demo/Matrix/mangle3.mtx > tmp/ldemo_mangle3.out
68	./l_demo ../Demo/Matrix/mangle4.mtx > tmp/ldemo_mangle4.out
69	./l_demo ../Demo/Matrix/pts5ldd03.mtx > tmp/ldemo_pts5ldd03.out
70	- grep resid tmp/demo*
71	./cmread no_such_file > tmp/no_such_file.out
72	./cmread Matrix/crud1 > tmp/crud1.out
73	./cmread Matrix/crud2 > tmp/crud2.out
74	./cmread Matrix/fullcrud.mtx > tmp/fullcrud.out
75	./cmread Matrix/fullcrud1.mtx > tmp/fullcrud1.out
76	./cmread Matrix/fullcrud2.mtx > tmp/fullcrud2.out
77	./cmread Matrix/3by0.mtx > tmp/3by0.out
78	./cmread Matrix/fullrza.mtx > tmp/fullrza.out
79	./cmread Matrix/fullrsa.mtx > tmp/fullrsa.out
80	./cmread Matrix/fullcsa.mtx > tmp/fullcsa.out
81	./cmread Matrix/fullcza.mtx > tmp/fullcza.out
82	./cmread Matrix/fullcha.mtx > tmp/fullcha.out
83	./cmread Matrix/cha.mtx > tmp/cha.out
84	./cmread Matrix/cza.mtx > tmp/cza.out
85	./cmread Matrix/csa.mtx > tmp/csa.out
86	./cmread Matrix/one > tmp/one.out
87	./cmread Matrix/rza.mtx > tmp/rza.out
88	./cmread ../Demo/Matrix/mangle5.tri > tmp/mangle5.out
89	./cmread ../Demo/Matrix/mangle6.tri > tmp/mangle6.out
90	./cmread ../Demo/Matrix/mangle7.tri > tmp/mangle6.out
91	./cmread ../Demo/Matrix/mangle8.tri > tmp/mangle8.out
92	./cmread ../Demo/Matrix/empty.tri > tmp/empty.out
93	./cmread ../Demo/Matrix/one.tri > tmp/one.out
94	./cmread Matrix/plskz362.mtx > tmp/plskz363.out
95	./cmread Matrix/2diag.tri > tmp/2diag.out
96	./cmread Matrix/r5lo > tmp/r5lo.out
97	./cmread Matrix/r5lo2 > tmp/r5lo2.out
98	- diff tmp/r5lo.out tmp/r5lo2.out
99	./cmread Matrix/cs.mtx > tmp/cs.out
100	./cmread Matrix/2lo.tri > tmp/2lo.out
101	./cmread Matrix/2.tri > tmp/2.out
102	./cmread Matrix/2up.tri > tmp/2up.out
103	./cmread Matrix/huge.tri > tmp/huge.out
104	./cmread Matrix/1e99 > tmp/1e99.out
105	./clread no_such_file > tmp/l_no_such_file.out
106	./clread Matrix/crud1 > tmp/l_crud1.out
107	./clread Matrix/crud2 > tmp/l_crud2.out
108	./clread Matrix/fullcrud.mtx > tmp/l_fullcrud.out
109	./clread Matrix/fullcrud1.mtx > tmp/l_fullcrud1.out
110	./clread Matrix/fullcrud2.mtx > tmp/l_fullcrud2.out
111	./clread Matrix/3by0.mtx > tmp/l_3by0.out
112	./clread Matrix/fullrza.mtx > tmp/l_fullrza.out
113	./clread Matrix/fullrsa.mtx > tmp/l_fullrsa.out
114	./clread Matrix/fullcsa.mtx > tmp/l_fullcsa.out
115	./clread Matrix/fullcza.mtx > tmp/l_fullcza.out
116	./clread Matrix/fullcha.mtx > tmp/l_fullcha.out
117	./clread Matrix/cha.mtx > tmp/l_cha.out
118	./clread Matrix/cza.mtx > tmp/l_cza.out
119	./clread Matrix/csa.mtx > tmp/l_csa.out
120	./clread Matrix/one > tmp/l_one.out
121	./clread Matrix/rza.mtx > tmp/l_rza.out
122	./clread ../Demo/Matrix/mangle5.tri > tmp/l_mangle5.out
123	./clread ../Demo/Matrix/mangle6.tri > tmp/l_mangle6.out
124	./clread ../Demo/Matrix/mangle7.tri > tmp/l_mangle6.out
125	./clread ../Demo/Matrix/mangle8.tri > tmp/l_mangle8.out
126	./clread ../Demo/Matrix/empty.tri > tmp/l_empty.out
127	./clread ../Demo/Matrix/one.tri > tmp/l_one.out
128	./clread Matrix/plskz362.mtx > tmp/l_plskz363.out
129	./clread Matrix/2diag.tri > tmp/l_2diag.out
