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Bug 810892 - sci-chemistry/gromacs-2021.2 - -- Could NOT find MPI_C (missing: MPI_C_WORKS)
Summary: sci-chemistry/gromacs-2021.2 - -- Could NOT find MPI_C (missing: MPI_C_WORKS)
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Alexey Shvetsov
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2021-08-29 09:22 UTC by Toralf Förster
Modified: 2022-02-08 12:02 UTC (History)
1 user (show)

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,19.85 KB, text/plain)
2021-08-29 09:22 UTC, Toralf Förster
Details
CMakeError.log (CMakeError.log,6.36 KB, text/plain)
2021-08-29 09:22 UTC, Toralf Förster
Details
CMakeOutput.log (CMakeOutput.log,106.72 KB, text/plain)
2021-08-29 09:22 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,497.40 KB, text/plain)
2021-08-29 09:22 UTC, Toralf Förster
Details
environment (environment,161.20 KB, text/plain)
2021-08-29 09:22 UTC, Toralf Förster
Details
etc.portage.tar.bz2 (etc.portage.tar.bz2,36.17 KB, application/x-bzip)
2021-08-29 09:22 UTC, Toralf Förster
Details
logs.tar.bz2 (logs.tar.bz2,11.93 KB, application/x-bzip)
2021-08-29 09:22 UTC, Toralf Förster
Details
sci-chemistry:gromacs-2021.2:20210829-062208.log (sci-chemistry:gromacs-2021.2:20210829-062208.log,20.11 KB, text/plain)
2021-08-29 09:22 UTC, Toralf Förster
Details
temp.tar.bz2 (temp.tar.bz2,39.46 KB, application/x-bzip)
2021-08-29 09:22 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2021-08-29 09:22:08 UTC
-- Looking for memalign
-- Looking for memalign - not found
-- Could NOT find MPI_C (missing: MPI_C_WORKS) 
-- Found MPI_CXX: /usr/lib64/libmpi_cxx.so (found version "3.1") 
-- Could NOT find MPI (missing: MPI_C_FOUND) (found version "3.1")
CMake Error at cmake/gmxManageMPI.cmake:172 (message):
  MPI support requested, but no MPI compiler found.  Either set the

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_plasma-j4-20210822-190004

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-pc-linux-gnu-11.2.0 *
clang version 12.0.1
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/12/bin
/usr/lib/llvm/12
12.0.1
Python 3.9.6
Available Ruby profiles:
  [1]   ruby26 (with Rubygems)
  [2]   ruby30 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.54.0
  [2]   rust-1.54.0 *
The following VMs are available for generation-2:
1)	JamVM JDK 2.0.0 [jamvm]
*)	AdoptOpenJDK 8.292_p10 [openjdk-bin-8]
Available Java Virtual Machines:
  [1]   jamvm 
  [2]   openjdk-bin-8  system-vm

The Glorious Glasgow Haskell Compilation System, version 8.10.4

  HEAD of ::gentoo
commit eadbdf39fc68c93bcf8161b7c65036dea5560d7b
Author: Repository mirror & CI <repomirrorci@gentoo.org>
Date:   Sun Aug 29 04:06:26 2021 +0000

    2021-08-29 04:06:25 UTC

emerge -qpvO sci-chemistry/gromacs
[ebuild   R   ] sci-chemistry/gromacs-2021.2  USE="X custom-cflags doc fftw gmxapi gmxapi-legacy hwloc lmfit mpi offensive openmp single-precision threads tng -blas -build-manual -cuda -double-precision -lapack -mkl -opencl (-python) -test" CPU_FLAGS_X86="avx avx2 sse2 sse4_1 -avx512f -fma4" PYTHON_SINGLE_TARGET="python3_9 -python3_8"
Comment 1 Toralf Förster gentoo-dev 2021-08-29 09:22:09 UTC
Created attachment 736597 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2021-08-29 09:22:11 UTC
Created attachment 736600 [details]
CMakeError.log
Comment 3 Toralf Förster gentoo-dev 2021-08-29 09:22:12 UTC
Created attachment 736603 [details]
CMakeOutput.log
Comment 4 Toralf Förster gentoo-dev 2021-08-29 09:22:14 UTC
Created attachment 736606 [details]
emerge-history.txt
Comment 5 Toralf Förster gentoo-dev 2021-08-29 09:22:16 UTC
Created attachment 736609 [details]
environment
Comment 6 Toralf Förster gentoo-dev 2021-08-29 09:22:17 UTC
Created attachment 736612 [details]
etc.portage.tar.bz2
Comment 7 Toralf Förster gentoo-dev 2021-08-29 09:22:18 UTC
Created attachment 736615 [details]
logs.tar.bz2
Comment 8 Toralf Förster gentoo-dev 2021-08-29 09:22:19 UTC
Created attachment 736618 [details]
sci-chemistry:gromacs-2021.2:20210829-062208.log
Comment 9 Toralf Förster gentoo-dev 2021-08-29 09:22:21 UTC
Created attachment 736621 [details]
temp.tar.bz2
Comment 10 Alexey Shvetsov archtester gentoo-dev 2022-02-08 12:02:33 UTC
Check with >2021.3