Bug 875476 – sci-biology/eugene-4.1d-r1 - ./.../markov.cc: error: cannot initialize a variable of type char with

• Status: RESOLVED FIXED
• Product: Gentoo Linux

[Description Toralf Förster 2022-10-05 18:14:10 UTC]

Making all in GetData
make[5]: Entering directory '/var/tmp/portage/sci-biology/eugene-4.1d-r1/work/eugene-4.1d/src/SensorPlugins/0_SensorTk/GetData'
clang++ -DHAVE_CONFIG_H -I. -I../../../..     -pipe -march=native -fno-diagnostics-color -O2 -c -o WAMbuilder.o WAMbuilder.cc
In file included from WAMbuilder.cc:31:
./../markov.cc:793:9: error: cannot initialize a variable of type 'char *' with
      an lvalue of type 'const char *'
  char* codegenetique=CODEGENETIQUE;

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_plasma_systemd-j4-20221005-010004

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-12.2.0 *
clang/llvm (if any):
clang version 15.0.2
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/15/bin
Configuration file: /etc/clang/clang.cfg
/usr/lib/llvm/15
15.0.2
Python 3.10.7
Available Ruby profiles:
  [1]   ruby27 (with Rubygems)
  [2]   ruby30 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.64.0 *
The following VMs are available for generation-2:
*)	Eclipse Temurin JRE 17.0.4.1_p1 [openjdk-jre-bin-17]
Available Java Virtual Machines:
  [1]   openjdk-jre-bin-17  system-vm

The Glorious Glasgow Haskell Compilation System, version 9.0.2
php cli (if any):
  [1]   php7.4
  [2]   php8.0 *
  [3]   php8.1
GNU Make 4.3

  HEAD of ::gentoo
commit 4321f9f5da8d387cced4fb852ffddc23e9d0696b
Author: Repository mirror & CI <[e-mail]>
Date:   Wed Oct 5 14:32:56 2022 +0000

    2022-10-05 14:32:56 UTC

emerge -qpvO sci-biology/eugene
[ebuild  N    ] sci-biology/eugene-4.1d-r1

[Comment 1 Toralf Förster 2022-10-05 18:14:11 UTC]

Created attachment 821353 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2022-10-05 18:14:12 UTC]

Created attachment 821356 [details]
clang.tar.bz2

[Comment 3 Toralf Förster 2022-10-05 18:14:13 UTC]

Created attachment 821359 [details]
emerge-history.txt

[Comment 4 Toralf Förster 2022-10-05 18:14:14 UTC]

Created attachment 821362 [details]
environment

[Comment 5 Toralf Förster 2022-10-05 18:14:15 UTC]

Created attachment 821365 [details]
etc.portage.tar.bz2

[Comment 6 Toralf Förster 2022-10-05 18:14:16 UTC]

Created attachment 821368 [details]
logs.tar.bz2

[Comment 7 Toralf Förster 2022-10-05 18:14:17 UTC]

Created attachment 821371 [details]
sci-biology:eugene-4.1d-r1:20221005-153636.log

[Comment 8 Toralf Förster 2022-10-05 18:14:18 UTC]

Created attachment 821374 [details]
temp.tar.bz2

[Comment 9 Larry the Git Cow 2022-10-23 19:18:24 UTC]

The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=fb20e3f85e6e158e7f3a13b5de473ccaba372a03

commit fb20e3f85e6e158e7f3a13b5de473ccaba372a03
Author:     David Seifert <[e-mail]>
AuthorDate: 2022-10-23 19:18:05 +0000
Commit:     David Seifert <[e-mail]>
CommitDate: 2022-10-23 19:18:05 +0000

    sci-biology/eugene: fix clang 16 build
    
    Closes: https://bugs.gentoo.org/875476
    Signed-off-by: David Seifert <[e-mail]>

 sci-biology/eugene/eugene-4.1d-r1.ebuild           |  1 +
 sci-biology/eugene/files/eugene-4.1d-clang16.patch | 22 ++++++++++++++++++++++
 2 files changed, 23 insertions(+)