130	./clread Matrix/r5lo > tmp/l_r5lo.out
131	./clread Matrix/r5lo2 > tmp/l_r5lo2.out
132	- diff tmp/r5lo.out tmp/r5lo2.out
133	./clread Matrix/cs.mtx > tmp/l_cs.out
134	./clread Matrix/2lo.tri > tmp/l_l_2lo.out
135	./clread Matrix/2.tri > tmp/l_2.out
136	./clread Matrix/2up.tri > tmp/l_2up.out
137	./clread Matrix/huge.tri > tmp/l_huge.out
138	./clread Matrix/1e99 > tmp/l_1e99.out
139	./cm < Matrix/galenet > tmp/galenet.out
140	./cl < Matrix/galenet > tmp/l_galenet.out
141	- ./covall
142	./cm < Matrix/5by50 > tmp/5by50.out
143	./cl < Matrix/5by50 > tmp/l_5by50.out
144	- ./covall
145	./cm < Matrix/r5lo > tmp/r5lo.out
146	./cl < Matrix/r5lo > tmp/l_r5lo.out
147	./cm < Matrix/r5up > tmp/r5up.out
148	./cl < Matrix/r5up > tmp/l_r5up.out
149	./cm < Matrix/r5up2 > tmp/r5up2.out
150	./cl < Matrix/r5up2 > tmp/l_r5up2.out
151	./cm < Matrix/c5up2 > tmp/c5up2.out
152	./cl < Matrix/c5up2 > tmp/l_c5up2.out
153	./cm < Matrix/z5up2 > tmp/z5up2.out
154	./cl < Matrix/z5up2 > tmp/l_z5up2.out
155	./cm -m < Matrix/z5lo > tmp/z5lo.out
156	./cl -m < Matrix/z5lo > tmp/l_z5lo.out
157	./cm < Matrix/ibm32 > tmp/ibm.out
158	./cl < Matrix/ibm32 > tmp/l_ibm.out
159	- ./covall
160	./cm -m < Matrix/c5lo > tmp/c5lo.out
161	./cl -m < Matrix/c5lo > tmp/l_c5lo.out
162	./cm -m < Matrix/z10 > tmp/z10.out
163	./cl -m < Matrix/z10 > tmp/l_z10.out
164	./cm -m < Matrix/z5up > tmp/z5up.out
165	./cl -m < Matrix/z5up > tmp/l_z5up.out
166	- ./covall
167	./cm -s < Matrix/3singular > tmp/3singular.out
168	./cl -s < Matrix/3singular > tmp/l_3singular.out
169	./cm -s < Matrix/z3singular > tmp/z3singular.out
170	./cl -s < Matrix/z3singular > tmp/l_z3singular.out
171	./cm -s < Matrix/c3singular > tmp/c3singular.out
172	./cl -s < Matrix/c3singular > tmp/l_c3singular.out
173	./cm -m < Matrix/0 > tmp/0.out
174	./cl -m < Matrix/0 > tmp/l_0.out
175	./cm -m < Matrix/afiro > tmp/afiro.out
176	./cl -m < Matrix/afiro > tmp/l_afiro.out
177	- ./covall
178	./cm -m < Matrix/k01up > tmp/k01up.out
179	./cl -m < Matrix/k01up > tmp/l_k01up.out
180	- ./covall
181	./cm < Matrix/diag > tmp/diag.out
182	./cl < Matrix/diag > tmp/l_diag.out
183	./cm -m < Matrix/ex5lo > tmp/ex5lo.out
184	./cl -m < Matrix/ex5lo > tmp/l_ex5lo.out
185	- ./covall
186	./cm < Matrix/20lo > tmp/20lo.out
187	./cl < Matrix/20lo > tmp/l_20lo.out
188	./cm < Matrix/z30lo > tmp/z30lo.out
189	./cl < Matrix/z30lo > tmp/l_z30lo.out
190	- ./covall
191	./cm -m < Matrix/z30up > tmp/z30up.out
192	./cl -m < Matrix/z30up > tmp/l_z30up.out
193	./cm < Matrix/c10 > tmp/c10.out
194	./cl < Matrix/c10 > tmp/l_c10.out
195	./cm < Matrix/c30lo > tmp/c30lo.out
196	./cl < Matrix/c30lo > tmp/l_c30lo.out
197	- ./covall
198	./cm -m < Matrix/c30up > tmp/c30up.out
199	./cl -m < Matrix/c30up > tmp/l_c30up.out
200	./cm < Matrix/pi > tmp/pi.out
201	./cl < Matrix/pi > tmp/l_pi.out
202	./cm < Matrix/cpi > tmp/cpi.out
203	./cl < Matrix/cpi > tmp/l_cpi.out
204	./cm < Matrix/1_0 > tmp/1_0.out
205	./cl < Matrix/1_0 > tmp/l_1_0.out
206	./cm -s < Matrix/3b > tmp/3b.out
207	./cl -s < Matrix/3b > tmp/l_3b.out
208	./cm -s < Matrix/cza > tmp/cza2.out
