Gentoo Websites Logo
Go to: Gentoo Home Documentation Forums Lists Bugs Planet Store Wiki Get Gentoo!
Bug 732402 - sci-chemistry/gromacs fails to compile
Summary: sci-chemistry/gromacs fails to compile
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Alexey Shvetsov
URL:
Whiteboard:
Keywords:
Depends on:
Blocks:
 
Reported: 2020-07-13 06:59 UTC by Agostino Sarubbo
Modified: 2021-06-18 12:27 UTC (History)
2 users (show)

See Also:
Package list:
Runtime testing required: ---

Attachments
build.log.bz2 (build.log.bz2,32.14 KB, application/x-bzip-compressed-tar)
2020-07-13 07:00 UTC, Agostino Sarubbo 		Details
other.tar.bz2 (other.tar.bz2,9.46 KB, application/x-bzip-compressed-tar)
2020-07-13 07:00 UTC, Agostino Sarubbo 		Details
View All Add an attachment (proposed patch, testcase, etc.)

Note You need to log in before you can comment on or make changes to this bug.
Description Agostino Sarubbo gentoo-dev 2020-07-13 06:59:58 UTC 
https://blogs.gentoo.org/ago/2020/07/04/gentoo-tinderbox/

Issue: sci-chemistry/gromacs fails to compile.
Discovered on: amd64  (internal ref: ci)
Comment 1 Agostino Sarubbo gentoo-dev 2020-07-13 07:00:06 UTC 
Created attachment 649050 [details]
build.log.bz2

build log and emerge --info
Comment 2 Agostino Sarubbo gentoo-dev 2020-07-13 07:00:12 UTC 
Created attachment 649052 [details]
other.tar.bz2

other logs
Comment 3 Agostino Sarubbo gentoo-dev 2020-11-11 11:38:03 UTC 
@alexxy I cant still reproduce this
Comment 4 Alexey Shvetsov archtester gentoo-dev 2020-11-11 20:34:23 UTC 
Hi!

Cant or can?

Can you rerun it with versions in portage?
Comment 5 Agostino Sarubbo gentoo-dev 2020-11-12 07:30:41 UTC 
(In reply to Alexey Shvetsov from comment #4)
> Hi!
> 
> Cant or can?
> 
> Can you rerun it with versions in portage?

SOrry, typo, I can reproduce
Comment 6 Agostino Sarubbo gentoo-dev 2021-01-18 15:38:13 UTC 
Dear treecleaner@:

I'm still able to reproduce this issue right now.

Since it has not been fixed for a long time, I'd suggest to evaluate if it is the case to remove this package from the tree. Thanks
Comment 7 Pacho Ramos gentoo-dev 2021-01-18 20:44:54 UTC 
Upstream is alive, it's widely used (also by me) and the error is related with something wrong in the docs installation in our side
Comment 8 Pacho Ramos gentoo-dev 2021-01-18 20:52:46 UTC 
In my case it compiles ok... in your case you have:
[1/1] cd /var/tmp/portage/sci-chemistry/gromacs-2020.3/work/gromacs-2020.3_float/docs/manual && /usr/bin/cmake -E echo "Cannot build PDF manual, because a working form of ImageMagick convert is not available"
Cannot build PDF manual, because a working form of ImageMagick convert is not available

error


Maybe some USE flag is needed for imagemagick... I have these for mine:
[ebuild   R    ] media-gfx/imagemagick-7.0.10.46:0/7.0.10-37::gentoo  USE="X bzip2 cxx djvu heif jpeg lcms lzma openmp pango perl png postscript raw svg tiff truetype webp wmf xml zlib -corefonts -fftw -fontconfig -fpx -graphviz -hdri -jbig -jpeg2k -lqr -opencl -openexr -q32 -q8 -static-libs -test" 0 KiB
Comment 9 Christoph Junghans (RETIRED) gentoo-dev 2021-01-18 22:26:07 UTC 
It is because of bug #664236, gromacs converts images during the build for the pdf manual.
Comment 10 Pacho Ramos gentoo-dev 2021-01-18 22:44:19 UTC 
But ebuild is already setting up a policy file to avoid that issue :/
Comment 11 Christoph Junghans (RETIRED) gentoo-dev 2021-01-18 23:39:38 UTC 
This is the test gromacs' cmake runs: https://gitlab.com/gromacs/gromacs/-/blob/master/cmake/gmxTestImageMagick.cmake#L56

Alternatively we could just use the pre-compiled pdf manual from the website.
Comment 12 Alexey Shvetsov archtester gentoo-dev 2021-06-18 12:27:40 UTC 
We use precompiled manual from now on