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Bug 710554 - sci-biology/qrna-2.0.3c-r3 : sed: -e expression #4, char 77: unknown option to s
Summary: sci-biology/qrna-2.0.3c-r3 : sed: -e expression #4, char 77: unknown option to s
Status: RESOLVED FIXED
Alias: None
Product: Gentoo Linux
Classification: Unclassified
Component: Current packages (show other bugs)
Hardware: All Linux
: Normal normal (vote)
Assignee: Gentoo Science Biology related packages
URL:
Whiteboard:
Keywords:
Depends on:
Blocks: colon-in-CFLAGS
  Show dependency tree
 
Reported: 2020-02-23 10:07 UTC by Toralf Förster
Modified: 2020-02-23 11:52 UTC (History)
0 users

See Also:
Package list:
Runtime testing required: ---


Attachments
emerge-info.txt (emerge-info.txt,16.59 KB, text/plain)
2020-02-23 10:08 UTC, Toralf Förster
Details
emerge-history.txt (emerge-history.txt,103.09 KB, text/plain)
2020-02-23 10:08 UTC, Toralf Förster
Details
environment (environment,46.51 KB, text/plain)
2020-02-23 10:08 UTC, Toralf Förster
Details
etc.portage.tbz2 (etc.portage.tbz2,11.67 KB, application/x-bzip)
2020-02-23 10:08 UTC, Toralf Förster
Details
logs.tbz2 (logs.tbz2,4.39 KB, application/x-bzip)
2020-02-23 10:08 UTC, Toralf Förster
Details
sci-biology:qrna-2.0.3c-r3:20200223-045752.log (sci-biology:qrna-2.0.3c-r3:20200223-045752.log,1.74 KB, text/plain)
2020-02-23 10:08 UTC, Toralf Förster
Details
temp.tbz2 (temp.tbz2,12.28 KB, application/x-bzip)
2020-02-23 10:08 UTC, Toralf Förster
Details

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Description Toralf Förster gentoo-dev 2020-02-23 10:07:59 UTC
 * Applying qrna-2.0.3c-ldflags.patch ...
 [ ok ]
sed: -e expression #4, char 77: unknown option to `s'
 * ERROR: sci-biology/qrna-2.0.3c-r3::gentoo failed (prepare phase):
 *   (no error message)
 * 

  -------------------------------------------------------------------

  This is an unstable amd64 chroot image at a tinderbox (==build bot)
  name: 17.1_desktop_plasma-libressl-20200221-021522

  -------------------------------------------------------------------

  Please see the tracker bug for details.

gcc-config -l:
 [1] x86_64-pc-linux-gnu-9.2.0 *

clang:
clang version 9.0.1 
Target: x86_64-pc-linux-gnu
Thread model: posix
InstalledDir: /usr/lib/llvm/9/bin
llvm:
9.0.1
Available Python interpreters, in order of preference:
  [1]   python3.8
  [2]   python3.6
  [3]   python3.7 (fallback)
  [4]   python2.7 (fallback)
Available Ruby profiles:
  [1]   ruby24 (with Rubygems)
  [2]   ruby25 (with Rubygems) *

java-config:
The following VMs are available for generation-2:
*)	IcedTea JDK 3.14.0 [icedtea-bin-8]
Available Java Virtual Machines:
  [1]   icedtea-bin-8  system-vm
ghc:
The Glorious Glasgow Haskell Compilation System, version 8.0.2

repository:
==> /var/db/repos/gentoo/metadata/timestamp.chk <==
Sun, 23 Feb 2020 02:37:11 +0000

emerge -qpvO sci-biology/qrna
[ebuild  N    ] sci-biology/qrna-2.0.3c-r3
Comment 1 Toralf Förster gentoo-dev 2020-02-23 10:08:02 UTC
Created attachment 615234 [details]
emerge-info.txt
Comment 2 Toralf Förster gentoo-dev 2020-02-23 10:08:05 UTC
Created attachment 615236 [details]
emerge-history.txt
Comment 3 Toralf Förster gentoo-dev 2020-02-23 10:08:08 UTC
Created attachment 615238 [details]
environment
Comment 4 Toralf Förster gentoo-dev 2020-02-23 10:08:10 UTC
Created attachment 615240 [details]
etc.portage.tbz2
Comment 5 Toralf Förster gentoo-dev 2020-02-23 10:08:13 UTC
Created attachment 615242 [details]
logs.tbz2
Comment 6 Toralf Förster gentoo-dev 2020-02-23 10:08:16 UTC
Created attachment 615244 [details]
sci-biology:qrna-2.0.3c-r3:20200223-045752.log
Comment 7 Toralf Förster gentoo-dev 2020-02-23 10:08:19 UTC
Created attachment 615246 [details]
temp.tbz2
Comment 8 Larry the Git Cow gentoo-dev 2020-02-23 11:52:15 UTC
The bug has been closed via the following commit(s):

https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b24fab79ca7863993080b5fafd4ce414ff132c73

commit b24fab79ca7863993080b5fafd4ce414ff132c73
Author:     David Seifert <soap@gentoo.org>
AuthorDate: 2020-02-23 11:51:59 +0000
Commit:     David Seifert <soap@gentoo.org>
CommitDate: 2020-02-23 11:51:59 +0000

    sci-biology/qrna: Port to EAPI 7
    
    Closes: https://bugs.gentoo.org/710554
    Package-Manager: Portage-2.3.89, Repoman-2.3.20
    Signed-off-by: David Seifert <soap@gentoo.org>

 sci-biology/qrna/files/qrna-2.0.3c-ldflags.patch | 357 ++++++++++++++++++++++-
 sci-biology/qrna/qrna-2.0.3c-r3.ebuild           |  15 +-
 2 files changed, 358 insertions(+), 14 deletions(-)