209	./cl -s < Matrix/cza > tmp/l_cza2.out
210	./cm < Matrix/0_1 > tmp/0_1.out
211	./cl < Matrix/0_1 > tmp/l_0_1.out
212	- ./covall
213	./cm -n < Matrix/galenet > tmp/galenet_nan.out
214	- ./covall
215	./cl -n < Matrix/galenet > tmp/l_galenet_nan.out
216	- ./covall
217	./cm < Matrix/a1 > tmp/a1.out
218	- ./covall
219	./cl < Matrix/a1 > tmp/l_a1.out
220	- ./covall
221	./cm < Matrix/zero > tmp/zero.out
222	./cl < Matrix/zero > tmp/zero.out
223	- ./covall
224

Lines 1-34 Link Here

(-)CHOLMOD_orig/Valgrind/Makefile (-34 lines)
1
2	doall: links go
3
4	links:
5	touch links
6	ln -s ../Tcov/amdtest.c
7	ln -s ../Tcov/aug.c
8	ln -s ../Tcov/camdtest.c
9	ln -s ../Tcov/cctest.c
10	ln -s ../Tcov/cm.c
11	ln -s ../Tcov/cm.h
12	ln -s ../Tcov/cmread.c
13	ln -s ../Tcov/ctest.c
14	ln -s ../Tcov/huge.c
15	ln -s ../Tcov/leak.c
16	ln -s ../Tcov/lpdemo.c
17	ln -s ../Tcov/memory.c
18	ln -s ../Tcov/null2.c
19	ln -s ../Tcov/null.c
20	ln -s ../Tcov/raw_factor.c
21	ln -s ../Tcov/solve.c
22	ln -s ../Tcov/test_ops.c
23	ln -s ../Tcov/unpack.c
24	ln -s ../Tcov/comments.txt
25	ln -s ../Tcov/Matrix
26
27	include ../Tcov/Makefile
28
29	dopurge: distclean
30	- $(RM) amdtest.c aug.c camdtest.c cctest.c cm.c cm.h cmread.c \
31	ctest.c huge.c leak.c lpdemo.c memory.c null2.c null.c \
32	raw_factor.c solve.c test_ops.c unpack.c comments.txt \
33	links Matrix
34

Line 0 Link Here

(-)CHOLMOD_orig/configure.ac (+66 lines)
		1	AC_INIT(cholmod, 1.5.0, davis@cise.ufl.edu)
		2	AM_INIT_AUTOMAKE([foreign])
		3	AC_PROG_INSTALL
		4	AC_PROG_LIBTOOL
		5	AC_CHECK_LIB(m, sqrt)
		6	AC_CHECK_HEADERS(UFconfig.h)
		7
		8
		9	AC_ARG_ENABLE(metis,
		10	[AC_HELP_STRING([--enable-metis],
		11	[link against and use metis package])],
		12	[enable_metis=$enableval],
		13	[enable_metis="yes"])
		14	AC_MSG_RESULT($enable_metis)
		15
		16	# By default, cholmod will build with support for metis
		17	# Makefiles need to know for linking.
		18	if test x$enable_metis = xno; then
		19	AC_DEFINE(NPARTITION)
		20	else
		21	AC_CHECK_HEADERS(metis.h)
		22	AC_CHECK_LIB( metis, libmetis__InitTimers, [], \
		23	[ echo "ERROR: Cannot find libmetis!"
		24	exit 1
		25	] )
		26
		27	AC_CHECK_HEADERS(ccolamd.h)
		28	AC_CHECK_LIB( ccolamd, ccolamd_report, [], \
		29	[ echo "ERROR: Cannot find libccolamd!"
		30	exit 1
		31	] )
		32
		33	AC_CHECK_HEADERS(camd.h)
		34	AC_CHECK_LIB( camd, camd_info, [], \
		35	[ echo "ERROR: Cannot find libcamd!"
		36	exit 1
		37	] )
		38	fi
		39	AM_CONDITIONAL([ENABLE_METIS], [test x$enable_metis = xyes] )
		40
		41	AC_CHECK_HEADERS( amd.h )
		42	AC_CHECK_LIB( amd, amd_info, [], \
		43	[ echo "ERROR: Cannot find libamd!"
		44	exit 1
		45	] )
		46
		47	AC_CHECK_HEADERS( colamd.h )
		48	AC_CHECK_LIB( colamd, colamd_recommended, [], \
		49	[ echo "ERROR: Cannot find libcolamd!"
		50	exit 1
		51	] )
		52
		53	AC_CONFIG_FILES(
		54	Makefile \
		55	Check/Makefile \
		56	Cholesky/Makefile \
		57	Core/Makefile \
		58	MatrixOps/Makefile \
		59	Modify/Makefile \
		60	Partition/Makefile \
		61	Supernodal/Makefile \
		62	Demo/Makefile \
		63	Lib/Makefile \
		64	Tcov/Makefile )
65	AC_OUTPUT
66