Bug 712652 – sci-biology/blat-34-r3 : fof.c: error: arithmetic on pointer to an incomplete type

• Status: CONFIRMED
• Product: Gentoo Linux

[Description Toralf Förster 2020-03-15 09:32:28 UTC]

x86_64-gentoo-linux-musl-gcc  -O2 -pipe -march=native -fno-common -falign-functions=32:25:16 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -D_GNU_SOURCE -DMACHTYPE_amd64 -DJK_WARN -Wall -I../inc -I../../inc -I../../../inc -I../../../../inc -I../../../../../inc  -o fof.o -c fof.c
fof.c: In function cmpOnFilePos:
fof.c:339:16: error: arithmetic on pointer to an incomplete type
  339 | int dif = a->f - b->f;
      |                ^
fof.c: In function fofMake:

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.0_musl-20200311-204810

  -------------------------------------------------------------------

gcc-config -l:
 [1] x86_64-gentoo-linux-musl-9.2.0 *
 [2] x86_64-gentoo-linux-musl-9.3.0
clang version 10.0.0 
Target: x86_64-gentoo-linux-musl
Thread model: posix
InstalledDir: /usr/lib/llvm/10/bin
/usr/lib/llvm/10
10.0.0
Available Python interpreters, in order of preference:
  [1]   python3.8
  [2]   python3.7
  [3]   python3.6
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *
Available Rust versions:
  [1]   rust-bin-1.41.1
  [2]   rust-1.41.1 *
The following VMs are available for generation-2:

repository:
==> /var/db/repos/gentoo/metadata/timestamp.chk <==
Sun, 15 Mar 2020 05:08:46 +0000
emerge -qpvO sci-biology/blat
[ebuild  N    ] sci-biology/blat-34-r2

[Comment 1 Toralf Förster 2020-03-15 09:32:31 UTC]

Created attachment 619540 [details]
emerge-info.txt

[Comment 2 Toralf Förster 2020-03-15 09:32:34 UTC]

Created attachment 619542 [details]
emerge-history.txt

[Comment 3 Toralf Förster 2020-03-15 09:32:37 UTC]

Created attachment 619544 [details]
environment

[Comment 4 Toralf Förster 2020-03-15 09:32:40 UTC]

Created attachment 619546 [details]
etc.portage.tbz2

[Comment 5 Toralf Förster 2020-03-15 09:32:43 UTC]

Created attachment 619548 [details]
sci-biology:blat-34-r2:20200315-062816.log

[Comment 6 Toralf Förster 2020-03-15 09:32:46 UTC]

Created attachment 619550 [details]
temp.tbz2

[Comment 7 Toralf Förster 2020-03-16 16:12:25 UTC]

The first attempt to tinderbox a musl image failed at all.

I'll mass close therefore all filed bug reports of the last days related to this tinderbox image.

Please feel free to re-open if you think that the bug is real in musl and not fixed by the musl overlay.

[Comment 8 Agostino Sarubbo 2022-09-26 09:12:25 UTC]

tinderbox_musl has reproduced this issue with version 34-r3 - Updating summary.